AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033440 MtrunA17_Chr1g0182391 97.154 527 15 0 264 790 354 880 0.0 1024
Msa0033440 MtrunA17_Chr5g0438781 87.476 527 66 0 264 790 354 880 0.0 891
Msa0033440 MtrunA17_Chr1g0188181 75.904 332 37 6 1 298 167 489 2.77e-164 489
Msa0033440 MtrunA17_Chr7g0232251 34.030 526 345 2 265 788 350 875 3.18e-90 303
Msa0033440 MtrunA17_Chr6g0475791 48.534 307 95 7 1 263 47 334 1.64e-75 253
Msa0033440 MtrunA17_Chr3g0102941 76.429 140 17 2 634 771 15 140 4.02e-59 197
Msa0033440 MtrunA17_Chr1g0198031 30.451 266 116 6 1 217 37 282 7.37e-27 116
Msa0033440 MtrunA17_Chr1g0168081 36.842 209 98 4 1 193 54 244 1.24e-26 115
Msa0033440 MtrunA17_Chr3g0126591 33.191 235 123 4 1 218 37 254 3.08e-23 105
Msa0033440 MtrunA17_Chr1g0186481 34.286 210 103 5 1 193 57 248 1.58e-21 99.8
Msa0033440 MtrunA17_Chr7g0239391 26.048 334 159 7 1 264 36 351 4.33e-18 88.2
Msa0033440 MtrunA17_Chr4g0009451 26.220 328 169 8 1 263 30 349 6.03e-18 87.8
Msa0033440 MtrunA17_Chr1g0179471 29.279 222 122 5 1 204 40 244 6.73e-16 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033440 AT1G55250.1 57.765 528 222 1 264 790 373 900 0.0 588
Msa0033440 AT1G55250.5 57.765 528 222 1 264 790 354 881 0.0 588
Msa0033440 AT1G55250.3 55.861 546 222 4 264 790 354 899 0.0 568
Msa0033440 AT1G55250.2 58.158 380 158 1 412 790 4 383 5.44e-144 429
Msa0033440 AT1G55250.4 56.091 394 158 2 412 790 4 397 5.85e-140 419
Msa0033440 AT2G44950.1 36.100 518 327 3 276 790 362 878 9.87e-89 299
Msa0033440 AT5G51670.1 40.000 310 111 8 1 263 48 329 3.76e-54 195
Msa0033440 AT5G51670.2 40.000 310 111 8 1 263 48 329 3.76e-54 195
Msa0033440 AT2G44950.2 37.705 305 189 1 276 579 362 666 3.71e-47 179
Msa0033440 AT5G04550.1 36.321 212 100 5 1 195 37 230 5.09e-29 123
Msa0033440 AT5G04550.2 36.321 212 100 5 1 195 37 230 5.09e-29 123
Msa0033440 AT3G23160.1 32.710 214 101 3 1 193 54 245 6.71e-23 103

Find 133 sgRNAs with CRISPR-Local

Find 547 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCGAAAATTGATTGCTTAT+TGG 0.134150 1_1:+60938839 None:intergenic
CTTCCACATCTTTCTGAATT+TGG 0.157200 1_1:+60941098 None:intergenic
TCTTGTCATGAATTCGCTTC+TGG 0.206023 1_1:-60946751 Msa0033440:CDS
CCTTGTGCTGTTTAATGTTT+TGG 0.226756 1_1:-60938920 Msa0033440:three_prime_UTR
CAGAATTCAGCTCAGCAATT+TGG 0.228587 1_1:+60940099 None:intergenic
GAAGGAGTTGAAGTTGAAAT+TGG 0.231877 1_1:-60946197 Msa0033440:CDS
TCAACATTGGATTGCTGAAT+TGG 0.236912 1_1:-60946371 Msa0033440:CDS
CAAATGTGCTGAACAGGTTT+TGG 0.250460 1_1:-60944571 Msa0033440:CDS
ATCTGAAAGATAGGTGTTTA+TGG 0.251321 1_1:-60946924 Msa0033440:CDS
AAACCACCTCCTAGTACTTT+AGG 0.251479 1_1:-60946637 Msa0033440:CDS
AATGGAAGAGCTTTCTGTTT+TGG 0.258023 1_1:-60947109 Msa0033440:CDS
TGAAGGAAATGAAGGTTCTT+TGG 0.283896 1_1:-60947016 Msa0033440:intron
GTTACAGATTGAAAAGTTAC+AGG 0.298097 1_1:-60944191 Msa0033440:intron
CAAACAAACAACATTGAAAA+AGG 0.303597 1_1:+60938895 None:intergenic
GCAAGGATTAAGGTTGTGTT+TGG 0.316681 1_1:-60946844 Msa0033440:CDS
TGGGTATGGGATTGGGAAGT+GGG 0.317668 1_1:-60946687 Msa0033440:CDS
TACTTTAGGTGCTTCAGCTT+TGG 0.326920 1_1:-60946623 Msa0033440:CDS
CTTTCAGATTCTCTAACTTC+TGG 0.330016 1_1:+60943339 None:intergenic
CTTGTCATGAATTCGCTTCT+GGG 0.331222 1_1:-60946750 Msa0033440:CDS
TCGGGAGTTAGAATTTGTTT+TGG 0.337092 1_1:-60944161 Msa0033440:CDS
TTCAGCTTTATCTAAAGAAA+TGG 0.347729 1_1:-60945919 Msa0033440:CDS
AAGCTGAACTAGAGGAGTTA+AGG 0.349863 1_1:-60943197 Msa0033440:CDS
TTCCCACCTGGCAAACTCTA+AGG 0.353582 1_1:+60941189 None:intergenic
AGAGTTTGCCAGGTGGGAAT+TGG 0.354577 1_1:-60941185 Msa0033440:CDS
TCAGCTTTATCTAAAGAAAT+GGG 0.360839 1_1:-60945918 Msa0033440:CDS
ATGGGTATGGGATTGGGAAG+TGG 0.366563 1_1:-60946688 Msa0033440:CDS
GAAGGTATGGGTATGGGATT+GGG 0.368756 1_1:-60946694 Msa0033440:CDS
TGCAAACAAATGTGCTGAAC+AGG 0.371578 1_1:-60944577 Msa0033440:CDS
TCAATGTTCCTGTAGACTAT+TGG 0.374103 1_1:-60942269 Msa0033440:intron
TGAATTCGCTTCTGGGTCAT+TGG 0.375429 1_1:-60946743 Msa0033440:CDS
TGAAGGTATGGGTATGGGAT+TGG 0.380300 1_1:-60946695 Msa0033440:CDS
TCCTAGAGTCAGAATTGTTA+TGG 0.391813 1_1:+60946149 None:intergenic
AACGACGCCGTTACGCTTGA+AGG 0.394315 1_1:-60947405 Msa0033440:CDS
CAAATGATCAACTTCAACAT+TGG 0.395091 1_1:-60946384 Msa0033440:CDS
CCTGCCTGTGGAACAGCATT+TGG 0.404398 1_1:-60939002 Msa0033440:CDS
AACTTAGCTTCAATTTCCTT+CGG 0.404526 1_1:+60947180 None:intergenic
AACCTCGATTTCAGATATAT+AGG 0.404698 1_1:+60942384 None:intergenic
GGCAACTTTACACCGTGAAA+TGG 0.406984 1_1:-60947127 Msa0033440:CDS
TACGATGGAAGAGGCCAAAC+AGG 0.408232 1_1:-60946068 Msa0033440:CDS
GAAGGAAATGAAGGTTCTTT+GGG 0.410574 1_1:-60947015 Msa0033440:intron
AGCTGAACTAGAGGAGTTAA+GGG 0.411687 1_1:-60943196 Msa0033440:CDS
CAATTCCCGAGTATACTCTT+TGG 0.412514 1_1:-60946407 Msa0033440:CDS
AACTTCAACAGAAGATTTGT+TGG 0.415646 1_1:-60946966 Msa0033440:CDS
CAAGGATTAAGGTTGTGTTT+GGG 0.421518 1_1:-60946843 Msa0033440:CDS
ATTTAGCGGCTTCTGATAGA+AGG 0.423094 1_1:+60941242 None:intergenic
TTGGCAGAAACAAGAAGTTA+AGG 0.438328 1_1:-60946947 Msa0033440:CDS
TCAAGATTTCTTTGTATACA+TGG 0.438637 1_1:+60939044 None:intergenic
CAGCCGCCTTAGAGTTTGCC+AGG 0.439108 1_1:-60941195 Msa0033440:CDS
AAAAGTTACAGGAGGAGAAT+CGG 0.444664 1_1:-60944180 Msa0033440:CDS
GGAAGCTTGTGAAAAGGAAT+TGG 0.451020 1_1:-60941080 Msa0033440:CDS
ACACGGGCCGTGACCCAAAT+GGG 0.455065 1_1:-60947218 Msa0033440:CDS
CAGAAAGCTCTTCCATTTCA+CGG 0.455517 1_1:+60947115 None:intergenic
GATCAATGAAGGTATGGGTA+TGG 0.456047 1_1:-60946701 Msa0033440:CDS
TGATAAGATCAATGAAGGTA+TGG 0.456129 1_1:-60946707 Msa0033440:CDS
GACACGGGCCGTGACCCAAA+TGG 0.457689 1_1:-60947219 Msa0033440:CDS
ATTAAGGTTGTGTTTGGGAT+TGG 0.458504 1_1:-60946838 Msa0033440:intron
TTCATCTTGAGTACATTTAG+CGG 0.459767 1_1:+60941228 None:intergenic
ATCTAAAGAAATGGGGATGA+TGG 0.472663 1_1:-60945910 Msa0033440:CDS
AATGAAGGTTCTTTGGGTGT+TGG 0.477022 1_1:-60947009 Msa0033440:intron
AAGTTAAGGATCTGAAAGAT+AGG 0.479588 1_1:-60946933 Msa0033440:CDS
ACGCAGACCAGTATCCTGTT+TGG 0.480102 1_1:+60946054 None:intergenic
CAGGGTTAACGTCTCAAAAC+GGG 0.481009 1_1:-60946221 Msa0033440:CDS
GGAACGTTACGTGATGCTTA+CGG 0.485415 1_1:-60947148 Msa0033440:CDS
GAAGAGGCCAAACAGGATAC+TGG 0.487514 1_1:-60946061 Msa0033440:intron
CCCAGTTTGATGAAAATGAA+AGG 0.491792 1_1:-60943173 Msa0033440:intron
CATTTGCCAAAGAGTATACT+CGG 0.492660 1_1:+60946401 None:intergenic
GCCTAGAAGATTATCAGAAA+AGG 0.494202 1_1:-60944129 Msa0033440:intron
CGCCTTAGAGTTTGCCAGGT+GGG 0.494648 1_1:-60941191 Msa0033440:CDS
TTATGTCATGCAGGAGTTCA+CGG 0.495128 1_1:-60940157 Msa0033440:intron
TTCCACAGGCAGGACATTTG+CGG 0.497983 1_1:+60939012 None:intergenic
AAAGTTACAGGAGGAGAATC+GGG 0.500243 1_1:-60944179 Msa0033440:CDS
AGGCAGGACATTTGCGGTGA+CGG 0.501630 1_1:+60939018 None:intergenic
GCAGGGTTAACGTCTCAAAA+CGG 0.509035 1_1:-60946222 Msa0033440:CDS
TGAGGCTATTAAAGTTAAAG+AGG 0.509176 1_1:-60942419 Msa0033440:CDS
CTTGTCTAAAAGTACTATCA+AGG 0.510264 1_1:+60938871 None:intergenic
GCTGAAGCACCTAAAGTACT+AGG 0.513044 1_1:+60946628 None:intergenic
CTGTCCAAATGCTGTTCCAC+AGG 0.513830 1_1:+60938998 None:intergenic
CCAAATGCTGTTCCACAGGC+AGG 0.515641 1_1:+60939002 None:intergenic
GTTCAGCACATTTGTTTGCA+AGG 0.516708 1_1:+60944580 None:intergenic
ATTGGACAGATATAAATCAT+TGG 0.516869 1_1:-60946353 Msa0033440:CDS
ATCAATGAAGGTATGGGTAT+GGG 0.520456 1_1:-60946700 Msa0033440:CDS
AGATGTGGAAGCTTGTGAAA+AGG 0.521111 1_1:-60941086 Msa0033440:CDS
CAAAGCCGAGTTTCGTGTGA+TGG 0.522522 1_1:-60945943 Msa0033440:CDS
CTGTTGAAGTTGATCAGCTA+AGG 0.522647 1_1:+60941436 None:intergenic
AAAAGGAATTGGACAGTGAA+AGG 0.524187 1_1:-60941069 Msa0033440:intron
AATGAAGTCTACAAAAGCAT+TGG 0.533686 1_1:-60944547 Msa0033440:intron
GAGCTTGATAAGATCAATGA+AGG 0.537904 1_1:-60946712 Msa0033440:CDS
AATACGAACAATTGTTGCAT+CGG 0.539591 1_1:+60947431 None:intergenic
AATGGGGATGATGGACGAGC+AGG 0.546445 1_1:-60945901 Msa0033440:CDS
TGAAGCCATCACACGAAACT+CGG 0.548398 1_1:+60945938 None:intergenic
ATCATTGGCAGAGTCTCTGC+AGG 0.554470 1_1:-60946338 Msa0033440:intron
AAGCCCACCCATTTGGGTCA+CGG 0.557199 1_1:+60947211 None:intergenic
CCAACATCTGTTGCAGCAAG+TGG 0.560620 1_1:-60942216 Msa0033440:CDS
TATTAAAGTTAAAGAGGCTG+AGG 0.563348 1_1:-60942413 Msa0033440:CDS
CGGGCCGTGACCCAAATGGG+TGG 0.564565 1_1:-60947215 Msa0033440:CDS
GAGGGATGACTATAATATCA+AGG 0.565391 1_1:-60942189 Msa0033440:intron
TGGACGAGCAGGTGAAGCGA+TGG 0.565581 1_1:-60945890 Msa0033440:CDS
GATAAGATCAATGAAGGTAT+GGG 0.566556 1_1:-60946706 Msa0033440:CDS
TCCATAACAATTCTGACTCT+AGG 0.568748 1_1:-60946150 Msa0033440:CDS
CTGAAGCTGCTTGTGAACAA+AGG 0.572664 1_1:-60943233 Msa0033440:CDS
TAACGTCTCAAAACGGGAGA+AGG 0.575407 1_1:-60946215 Msa0033440:CDS
GGAATTGGCTGATGCTGAGA+AGG 0.575750 1_1:-60941170 Msa0033440:CDS
CCACTTGCTGCAACAGATGT+TGG 0.580687 1_1:+60942216 None:intergenic
TCTTGAAATTACGATGGAAG+AGG 0.580999 1_1:-60946077 Msa0033440:CDS
TCACTAAGAGCAACATTGAG+TGG 0.584786 1_1:-60945822 Msa0033440:CDS
AACCTATATATCTGAAATCG+AGG 0.589196 1_1:-60942386 Msa0033440:intron
TAACAGAAAAGATTCATCGT+TGG 0.595202 1_1:+60947365 None:intergenic
AGCATCAGCCAATTCCCACC+TGG 0.596588 1_1:+60941177 None:intergenic
CAGCTTTATCTAAAGAAATG+GGG 0.599897 1_1:-60945917 Msa0033440:CDS
CGACCAAATTCAGAAAGATG+TGG 0.602428 1_1:-60941101 Msa0033440:CDS
ATTGCTGAGCTGAATTCTGA+AGG 0.603898 1_1:-60940095 Msa0033440:CDS
GGGCCGTGACCCAAATGGGT+GGG 0.607090 1_1:-60947214 Msa0033440:CDS
GCACCTAAAGTACTAGGAGG+TGG 0.609360 1_1:+60946634 None:intergenic
CACCGCAAATGTCCTGCCTG+TGG 0.609399 1_1:-60939014 Msa0033440:CDS
CTGTTCTGACCGTCCAAAGG+AGG 0.610575 1_1:-60940003 Msa0033440:intron
CAGAAGTTAGAGAATCTGAA+AGG 0.612893 1_1:-60943338 Msa0033440:CDS
CCAAAACATTAAACAGCACA+AGG 0.616290 1_1:+60938920 None:intergenic
AAGAGCAACATTGAGTGGAA+AGG 0.617926 1_1:-60945817 Msa0033440:intron
GTTGCAGCAAGTGGCTGAGA+GGG 0.621288 1_1:-60942207 Msa0033440:CDS
TGGAGTCTGCTGTTAATGCA+AGG 0.625436 1_1:-60946177 Msa0033440:CDS
TGTCTGTTCTGACCGTCCAA+AGG 0.626715 1_1:-60940006 Msa0033440:CDS
TGCTGCAGAAGCTGAACTAG+AGG 0.629556 1_1:-60943205 Msa0033440:CDS
GAGTTCACGGAAGAAGCTTG+AGG 0.633563 1_1:-60940144 Msa0033440:CDS
TGTTGCAGCAAGTGGCTGAG+AGG 0.640275 1_1:-60942208 Msa0033440:CDS
GAATGATCTTGAAATTACGA+TGG 0.643737 1_1:-60946083 Msa0033440:CDS
ACAGATTGAAAAGTTACAGG+AGG 0.653733 1_1:-60944188 Msa0033440:intron
ACGAACGCCTTCAAGCGTAA+CGG 0.653849 1_1:+60947398 None:intergenic
GCTTGTATCAGAAAGCGTGA+AGG 0.670954 1_1:-60941498 Msa0033440:CDS
ATTTGCCAAAGAGTATACTC+GGG 0.676867 1_1:+60946402 None:intergenic
CAAACTCTAAGGCGGCTGCG+AGG 0.683577 1_1:+60941200 None:intergenic
CCGCCTTAGAGTTTGCCAGG+TGG 0.688256 1_1:-60941192 Msa0033440:CDS
GAAGCACCTAAAGTACTAGG+AGG 0.712343 1_1:+60946631 None:intergenic
CCACCTGGCAAACTCTAAGG+CGG 0.716860 1_1:+60941192 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATCTTTAATATATAC+AGG - chr1_1:60943398-60943417 Msa0033440:intron 10.0%
!! TTTAAAAAAAAATGAAGAAA+TGG + chr1_1:60944358-60944377 None:intergenic 10.0%
!!! ATTTCTTCATTTTTTTTTAA+AGG - chr1_1:60944357-60944376 Msa0033440:intron 10.0%
!!! TTTTTTTTAAAGGTTTTTAT+CGG - chr1_1:60944367-60944386 Msa0033440:intron 10.0%
!! AAAATAAAATTTATAAGTAG+GGG + chr1_1:60944864-60944883 None:intergenic 10.0%
!! CAAAATAAAATTTATAAGTA+GGG + chr1_1:60944865-60944884 None:intergenic 10.0%
!! TCAAAATAAAATTTATAAGT+AGG + chr1_1:60944866-60944885 None:intergenic 10.0%
!!! GTAAAATCATATTTTATAAA+AGG - chr1_1:60945430-60945449 Msa0033440:intron 10.0%
!!! ATAATTTTAGAATTTGTGTT+CGG - chr1_1:60940885-60940904 Msa0033440:intron 15.0%
!! AAAACATATTTATAATTGGT+GGG - chr1_1:60941329-60941348 Msa0033440:intron 15.0%
!! TAATTAACTCTTAGAATTTA+GGG + chr1_1:60941409-60941428 None:intergenic 15.0%
!! ATTAAATTTAATCTCAAATG+AGG + chr1_1:60941764-60941783 None:intergenic 15.0%
!! TTAACATCTAACATAAAATT+TGG + chr1_1:60942247-60942266 None:intergenic 15.0%
!! AAGTGATACATAAAATAATT+AGG + chr1_1:60942488-60942507 None:intergenic 15.0%
!!! ATATTTGTGGTTTTTTATTT+GGG - chr1_1:60943141-60943160 Msa0033440:intron 15.0%
!! TTATTCTTATCTAATAACTT+AGG + chr1_1:60943362-60943381 None:intergenic 15.0%
!! ATTAGATAAGAATAATTGAA+TGG - chr1_1:60943367-60943386 Msa0033440:intron 15.0%
!!! TGTCACTAATATATTAATTT+TGG - chr1_1:60944169-60944188 Msa0033440:CDS 15.0%
!!! AATTGATTTTGAAAATATTC+AGG - chr1_1:60944261-60944280 Msa0033440:intron 15.0%
!! AAAAAAAAAAATAATCGCAA+AGG + chr1_1:60944294-60944313 None:intergenic 15.0%
!!! AATTTTTTTAAACAACTGAT+GGG - chr1_1:60944540-60944559 Msa0033440:intron 15.0%
!! TTTACATAAATAATTCCATT+TGG - chr1_1:60944633-60944652 Msa0033440:intron 15.0%
!! TTACATAAATAATTCCATTT+GGG - chr1_1:60944634-60944653 Msa0033440:intron 15.0%
!! AAATAAAATTTATAAGTAGG+GGG + chr1_1:60944863-60944882 None:intergenic 15.0%
!!! TTTTGTTAAATGTTTTGTTT+AGG + chr1_1:60945790-60945809 None:intergenic 15.0%
!!! TTTTATGGTTAAATTAACTT+GGG - chr1_1:60946252-60946271 Msa0033440:intron 15.0%
!!! TAAGCATCTATATTTTTATT+TGG - chr1_1:60946310-60946329 Msa0033440:intron 15.0%
!! GATAAATTACAAAACTTATT+TGG - chr1_1:60946971-60946990 Msa0033440:CDS 15.0%
!!! TTCTTTTCAAATGCAATTTT+AGG - chr1_1:60939948-60939967 Msa0033440:intron 20.0%
!!! TTACACTGTTAAATTTTTCA+GGG - chr1_1:60940219-60940238 Msa0033440:intron 20.0%
!! TCTCTATATATAAAACAATG+TGG - chr1_1:60940842-60940861 Msa0033440:intron 20.0%
!!! CCAATTATAAATATGTTTTC+AGG + chr1_1:60941328-60941347 None:intergenic 20.0%
!! CCTGAAAACATATTTATAAT+TGG - chr1_1:60941325-60941344 Msa0033440:intron 20.0%
!! GAAAACATATTTATAATTGG+TGG - chr1_1:60941328-60941347 Msa0033440:intron 20.0%
!! GTAATTAACTCTTAGAATTT+AGG + chr1_1:60941410-60941429 None:intergenic 20.0%
!!! TAATGCTTAAAAAGTATGTA+TGG + chr1_1:60941549-60941568 None:intergenic 20.0%
!!! TACATACTTTTTAAGCATTA+AGG - chr1_1:60941549-60941568 Msa0033440:intron 20.0%
!! ATTATTTGTTTATACAACAG+AGG + chr1_1:60941726-60941745 None:intergenic 20.0%
!!! TATATGCATTATGATTTTAG+TGG - chr1_1:60941932-60941951 Msa0033440:intron 20.0%
!!! AATGAATTTTAAAGGAATAG+TGG + chr1_1:60942532-60942551 None:intergenic 20.0%
!!! AAAAGGTCAATGAATTTTAA+AGG + chr1_1:60942540-60942559 None:intergenic 20.0%
!! CTATAATTAAGTTCTTGAAA+AGG + chr1_1:60942557-60942576 None:intergenic 20.0%
!! GCTTAACTATTTAAAAAGTT+GGG + chr1_1:60942753-60942772 None:intergenic 20.0%
!! GCAATAAAACATTTATCATA+AGG + chr1_1:60942775-60942794 None:intergenic 20.0%
!!! GATAAATGTTTTATTGCATT+TGG - chr1_1:60942778-60942797 Msa0033440:intron 20.0%
!! CAAATAAAAAACCACAAATA+TGG + chr1_1:60943142-60943161 None:intergenic 20.0%
!!! CATATTTGTGGTTTTTTATT+TGG - chr1_1:60943140-60943159 Msa0033440:intron 20.0%
!! TAAGTATAGTAAATCTTTAG+TGG + chr1_1:60944468-60944487 None:intergenic 20.0%
!!! GAATTTTTTTAAACAACTGA+TGG - chr1_1:60944539-60944558 Msa0033440:intron 20.0%
!! TACATAAATAATTCCATTTG+GGG - chr1_1:60944635-60944654 Msa0033440:intron 20.0%
!! TTTGCAATATGATAAAAACA+AGG + chr1_1:60944669-60944688 None:intergenic 20.0%
!! TTCTGTTTAAAAATATGTTC+CGG + chr1_1:60945189-60945208 None:intergenic 20.0%
!!! TAAACATGTTGATTTTAAGA+TGG - chr1_1:60945514-60945533 Msa0033440:intron 20.0%
!!! GTTCAGTTTTTAATTAATTG+TGG + chr1_1:60945717-60945736 None:intergenic 20.0%
!!! CTTTTATGGTTAAATTAACT+TGG - chr1_1:60946251-60946270 Msa0033440:intron 20.0%
!!! CATAAGTCATTTTTATGAAT+GGG + chr1_1:60946337-60946356 None:intergenic 20.0%
!! CTTATTCAATAAACTATACT+AGG + chr1_1:60946437-60946456 None:intergenic 20.0%
!! TAGAATATAACACTAAGATA+AGG - chr1_1:60946516-60946535 Msa0033440:intron 20.0%
!! TTTCAGTTCTTATAAAAAAG+AGG - chr1_1:60946660-60946679 Msa0033440:CDS 20.0%
!! TTCAGTTCTTATAAAAAAGA+GGG - chr1_1:60946661-60946680 Msa0033440:CDS 20.0%
!! AAGTTAATTAAGAGTTGTTT+AGG - chr1_1:60946761-60946780 Msa0033440:CDS 20.0%
!! ATAATACAACTTCTTTATCT+TGG - chr1_1:60946916-60946935 Msa0033440:CDS 20.0%
! TGAAGCTAAGTTTAGAAAAA+TGG - chr1_1:60939027-60939046 Msa0033440:CDS 25.0%
!!! AATTTTGATTCTGATCAGAT+GGG + chr1_1:60939426-60939445 None:intergenic 25.0%
!! TATCATCATTTAGTTCATTC+TGG + chr1_1:60939759-60939778 None:intergenic 25.0%
! ATTGGACAGATATAAATCAT+TGG - chr1_1:60939843-60939862 Msa0033440:intron 25.0%
!! CTTACACTGTTAAATTTTTC+AGG - chr1_1:60940218-60940237 Msa0033440:intron 25.0%
!! TTCAGCTTTATCTAAAGAAA+TGG - chr1_1:60940277-60940296 Msa0033440:intron 25.0%
!! TCAGCTTTATCTAAAGAAAT+GGG - chr1_1:60940278-60940297 Msa0033440:intron 25.0%
! TAAAAGACTTATCACAAAGT+AGG + chr1_1:60940441-60940460 None:intergenic 25.0%
!! CTTTTACTTAGTATAGAAGT+TGG - chr1_1:60940510-60940529 Msa0033440:intron 25.0%
! ACTATGCAGCATATATTTAT+TGG + chr1_1:60940647-60940666 None:intergenic 25.0%
! TTATATATAGAGACTACATC+AGG + chr1_1:60940835-60940854 None:intergenic 25.0%
! CTAATACCATCTTAGAATTT+GGG + chr1_1:60941200-60941219 None:intergenic 25.0%
! TCTAATACCATCTTAGAATT+TGG + chr1_1:60941201-60941220 None:intergenic 25.0%
! CTAAGAGTTAATTACTAAAC+TGG - chr1_1:60941415-60941434 Msa0033440:CDS 25.0%
! TGAAGTCATTAAATTCAAAG+AGG + chr1_1:60941462-60941481 None:intergenic 25.0%
! AATATACTGCAAGAGTTTAT+AGG - chr1_1:60941499-60941518 Msa0033440:CDS 25.0%
! TTAATCTCAAATGAGGAAAA+TGG + chr1_1:60941757-60941776 None:intergenic 25.0%
! CATATAATGTTTGAGAATCA+TGG + chr1_1:60941918-60941937 None:intergenic 25.0%
! TTAGTTATAGACAATCTTGA+AGG + chr1_1:60941958-60941977 None:intergenic 25.0%
! AACAAAACATCTTAATGAGT+TGG + chr1_1:60941988-60942007 None:intergenic 25.0%
!!! GAATTTGTTTTGGATATGTA+TGG - chr1_1:60942045-60942064 Msa0033440:intron 25.0%
!! TTGTTATTCTATGTTGTGTT+TGG - chr1_1:60942152-60942171 Msa0033440:intron 25.0%
! TGTTATTCTATGTTGTGTTT+GGG - chr1_1:60942153-60942172 Msa0033440:intron 25.0%
! CTTACTACAGCAAATTAATT+CGG + chr1_1:60942186-60942205 None:intergenic 25.0%
!! TCTCTACATATTTTCATTGA+TGG - chr1_1:60942725-60942744 Msa0033440:intron 25.0%
! GGCTTAACTATTTAAAAAGT+TGG + chr1_1:60942754-60942773 None:intergenic 25.0%
!! AAAAATGCTTTAGATGAACA+TGG - chr1_1:60942908-60942927 Msa0033440:intron 25.0%
! AAAAGATTATGTAGAGTTCA+AGG - chr1_1:60943205-60943224 Msa0033440:CDS 25.0%
! TATCTAATAACTTAGGCTTT+GGG + chr1_1:60943355-60943374 None:intergenic 25.0%
! TTATCTAATAACTTAGGCTT+TGG + chr1_1:60943356-60943375 None:intergenic 25.0%
! TGCTAAAAAACGAAAAAACA+TGG + chr1_1:60943613-60943632 None:intergenic 25.0%
!!! CAGATTTTTTCTGAATAGTA+GGG + chr1_1:60943749-60943768 None:intergenic 25.0%
! TATAAACAGTTGTTAGTTGA+CGG - chr1_1:60943871-60943890 Msa0033440:intron 25.0%
! AGCATTAATTTATCATCAAC+TGG + chr1_1:60944142-60944161 None:intergenic 25.0%
! ACAATTAAAAGTTAGTTGCA+AGG - chr1_1:60944401-60944420 Msa0033440:intron 25.0%
! ATAGTAAATCTTTAGTGGTT+TGG + chr1_1:60944463-60944482 None:intergenic 25.0%
! GATTGTAAATAGTGAAAAAC+AGG - chr1_1:60944815-60944834 Msa0033440:intron 25.0%
! AAACAGAAATATTCACATCA+AGG - chr1_1:60945201-60945220 Msa0033440:intron 25.0%
! AACAGAGAGAAAATTTAGTT+TGG - chr1_1:60945490-60945509 Msa0033440:intron 25.0%
! CTTTAATTCATGTAACTGTT+CGG - chr1_1:60945623-60945642 Msa0033440:intron 25.0%
! TACGAAACGATGTAAAATAT+AGG + chr1_1:60945672-60945691 None:intergenic 25.0%
! TAACTAACACCCAATAAAAA+TGG - chr1_1:60945757-60945776 Msa0033440:intron 25.0%
!!! CCATAAGTCATTTTTATGAA+TGG + chr1_1:60946338-60946357 None:intergenic 25.0%
! CCATTCATAAAAATGACTTA+TGG - chr1_1:60946335-60946354 Msa0033440:intron 25.0%
! ATTCAATAAACTATACTAGG+AGG + chr1_1:60946434-60946453 None:intergenic 25.0%
! GCAATAGTTGCAATATTTAT+TGG - chr1_1:60946572-60946591 Msa0033440:intron 25.0%
! TGCAATATTTATTGGAATCT+AGG - chr1_1:60946580-60946599 Msa0033440:intron 25.0%
! AGTTTCAGTTATTAAAGAGA+GGG - chr1_1:60946606-60946625 Msa0033440:CDS 25.0%
! AGTTTCAGTTATAAAAGAGA+GGG - chr1_1:60946713-60946732 Msa0033440:CDS 25.0%
! TTCCAATAAATATTACAGCT+CGG - chr1_1:60946807-60946826 Msa0033440:intron 25.0%
! GAAATGGAAATAATAAACCA+GGG + chr1_1:60946849-60946868 None:intergenic 25.0%
! TGAAATGGAAATAATAAACC+AGG + chr1_1:60946850-60946869 None:intergenic 25.0%
!! AACTTCTTTATCTTGGATTT+TGG - chr1_1:60946923-60946942 Msa0033440:CDS 25.0%
!! ACTTCTTTATCTTGGATTTT+GGG - chr1_1:60946924-60946943 Msa0033440:CDS 25.0%
!!! TCTATCAGATTGTTTTGAAA+TGG - chr1_1:60946949-60946968 Msa0033440:CDS 25.0%
!! AACTTATTTGGCATATTTTC+TGG - chr1_1:60946983-60947002 Msa0033440:CDS 25.0%
!! ACTTATTTGGCATATTTTCT+GGG - chr1_1:60946984-60947003 Msa0033440:CDS 25.0%
! TCAAGATTTCTTTGTATACA+TGG + chr1_1:60947155-60947174 None:intergenic 25.0%
! CAAACAAACAACATTGAAAA+AGG + chr1_1:60947304-60947323 None:intergenic 25.0%
!! TCCAATAAGCAATCAATTTT+CGG - chr1_1:60947356-60947375 Msa0033440:CDS 25.0%
!! AATTTTCGGATTGTAGATAT+TGG - chr1_1:60947370-60947389 Msa0033440:CDS 25.0%
!! ATTTTCGGATTGTAGATATT+GGG - chr1_1:60947371-60947390 Msa0033440:CDS 25.0%
!!! ACTTGTTTTGTGTATGATAT+TGG - chr1_1:60947403-60947422 Msa0033440:CDS 25.0%
AATACGAACAATTGTTGCAT+CGG + chr1_1:60938768-60938787 None:intergenic 30.0%
TAACAGAAAAGATTCATCGT+TGG + chr1_1:60938834-60938853 None:intergenic 30.0%
! AACGATGAATCTTTTCTGTT+AGG - chr1_1:60938833-60938852 Msa0033440:three_prime_UTR 30.0%
CTAATCTAAGAAACTTCCAT+CGG - chr1_1:60938936-60938955 Msa0033440:three_prime_UTR 30.0%
TAATCTAAGAAACTTCCATC+GGG - chr1_1:60938937-60938956 Msa0033440:three_prime_UTR 30.0%
AACTTAGCTTCAATTTCCTT+CGG + chr1_1:60939019-60939038 None:intergenic 30.0%
!!! AGCTTTCTGTTTTGGAAAAT+GGG - chr1_1:60939095-60939114 Msa0033440:intron 30.0%
AACTTCAACAGAAGATTTGT+TGG - chr1_1:60939230-60939249 Msa0033440:intron 30.0%
AAGTTAAGGATCTGAAAGAT+AGG - chr1_1:60939263-60939282 Msa0033440:intron 30.0%
ATCTGAAAGATAGGTGTTTA+TGG - chr1_1:60939272-60939291 Msa0033440:intron 30.0%
!! TTATGGAGTAGAAGTTTTGA+TGG - chr1_1:60939289-60939308 Msa0033440:intron 30.0%
!!! TTTGTTTCACTGTTTTAGCA+AGG - chr1_1:60939335-60939354 Msa0033440:intron 30.0%
!!! GAATTTTGATTCTGATCAGA+TGG + chr1_1:60939427-60939446 None:intergenic 30.0%
TGATAAGATCAATGAAGGTA+TGG - chr1_1:60939489-60939508 Msa0033440:intron 30.0%
! GATAAGATCAATGAAGGTAT+GGG - chr1_1:60939490-60939509 Msa0033440:intron 30.0%
TGCAAATTTGATCATAGTGT+TGG - chr1_1:60939606-60939625 Msa0033440:intron 30.0%
CAAATGATCAACTTCAACAT+TGG - chr1_1:60939812-60939831 Msa0033440:intron 30.0%
GAATATGTAAAATGTGAAGC+AGG + chr1_1:60939931-60939950 None:intergenic 30.0%
! TTTCAAATGCAATTTTAGGC+TGG - chr1_1:60939952-60939971 Msa0033440:intron 30.0%
GAATGATCTTGAAATTACGA+TGG - chr1_1:60940113-60940132 Msa0033440:CDS 30.0%
ATATTTGCAGTGTGTATGTT+TGG - chr1_1:60940183-60940202 Msa0033440:intron 30.0%
TTAACAGTGTAAGAAACGAA+GGG + chr1_1:60940211-60940230 None:intergenic 30.0%
TTTAACAGTGTAAGAAACGA+AGG + chr1_1:60940212-60940231 None:intergenic 30.0%
! CAGCTTTATCTAAAGAAATG+GGG - chr1_1:60940279-60940298 Msa0033440:intron 30.0%
ATGATTCACTCAAATGTTAG+CGG - chr1_1:60940580-60940599 Msa0033440:intron 30.0%
ATGTTAGCGGTTTGAAAAAA+AGG - chr1_1:60940593-60940612 Msa0033440:intron 30.0%
!! AGTTCTAAGCTGTTTCAATA+AGG - chr1_1:60940664-60940683 Msa0033440:intron 30.0%
CTGTGTGCATGTTAATTTAT+AGG - chr1_1:60940737-60940756 Msa0033440:intron 30.0%
TGAATGCGAAAATTCCAATT+TGG - chr1_1:60940763-60940782 Msa0033440:intron 30.0%
AAAAAGATAGTAAGAGTTGG+GGG + chr1_1:60941084-60941103 None:intergenic 30.0%
CAAAAAGATAGTAAGAGTTG+GGG + chr1_1:60941085-60941104 None:intergenic 30.0%
GCAAAAAGATAGTAAGAGTT+GGG + chr1_1:60941086-60941105 None:intergenic 30.0%
! AACTCTTACTATCTTTTTGC+CGG - chr1_1:60941086-60941105 Msa0033440:CDS 30.0%
! TATTAGAGTCTAAGATCTGT+TGG - chr1_1:60941214-60941233 Msa0033440:CDS 30.0%
! ATTAGAGTCTAAGATCTGTT+GGG - chr1_1:60941215-60941234 Msa0033440:CDS 30.0%
! TAACTCTTAGAATTTAGGGT+GGG + chr1_1:60941405-60941424 None:intergenic 30.0%
TTAACTCTTAGAATTTAGGG+TGG + chr1_1:60941406-60941425 None:intergenic 30.0%
AATGACTTCACAAATTGTGT+TGG - chr1_1:60941472-60941491 Msa0033440:CDS 30.0%
! AATGAAGTCTACAAAAGCAT+TGG - chr1_1:60941649-60941668 Msa0033440:intron 30.0%
!! GAAATGCTCTAAGATTTAGA+AGG + chr1_1:60941810-60941829 None:intergenic 30.0%
ACAAGCAAAACACAAAACAA+AGG + chr1_1:60941876-60941895 None:intergenic 30.0%
! TTGAGAATCATGGAAAGTAT+AGG + chr1_1:60941908-60941927 None:intergenic 30.0%
GTTACAGATTGAAAAGTTAC+AGG - chr1_1:60942005-60942024 Msa0033440:intron 30.0%
! ACCTTTTCTGATAATCTTCT+AGG + chr1_1:60942071-60942090 None:intergenic 30.0%
!! AATCAGCGGATTTTAAACAT+GGG + chr1_1:60942390-60942409 None:intergenic 30.0%
TATTCTAATCTATTCTCCCT+TGG - chr1_1:60942637-60942656 Msa0033440:intron 30.0%
! GCATTTGGTTAATTAACTTG+AGG - chr1_1:60942793-60942812 Msa0033440:intron 30.0%
! CCTTTCATTTTCATCAAACT+GGG + chr1_1:60943026-60943045 None:intergenic 30.0%
! ACCTTTCATTTTCATCAAAC+TGG + chr1_1:60943027-60943046 None:intergenic 30.0%
! GCATACTACTACATTGATTA+TGG - chr1_1:60943057-60943076 Msa0033440:intron 30.0%
AATATGGAACTAAAAGGGAA+GGG + chr1_1:60943126-60943145 None:intergenic 30.0%
AAATATGGAACTAAAAGGGA+AGG + chr1_1:60943127-60943146 None:intergenic 30.0%
CCACAAATATGGAACTAAAA+GGG + chr1_1:60943131-60943150 None:intergenic 30.0%
ACCACAAATATGGAACTAAA+AGG + chr1_1:60943132-60943151 None:intergenic 30.0%
! TTATTTGGGAGTGAATTTTC+TGG - chr1_1:60943155-60943174 Msa0033440:intron 30.0%
! GAGTTTTTATCACAGAATGA+CGG - chr1_1:60943302-60943321 Msa0033440:CDS 30.0%
! TATTGATTGCCTTCATATGA+AGG - chr1_1:60943654-60943673 Msa0033440:intron 30.0%
ATAGTAGGGCATATAAAACA+TGG + chr1_1:60943735-60943754 None:intergenic 30.0%
!!! CCAGATTTTTTCTGAATAGT+AGG + chr1_1:60943750-60943769 None:intergenic 30.0%
CCTACTATTCAGAAAAAATC+TGG - chr1_1:60943747-60943766 Msa0033440:intron 30.0%
TGAGGCTATTAAAGTTAAAG+AGG - chr1_1:60943777-60943796 Msa0033440:intron 30.0%
TATTAAAGTTAAAGAGGCTG+AGG - chr1_1:60943783-60943802 Msa0033440:intron 30.0%
! AACCTATATATCTGAAATCG+AGG - chr1_1:60943810-60943829 Msa0033440:intron 30.0%
AACCTCGATTTCAGATATAT+AGG + chr1_1:60943815-60943834 None:intergenic 30.0%
ATAAACAGTTGTTAGTTGAC+GGG - chr1_1:60943872-60943891 Msa0033440:intron 30.0%
AAAGTAGCATTTACAACTAC+TGG + chr1_1:60944048-60944067 None:intergenic 30.0%
!! CTGTTTTCAAGATTTAGCAT+TGG + chr1_1:60944430-60944449 None:intergenic 30.0%
! AAAGTTGATTCTAGCAGATA+TGG + chr1_1:60944566-60944585 None:intergenic 30.0%
AATTAAATTATCAGCCAAGC+TGG + chr1_1:60944592-60944611 None:intergenic 30.0%
TTCATCTTGAGTACATTTAG+CGG + chr1_1:60944971-60944990 None:intergenic 30.0%
AATCGATGAATTAGCGATAT+TGG - chr1_1:60945311-60945330 Msa0033440:intron 30.0%
! ATGAATTAGCGATATTGGTT+CGG - chr1_1:60945316-60945335 Msa0033440:intron 30.0%
TTGAACAACAAAATAGTTGC+TGG - chr1_1:60945573-60945592 Msa0033440:intron 30.0%
AAGAGATATCTCTCAAAAGA+TGG + chr1_1:60945818-60945837 None:intergenic 30.0%
GTGTTAATGTTATGCATTGA+TGG - chr1_1:60945949-60945968 Msa0033440:CDS 30.0%
ATAAAAGCAAGAACTGTTGT+TGG + chr1_1:60946238-60946257 None:intergenic 30.0%
!! AACAACAGTTCTTGCTTTTA+TGG - chr1_1:60946237-60946256 Msa0033440:intron 30.0%
! TATGGTTAAATTAACTTGGG+AGG - chr1_1:60946255-60946274 Msa0033440:intron 30.0%
! ATGGTTAAATTAACTTGGGA+GGG - chr1_1:60946256-60946275 Msa0033440:intron 30.0%
! GCTGAAAACAACTTTTGAAT+AGG + chr1_1:60946361-60946380 None:intergenic 30.0%
GAGTTTCAGTTATTAAAGAG+AGG - chr1_1:60946605-60946624 Msa0033440:CDS 30.0%
GAGTTTCAGTTATAAAAGAG+AGG - chr1_1:60946712-60946731 Msa0033440:CDS 30.0%
TCCAATAAATATTACAGCTC+GGG - chr1_1:60946808-60946827 Msa0033440:intron 30.0%
CAATGGTGATAAAACTGAAA+TGG + chr1_1:60946865-60946884 None:intergenic 30.0%
! CTTCTTTATCTTGGATTTTG+GGG - chr1_1:60946925-60946944 Msa0033440:CDS 30.0%
! ATCTCTTTGAACTTTGAAGA+AGG - chr1_1:60947031-60947050 Msa0033440:intron 30.0%
AAACTCTTAGATAATGCTGT+TGG + chr1_1:60947080-60947099 None:intergenic 30.0%
GAGTTTGATCTGTATTTAAC+AGG - chr1_1:60947094-60947113 Msa0033440:CDS 30.0%
!! CTTGTCTAAAAGTACTATCA+AGG + chr1_1:60947328-60947347 None:intergenic 30.0%
TCCGAAAATTGATTGCTTAT+TGG + chr1_1:60947360-60947379 None:intergenic 30.0%
! TTTTCGGATTGTAGATATTG+GGG - chr1_1:60947372-60947391 Msa0033440:CDS 30.0%
!!! TTTTTCAGAGTTTGCTGACA+CGG - chr1_1:60938961-60938980 Msa0033440:exon 35.0%
! AATGGAAGAGCTTTCTGTTT+TGG - chr1_1:60939087-60939106 Msa0033440:intron 35.0%
!!! GAGCTTTCTGTTTTGGAAAA+TGG - chr1_1:60939094-60939113 Msa0033440:intron 35.0%
ATCATCATCATCATCATCGT+AGG - chr1_1:60939146-60939165 Msa0033440:intron 35.0%
AGTTGTAGTGAAGGAAATGA+AGG - chr1_1:60939172-60939191 Msa0033440:intron 35.0%
TGAAGGAAATGAAGGTTCTT+TGG - chr1_1:60939180-60939199 Msa0033440:intron 35.0%
GAAGGAAATGAAGGTTCTTT+GGG - chr1_1:60939181-60939200 Msa0033440:intron 35.0%
TTGGCAGAAACAAGAAGTTA+AGG - chr1_1:60939249-60939268 Msa0033440:intron 35.0%
!!! GTGTTGTTTTGTTACTTGTG+AGG - chr1_1:60939311-60939330 Msa0033440:intron 35.0%
!!! CACTGTTTTAGCAAGGATTA+AGG - chr1_1:60939342-60939361 Msa0033440:intron 35.0%
CAAGGATTAAGGTTGTGTTT+GGG - chr1_1:60939353-60939372 Msa0033440:intron 35.0%
! ATTAAGGTTGTGTTTGGGAT+TGG - chr1_1:60939358-60939377 Msa0033440:intron 35.0%
GAGCTTGATAAGATCAATGA+AGG - chr1_1:60939484-60939503 Msa0033440:intron 35.0%
! ATCAATGAAGGTATGGGTAT+GGG - chr1_1:60939496-60939515 Msa0033440:intron 35.0%
! ATTTGCCAAAGAGTATACTC+GGG + chr1_1:60939797-60939816 None:intergenic 35.0%
! CATTTGCCAAAGAGTATACT+CGG + chr1_1:60939798-60939817 None:intergenic 35.0%
TCAACATTGGATTGCTGAAT+TGG - chr1_1:60939825-60939844 Msa0033440:intron 35.0%
GAAGGAGTTGAAGTTGAAAT+TGG - chr1_1:60939999-60940018 Msa0033440:intron 35.0%
TCCATAACAATTCTGACTCT+AGG - chr1_1:60940046-60940065 Msa0033440:CDS 35.0%
TCCTAGAGTCAGAATTGTTA+TGG + chr1_1:60940050-60940069 None:intergenic 35.0%
TCTTGAAATTACGATGGAAG+AGG - chr1_1:60940119-60940138 Msa0033440:CDS 35.0%
ATCTAAAGAAATGGGGATGA+TGG - chr1_1:60940286-60940305 Msa0033440:intron 35.0%
AGGCGAGAAAGAAAATGAAA+GGG + chr1_1:60940421-60940440 None:intergenic 35.0%
TAGGCGAGAAAGAAAATGAA+AGG + chr1_1:60940422-60940441 None:intergenic 35.0%
! AAGCTGTTTCAATAAGGCAT+TGG - chr1_1:60940670-60940689 Msa0033440:intron 35.0%
! TTTGATGACTTGCACCAAAT+TGG + chr1_1:60940780-60940799 None:intergenic 35.0%
AAAAGATAGTAAGAGTTGGG+GGG + chr1_1:60941083-60941102 None:intergenic 35.0%
GGCAAAAAGATAGTAAGAGT+TGG + chr1_1:60941087-60941106 None:intergenic 35.0%
! ACTCTTACTATCTTTTTGCC+GGG - chr1_1:60941087-60941106 Msa0033440:CDS 35.0%
! TTAGAGTCTAAGATCTGTTG+GGG - chr1_1:60941216-60941235 Msa0033440:CDS 35.0%
TAACTCAACCCTTACAAAAC+CGG + chr1_1:60941380-60941399 None:intergenic 35.0%
! ACTTCACAAATTGTGTTGGT+TGG - chr1_1:60941476-60941495 Msa0033440:CDS 35.0%
GTATGTATGGTACTAGTTCA+AGG + chr1_1:60941536-60941555 None:intergenic 35.0%
ACAGATTGAAAAGTTACAGG+AGG - chr1_1:60942008-60942027 Msa0033440:intron 35.0%
AAAAGTTACAGGAGGAGAAT+CGG - chr1_1:60942016-60942035 Msa0033440:intron 35.0%
!! TCGGGAGTTAGAATTTGTTT+TGG - chr1_1:60942035-60942054 Msa0033440:intron 35.0%
GCCTAGAAGATTATCAGAAA+AGG - chr1_1:60942067-60942086 Msa0033440:intron 35.0%
ATCTCTTGTAGCAAAGAGAA+AGG + chr1_1:60942277-60942296 None:intergenic 35.0%
! ATAACAAGCATTCTAGAGAC+TGG + chr1_1:60942346-60942365 None:intergenic 35.0%
!! CAATCAGCGGATTTTAAACA+TGG + chr1_1:60942391-60942410 None:intergenic 35.0%
ATCCACCAAAACTTGAATAC+AGG + chr1_1:60942424-60942443 None:intergenic 35.0%
!!! ATTCAAGTTTTGGTGGATTC+TGG - chr1_1:60942426-60942445 Msa0033440:CDS 35.0%
!! TCTGGAACTTGCTTTGTTTA+TGG - chr1_1:60942444-60942463 Msa0033440:intron 35.0%
!!! GTATCACTTGCTGATTTTCA+TGG - chr1_1:60942499-60942518 Msa0033440:intron 35.0%
!!! ACTTGCTGATTTTCATGGAT+TGG - chr1_1:60942504-60942523 Msa0033440:intron 35.0%
! AGATTTGCAAAAGAAAGTGC+TGG + chr1_1:60942609-60942628 None:intergenic 35.0%
ATGGCAATACATACTTCAAG+TGG - chr1_1:60942663-60942682 Msa0033440:intron 35.0%
TGGCAATACATACTTCAAGT+GGG - chr1_1:60942664-60942683 Msa0033440:intron 35.0%
CTTTCAGATTCTCTAACTTC+TGG + chr1_1:60942860-60942879 None:intergenic 35.0%
CAGAAGTTAGAGAATCTGAA+AGG - chr1_1:60942858-60942877 Msa0033440:intron 35.0%
CCCAGTTTGATGAAAATGAA+AGG - chr1_1:60943023-60943042 Msa0033440:intron 35.0%
!! GATTTGCTGCATTGAAAAAC+TGG - chr1_1:60943079-60943098 Msa0033440:intron 35.0%
!!! CCCTTTTAGTTCCATATTTG+TGG - chr1_1:60943128-60943147 Msa0033440:intron 35.0%
! TCTAAAGGAGCACAATATAC+CGG + chr1_1:60943245-60943264 None:intergenic 35.0%
CTTTAGATAGTGTATGCCTT+GGG - chr1_1:60943258-60943277 Msa0033440:CDS 35.0%
ATGACGGTCACTAGTTAATA+TGG - chr1_1:60943318-60943337 Msa0033440:CDS 35.0%
TGACGGTCACTAGTTAATAT+GGG - chr1_1:60943319-60943338 Msa0033440:CDS 35.0%
TCGTTTACTCCTTCATATGA+AGG + chr1_1:60943666-60943685 None:intergenic 35.0%
TGCATCAACAGATTGATAAG+CGG + chr1_1:60943704-60943723 None:intergenic 35.0%
AAAAAATCTGGAGATGACTG+AGG - chr1_1:60943759-60943778 Msa0033440:intron 35.0%
GAAGAAAAGTGAAGTCATGA+AGG + chr1_1:60943839-60943858 None:intergenic 35.0%
TCAATGTTCCTGTAGACTAT+TGG - chr1_1:60943927-60943946 Msa0033440:intron 35.0%
GAGGGATGACTATAATATCA+AGG - chr1_1:60944007-60944026 Msa0033440:intron 35.0%
! CAGATGTCTTTGTTATGTCT+AGG - chr1_1:60944105-60944124 Msa0033440:intron 35.0%
CTTCCACATCTTTCTGAATT+TGG + chr1_1:60945101-60945120 None:intergenic 35.0%
AAAAGGAATTGGACAGTGAA+AGG - chr1_1:60945127-60945146 Msa0033440:intron 35.0%
CTTAGTCATTCGATCAAGTT+TGG - chr1_1:60945161-60945180 Msa0033440:intron 35.0%
!! TGAATTAGCGATATTGGTTC+GGG - chr1_1:60945317-60945336 Msa0033440:intron 35.0%
! CTCAACAAGTTTTCGCAATT+AGG - chr1_1:60945458-60945477 Msa0033440:intron 35.0%
TTGCTGGAAATGAAAATGAC+AGG - chr1_1:60945589-60945608 Msa0033440:intron 35.0%
AGATATCTCTTTACTCGTCT+AGG - chr1_1:60945827-60945846 Msa0033440:CDS 35.0%
TAGCATTTGCATTTCACCTA+GGG + chr1_1:60945854-60945873 None:intergenic 35.0%
ATAGCATTTGCATTTCACCT+AGG + chr1_1:60945855-60945874 None:intergenic 35.0%
! TGTCTAGATTCTGGAAAGTT+TGG - chr1_1:60945902-60945921 Msa0033440:CDS 35.0%
! TATGCATTGATGGTTGACTT+TGG - chr1_1:60945959-60945978 Msa0033440:CDS 35.0%
ATGTGTTGAGCCAATTTAGA+GGG + chr1_1:60946009-60946028 None:intergenic 35.0%
TATGTGTTGAGCCAATTTAG+AGG + chr1_1:60946010-60946029 None:intergenic 35.0%
AGAACTGTTGTTGGAAAAGT+TGG + chr1_1:60946229-60946248 None:intergenic 35.0%
TTCTTAATGACTAACCCTCT+AGG + chr1_1:60946635-60946654 None:intergenic 35.0%
TAAAAAAGAGGGAAGTCTAG+AGG - chr1_1:60946672-60946691 Msa0033440:CDS 35.0%
AAAAAAGAGGGAAGTCTAGA+GGG - chr1_1:60946673-60946692 Msa0033440:CDS 35.0%
ACCCGAGCTGTAATATTTAT+TGG + chr1_1:60946812-60946831 None:intergenic 35.0%
ATAAATATTACAGCTCGGGT+AGG - chr1_1:60946812-60946831 Msa0033440:intron 35.0%
GGAAATAATAAACCAGGGTT+TGG + chr1_1:60946844-60946863 None:intergenic 35.0%
CCAAAACATTAAACAGCACA+AGG + chr1_1:60947279-60947298 None:intergenic 35.0%
!!! CCTTGTGCTGTTTAATGTTT+TGG - chr1_1:60947276-60947295 Msa0033440:intron 35.0%
!!! TTTTCAGAGTTTGCTGACAC+GGG - chr1_1:60938962-60938981 Msa0033440:exon 40.0%
CAGAAAGCTCTTCCATTTCA+CGG + chr1_1:60939084-60939103 None:intergenic 40.0%
CGTAGGAATAGTTGTAGTGA+AGG - chr1_1:60939163-60939182 Msa0033440:intron 40.0%
AATGAAGGTTCTTTGGGTGT+TGG - chr1_1:60939187-60939206 Msa0033440:intron 40.0%
GCAAGGATTAAGGTTGTGTT+TGG - chr1_1:60939352-60939371 Msa0033440:intron 40.0%
TCTTGTCATGAATTCGCTTC+TGG - chr1_1:60939445-60939464 Msa0033440:intron 40.0%
CTTGTCATGAATTCGCTTCT+GGG - chr1_1:60939446-60939465 Msa0033440:intron 40.0%
! GATCAATGAAGGTATGGGTA+TGG - chr1_1:60939495-60939514 Msa0033440:intron 40.0%
AAACCACCTCCTAGTACTTT+AGG - chr1_1:60939559-60939578 Msa0033440:intron 40.0%
TACTTTAGGTGCTTCAGCTT+TGG - chr1_1:60939573-60939592 Msa0033440:intron 40.0%
CAATTCCCGAGTATACTCTT+TGG - chr1_1:60939789-60939808 Msa0033440:intron 40.0%
! AAATGCAATTTTAGGCTGGC+AGG - chr1_1:60939956-60939975 Msa0033440:intron 40.0%
! AATGCAATTTTAGGCTGGCA+GGG - chr1_1:60939957-60939976 Msa0033440:intron 40.0%
TCACTAAGAGCAACATTGAG+TGG - chr1_1:60940374-60940393 Msa0033440:intron 40.0%
AAGAGCAACATTGAGTGGAA+AGG - chr1_1:60940379-60940398 Msa0033440:intron 40.0%
TAGCGGTTTGAAAAAAAGGC+AGG - chr1_1:60940597-60940616 Msa0033440:intron 40.0%
AAAGATAGTAAGAGTTGGGG+GGG + chr1_1:60941082-60941101 None:intergenic 40.0%
! GGTGAACCCAAATTCTAAGA+TGG - chr1_1:60941191-60941210 Msa0033440:CDS 40.0%
!! TTCACAAGCCGGTTTTGTAA+GGG - chr1_1:60941369-60941388 Msa0033440:intron 40.0%
!! GGTTTTGTAAGGGTTGAGTT+AGG - chr1_1:60941379-60941398 Msa0033440:intron 40.0%
TACTGCAAGAGTTTATAGGC+AGG - chr1_1:60941503-60941522 Msa0033440:intron 40.0%
GCTTGTCTGCTTCAAAACAA+AGG + chr1_1:60941585-60941604 None:intergenic 40.0%
GTTCAGCACATTTGTTTGCA+AGG + chr1_1:60941619-60941638 None:intergenic 40.0%
TGCAAACAAATGTGCTGAAC+AGG - chr1_1:60941619-60941638 Msa0033440:intron 40.0%
! CAAATGTGCTGAACAGGTTT+TGG - chr1_1:60941625-60941644 Msa0033440:intron 40.0%
!! AAGCATTGGTGAGTCTACTT+TGG - chr1_1:60941663-60941682 Msa0033440:intron 40.0%
AAAGTTACAGGAGGAGAATC+GGG - chr1_1:60942017-60942036 Msa0033440:intron 40.0%
! TCAGAAAAGGTATGCTGATC+TGG - chr1_1:60942080-60942099 Msa0033440:intron 40.0%
! CAGAAAAGGTATGCTGATCT+GGG - chr1_1:60942081-60942100 Msa0033440:intron 40.0%
! AGAAAAGGTATGCTGATCTG+GGG - chr1_1:60942082-60942101 Msa0033440:intron 40.0%
! GATTTTAAACATGGGCAAGG+GGG + chr1_1:60942382-60942401 None:intergenic 40.0%
! GGATTTTAAACATGGGCAAG+GGG + chr1_1:60942383-60942402 None:intergenic 40.0%
! CGGATTTTAAACATGGGCAA+GGG + chr1_1:60942384-60942403 None:intergenic 40.0%
AACTTGAATACAGGAGGTCA+GGG + chr1_1:60942415-60942434 None:intergenic 40.0%
AAACTTGAATACAGGAGGTC+AGG + chr1_1:60942416-60942435 None:intergenic 40.0%
!! GACCTCCTGTATTCAAGTTT+TGG - chr1_1:60942416-60942435 Msa0033440:CDS 40.0%
CACCAAAACTTGAATACAGG+AGG + chr1_1:60942421-60942440 None:intergenic 40.0%
!! CTCCTGTATTCAAGTTTTGG+TGG - chr1_1:60942419-60942438 Msa0033440:CDS 40.0%
! CCATTGGTGGACAAAATTTG+AGG + chr1_1:60942584-60942603 None:intergenic 40.0%
! CCTCAAATTTTGTCCACCAA+TGG - chr1_1:60942581-60942600 Msa0033440:intron 40.0%
!! AAAGAAAGTGCTGGAACCAT+TGG + chr1_1:60942600-60942619 None:intergenic 40.0%
TCTAATCTATTCTCCCTTGG+AGG - chr1_1:60942640-60942659 Msa0033440:intron 40.0%
TATGTATTGCCATCCTCCAA+GGG + chr1_1:60942656-60942675 None:intergenic 40.0%
AAGCTGAACTAGAGGAGTTA+AGG - chr1_1:60942999-60943018 Msa0033440:intron 40.0%
AGCTGAACTAGAGGAGTTAA+GGG - chr1_1:60943000-60943019 Msa0033440:intron 40.0%
! TTCTGGTGATGAAGAGTGAA+AGG - chr1_1:60943172-60943191 Msa0033440:intron 40.0%
AGTTCAAGGACTTTGTCCTT+TGG - chr1_1:60943219-60943238 Msa0033440:CDS 40.0%
CCAAGGCATACACTATCTAA+AGG + chr1_1:60943260-60943279 None:intergenic 40.0%
CCTTTAGATAGTGTATGCCT+TGG - chr1_1:60943257-60943276 Msa0033440:CDS 40.0%
ATCAACAGATTGATAAGCGG+AGG + chr1_1:60943701-60943720 None:intergenic 40.0%
ATGCTTGACCAATAGTCTAC+AGG + chr1_1:60943938-60943957 None:intergenic 40.0%
GACATAACAAAGACATCTGC+AGG + chr1_1:60944104-60944123 None:intergenic 40.0%
! GAATCAACTTTTGACCAGCT+TGG - chr1_1:60944575-60944594 Msa0033440:CDS 40.0%
! CTGTTGAAGTTGATCAGCTA+AGG + chr1_1:60944763-60944782 None:intergenic 40.0%
GGCTAAGTAGTAGAGGAAAT+AGG + chr1_1:60944842-60944861 None:intergenic 40.0%
ATTTAGCGGCTTCTGATAGA+AGG + chr1_1:60944957-60944976 None:intergenic 40.0%
CGACCAAATTCAGAAAGATG+TGG - chr1_1:60945095-60945114 Msa0033440:intron 40.0%
AGATGTGGAAGCTTGTGAAA+AGG - chr1_1:60945110-60945129 Msa0033440:intron 40.0%
GGAAGCTTGTGAAAAGGAAT+TGG - chr1_1:60945116-60945135 Msa0033440:intron 40.0%
CATTCGATCAAGTTTGGATC+CGG - chr1_1:60945167-60945186 Msa0033440:intron 40.0%
ACTAAACCTCACTTAGTGGA+GGG + chr1_1:60945236-60945255 None:intergenic 40.0%
ACACACTAAACCTCACTTAG+TGG + chr1_1:60945240-60945259 None:intergenic 40.0%
! TCATCGATTACACAACCTTG+CGG + chr1_1:60945300-60945319 None:intergenic 40.0%
AAGAACCGTGGTATATGGTT+CGG - chr1_1:60945367-60945386 Msa0033440:intron 40.0%
TACACAAACTAAGCAGCCAT+GGG + chr1_1:60945413-60945432 None:intergenic 40.0%
TTACACAAACTAAGCAGCCA+TGG + chr1_1:60945414-60945433 None:intergenic 40.0%
!!! GGACTGCTGCCATTTTTATT+GGG + chr1_1:60945769-60945788 None:intergenic 40.0%
!!! AGGACTGCTGCCATTTTTAT+TGG + chr1_1:60945770-60945789 None:intergenic 40.0%
GAGTGAAATGCCCTCTAAAT+TGG - chr1_1:60945996-60946015 Msa0033440:intron 40.0%
CTCATCCAATTATGTCATGC+AGG - chr1_1:60946030-60946049 Msa0033440:intron 40.0%
GAACTCCTGCATGACATAAT+TGG + chr1_1:60946038-60946057 None:intergenic 40.0%
TTATGTCATGCAGGAGTTCA+CGG - chr1_1:60946039-60946058 Msa0033440:intron 40.0%
CAGAATTCAGCTCAGCAATT+TGG + chr1_1:60946100-60946119 None:intergenic 40.0%
ATTGCTGAGCTGAATTCTGA+AGG - chr1_1:60946101-60946120 Msa0033440:CDS 40.0%
!!! CTGTTTTTACCTCCTTTGGA+CGG + chr1_1:60946205-60946224 None:intergenic 40.0%
! AATGCACACATGCTGTCTTT+TGG - chr1_1:60946479-60946498 Msa0033440:intron 40.0%
TAGAAGCTTGTAGAAGCTGT+AGG - chr1_1:60946546-60946565 Msa0033440:intron 40.0%
TAAAAGAGAGGGAAGTCTAG+AGG - chr1_1:60946724-60946743 Msa0033440:CDS 40.0%
AAAAGAGAGGGAAGTCTAGA+GGG - chr1_1:60946725-60946744 Msa0033440:CDS 40.0%
TTTAGGAGAGAAGTTCTCAC+TGG - chr1_1:60946778-60946797 Msa0033440:CDS 40.0%
TGAGCTTAAGAGCTCTACAA+TGG + chr1_1:60946882-60946901 None:intergenic 40.0%
! CAAACTCTGAAAAAGCCCGA+TGG + chr1_1:60938955-60938974 None:intergenic 45.0%
CAGAAAAAGCCCACCCATTT+GGG + chr1_1:60938994-60939013 None:intergenic 45.0%
!! CAAATGGGTGGGCTTTTTCT+GGG - chr1_1:60938993-60939012 Msa0033440:CDS 45.0%
GGAACGTTACGTGATGCTTA+CGG - chr1_1:60939048-60939067 Msa0033440:CDS 45.0%
GGCAACTTTACACCGTGAAA+TGG - chr1_1:60939069-60939088 Msa0033440:CDS 45.0%
!! GCAGAAGTTGGTGACAAACA+AGG + chr1_1:60939394-60939413 None:intergenic 45.0%
TGAATTCGCTTCTGGGTCAT+TGG - chr1_1:60939453-60939472 Msa0033440:intron 45.0%
! TGAAGGTATGGGTATGGGAT+TGG - chr1_1:60939501-60939520 Msa0033440:intron 45.0%
! GAAGGTATGGGTATGGGATT+GGG - chr1_1:60939502-60939521 Msa0033440:intron 45.0%
! GAAGCACCTAAAGTACTAGG+AGG + chr1_1:60939568-60939587 None:intergenic 45.0%
! GCTGAAGCACCTAAAGTACT+AGG + chr1_1:60939571-60939590 None:intergenic 45.0%
GCAGGGTTAACGTCTCAAAA+CGG - chr1_1:60939974-60939993 Msa0033440:intron 45.0%
CAGGGTTAACGTCTCAAAAC+GGG - chr1_1:60939975-60939994 Msa0033440:intron 45.0%
TAACGTCTCAAAACGGGAGA+AGG - chr1_1:60939981-60940000 Msa0033440:intron 45.0%
TGGAGTCTGCTGTTAATGCA+AGG - chr1_1:60940019-60940038 Msa0033440:CDS 45.0%
TGAAGCCATCACACGAAACT+CGG + chr1_1:60940261-60940280 None:intergenic 45.0%
AAGATAGTAAGAGTTGGGGG+GGG + chr1_1:60941081-60941100 None:intergenic 45.0%
CCTTACAAGATGGCAAAACG+AGG + chr1_1:60941113-60941132 None:intergenic 45.0%
! CCTCGTTTTGCCATCTTGTA+AGG - chr1_1:60941110-60941129 Msa0033440:CDS 45.0%
TCGCATGAGACCTTACAAGA+TGG + chr1_1:60941123-60941142 None:intergenic 45.0%
CGATGCATGTGAGGTGTATT+GGG - chr1_1:60941140-60941159 Msa0033440:CDS 45.0%
GATGCATGTGAGGTGTATTG+GGG - chr1_1:60941141-60941160 Msa0033440:CDS 45.0%
ATGCATGTGAGGTGTATTGG+GGG - chr1_1:60941142-60941161 Msa0033440:CDS 45.0%
TCGGTCACACACAAAATGAC+CGG - chr1_1:60941262-60941281 Msa0033440:intron 45.0%
CACACAAAATGACCGGTCAT+AGG - chr1_1:60941269-60941288 Msa0033440:intron 45.0%
ACTCTCAACACACCTATGAC+CGG + chr1_1:60941284-60941303 None:intergenic 45.0%
GTGTGTTGAGAGTCTCACAT+TGG - chr1_1:60941291-60941310 Msa0033440:intron 45.0%
GTTGAGAGTCTCACATTGGA+CGG - chr1_1:60941295-60941314 Msa0033440:intron 45.0%
TTGAGAGTCTCACATTGGAC+GGG - chr1_1:60941296-60941315 Msa0033440:intron 45.0%
!! CTTCACAAGCCGGTTTTGTA+AGG - chr1_1:60941368-60941387 Msa0033440:intron 45.0%
! GCGGATTTTAAACATGGGCA+AGG + chr1_1:60942385-60942404 None:intergenic 45.0%
ATCTATTCTCCCTTGGAGGA+TGG - chr1_1:60942644-60942663 Msa0033440:intron 45.0%
GTATGTATTGCCATCCTCCA+AGG + chr1_1:60942657-60942676 None:intergenic 45.0%
CTGAAGCTGCTTGTGAACAA+AGG - chr1_1:60942963-60942982 Msa0033440:intron 45.0%
CAGCTCTTACAAACATCCCA+AGG + chr1_1:60943277-60943296 None:intergenic 45.0%
AGGAGTTGGGCATGGAAAAA+TGG + chr1_1:60944084-60944103 None:intergenic 45.0%
CAAAGACATCTGCAGGAGTT+GGG + chr1_1:60944097-60944116 None:intergenic 45.0%
ACAAAGACATCTGCAGGAGT+TGG + chr1_1:60944098-60944117 None:intergenic 45.0%
! GCTTGTATCAGAAAGCGTGA+AGG - chr1_1:60944698-60944717 Msa0033440:intron 45.0%
CACTAAACCTCACTTAGTGG+AGG + chr1_1:60945237-60945256 None:intergenic 45.0%
ATAATCGTAGAACCTCCGCA+AGG - chr1_1:60945282-60945301 Msa0033440:intron 45.0%
GTTCTTGAGCTCCAAGACTA+CGG + chr1_1:60945353-60945372 None:intergenic 45.0%
AGCTCAAGAACCGTGGTATA+TGG - chr1_1:60945362-60945381 Msa0033440:intron 45.0%
CAGAACCGAACCATATACCA+CGG + chr1_1:60945375-60945394 None:intergenic 45.0%
GATGTCAGCTTACTTTCCCA+TGG - chr1_1:60945394-60945413 Msa0033440:intron 45.0%
CTTGTGCTGTGTCTAGATTC+TGG - chr1_1:60945893-60945912 Msa0033440:CDS 45.0%
CGTCCAAAGGAGGTAAAAAC+AGG - chr1_1:60946203-60946222 Msa0033440:CDS 45.0%
!!! TGGCCTGTTTTTACCTCCTT+TGG + chr1_1:60946209-60946228 None:intergenic 45.0%
TTAAAGAGAGGGAAGCCTAG+AGG - chr1_1:60946617-60946636 Msa0033440:CDS 45.0%
TAAAGAGAGGGAAGCCTAGA+GGG - chr1_1:60946618-60946637 Msa0033440:CDS 45.0%
ACGAACGCCTTCAAGCGTAA+CGG + chr1_1:60938801-60938820 None:intergenic 50.0%
AAGACTCAGTCAGCGATGTG+AGG - chr1_1:60938910-60938929 Msa0033440:three_prime_UTR 50.0%
CCAGAAAAAGCCCACCCATT+TGG + chr1_1:60938995-60939014 None:intergenic 50.0%
!! CCAAATGGGTGGGCTTTTTC+TGG - chr1_1:60938992-60939011 Msa0033440:CDS 50.0%
GGGTAAACTGCTGCAGAAGT+TGG + chr1_1:60939406-60939425 None:intergenic 50.0%
ATGGGTATGGGATTGGGAAG+TGG - chr1_1:60939508-60939527 Msa0033440:intron 50.0%
TGGGTATGGGATTGGGAAGT+GGG - chr1_1:60939509-60939528 Msa0033440:intron 50.0%
! GCACCTAAAGTACTAGGAGG+TGG + chr1_1:60939565-60939584 None:intergenic 50.0%
ATCATTGGCAGAGTCTCTGC+AGG - chr1_1:60939858-60939877 Msa0033440:intron 50.0%
TACGATGGAAGAGGCCAAAC+AGG - chr1_1:60940128-60940147 Msa0033440:CDS 50.0%
GAAGAGGCCAAACAGGATAC+TGG - chr1_1:60940135-60940154 Msa0033440:CDS 50.0%
ACGCAGACCAGTATCCTGTT+TGG + chr1_1:60940145-60940164 None:intergenic 50.0%
CAAAGCCGAGTTTCGTGTGA+TGG - chr1_1:60940253-60940272 Msa0033440:intron 50.0%
TCGACCTGTAGGAGCTATTG+GGG + chr1_1:60940942-60940961 None:intergenic 50.0%
GTCGACCTGTAGGAGCTATT+GGG + chr1_1:60940943-60940962 None:intergenic 50.0%
TGTCGACCTGTAGGAGCTAT+TGG + chr1_1:60940944-60940963 None:intergenic 50.0%
ACAACGTGAGAGTCCATGTG+AGG + chr1_1:60940973-60940992 None:intergenic 50.0%
GCACATGGCGAAGATCAAAC+AGG + chr1_1:60941005-60941024 None:intergenic 50.0%
TTCGCCATGTGCACCATGAT+TGG - chr1_1:60941013-60941032 Msa0033440:intron 50.0%
CAAGCCAATCATGGTGCACA+TGG + chr1_1:60941020-60941039 None:intergenic 50.0%
CAAAGCGAGCAAGCCAATCA+TGG + chr1_1:60941029-60941048 None:intergenic 50.0%
AGATAGTAAGAGTTGGGGGG+GGG + chr1_1:60941080-60941099 None:intergenic 50.0%
GCGATGCATGTGAGGTGTAT+TGG - chr1_1:60941139-60941158 Msa0033440:CDS 50.0%
AACCGGGCAATGGTTGAGTT+AGG - chr1_1:60941170-60941189 Msa0033440:CDS 50.0%
CACCTAACTCAACCATTGCC+CGG + chr1_1:60941175-60941194 None:intergenic 50.0%
TGAGAGTCTCACATTGGACG+GGG - chr1_1:60941297-60941316 Msa0033440:intron 50.0%
TCACTCAGGACTTCACAAGC+CGG - chr1_1:60941358-60941377 Msa0033440:intron 50.0%
! GATCTGGGGTTGTTCAGTAG+TGG - chr1_1:60942096-60942115 Msa0033440:intron 50.0%
TTGGTAAGCACAACAGCCAC+AGG + chr1_1:60942228-60942247 None:intergenic 50.0%
TGGGCAAGGGGGAAAAATGA+GGG + chr1_1:60942371-60942390 None:intergenic 50.0%
ATGGGCAAGGGGGAAAAATG+AGG + chr1_1:60942372-60942391 None:intergenic 50.0%
!! GAAAGTGCTGGAACCATTGG+TGG + chr1_1:60942597-60942616 None:intergenic 50.0%
TGCTGCAGAAGCTGAACTAG+AGG - chr1_1:60942991-60943010 Msa0033440:intron 50.0%
CAAGGACTTTGTCCTTTGGC+CGG - chr1_1:60943223-60943242 Msa0033440:CDS 50.0%
GAGCACAATATACCGGCCAA+AGG + chr1_1:60943238-60943257 None:intergenic 50.0%
! CCACTTGCTGCAACAGATGT+TGG + chr1_1:60943983-60944002 None:intergenic 50.0%
CCAACATCTGTTGCAGCAAG+TGG - chr1_1:60943980-60943999 Msa0033440:intron 50.0%
CAAGGTCTCACAACCCCAAA+TGG + chr1_1:60944651-60944670 None:intergenic 50.0%
AGTAGGGGGCTAAGTAGTAG+AGG + chr1_1:60944849-60944868 None:intergenic 50.0%
TTCCCACCTGGCAAACTCTA+AGG + chr1_1:60945010-60945029 None:intergenic 50.0%
AGAGTTTGCCAGGTGGGAAT+TGG - chr1_1:60945011-60945030 Msa0033440:intron 50.0%
GGAATTGGCTGATGCTGAGA+AGG - chr1_1:60945026-60945045 Msa0033440:intron 50.0%
AAGCTACCCTCCACTAAGTG+AGG - chr1_1:60945227-60945246 Msa0033440:intron 50.0%
TCGATTACACAACCTTGCGG+AGG + chr1_1:60945297-60945316 None:intergenic 50.0%
!! TAGCGATATTGGTTCGGGCA+TGG - chr1_1:60945322-60945341 Msa0033440:intron 50.0%
! CTTTACTCGTCTAGGACCCT+AGG - chr1_1:60945835-60945854 Msa0033440:CDS 50.0%
GAGTTCACGGAAGAAGCTTG+AGG - chr1_1:60946052-60946071 Msa0033440:intron 50.0%
TGTCTGTTCTGACCGTCCAA+AGG - chr1_1:60946190-60946209 Msa0033440:CDS 50.0%
GGTAGGAGTTATCCAAACCC+TGG - chr1_1:60946829-60946848 Msa0033440:intron 50.0%
TTCCACAGGCAGGACATTTG+CGG + chr1_1:60947187-60947206 None:intergenic 50.0%
CTGTCCAAATGCTGTTCCAC+AGG + chr1_1:60947201-60947220 None:intergenic 50.0%
AACGACGCCGTTACGCTTGA+AGG - chr1_1:60938791-60938810 Msa0033440:three_prime_UTR 55.0%
AAGCCCACCCATTTGGGTCA+CGG + chr1_1:60938988-60939007 None:intergenic 55.0%
!! AATGGGGATGATGGACGAGC+AGG - chr1_1:60940295-60940314 Msa0033440:intron 55.0%
!! GGACGCAAGCTGGTTTGCAA+GGG + chr1_1:60940921-60940940 None:intergenic 55.0%
AGGTGGTACTGTCGACCTGT+AGG + chr1_1:60940953-60940972 None:intergenic 55.0%
GTCGACAGTACCACCTCACA+TGG - chr1_1:60940957-60940976 Msa0033440:intron 55.0%
ACGTGAGAGTCCATGTGAGG+TGG + chr1_1:60940970-60940989 None:intergenic 55.0%
ATAGTAAGAGTTGGGGGGGG+GGG + chr1_1:60941078-60941097 None:intergenic 55.0%
GATAGTAAGAGTTGGGGGGG+GGG + chr1_1:60941079-60941098 None:intergenic 55.0%
CAAGATGGCAAAACGAGGCC+CGG + chr1_1:60941108-60941127 None:intergenic 55.0%
GGTCTCATGCGATGCATGTG+AGG - chr1_1:60941131-60941150 Msa0033440:CDS 55.0%
GTGTATTGGGGGACGCTAAC+CGG - chr1_1:60941153-60941172 Msa0033440:CDS 55.0%
TGTATTGGGGGACGCTAACC+GGG - chr1_1:60941154-60941173 Msa0033440:CDS 55.0%
TTGTGTGTGACCGACCAGAG+AGG + chr1_1:60941256-60941275 None:intergenic 55.0%
GTCTCACATTGGACGGGGTT+TGG - chr1_1:60941302-60941321 Msa0033440:intron 55.0%
! TTGGTGGGCAGTCATCACTC+AGG - chr1_1:60941344-60941363 Msa0033440:intron 55.0%
!! TGAAAAGAAGCACCCGCCTG+TGG - chr1_1:60942209-60942228 Msa0033440:CDS 55.0%
TAAGCACAACAGCCACAGGC+GGG + chr1_1:60942224-60942243 None:intergenic 55.0%
GTAAGCACAACAGCCACAGG+CGG + chr1_1:60942225-60942244 None:intergenic 55.0%
AGGAGGTCAGGGACAATCAG+CGG + chr1_1:60942404-60942423 None:intergenic 55.0%
TGTTGCAGCAAGTGGCTGAG+AGG - chr1_1:60943988-60944007 Msa0033440:intron 55.0%
GTTGCAGCAAGTGGCTGAGA+GGG - chr1_1:60943989-60944008 Msa0033440:intron 55.0%
ACATCTGCAGGAGTTGGGCA+TGG + chr1_1:60944092-60944111 None:intergenic 55.0%
! CCACCTGGCAAACTCTAAGG+CGG + chr1_1:60945007-60945026 None:intergenic 55.0%
CGCCTTAGAGTTTGCCAGGT+GGG - chr1_1:60945005-60945024 Msa0033440:intron 55.0%
AGCATCAGCCAATTCCCACC+TGG + chr1_1:60945022-60945041 None:intergenic 55.0%
GCATGGATCAGCCGTAGTCT+TGG - chr1_1:60945339-60945358 Msa0033440:intron 55.0%
GTCTTGGAGCTCAAGAACCG+TGG - chr1_1:60945355-60945374 Msa0033440:intron 55.0%
CTGTTCTGACCGTCCAAAGG+AGG - chr1_1:60946193-60946212 Msa0033440:CDS 55.0%
AGGCAGGACATTTGCGGTGA+CGG + chr1_1:60947181-60947200 None:intergenic 55.0%
CCAAATGCTGTTCCACAGGC+AGG + chr1_1:60947197-60947216 None:intergenic 55.0%
CCTGCCTGTGGAACAGCATT+TGG - chr1_1:60947194-60947213 Msa0033440:CDS 55.0%
ACACGGGCCGTGACCCAAAT+GGG - chr1_1:60938978-60938997 Msa0033440:CDS 60.0%
!! GTGGGCTTTTTCTGGGCCGA+AGG - chr1_1:60939000-60939019 Msa0033440:CDS 60.0%
TGGACGAGCAGGTGAAGCGA+TGG - chr1_1:60940306-60940325 Msa0033440:intron 60.0%
!! GGGACGCAAGCTGGTTTGCA+AGG + chr1_1:60940922-60940941 None:intergenic 60.0%
GAGCTATTGGGGACGCAAGC+TGG + chr1_1:60940931-60940950 None:intergenic 60.0%
GCGTCCCCAATAGCTCCTAC+AGG - chr1_1:60940935-60940954 Msa0033440:intron 60.0%
!! GGGGGGGGCTGTTTTGTTAC+GGG + chr1_1:60941056-60941075 None:intergenic 60.0%
!! GGGGGGGGGCTGTTTTGTTA+CGG + chr1_1:60941057-60941076 None:intergenic 60.0%
TAGTAAGAGTTGGGGGGGGG+GGG + chr1_1:60941077-60941096 None:intergenic 60.0%
!! CAAACTCTAAGGCGGCTGCG+AGG + chr1_1:60944999-60945018 None:intergenic 60.0%
CAGCCGCCTTAGAGTTTGCC+AGG - chr1_1:60945001-60945020 Msa0033440:intron 60.0%
CCGCCTTAGAGTTTGCCAGG+TGG - chr1_1:60945004-60945023 Msa0033440:intron 60.0%
CACCGCAAATGTCCTGCCTG+TGG - chr1_1:60947182-60947201 Msa0033440:CDS 60.0%
GACACGGGCCGTGACCCAAA+TGG - chr1_1:60938977-60938996 Msa0033440:CDS 65.0%
GGGCCGTGACCCAAATGGGT+GGG - chr1_1:60938982-60939001 Msa0033440:CDS 65.0%
AGTAAGAGTTGGGGGGGGGG+GGG + chr1_1:60941076-60941095 None:intergenic 65.0%
TCTGTTGGGGCCCCCGCTAT+CGG - chr1_1:60941229-60941248 Msa0033440:CDS 65.0%
ACCAGAGAGGCCCGATAGCG+GGG + chr1_1:60941243-60941262 None:intergenic 65.0%
GACCAGAGAGGCCCGATAGC+GGG + chr1_1:60941244-60941263 None:intergenic 65.0%
CGACCAGAGAGGCCCGATAG+CGG + chr1_1:60941245-60941264 None:intergenic 65.0%
CGCTATCGGGCCTCTCTGGT+CGG - chr1_1:60941243-60941262 Msa0033440:CDS 65.0%
CGGGCCGTGACCCAAATGGG+TGG - chr1_1:60938981-60939000 Msa0033440:CDS 70.0%
TAAGAGTTGGGGGGGGGGGG+GGG + chr1_1:60941074-60941093 None:intergenic 70.0%
GTAAGAGTTGGGGGGGGGGG+GGG + chr1_1:60941075-60941094 None:intergenic 70.0%
GGGGGACGCTAACCGGGCAA+TGG - chr1_1:60941160-60941179 Msa0033440:CDS 70.0%
CTGTTGGGGCCCCCGCTATC+GGG - chr1_1:60941230-60941249 Msa0033440:CDS 70.0%
! CCAGAGAGGCCCGATAGCGG+GGG + chr1_1:60941242-60941261 None:intergenic 70.0%
AAGAGTTGGGGGGGGGGGGG+GGG + chr1_1:60941073-60941092 None:intergenic 75.0%
CCCCCGCTATCGGGCCTCTC+TGG - chr1_1:60941239-60941258 Msa0033440:CDS 75.0%
! AGAGTTGGGGGGGGGGGGGG+GGG + chr1_1:60941072-60941091 None:intergenic 80.0%
! GAGTTGGGGGGGGGGGGGGG+GGG + chr1_1:60941071-60941090 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 60938731 60947487 60938731 ID=Msa0033440;Name=Msa0033440
chr1_1 mRNA 60938731 60947487 60938731 ID=Msa0033440-mRNA-1;Parent=Msa0033440;Name=Msa0033440-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.73|0.68|1|0.66|0.56|16|240|790
chr1_1 exon 60938731 60939102 60938731 ID=Msa0033440-mRNA-1:exon:19120;Parent=Msa0033440-mRNA-1
chr1_1 exon 60940004 60940166 60940004 ID=Msa0033440-mRNA-1:exon:19119;Parent=Msa0033440-mRNA-1
chr1_1 exon 60941070 60941272 60941070 ID=Msa0033440-mRNA-1:exon:19118;Parent=Msa0033440-mRNA-1
chr1_1 exon 60941382 60941519 60941382 ID=Msa0033440-mRNA-1:exon:19117;Parent=Msa0033440-mRNA-1
chr1_1 exon 60942190 60942276 60942190 ID=Msa0033440-mRNA-1:exon:19116;Parent=Msa0033440-mRNA-1
chr1_1 exon 60942387 60942459 60942387 ID=Msa0033440-mRNA-1:exon:19115;Parent=Msa0033440-mRNA-1
chr1_1 exon 60943174 60943365 60943174 ID=Msa0033440-mRNA-1:exon:19114;Parent=Msa0033440-mRNA-1
chr1_1 exon 60944130 60944206 60944130 ID=Msa0033440-mRNA-1:exon:19113;Parent=Msa0033440-mRNA-1
chr1_1 exon 60944548 60944619 60944548 ID=Msa0033440-mRNA-1:exon:19112;Parent=Msa0033440-mRNA-1
chr1_1 exon 60945818 60945978 60945818 ID=Msa0033440-mRNA-1:exon:19111;Parent=Msa0033440-mRNA-1
chr1_1 exon 60946062 60946248 60946062 ID=Msa0033440-mRNA-1:exon:19110;Parent=Msa0033440-mRNA-1
chr1_1 exon 60946339 60946437 60946339 ID=Msa0033440-mRNA-1:exon:19109;Parent=Msa0033440-mRNA-1
chr1_1 exon 60946597 60946802 60946597 ID=Msa0033440-mRNA-1:exon:19108;Parent=Msa0033440-mRNA-1
chr1_1 exon 60946839 60947024 60946839 ID=Msa0033440-mRNA-1:exon:19107;Parent=Msa0033440-mRNA-1
chr1_1 exon 60947040 60947249 60947040 ID=Msa0033440-mRNA-1:exon:19106;Parent=Msa0033440-mRNA-1
chr1_1 exon 60947301 60947487 60947301 ID=Msa0033440-mRNA-1:exon:19105;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60947301 60947487 60947301 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60947040 60947249 60947040 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60946839 60947024 60946839 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60946597 60946802 60946597 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60946339 60946437 60946339 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60946062 60946248 60946062 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60945818 60945978 60945818 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60944548 60944619 60944548 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60944130 60944206 60944130 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60943174 60943365 60943174 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60942387 60942459 60942387 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60942190 60942276 60942190 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60941382 60941519 60941382 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60941070 60941272 60941070 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60940004 60940166 60940004 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 CDS 60938971 60939102 60938971 ID=Msa0033440-mRNA-1:cds;Parent=Msa0033440-mRNA-1
chr1_1 three_prime_UTR 60938731 60938970 60938731 ID=Msa0033440-mRNA-1:three_prime_utr;Parent=Msa0033440-mRNA-1
Gene Sequence

>Msa0033440

ATGTCAAAGCTTCTTCATCTCTTTCAGTCACTTTCCGATGCAACAATTGTTCGTATTCGAAACGACGCCGTTACGCTTGAAGGCGTTCGTAAAATCATCTCCAACGATGAATCTTTTCTGTTAGGACTCGCTTGTGCTGAGTTCGCTGAGACTCTTCGTCTCGTTGCGAACTCAGTCACAAGACTCAAGTTTGCTGACACGGGCCGTGACCCAAATGGGTGGGCTTTTTCTGGGCCGAAGGAAATTGAAGCTAAGTTTAGAAAAATGGAACGTTACGTGATGCTTACGGCAACTTTACACCGTGAAATGGAAGAGCTTTCTGTTTTGGAAAATGGGTTTAGAAAAGCTTTGAATTTGAATCATCATCATCATCATCATCATCGTAGGAATAGTTGTAGTTCTTTGGGTGTTGGAAAAGAACAGAAAATTTATGAACTTCAACAGAAGATTTGTTGGCAGAAACAAGAAGTTAAGGATCTGAAAGATAGGTGTTTATGGAGTAGAAGTTTTGATGGTGTTGTTTTGTTACTTGTGAGGTTTTGTTTCACTGTTTTAGCAAGGATTAAGGTTGTGTTTGGGATTGCAGTTTACCCATCTGATCAGAATCAAAATTCTTGTCATGAATTCGCTTCTGGGTCATTGGAAAGCTCAGAGCTTGATAAGATCAATGAAGGTATGGGTATGGGATTGGGAAGTGGGTTTTTTGAGTCAAATTCAAAGCTTTTGAAACCACCTCCTAGTACTTTAGGTGCTTCAGCTTTGGCTTTACACTATGCAAATTTGATCATATATGTACGCAATTCCCGAGTATACTCTTTGGCAAATGATCAACTTCAACATTGGATTGCTGAATTGGACAGATATAAATCATTGGCAGAGTCTCTGCAGGCTGGCAGGGTTAACGTCTCAAAACGGGAGAAGGAGTTGAAGTTGAAATTGGAGTCTGCTGTTAATGCAAGGCATATCCATAACAATTCTGACTCTAGGATTGATGAGCTCAAGCTTCAATTGCAAAAGTGTATTATTGAAAAGAATGATCTTGAAATTACGATGGAAGAGGCCAAACAGGATACTGGGAGAAAAGATATCAAAGCCGAGTTTCGTGTGATGGCTTCAGCTTTATCTAAAGAAATGGGGATGATGGACGAGCAGGTGAAGCGATGGAAAGATGCAGCTCTTGAAGCTGTATCATTACGTGAGAAAGCGCATTCACTAAGAGCAACATTGAGTGGAAAGACAAGCGAACTCAAGAGCCTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATGAAGTCTACAAAAGCATTGATTGAAAAGTTACAGGAGGAGAATCGGGAGTTAGAATTTGTTTTGGATATGTATGGCCTAGAAGATTATCAGAAAAGCTTGCCAGAAGTTAGAGAATCTGAAAGGAAAGCTCGCTCTCAAGCTGAAATGCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTGCTGCTGCAGAAGCTGAACTAGAGGAGTTAAGGGCCCAGTTTGATGAAAATGAAAGAAAAAATCTGGAGATGACTGAGGCTATTAAAGTTAAAGAGGCTGAGGCAATAACCTATATATCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAAGTGGCTGAGAGGGATGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAATTACATAGCACTTTACTGTCTGAACAGCAAGCCTTAGCTGATCAACTTCAACAGATTAATTCTTTGATAGAAAATTCAAAGATGAAGATTGTAAATAGTGAAAAACAGATCGAATGCCTTCTATCAGAAGCCGCTAAATGTACTCAAGATGAAAAACACCTCGCAGCCGCCTTAGAGTTTGCCAGGTGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTGTTGCTTCAGCTTCAGAGAAAGAGTACGACCAAATTCAGAAAGATGTGGAAGCTTGTGAAAAGGAATTGGACAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAATGCAAGTGAACAACCAAATTGCTGAGCTGAATTCTGAAGGCAGAAAAACTGCAGTACAACAACTTGAAGAAGAAATAAGAGTTTGTAAGAACATGATCAAGTGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTGTGAAGTGCTATCATCTGTTCTGCAATCCATGTATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGCGATGTTCGTTTTGTTAAAATATGA
Protein sequence

>Msa0033440

MSKLLHLFQSLSDATIVRIRNDAVTLEGVRKIISNDESFLLGLACAEFAETLRLVANSVTRLKFADTGRDPNGWAFSGPKEIEAKFRKMERYVMLTATLHREMEELSVLENGFRKALNLNHHHHHHHRRNSCSSLGVGKEQKIYELQQKICWQKQEVKDLKDRCLWSRSFDGVVLLLVRFCFTVLARIKVVFGIAVYPSDQNQNSCHEFASGSLESSELDKINEGMGMGLGSGFFESNSKLLKPPPSTLGASALALHYANLIIYVRNSRVYSLANDQLQHWIAELDRYKSLAESLQAGRVNVSKREKELKLKLESAVNARHIHNNSDSRIDELKLQLQKCIIEKNDLEITMEEAKQDTGRKDIKAEFRVMASALSKEMGMMDEQVKRWKDAALEAVSLREKAHSLRATLSGKTSELKSLANKCAEQVLEMKSTKALIEKLQEENRELEFVLDMYGLEDYQKSLPEVRESERKARSQAEMLKNALDEHGLELRVRAANEAEAACEQRLAAAEAELEELRAQFDENERKNLEMTEAIKVKEAEAITYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSTLLSEQQALADQLQQINSLIENSKMKIVNSEKQIECLLSEAAKCTQDEKHLAAALEFARWELADAEKELKLLKSVASASEKEYDQIQKDVEACEKELDSERSSRKKLEEELMQVNNQIAELNSEGRKTAVQQLEEEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI*