Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092820 | XP_003603190.1 | 97.772 | 359 | 6 | 1 | 1 | 359 | 1 | 357 | 0.0 | 720 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092820 | sp|Q8RUF8|NILP3_ARATH | 86.424 | 302 | 41 | 0 | 57 | 358 | 67 | 368 | 0.0 | 538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092820 | G7J8D4 | 97.772 | 359 | 6 | 1 | 1 | 359 | 1 | 357 | 0.0 | 720 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092820 | Msa0472960 | 0.801992 | 6.930436e-49 | -8.615850e-47 |
| Msa0092820 | Msa0476390 | 0.905775 | 3.004813e-80 | -8.615850e-47 |
| Msa0092820 | Msa0482940 | -0.807381 | 5.196831e-50 | -8.615850e-47 |
| Msa0092820 | Msa0520420 | 0.872100 | 4.121864e-67 | -8.615850e-47 |
| Msa0092820 | Msa0566350 | -0.800231 | 1.587895e-48 | -8.615850e-47 |
| Msa0092820 | Msa0566750 | -0.801329 | 9.476736e-49 | -8.615850e-47 |
| Msa0092820 | Msa1016910 | -0.811078 | 8.381631e-51 | -8.615850e-47 |
| Msa0092820 | Msa1058170 | -0.805699 | 1.177005e-49 | -8.615850e-47 |
| Msa0092820 | Msa1080330 | 0.825302 | 5.048117e-54 | -8.615850e-47 |
| Msa0092820 | Msa1156150 | 0.823485 | 1.350787e-53 | -8.615850e-47 |
| Msa0092820 | Msa1196610 | 0.827561 | 1.461308e-54 | -8.615850e-47 |
| Msa0092820 | Msa1242580 | 0.814313 | 1.641638e-51 | -8.615850e-47 |
| Msa0092820 | Msa1370590 | -0.800363 | 1.492464e-48 | -8.615850e-47 |
| Msa0092820 | Msa1384100 | -0.804352 | 2.250973e-49 | -8.615850e-47 |
| Msa0092820 | Msa1401990 | -0.805309 | 1.420366e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092820 | MtrunA17_Chr3g0136101 | 97.772 | 359 | 6 | 1 | 1 | 359 | 1 | 357 | 0.0 | 720 |
| Msa0092820 | MtrunA17_Chr1g0213231 | 32.721 | 272 | 172 | 5 | 79 | 344 | 50 | 316 | 6.54e-45 | 157 |
| Msa0092820 | MtrunA17_Chr2g0321561 | 26.190 | 294 | 188 | 10 | 77 | 351 | 8 | 291 | 3.31e-19 | 87.0 |
| Msa0092820 | MtrunA17_Chr4g0049861 | 27.778 | 252 | 139 | 11 | 52 | 284 | 78 | 305 | 3.64e-12 | 67.0 |
| Msa0092820 | MtrunA17_Chr4g0026041 | 26.481 | 287 | 169 | 9 | 86 | 340 | 39 | 315 | 7.65e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092820 | AT5G12040.1 | 86.424 | 302 | 41 | 0 | 57 | 358 | 67 | 368 | 0.0 | 538 |
| Msa0092820 | AT5G12040.2 | 86.222 | 225 | 31 | 0 | 57 | 281 | 67 | 291 | 1.17e-138 | 396 |
| Msa0092820 | AT4G08790.1 | 30.650 | 323 | 189 | 8 | 26 | 343 | 10 | 302 | 6.48e-41 | 146 |
| Msa0092820 | AT2G27450.1 | 26.132 | 287 | 183 | 10 | 84 | 351 | 16 | 292 | 2.01e-21 | 93.6 |
| Msa0092820 | AT2G27450.2 | 26.022 | 269 | 170 | 10 | 102 | 351 | 61 | 319 | 1.54e-18 | 85.9 |
| Msa0092820 | AT3G44310.1 | 29.412 | 289 | 155 | 11 | 74 | 326 | 21 | 296 | 2.36e-17 | 82.4 |
| Msa0092820 | AT3G44310.3 | 29.412 | 289 | 155 | 11 | 74 | 326 | 21 | 296 | 2.36e-17 | 82.4 |
| Msa0092820 | AT3G44320.1 | 26.480 | 321 | 172 | 13 | 74 | 350 | 21 | 321 | 2.78e-14 | 73.6 |
| Msa0092820 | AT3G44300.1 | 27.899 | 276 | 151 | 10 | 86 | 326 | 27 | 289 | 9.75e-14 | 72.0 |
| Msa0092820 | AT5G22300.1 | 27.241 | 290 | 163 | 10 | 86 | 340 | 45 | 321 | 1.67e-13 | 71.2 |
| Msa0092820 | AT5G64370.1 | 28.740 | 254 | 138 | 11 | 50 | 284 | 72 | 301 | 6.07e-12 | 67.0 |
Find 124 sgRNAs with CRISPR-Local
Find 420 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAATTTGTTAGGAAATT+TGG | 0.055698 | 1_2:-75624060 | Msa0092820:intron |
| GTTACTAGCATTTCTCAAAT+AGG | 0.209967 | 1_2:-75619311 | Msa0092820:three_prime_UTR |
| GCTCACTTGCTCTGCTATCC+TGG | 0.248326 | 1_2:-75622251 | Msa0092820:CDS |
| CACAGGCCGAAATGGATTAA+AGG | 0.259465 | 1_2:-75619133 | Msa0092820:three_prime_UTR |
| TTTCTTTCAGTTCAAGGTTT+GGG | 0.274278 | 1_2:+75619396 | None:intergenic |
| TACTGGTGGTTATGTGGCTT+GGG | 0.284257 | 1_2:-75619984 | Msa0092820:CDS |
| TATAACACTTGTTGTGTCTT+TGG | 0.284922 | 1_2:-75623878 | Msa0092820:CDS |
| CTTTCTTTCAGTTCAAGGTT+TGG | 0.288178 | 1_2:+75619395 | None:intergenic |
| TCTTTCTTTCTTTCAGTTCA+AGG | 0.304105 | 1_2:+75619390 | None:intergenic |
| GTGGCAGTTTGGAGAAGTTT+TGG | 0.305686 | 1_2:-75619779 | Msa0092820:intron |
| TTACTAGCATTTCTCAAATA+GGG | 0.312739 | 1_2:-75619310 | Msa0092820:three_prime_UTR |
| AAACACTACCTTACGGTGTT+TGG | 0.316443 | 1_2:+75623835 | None:intergenic |
| TTAAAACCTTTAATCCATTT+CGG | 0.316729 | 1_2:+75619127 | None:intergenic |
| GAGAAGGGGAAGAGTGGATT+TGG | 0.332013 | 1_2:+75624506 | None:intergenic |
| GCGTATATCATTGCTAGTTC+TGG | 0.334972 | 1_2:+75622774 | None:intergenic |
| CGAGAAAATTCATAGGAATC+AGG | 0.340748 | 1_2:+75618901 | None:intergenic |
| GTAATCGATTTCAGCTATAA+TGG | 0.341614 | 1_2:+75619732 | None:intergenic |
| TGAAAGAAAGAAAGAAATAA+AGG | 0.359160 | 1_2:-75619382 | Msa0092820:three_prime_UTR |
| GGAAAACTATCATTTGAATA+AGG | 0.365261 | 1_2:+75624031 | None:intergenic |
| TAGGCATATGCTATGACATT+AGG | 0.366303 | 1_2:-75622800 | Msa0092820:CDS |
| CTTTCATTTCAGTTCAAGAT+TGG | 0.367269 | 1_2:-75624255 | Msa0092820:intron |
| GGTTCTATTCCTGAACGTTC+TGG | 0.367317 | 1_2:-75623911 | Msa0092820:CDS |
| CTCACTTGCTCTGCTATCCT+GGG | 0.376833 | 1_2:-75622250 | Msa0092820:CDS |
| CTCTTCCCCTTCTCCAATCA+TGG | 0.382466 | 1_2:-75624497 | Msa0092820:CDS |
| GGAGTGGGCAAGGGAATTGC+GGG | 0.385327 | 1_2:+75624430 | None:intergenic |
| TGGGGTCACTCCACTCTTGT+TGG | 0.388298 | 1_2:-75619965 | Msa0092820:CDS |
| GTCAGATTCACAGGCCGAAA+TGG | 0.396742 | 1_2:-75619141 | Msa0092820:three_prime_UTR |
| TTCAATGAAGGTAATCTTCC+CGG | 0.401110 | 1_2:+75623451 | None:intergenic |
| TGGCAACCTGTTCGCCTGCT+CGG | 0.404559 | 1_2:-75620012 | Msa0092820:CDS |
| TGAAATCGATTACTCAATAC+TGG | 0.406044 | 1_2:-75619722 | Msa0092820:CDS |
| CTACTGGTGGTTATGTGGCT+TGG | 0.411153 | 1_2:-75619985 | Msa0092820:CDS |
| AGGATCAGGCTATGAAGAAT+TGG | 0.413123 | 1_2:-75619181 | Msa0092820:three_prime_UTR |
| ATGATGAATTTATTCACAAC+TGG | 0.416665 | 1_2:+75619063 | None:intergenic |
| TTTGTTGTTAATTGTGATCA+TGG | 0.420555 | 1_2:-75619333 | Msa0092820:three_prime_UTR |
| TTGCAGGGCTACAGATAATC+AGG | 0.423169 | 1_2:-75620599 | Msa0092820:intron |
| ACGTGCTAATTCTGAATTGA+TGG | 0.426230 | 1_2:+75624459 | None:intergenic |
| TCAATATCCTCAGCATAAAC+AGG | 0.430758 | 1_2:+75624010 | None:intergenic |
| GCGAGGTGATCTTTATCAAT+TGG | 0.430848 | 1_2:-75619560 | Msa0092820:CDS |
| GGCAACCTGTTCGCCTGCTC+GGG | 0.444331 | 1_2:-75620011 | Msa0092820:CDS |
| GATGATGAAGCAGCCATGAT+TGG | 0.453282 | 1_2:+75624484 | None:intergenic |
| TGCAATAACTCCCAATGTAA+TGG | 0.462653 | 1_2:+75622206 | None:intergenic |
| GAATTCAATGAATGTAAGAA+AGG | 0.463904 | 1_2:-75624699 | Msa0092820:five_prime_UTR |
| TCGCCTGCTCGGGATACTAC+TGG | 0.464095 | 1_2:-75620001 | Msa0092820:CDS |
| AGCATTTCTCAAATAGGGAT+TGG | 0.468207 | 1_2:-75619305 | Msa0092820:three_prime_UTR |
| GAGCGGGACTTCTATATTTG+AGG | 0.471290 | 1_2:-75619505 | Msa0092820:three_prime_UTR |
| AGTATCCCGAGCAGGCGAAC+AGG | 0.473681 | 1_2:+75620006 | None:intergenic |
| GTGAATTATGTCGTCTTCAC+AGG | 0.474233 | 1_2:-75619201 | Msa0092820:three_prime_UTR |
| GGTGAGAGGTGGAGTGGGCA+AGG | 0.478785 | 1_2:+75624420 | None:intergenic |
| ATTCAAGACGCTGCTGCAAA+GGG | 0.480808 | 1_2:-75624171 | Msa0092820:CDS |
| GAATCATTGACTCTTACTGC+TGG | 0.481952 | 1_2:-75623431 | Msa0092820:CDS |
| GAATCAGGTAGATAATGATT+AGG | 0.486331 | 1_2:+75618916 | None:intergenic |
| CATACAGAGGTTGGACGCAT+TGG | 0.490536 | 1_2:-75622825 | Msa0092820:intron |
| TATGTCGTCTTCACAGGATC+AGG | 0.493139 | 1_2:-75619195 | Msa0092820:three_prime_UTR |
| GACAACTGGTCCATTACATT+GGG | 0.493686 | 1_2:-75622216 | Msa0092820:CDS |
| TTGAAAATTACCATCGTTGG+TGG | 0.494901 | 1_2:-75623932 | Msa0092820:CDS |
| TATTCAAGACGCTGCTGCAA+AGG | 0.495759 | 1_2:-75624172 | Msa0092820:CDS |
| GGATACTACTGGTGGTTATG+TGG | 0.495937 | 1_2:-75619990 | Msa0092820:CDS |
| AGACCTGTGTCAACAATTGT+TGG | 0.497826 | 1_2:+75623401 | None:intergenic |
| CCTCGCCGTTGCTTAGTCAC+AGG | 0.504775 | 1_2:+75619577 | None:intergenic |
| TCAATGAAGGTAATCTTCCC+GGG | 0.505609 | 1_2:+75623452 | None:intergenic |
| ACTCTCAGTCACCTCCGATA+AGG | 0.512664 | 1_2:-75624223 | Msa0092820:CDS |
| GAGGCTGAATTCCAACTGAA+TGG | 0.513087 | 1_2:-75619527 | Msa0092820:exon |
| CATCCAATTACCATAAAAGA+TGG | 0.518222 | 1_2:+75619441 | None:intergenic |
| AATCATTGACTCTTACTGCT+GGG | 0.519165 | 1_2:-75623430 | Msa0092820:CDS |
| AGTAGACTCATGCAGTTGAA+TGG | 0.522069 | 1_2:-75618976 | Msa0092820:three_prime_UTR |
| TGGAGTGGGCAAGGGAATTG+CGG | 0.522797 | 1_2:+75624429 | None:intergenic |
| AATCGATCTCCAGAACGTTC+AGG | 0.523578 | 1_2:+75623902 | None:intergenic |
| GAATTCCAACTGAATGGAGC+GGG | 0.530118 | 1_2:-75619521 | Msa0092820:exon |
| AATTCAATGAATGTAAGAAA+GGG | 0.530666 | 1_2:-75624698 | Msa0092820:five_prime_UTR |
| TGTTGTGTCTTTGGCACCGA+CGG | 0.531168 | 1_2:-75623869 | Msa0092820:CDS |
| GGGAGTTATTGCAGAGGGCA+AGG | 0.531735 | 1_2:-75622196 | Msa0092820:intron |
| ACAACATATGTCAGATTCAC+AGG | 0.535017 | 1_2:-75619150 | Msa0092820:three_prime_UTR |
| TGACAACTGGTCCATTACAT+TGG | 0.539606 | 1_2:-75622217 | Msa0092820:CDS |
| GAAGCAGCCATGATTGGAGA+AGG | 0.544097 | 1_2:+75624490 | None:intergenic |
| TCATTTCCGACAGTTATATG+TGG | 0.544179 | 1_2:-75620032 | Msa0092820:intron |
| AAGAGTCAATGATTCAATGA+AGG | 0.545334 | 1_2:+75623439 | None:intergenic |
| AATGAACTTGACATAAGTAC+AGG | 0.545497 | 1_2:-75619257 | Msa0092820:three_prime_UTR |
| TTGTTGAAAATTACCATCGT+TGG | 0.550102 | 1_2:-75623935 | Msa0092820:CDS |
| GAGGTTGGACGCATTGGCAT+AGG | 0.552435 | 1_2:-75622819 | Msa0092820:CDS |
| GTGAGAGGTGGAGTGGGCAA+GGG | 0.553132 | 1_2:+75624421 | None:intergenic |
| TATGCTGAGGATATTGATGC+TGG | 0.554816 | 1_2:-75624004 | Msa0092820:CDS |
| GAAGTCCCGCTCCATTCAGT+TGG | 0.559358 | 1_2:+75619516 | None:intergenic |
| ATCAATTGGTAGATTTGCAG+AGG | 0.563090 | 1_2:-75619546 | Msa0092820:CDS |
| GCCTTGGTGAGAGGTGGAGT+GGG | 0.566886 | 1_2:+75624415 | None:intergenic |
| CTGGTGCAAGTATGCTCTGA+GGG | 0.566903 | 1_2:+75619082 | None:intergenic |
| TGATTGGAGAAGGGGAAGAG+TGG | 0.572674 | 1_2:+75624500 | None:intergenic |
| AAGCAGCCATGATTGGAGAA+GGG | 0.580639 | 1_2:+75624491 | None:intergenic |
| CTCGCCGTTGCTTAGTCACA+GGG | 0.581681 | 1_2:+75619578 | None:intergenic |
| ACTCAAAGCCAAACACCGTA+AGG | 0.582233 | 1_2:-75623843 | Msa0092820:intron |
| AGCAGCCATGATTGGAGAAG+GGG | 0.582782 | 1_2:+75624492 | None:intergenic |
| ATGCTGTATTATTGATGATG+TGG | 0.585097 | 1_2:-75619421 | Msa0092820:three_prime_UTR |
| ACATTGGGAGTTATTGCAGA+GGG | 0.586708 | 1_2:-75622201 | Msa0092820:CDS |
| AAGTTCAGAAAGCATAGCAG+TGG | 0.587368 | 1_2:+75623964 | None:intergenic |
| ATCATTGACTCTTACTGCTG+GGG | 0.591521 | 1_2:-75623429 | Msa0092820:CDS |
| ACTCAATACTGGAACAGAGA+AGG | 0.592203 | 1_2:-75619711 | Msa0092820:intron |
| GCATGTGCATGCTTCTTACA+AGG | 0.595540 | 1_2:+75619463 | None:intergenic |
| GTTGTCATGTTAAAAGCCCC+AGG | 0.595642 | 1_2:+75622233 | None:intergenic |
| ACTGGTGGTTATGTGGCTTG+GGG | 0.596481 | 1_2:-75619983 | Msa0092820:CDS |
| TTCTCGACGAGATGACTGGA+AGG | 0.602873 | 1_2:-75624724 | None:intergenic |
| TCAGAAAGCATAGCAGTGGA+AGG | 0.605347 | 1_2:+75623968 | None:intergenic |
| TGCCTTGGTGAGAGGTGGAG+TGG | 0.608042 | 1_2:+75624414 | None:intergenic |
| GTGGGCAAGGGAATTGCGGG+TGG | 0.616233 | 1_2:+75624433 | None:intergenic |
| TTTGGCTACTACAGAACATG+AGG | 0.618125 | 1_2:-75619761 | Msa0092820:CDS |
| TGAATTCCAACTGAATGGAG+CGG | 0.625310 | 1_2:-75619522 | Msa0092820:exon |
| CCACCAGTAGTATCCCGAGC+AGG | 0.629033 | 1_2:+75619998 | None:intergenic |
| GCAATGATATACGCAGCAAG+AGG | 0.636279 | 1_2:-75622765 | Msa0092820:intron |
| ACTTACAGGACCAACAAGAG+TGG | 0.638636 | 1_2:+75619955 | None:intergenic |
| GAACTTGCCTTGGTGAGAGG+TGG | 0.644025 | 1_2:+75624409 | None:intergenic |
| TCACTTGCTCTGCTATCCTG+GGG | 0.646670 | 1_2:-75622249 | Msa0092820:CDS |
| AGACTCATGCAGTTGAATGG+AGG | 0.651457 | 1_2:-75618973 | Msa0092820:three_prime_UTR |
| TTAAACTTACAATTTGCAGG+TGG | 0.653041 | 1_2:-75619108 | Msa0092820:three_prime_UTR |
| GCCGTTGCTTAGTCACAGGG+AGG | 0.656884 | 1_2:+75619581 | None:intergenic |
| GCCCACTCCACCTCTCACCA+AGG | 0.660351 | 1_2:-75624416 | Msa0092820:intron |
| TGAGAACTTGCCTTGGTGAG+AGG | 0.665878 | 1_2:+75624406 | None:intergenic |
| TACATTGGGAGTTATTGCAG+AGG | 0.666585 | 1_2:-75622202 | Msa0092820:CDS |
| ACCTCCCTGTGACTAAGCAA+CGG | 0.673427 | 1_2:-75619582 | Msa0092820:CDS |
| ACTCCAACAATTGTTGACAC+AGG | 0.676568 | 1_2:-75623404 | Msa0092820:intron |
| CCTGCTCGGGATACTACTGG+TGG | 0.684846 | 1_2:-75619998 | Msa0092820:CDS |
| CAATGAAGGTAATCTTCCCG+GGG | 0.685426 | 1_2:+75623453 | None:intergenic |
| AGGAATAGAACCACCAACGA+TGG | 0.688450 | 1_2:+75623922 | None:intergenic |
| ACTTGACATAAGTACAGGAG+TGG | 0.689341 | 1_2:-75619252 | Msa0092820:three_prime_UTR |
| ACTGGTGCAAGTATGCTCTG+AGG | 0.692724 | 1_2:+75619081 | None:intergenic |
| GCTGAGGATATTGATGCTGG+TGG | 0.700623 | 1_2:-75624001 | Msa0092820:CDS |
| CCTGTGACTAAGCAACGGCG+AGG | 0.768237 | 1_2:-75619577 | Msa0092820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTAATTACAAATAGA+AGG | - | chr1_2:75623709-75623728 | Msa0092820:intron | 10.0% |
| !!! | TAATCACTTTTTTTATGTTT+TGG | + | chr1_2:75618915-75618934 | None:intergenic | 15.0% |
| !! | AATAAAATAAAAAAACTCAC+AGG | + | chr1_2:75619440-75619459 | None:intergenic | 15.0% |
| !!! | GTGAGTTTTTTTATTTTATT+TGG | - | chr1_2:75619440-75619459 | Msa0092820:three_prime_UTR | 15.0% |
| !!! | TTTTGTGTAATTCTTATTTT+GGG | - | chr1_2:75621004-75621023 | Msa0092820:intron | 15.0% |
| !! | AAAGAAACTTATTTATTCTT+TGG | - | chr1_2:75621093-75621112 | Msa0092820:intron | 15.0% |
| !! | TTATTATTATTTGATTACTC+AGG | - | chr1_2:75623957-75623976 | Msa0092820:CDS | 15.0% |
| !!! | TACATATTTTGTTAAATCAA+AGG | + | chr1_2:75624555-75624574 | None:intergenic | 15.0% |
| !! | AATTCAATGAATGTAAGAAA+GGG | - | chr1_2:75618868-75618887 | Msa0092820:three_prime_UTR | 20.0% |
| !! | AAATGAAAGAAAATAACATG+AGG | + | chr1_2:75619300-75619319 | None:intergenic | 20.0% |
| !!! | TTTGGAATTTTGAATTTGTT+AGG | - | chr1_2:75619498-75619517 | Msa0092820:three_prime_UTR | 20.0% |
| !!! | TTTGAATTTGTTAGGAAATT+TGG | - | chr1_2:75619506-75619525 | Msa0092820:three_prime_UTR | 20.0% |
| !!! | AGAAGAAAATTTGTTGTTAT+AGG | - | chr1_2:75619812-75619831 | Msa0092820:intron | 20.0% |
| !! | ATATTGAAACAGATAAAACT+GGG | + | chr1_2:75620226-75620245 | None:intergenic | 20.0% |
| !! | TATATTGAAACAGATAAAAC+TGG | + | chr1_2:75620227-75620246 | None:intergenic | 20.0% |
| !! | AAAATGTTATTGATATCGAA+TGG | - | chr1_2:75620317-75620336 | Msa0092820:intron | 20.0% |
| !!! | AACATACTCATCAAATTTTA+CGG | + | chr1_2:75620541-75620560 | None:intergenic | 20.0% |
| !! | TAGTAAACTAATTGCAATAA+TGG | - | chr1_2:75620711-75620730 | Msa0092820:intron | 20.0% |
| !! | AGTAAACTAATTGCAATAAT+GGG | - | chr1_2:75620712-75620731 | Msa0092820:intron | 20.0% |
| !! | TGCTAAAATAACTTATTAAG+AGG | + | chr1_2:75620922-75620941 | None:intergenic | 20.0% |
| !!! | ATAAGTTATTTTAGCATTGT+TGG | - | chr1_2:75620926-75620945 | Msa0092820:intron | 20.0% |
| !!! | CTTTTGTGTAATTCTTATTT+TGG | - | chr1_2:75621003-75621022 | Msa0092820:intron | 20.0% |
| !!! | TATAGAAATAGATTTGTTTC+AGG | + | chr1_2:75621430-75621449 | None:intergenic | 20.0% |
| !!! | AAAAACTGTATTGAGTTTTA+AGG | - | chr1_2:75621507-75621526 | Msa0092820:intron | 20.0% |
| !! | GAAAAAAGAAACAAGAATTA+GGG | + | chr1_2:75621740-75621759 | None:intergenic | 20.0% |
| !! | TGAAAAAAGAAACAAGAATT+AGG | + | chr1_2:75621741-75621760 | None:intergenic | 20.0% |
| !!! | AAATTTTTTACAAAAGAGTC+AGG | + | chr1_2:75621910-75621929 | None:intergenic | 20.0% |
| !!! | CTGTATTTATAATTTGCATT+AGG | - | chr1_2:75621978-75621997 | Msa0092820:intron | 20.0% |
| !!! | TAATTTGCATTAGGAATTTA+TGG | - | chr1_2:75621987-75622006 | Msa0092820:intron | 20.0% |
| !! | AATATGATGTTTATTGTGAA+CGG | + | chr1_2:75622448-75622467 | None:intergenic | 20.0% |
| !! | TTCACAATAAACATCATATT+GGG | - | chr1_2:75622448-75622467 | Msa0092820:intron | 20.0% |
| !!! | ATGTCTTTTGCTTATTTATT+TGG | - | chr1_2:75623065-75623084 | Msa0092820:intron | 20.0% |
| !!! | ATTCAAAGTTACGTTTTTAA+AGG | + | chr1_2:75623122-75623141 | None:intergenic | 20.0% |
| !! | TTAAAAACGTAACTTTGAAT+TGG | - | chr1_2:75623122-75623141 | Msa0092820:intron | 20.0% |
| !! | TAAAAACGTAACTTTGAATT+GGG | - | chr1_2:75623123-75623142 | Msa0092820:intron | 20.0% |
| !! | AATATCTTTAATTGTCAGTA+AGG | - | chr1_2:75623735-75623754 | Msa0092820:intron | 20.0% |
| !! | TGAAAGAAAGAAAGAAATAA+AGG | - | chr1_2:75624184-75624203 | Msa0092820:CDS | 20.0% |
| !! | TTAAAACCTTTAATCCATTT+CGG | + | chr1_2:75624442-75624461 | None:intergenic | 20.0% |
| !!! | TATTTTGTTAAATCAAAGGA+TGG | + | chr1_2:75624551-75624570 | None:intergenic | 20.0% |
| !! | GTTTGAGAAAAAATATTCAT+AGG | - | chr1_2:75624695-75624714 | Msa0092820:five_prime_UTR | 20.0% |
| ! | GAATTCAATGAATGTAAGAA+AGG | - | chr1_2:75618867-75618886 | Msa0092820:three_prime_UTR | 25.0% |
| ! | TTGAATGTAATTACATGTGT+CGG | - | chr1_2:75619226-75619245 | Msa0092820:three_prime_UTR | 25.0% |
| !!! | TTCTGAAATTAATCTGTGTT+TGG | - | chr1_2:75619480-75619499 | Msa0092820:three_prime_UTR | 25.0% |
| ! | GGAAAACTATCATTTGAATA+AGG | + | chr1_2:75619538-75619557 | None:intergenic | 25.0% |
| !!! | TTTGTTGTTATAGGATAGAT+TGG | - | chr1_2:75619821-75619840 | Msa0092820:intron | 25.0% |
| !! | TTGATTTTACATCATTCCAT+AGG | - | chr1_2:75619874-75619893 | Msa0092820:intron | 25.0% |
| !!! | GGTGTGTTTTTATTTAGTTA+CGG | - | chr1_2:75620567-75620586 | Msa0092820:intron | 25.0% |
| !!! | GTGTGTTTTTATTTAGTTAC+GGG | - | chr1_2:75620568-75620587 | Msa0092820:intron | 25.0% |
| ! | TAAAAATTAGATGACTCTTG+TGG | + | chr1_2:75620647-75620666 | None:intergenic | 25.0% |
| !! | GCAATTAGTTTACTAAAACA+TGG | + | chr1_2:75620706-75620725 | None:intergenic | 25.0% |
| !!! | ATTGTTTCTGAGCAAATTAA+TGG | + | chr1_2:75620837-75620856 | None:intergenic | 25.0% |
| !!! | GAGTAACAATTTTTTCCTAT+GGG | - | chr1_2:75620948-75620967 | Msa0092820:intron | 25.0% |
| ! | GTTGATACCATAAAAGAAAT+TGG | - | chr1_2:75620972-75620991 | Msa0092820:intron | 25.0% |
| !! | ATCTGAACCAATTTCTTTTA+TGG | + | chr1_2:75620982-75621001 | None:intergenic | 25.0% |
| !!! | TTTTTCTTGTTCTTTAGCTT+TGG | - | chr1_2:75621259-75621278 | Msa0092820:intron | 25.0% |
| !!! | TTTTCTTGTTCTTTAGCTTT+GGG | - | chr1_2:75621260-75621279 | Msa0092820:intron | 25.0% |
| ! | TATTCTTATGCGATTTCTTT+AGG | - | chr1_2:75621448-75621467 | Msa0092820:intron | 25.0% |
| ! | ACTAGAACATACTATCATAT+TGG | - | chr1_2:75621610-75621629 | Msa0092820:intron | 25.0% |
| ! | CTAGAACATACTATCATATT+GGG | - | chr1_2:75621611-75621630 | Msa0092820:intron | 25.0% |
| ! | GAGTAACGAAAAATTAAACA+AGG | + | chr1_2:75621771-75621790 | None:intergenic | 25.0% |
| ! | AGGTGACACTAAAATATATT+CGG | + | chr1_2:75622038-75622057 | None:intergenic | 25.0% |
| !! | TTGATTTGAGAATAATGTGT+TGG | - | chr1_2:75622142-75622161 | Msa0092820:intron | 25.0% |
| ! | TTTCAGTATATCTAACCTAA+TGG | - | chr1_2:75622343-75622362 | Msa0092820:intron | 25.0% |
| ! | TTCAGTATATCTAACCTAAT+GGG | - | chr1_2:75622344-75622363 | Msa0092820:intron | 25.0% |
| ! | ATATGATGTTTATTGTGAAC+GGG | + | chr1_2:75622447-75622466 | None:intergenic | 25.0% |
| ! | GTTCACAATAAACATCATAT+TGG | - | chr1_2:75622447-75622466 | Msa0092820:intron | 25.0% |
| ! | TTCAGTATATCTAACCTAAT+GGG | + | chr1_2:75622344-75622363 | None:intergenic | 25.0% |
| ! | TTTCAGTATATCTAACCTAA+TGG | + | chr1_2:75622343-75622362 | None:intergenic | 25.0% |
| ! | ATAGAGACTTGGAAAAATTA+GGG | + | chr1_2:75622645-75622664 | None:intergenic | 25.0% |
| ! | ATCTGTTAAATTCCAACAAT+TGG | - | chr1_2:75622753-75622772 | Msa0092820:intron | 25.0% |
| ! | AAATTCCAACAATTGGTATT+AGG | - | chr1_2:75622760-75622779 | Msa0092820:intron | 25.0% |
| ! | AATTCCAACAATTGGTATTA+GGG | - | chr1_2:75622761-75622780 | Msa0092820:intron | 25.0% |
| ! | ATTGTAGATCATCATTATGT+TGG | + | chr1_2:75622917-75622936 | None:intergenic | 25.0% |
| ! | AGCAAAACACATATTAGAAA+TGG | + | chr1_2:75622940-75622959 | None:intergenic | 25.0% |
| !! | TCTTTTGCTTATTTATTTGG+TGG | - | chr1_2:75623068-75623087 | Msa0092820:intron | 25.0% |
| !!! | CGTTTTTAAAGGTCATTATA+TGG | + | chr1_2:75623111-75623130 | None:intergenic | 25.0% |
| ! | AAAAACGTAACTTTGAATTG+GGG | - | chr1_2:75623124-75623143 | Msa0092820:intron | 25.0% |
| ! | TATAAATACACCAATCTGAA+AGG | + | chr1_2:75623279-75623298 | None:intergenic | 25.0% |
| !!! | TTCTATTCTATTTTTTCCCT+TGG | + | chr1_2:75623347-75623366 | None:intergenic | 25.0% |
| ! | CTATTCAACTTAAAATACCA+TGG | + | chr1_2:75623388-75623407 | None:intergenic | 25.0% |
| !!! | GTATTTTAAGTTGAATAGCT+GGG | - | chr1_2:75623390-75623409 | Msa0092820:intron | 25.0% |
| ! | TTGCAATTCACAATATACTA+TGG | + | chr1_2:75623476-75623495 | None:intergenic | 25.0% |
| ! | AACATAAAGGATATACTTAC+AGG | + | chr1_2:75623628-75623647 | None:intergenic | 25.0% |
| ! | CAAAAGAAAGCTAAACATAA+AGG | + | chr1_2:75623641-75623660 | None:intergenic | 25.0% |
| !!! | CTTTATGTTTAGCTTTCTTT+TGG | - | chr1_2:75623639-75623658 | Msa0092820:intron | 25.0% |
| !!! | TTTGTTGTTAATTGTGATCA+TGG | - | chr1_2:75624233-75624252 | Msa0092820:CDS | 25.0% |
| ! | TTACTAGCATTTCTCAAATA+GGG | - | chr1_2:75624256-75624275 | Msa0092820:intron | 25.0% |
| !!! | AAGTTCATTTATTTTCTCAC+GGG | + | chr1_2:75624298-75624317 | None:intergenic | 25.0% |
| !!! | CAAGTTCATTTATTTTCTCA+CGG | + | chr1_2:75624299-75624318 | None:intergenic | 25.0% |
| !!! | GTTTTAAACTTACAATTTGC+AGG | - | chr1_2:75624455-75624474 | Msa0092820:CDS | 25.0% |
| ! | ATGATGAATTTATTCACAAC+TGG | + | chr1_2:75624506-75624525 | None:intergenic | 25.0% |
| TGAATGTAATTACATGTGTC+GGG | - | chr1_2:75619227-75619246 | Msa0092820:three_prime_UTR | 30.0% | |
| CTTTCATTTCAGTTCAAGAT+TGG | - | chr1_2:75619311-75619330 | Msa0092820:three_prime_UTR | 30.0% | |
| TTGTTGAAAATTACCATCGT+TGG | - | chr1_2:75619631-75619650 | Msa0092820:intron | 30.0% | |
| !! | TATAACACTTGTTGTGTCTT+TGG | - | chr1_2:75619688-75619707 | Msa0092820:intron | 30.0% |
| TATGTTTGGATTCTTGGTAT+AGG | + | chr1_2:75619908-75619927 | None:intergenic | 30.0% | |
| !! | ATAGTCATTTTGATCCCTTA+GGG | + | chr1_2:75619931-75619950 | None:intergenic | 30.0% |
| !! | AATAGTCATTTTGATCCCTT+AGG | + | chr1_2:75619932-75619951 | None:intergenic | 30.0% |
| GTAATACCTGAATCAGTATT+AGG | - | chr1_2:75620019-75620038 | Msa0092820:CDS | 30.0% | |
| !! | AAAATGCCTAATACTGATTC+AGG | + | chr1_2:75620028-75620047 | None:intergenic | 30.0% |
| TTATGTAATTTCTGATGTGC+TGG | - | chr1_2:75620056-75620075 | Msa0092820:intron | 30.0% | |
| AAGAGTCAATGATTCAATGA+AGG | + | chr1_2:75620130-75620149 | None:intergenic | 30.0% | |
| TGGGAAACAAATGTCTAAAT+TGG | + | chr1_2:75620207-75620226 | None:intergenic | 30.0% | |
| AATGAAAGTTGTTATCCGTA+TGG | - | chr1_2:75620365-75620384 | Msa0092820:intron | 30.0% | |
| AATCGAATTGTACAACCATA+CGG | + | chr1_2:75620383-75620402 | None:intergenic | 30.0% | |
| GTCATATTGAACTTAATTGC+CGG | - | chr1_2:75620445-75620464 | Msa0092820:intron | 30.0% | |
| TCATATTGAACTTAATTGCC+GGG | - | chr1_2:75620446-75620465 | Msa0092820:intron | 30.0% | |
| TCAATCACTATTTGCACATA+AGG | + | chr1_2:75620480-75620499 | None:intergenic | 30.0% | |
| !! | GTTTTTATTTAGTTACGGGA+AGG | - | chr1_2:75620572-75620591 | Msa0092820:intron | 30.0% |
| ACTAAAACATGGAAAATCGA+TGG | + | chr1_2:75620695-75620714 | None:intergenic | 30.0% | |
| CAAAATCATTCCCAATCAAA+TGG | + | chr1_2:75620875-75620894 | None:intergenic | 30.0% | |
| !!! | GGAGTAACAATTTTTTCCTA+TGG | - | chr1_2:75620947-75620966 | Msa0092820:intron | 30.0% |
| ! | AGAACAATGCAGTTTAAGTT+TGG | + | chr1_2:75621234-75621253 | None:intergenic | 30.0% |
| !! | TTTCTTGTTCTTTAGCTTTG+GGG | - | chr1_2:75621261-75621280 | Msa0092820:intron | 30.0% |
| ! | GACTTACAATATTCAGCTTT+TGG | - | chr1_2:75621284-75621303 | Msa0092820:intron | 30.0% |
| ATCACAAGAAAATAGCATTC+TGG | + | chr1_2:75621477-75621496 | None:intergenic | 30.0% | |
| !!! | GAATGCTATTTTCTTGTGAT+AGG | - | chr1_2:75621477-75621496 | Msa0092820:intron | 30.0% |
| !!! | ATTGAGTTTTAAGGTTCTCA+TGG | - | chr1_2:75621516-75621535 | Msa0092820:intron | 30.0% |
| !!! | TTGAGTTTTAAGGTTCTCAT+GGG | - | chr1_2:75621517-75621536 | Msa0092820:intron | 30.0% |
| ! | ATAGTATGTTCTAGTTGTTG+CGG | + | chr1_2:75621605-75621624 | None:intergenic | 30.0% |
| !!! | GAATTTTGGAGTTAACCAAT+TGG | + | chr1_2:75621643-75621662 | None:intergenic | 30.0% |
| TAGCAACGAAAAAGTGAATT+AGG | + | chr1_2:75621696-75621715 | None:intergenic | 30.0% | |
| AAAGAAACAAGAATTAGGGA+GGG | + | chr1_2:75621736-75621755 | None:intergenic | 30.0% | |
| AAAAGAAACAAGAATTAGGG+AGG | + | chr1_2:75621737-75621756 | None:intergenic | 30.0% | |
| ! | AGGTTTATAGTGGTTATTTC+TGG | + | chr1_2:75621890-75621909 | None:intergenic | 30.0% |
| ATGGATGTAACTACTAACTA+GGG | + | chr1_2:75621933-75621952 | None:intergenic | 30.0% | |
| ATGGGATAAAACAAAGAGAA+AGG | + | chr1_2:75622058-75622077 | None:intergenic | 30.0% | |
| ! | AATGTGTTGGAATTTTACAG+AGG | - | chr1_2:75622155-75622174 | Msa0092820:intron | 30.0% |
| AGTAACAGCTCATCAATAAA+AGG | + | chr1_2:75622315-75622334 | None:intergenic | 30.0% | |
| CATATATAAGTCATCCCATT+AGG | + | chr1_2:75622361-75622380 | None:intergenic | 30.0% | |
| !! | AATGGGCTAACTAAAAAGAA+CGG | - | chr1_2:75622406-75622425 | Msa0092820:intron | 30.0% |
| ATGAACAACTTAACACATCA+CGG | + | chr1_2:75622490-75622509 | None:intergenic | 30.0% | |
| TAGAGACTTGGAAAAATTAG+GGG | + | chr1_2:75622644-75622663 | None:intergenic | 30.0% | |
| CATAGAGACTTGGAAAAATT+AGG | + | chr1_2:75622646-75622665 | None:intergenic | 30.0% | |
| ! | CTAATTTTTCCAAGTCTCTA+TGG | - | chr1_2:75622644-75622663 | Msa0092820:intron | 30.0% |
| TACCAAACCAAAAATTCCTA+AGG | - | chr1_2:75623186-75623205 | Msa0092820:intron | 30.0% | |
| !! | CATAAGTTCTAGAAAGCAAA+TGG | - | chr1_2:75623227-75623246 | Msa0092820:intron | 30.0% |
| TAAAACCTCTCCAACATATA+CGG | + | chr1_2:75623308-75623327 | None:intergenic | 30.0% | |
| TTGAGAAATAGAATTTGCCA+TGG | - | chr1_2:75623368-75623387 | Msa0092820:intron | 30.0% | |
| !!! | GGTATTTTAAGTTGAATAGC+TGG | - | chr1_2:75623389-75623408 | Msa0092820:intron | 30.0% |
| TTGATTGTGTGATTAAAGCT+GGG | - | chr1_2:75623423-75623442 | Msa0092820:CDS | 30.0% | |
| GCATAGTCAGCATATTTAAA+TGG | + | chr1_2:75623670-75623689 | None:intergenic | 30.0% | |
| TAAGGCACAAAAACTTATTG+TGG | - | chr1_2:75623753-75623772 | Msa0092820:intron | 30.0% | |
| ! | GTAATCGATTTCAGCTATAA+TGG | + | chr1_2:75623837-75623856 | None:intergenic | 30.0% |
| TGCAAGATATTGTAGTTTGA+AGG | + | chr1_2:75623889-75623908 | None:intergenic | 30.0% | |
| !! | TCTTGCACATGTTTAACTTT+TGG | - | chr1_2:75623902-75623921 | Msa0092820:CDS | 30.0% |
| ! | ATGCCATCTTTTATGGTAAT+TGG | - | chr1_2:75624122-75624141 | Msa0092820:intron | 30.0% |
| CATCCAATTACCATAAAAGA+TGG | + | chr1_2:75624128-75624147 | None:intergenic | 30.0% | |
| !! | ATGCTGTATTATTGATGATG+TGG | - | chr1_2:75624145-75624164 | Msa0092820:intron | 30.0% |
| TTTCTTTCAGTTCAAGGTTT+GGG | + | chr1_2:75624173-75624192 | None:intergenic | 30.0% | |
| TCTTTCTTTCTTTCAGTTCA+AGG | + | chr1_2:75624179-75624198 | None:intergenic | 30.0% | |
| GTTACTAGCATTTCTCAAAT+AGG | - | chr1_2:75624255-75624274 | Msa0092820:intron | 30.0% | |
| AATGAACTTGACATAAGTAC+AGG | - | chr1_2:75624309-75624328 | Msa0092820:intron | 30.0% | |
| TTAAACTTACAATTTGCAGG+TGG | - | chr1_2:75624458-75624477 | Msa0092820:CDS | 30.0% | |
| AGTTGAATGGAGGATAAAAA+TGG | - | chr1_2:75624603-75624622 | Msa0092820:CDS | 30.0% | |
| GTTGAATGGAGGATAAAAAT+GGG | - | chr1_2:75624604-75624623 | Msa0092820:CDS | 30.0% | |
| GAATCAGGTAGATAATGATT+AGG | + | chr1_2:75624653-75624672 | None:intergenic | 30.0% | |
| ! | CTGATTCCTATGAATTTTCT+CGG | - | chr1_2:75624666-75624685 | Msa0092820:five_prime_UTR | 30.0% |
| ! | TCTTTTCCGAGAAAATTCAT+AGG | + | chr1_2:75624675-75624694 | None:intergenic | 30.0% |
| !! | GTTTTGTTGGAGAAAAGAGA+GGG | + | chr1_2:75619028-75619047 | None:intergenic | 35.0% |
| !!! | AGTTTTGTTGGAGAAAAGAG+AGG | + | chr1_2:75619029-75619048 | None:intergenic | 35.0% |
| ACGTGCTAATTCTGAATTGA+TGG | + | chr1_2:75619110-75619129 | None:intergenic | 35.0% | |
| AAAAGAATGAGAACTTGCCT+TGG | + | chr1_2:75619170-75619189 | None:intergenic | 35.0% | |
| CAATTATGTCAGTATCAGTG+TGG | + | chr1_2:75619209-75619228 | None:intergenic | 35.0% | |
| GAGAGTAAGTGTAGCATTAA+AGG | + | chr1_2:75619264-75619283 | None:intergenic | 35.0% | |
| !! | TGCGATGTTTTTGTCCTTAT+CGG | + | chr1_2:75619360-75619379 | None:intergenic | 35.0% |
| ! | TAGTTTTCCTGTTTATGCTG+AGG | - | chr1_2:75619549-75619568 | Msa0092820:CDS | 35.0% |
| TCAATATCCTCAGCATAAAC+AGG | + | chr1_2:75619559-75619578 | None:intergenic | 35.0% | |
| TTGAAAATTACCATCGTTGG+TGG | - | chr1_2:75619634-75619653 | Msa0092820:intron | 35.0% | |
| TGTTATAGGATAGATTGGAG+TGG | - | chr1_2:75619826-75619845 | Msa0092820:intron | 35.0% | |
| TTAGGGTATGTTTGGATTCT+TGG | + | chr1_2:75619914-75619933 | None:intergenic | 35.0% | |
| AAGAATCCAAACATACCCTA+AGG | - | chr1_2:75619913-75619932 | Msa0092820:intron | 35.0% | |
| AGAATCCAAACATACCCTAA+GGG | - | chr1_2:75619914-75619933 | Msa0092820:intron | 35.0% | |
| TCACAATCCAAATTCTCTTC+AGG | + | chr1_2:75619999-75620018 | None:intergenic | 35.0% | |
| ! | CTTTTTGATATTGACATCCC+CGG | - | chr1_2:75620096-75620115 | Msa0092820:intron | 35.0% |
| ! | TTTTTGATATTGACATCCCC+GGG | - | chr1_2:75620097-75620116 | Msa0092820:intron | 35.0% |
| TTCAATGAAGGTAATCTTCC+CGG | + | chr1_2:75620118-75620137 | None:intergenic | 35.0% | |
| !! | AATCATTGACTCTTACTGCT+GGG | - | chr1_2:75620136-75620155 | Msa0092820:intron | 35.0% |
| ATGATTGATTACAAACGCAG+TGG | + | chr1_2:75620269-75620288 | None:intergenic | 35.0% | |
| AGGATGACTTTGTTGAAACT+AGG | - | chr1_2:75620510-75620529 | Msa0092820:intron | 35.0% | |
| TTTGATGAGTATGTTCACTC+AGG | - | chr1_2:75620546-75620565 | Msa0092820:intron | 35.0% | |
| TAATGGGATGATTCATACAG+AGG | - | chr1_2:75620728-75620747 | Msa0092820:intron | 35.0% | |
| TAGGCATATGCTATGACATT+AGG | - | chr1_2:75620766-75620785 | Msa0092820:intron | 35.0% | |
| AATCATTCCCAATCAAATGG+AGG | + | chr1_2:75620872-75620891 | None:intergenic | 35.0% | |
| ! | AGAGGCATGAATGAAAACAT+TGG | + | chr1_2:75620904-75620923 | None:intergenic | 35.0% |
| TTTATGGTATCAACTCCCAT+AGG | + | chr1_2:75620966-75620985 | None:intergenic | 35.0% | |
| CAACTGGAGAATTAATCTCA+AGG | + | chr1_2:75621198-75621217 | None:intergenic | 35.0% | |
| TGGAAACAAATCAACTCAAC+TGG | + | chr1_2:75621214-75621233 | None:intergenic | 35.0% | |
| !! | TTCTTGTTCTTTAGCTTTGG+GGG | - | chr1_2:75621262-75621281 | Msa0092820:intron | 35.0% |
| !!! | AATATTCAGCTTTTGGCTTC+AGG | - | chr1_2:75621291-75621310 | Msa0092820:intron | 35.0% |
| TGCAATAACTCCCAATGTAA+TGG | + | chr1_2:75621363-75621382 | None:intergenic | 35.0% | |
| !!! | TGAGTTTTAAGGTTCTCATG+GGG | - | chr1_2:75621518-75621537 | Msa0092820:intron | 35.0% |
| CAACGAAAAAGTGAATTAGG+AGG | + | chr1_2:75621693-75621712 | None:intergenic | 35.0% | |
| CAAAAGAGTCAGGTTTATAG+TGG | + | chr1_2:75621900-75621919 | None:intergenic | 35.0% | |
| GATGGATGTAACTACTAACT+AGG | + | chr1_2:75621934-75621953 | None:intergenic | 35.0% | |
| GAACTGTCAGTCTAATTTGA+TGG | + | chr1_2:75621952-75621971 | None:intergenic | 35.0% | |
| !! | TGTTTCTAGCACTGAAGATA+AGG | + | chr1_2:75622099-75622118 | None:intergenic | 35.0% |
| CTTATATATGCCCATTAGTG+AGG | - | chr1_2:75622371-75622390 | Msa0092820:intron | 35.0% | |
| !!! | TTTTTAGTTAGCCCATTGAG+AGG | + | chr1_2:75622403-75622422 | None:intergenic | 35.0% |
| ATATTGGGCGTTATTGTGAA+CGG | - | chr1_2:75622463-75622482 | Msa0092820:intron | 35.0% | |
| !!! | ATTTTAGTTAGCCCATTGAG+AGG | - | chr1_2:75622508-75622527 | Msa0092820:intron | 35.0% |
| TATAATCTAGCCATCCCATT+AGG | - | chr1_2:75622553-75622572 | Msa0092820:intron | 35.0% | |
| GTATATCTAACCTAATGGGA+TGG | + | chr1_2:75622348-75622367 | None:intergenic | 35.0% | |
| AACCATACAACAGATCTAGT+TGG | + | chr1_2:75622787-75622806 | None:intergenic | 35.0% | |
| TGAATGCAGTAATAATCCAC+AGG | + | chr1_2:75623017-75623036 | None:intergenic | 35.0% | |
| !!! | CTCCTTAGGAATTTTTGGTT+TGG | + | chr1_2:75623191-75623210 | None:intergenic | 35.0% |
| ! | CTGAACTCCTTAGGAATTTT+TGG | + | chr1_2:75623196-75623215 | None:intergenic | 35.0% |
| ATATTCATGCTGAACTCCTT+AGG | + | chr1_2:75623205-75623224 | None:intergenic | 35.0% | |
| TATAGATGAGCCGTATATGT+TGG | - | chr1_2:75623295-75623314 | Msa0092820:intron | 35.0% | |
| !! | TTAAGTTGAATAGCTGGGAT+TGG | - | chr1_2:75623395-75623414 | Msa0092820:intron | 35.0% |
| GTTGATTGTGTGATTAAAGC+TGG | - | chr1_2:75623422-75623441 | Msa0092820:CDS | 35.0% | |
| !! | ATTAAAGCTGGGTTTTAGTG+AGG | - | chr1_2:75623434-75623453 | Msa0092820:CDS | 35.0% |
| !!! | GTTTTATGCTCTGAGATAAG+TGG | - | chr1_2:75623497-75623516 | Msa0092820:intron | 35.0% |
| TCATTTCCGACAGTTATATG+TGG | - | chr1_2:75623534-75623553 | Msa0092820:intron | 35.0% | |
| ! | AATATGCTGACTATGCAAGT+TGG | - | chr1_2:75623674-75623693 | Msa0092820:intron | 35.0% |
| TATTGTGGACCATATCAATG+TGG | - | chr1_2:75623768-75623787 | Msa0092820:intron | 35.0% | |
| ATCAATTGGTAGATTTGCAG+AGG | - | chr1_2:75624020-75624039 | Msa0092820:CDS | 35.0% | |
| CTTTCTTTCAGTTCAAGGTT+TGG | + | chr1_2:75624174-75624193 | None:intergenic | 35.0% | |
| AGCATTTCTCAAATAGGGAT+TGG | - | chr1_2:75624261-75624280 | Msa0092820:intron | 35.0% | |
| ACAACATATGTCAGATTCAC+AGG | - | chr1_2:75624416-75624435 | Msa0092820:intron | 35.0% | |
| AATGGAGGATAAAAATGGGT+CGG | - | chr1_2:75624608-75624627 | Msa0092820:CDS | 35.0% | |
| ! | TAGGTCATGTTTTACACACA+AGG | + | chr1_2:75624634-75624653 | None:intergenic | 35.0% |
| CGAGAAAATTCATAGGAATC+AGG | + | chr1_2:75624668-75624687 | None:intergenic | 35.0% | |
| !!! | TGAAGATTCGTTTTCGAGTG+TGG | + | chr1_2:75619000-75619019 | None:intergenic | 40.0% |
| !! | GCGAAAGAAGAGAGTTTTGT+TGG | + | chr1_2:75619041-75619060 | None:intergenic | 40.0% |
| ! | TGTAGCATTAAAGGTGTGTC+TGG | + | chr1_2:75619255-75619274 | None:intergenic | 40.0% |
| !! | GATGTTTTTGTCCTTATCGG+AGG | + | chr1_2:75619357-75619376 | None:intergenic | 40.0% |
| TATGCTGAGGATATTGATGC+TGG | - | chr1_2:75619562-75619581 | Msa0092820:CDS | 40.0% | |
| ! | AAGTTCAGAAAGCATAGCAG+TGG | + | chr1_2:75619605-75619624 | None:intergenic | 40.0% |
| !!! | TTTGGCTTTGAGTTTTCCGT+CGG | + | chr1_2:75619716-75619735 | None:intergenic | 40.0% |
| AAACACTACCTTACGGTGTT+TGG | + | chr1_2:75619734-75619753 | None:intergenic | 40.0% | |
| TTCCCACAAACACTACCTTA+CGG | + | chr1_2:75619741-75619760 | None:intergenic | 40.0% | |
| TTGATCCCTTAGGGTATGTT+TGG | + | chr1_2:75619922-75619941 | None:intergenic | 40.0% | |
| ATCCAAATTCTCTTCAGGTG+TGG | + | chr1_2:75619994-75620013 | None:intergenic | 40.0% | |
| TCAATGAAGGTAATCTTCCC+GGG | + | chr1_2:75620117-75620136 | None:intergenic | 40.0% | |
| !! | GAATCATTGACTCTTACTGC+TGG | - | chr1_2:75620135-75620154 | Msa0092820:intron | 40.0% |
| !! | ATCATTGACTCTTACTGCTG+GGG | - | chr1_2:75620137-75620156 | Msa0092820:intron | 40.0% |
| ACTCCAACAATTGTTGACAC+AGG | - | chr1_2:75620162-75620181 | Msa0092820:intron | 40.0% | |
| AGACCTGTGTCAACAATTGT+TGG | + | chr1_2:75620168-75620187 | None:intergenic | 40.0% | |
| CAAACGCAGTGGTAGAATAA+AGG | + | chr1_2:75620258-75620277 | None:intergenic | 40.0% | |
| ! | AGCAAGAGTGTAAGAAGCTA+GGG | + | chr1_2:75620422-75620441 | None:intergenic | 40.0% |
| ! | AAGCAAGAGTGTAAGAAGCT+AGG | + | chr1_2:75620423-75620442 | None:intergenic | 40.0% |
| AGCTTCTTACACTCTTGCTT+AGG | - | chr1_2:75620423-75620442 | Msa0092820:intron | 40.0% | |
| TAGTGATTGACTGTCTCTGA+AGG | - | chr1_2:75620490-75620509 | Msa0092820:intron | 40.0% | |
| GCGTATATCATTGCTAGTTC+TGG | + | chr1_2:75620795-75620814 | None:intergenic | 40.0% | |
| TTGTTCCACCTCCATTTGAT+TGG | - | chr1_2:75620861-75620880 | Msa0092820:intron | 40.0% | |
| TGTTCCACCTCCATTTGATT+GGG | - | chr1_2:75620862-75620881 | Msa0092820:intron | 40.0% | |
| TGACAACTGGTCCATTACAT+TGG | - | chr1_2:75621349-75621368 | Msa0092820:intron | 40.0% | |
| GACAACTGGTCCATTACATT+GGG | - | chr1_2:75621350-75621369 | Msa0092820:intron | 40.0% | |
| TACATTGGGAGTTATTGCAG+AGG | - | chr1_2:75621364-75621383 | Msa0092820:intron | 40.0% | |
| ACATTGGGAGTTATTGCAGA+GGG | - | chr1_2:75621365-75621384 | Msa0092820:intron | 40.0% | |
| GAAGAACTTTGCTTACGTAC+AGG | + | chr1_2:75621552-75621571 | None:intergenic | 40.0% | |
| ! | TGGAGTTAACCAATTGGCTT+AGG | + | chr1_2:75621637-75621656 | None:intergenic | 40.0% |
| TATGTGCAAAGAGGAAGTGA+TGG | + | chr1_2:75621813-75621832 | None:intergenic | 40.0% | |
| AAACGCTGTTATGTGCAAAG+AGG | + | chr1_2:75621822-75621841 | None:intergenic | 40.0% | |
| ! | TTCTAGCACTGAAGATAAGG+AGG | + | chr1_2:75622096-75622115 | None:intergenic | 40.0% |
| AATGTTGTAACCGTGTACCT+TGG | - | chr1_2:75622227-75622246 | Msa0092820:CDS | 40.0% | |
| ATGGAGACTTGGGAGAATTA+GGG | - | chr1_2:75622272-75622291 | Msa0092820:intron | 40.0% | |
| TGGCTAGATTATATGACCAC+CGG | + | chr1_2:75622546-75622565 | None:intergenic | 40.0% | |
| AACTGCTCATCATCACTAAG+AGG | - | chr1_2:75622602-75622621 | Msa0092820:intron | 40.0% | |
| CTGAAGAATCCATAGAGACT+TGG | + | chr1_2:75622656-75622675 | None:intergenic | 40.0% | |
| CTTCAGTCATCCAAGATACA+CGG | - | chr1_2:75622670-75622689 | Msa0092820:intron | 40.0% | |
| TTGGCCCTAATACCAATTGT+TGG | + | chr1_2:75622768-75622787 | None:intergenic | 40.0% | |
| ! | TGTTTTGCTTCTTCACTTGC+AGG | - | chr1_2:75622951-75622970 | Msa0092820:intron | 40.0% |
| ! | GTTTTGCTTCTTCACTTGCA+GGG | - | chr1_2:75622952-75622971 | Msa0092820:intron | 40.0% |
| ACAGGAGTTGCACAAATTAG+GGG | + | chr1_2:75622999-75623018 | None:intergenic | 40.0% | |
| CACAGGAGTTGCACAAATTA+GGG | + | chr1_2:75623000-75623019 | None:intergenic | 40.0% | |
| TGTGATTGTGCCTTTCAGAT+TGG | - | chr1_2:75623266-75623285 | Msa0092820:intron | 40.0% | |
| ! | TTTTTCCCTTGGAGATGTGA+AGG | + | chr1_2:75623336-75623355 | None:intergenic | 40.0% |
| CTGAGATAAGTGGATGCTTA+TGG | - | chr1_2:75623507-75623526 | Msa0092820:intron | 40.0% | |
| AGGTTGCCACATATAACTGT+CGG | + | chr1_2:75623543-75623562 | None:intergenic | 40.0% | |
| ACCATATCAATGTGGCAGTT+TGG | - | chr1_2:75623776-75623795 | Msa0092820:intron | 40.0% | |
| TCCAAACTGCCACATTGATA+TGG | + | chr1_2:75623780-75623799 | None:intergenic | 40.0% | |
| TTTGGCTACTACAGAACATG+AGG | - | chr1_2:75623805-75623824 | Msa0092820:intron | 40.0% | |
| GCGAGGTGATCTTTATCAAT+TGG | - | chr1_2:75624006-75624025 | Msa0092820:CDS | 40.0% | |
| TGAATTCCAACTGAATGGAG+CGG | - | chr1_2:75624044-75624063 | Msa0092820:CDS | 40.0% | |
| ! | CATGCACATGCCATCTTTTA+TGG | - | chr1_2:75624115-75624134 | Msa0092820:intron | 40.0% |
| ACTTGACATAAGTACAGGAG+TGG | - | chr1_2:75624314-75624333 | Msa0092820:intron | 40.0% | |
| GTGAATTATGTCGTCTTCAC+AGG | - | chr1_2:75624365-75624384 | Msa0092820:intron | 40.0% | |
| AGGATCAGGCTATGAAGAAT+TGG | - | chr1_2:75624385-75624404 | Msa0092820:intron | 40.0% | |
| AGTAGACTCATGCAGTTGAA+TGG | - | chr1_2:75624590-75624609 | Msa0092820:CDS | 40.0% | |
| AAGCAGCCATGATTGGAGAA+GGG | + | chr1_2:75619078-75619097 | None:intergenic | 45.0% | |
| GATGATGAAGCAGCCATGAT+TGG | + | chr1_2:75619085-75619104 | None:intergenic | 45.0% | |
| TATTCAAGACGCTGCTGCAA+AGG | - | chr1_2:75619394-75619413 | Msa0092820:three_prime_UTR | 45.0% | |
| ATTCAAGACGCTGCTGCAAA+GGG | - | chr1_2:75619395-75619414 | Msa0092820:three_prime_UTR | 45.0% | |
| ! | TCAGAAAGCATAGCAGTGGA+AGG | + | chr1_2:75619601-75619620 | None:intergenic | 45.0% |
| AGGAATAGAACCACCAACGA+TGG | + | chr1_2:75619647-75619666 | None:intergenic | 45.0% | |
| GGTTCTATTCCTGAACGTTC+TGG | - | chr1_2:75619655-75619674 | Msa0092820:intron | 45.0% | |
| AATCGATCTCCAGAACGTTC+AGG | + | chr1_2:75619667-75619686 | None:intergenic | 45.0% | |
| ACTCAAAGCCAAACACCGTA+AGG | - | chr1_2:75619723-75619742 | Msa0092820:CDS | 45.0% | |
| ACACCGTAAGGTAGTGTTTG+TGG | - | chr1_2:75619735-75619754 | Msa0092820:CDS | 45.0% | |
| CACCGTAAGGTAGTGTTTGT+GGG | - | chr1_2:75619736-75619755 | Msa0092820:CDS | 45.0% | |
| GTTTGTGGGAATCTTGTCTC+AGG | - | chr1_2:75619750-75619769 | Msa0092820:CDS | 45.0% | |
| GGTATAGGAGTGACATCCTA+TGG | + | chr1_2:75619893-75619912 | None:intergenic | 45.0% | |
| CACCACACCTGAAGAGAATT+TGG | - | chr1_2:75619989-75620008 | Msa0092820:CDS | 45.0% | |
| CAATGAAGGTAATCTTCCCG+GGG | + | chr1_2:75620116-75620135 | None:intergenic | 45.0% | |
| GCACATAAGGTAAGATCACC+CGG | + | chr1_2:75620467-75620486 | None:intergenic | 45.0% | |
| GGGATGATTCATACAGAGGT+TGG | - | chr1_2:75620732-75620751 | Msa0092820:intron | 45.0% | |
| GCAATGATATACGCAGCAAG+AGG | - | chr1_2:75620801-75620820 | Msa0092820:intron | 45.0% | |
| CATTCCCAATCAAATGGAGG+TGG | + | chr1_2:75620869-75620888 | None:intergenic | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr1_2:75621049-75621068 | Msa0092820:intron | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr1_2:75621050-75621069 | Msa0092820:intron | 45.0% |
| GTTGTCATGTTAAAAGCCCC+AGG | + | chr1_2:75621336-75621355 | None:intergenic | 45.0% | |
| ! | GGGGCTTTTAACATGACAAC+TGG | - | chr1_2:75621336-75621355 | Msa0092820:intron | 45.0% |
| CATATTGGGCCTAAGCCAAT+TGG | - | chr1_2:75621625-75621644 | Msa0092820:intron | 45.0% | |
| ! | GAGGGAGGCTAACAGAATTT+TGG | + | chr1_2:75621657-75621676 | None:intergenic | 45.0% |
| GTGAATTAGGAGGTGATGAC+TGG | + | chr1_2:75621683-75621702 | None:intergenic | 45.0% | |
| ! | TATCCCTTCCCTTTTCTGTG+TGG | - | chr1_2:75621841-75621860 | Msa0092820:intron | 45.0% |
| CAAGCATCTGGCATACTGAT+GGG | + | chr1_2:75621867-75621886 | None:intergenic | 45.0% | |
| !! | GGTTATTTCTGGCAAGCATC+TGG | + | chr1_2:75621879-75621898 | None:intergenic | 45.0% |
| TGAAGATAAGGAGGAGTCAG+GGG | + | chr1_2:75622087-75622106 | None:intergenic | 45.0% | |
| CTGAAGATAAGGAGGAGTCA+GGG | + | chr1_2:75622088-75622107 | None:intergenic | 45.0% | |
| ACTGAAGATAAGGAGGAGTC+AGG | + | chr1_2:75622089-75622108 | None:intergenic | 45.0% | |
| ATGGATTCTGCAGTCATCCA+AGG | + | chr1_2:75622247-75622266 | None:intergenic | 45.0% | |
| ACTGCAGAATCCATACTCCA+TGG | - | chr1_2:75622253-75622272 | Msa0092820:CDS | 45.0% | |
| ATCCATACTCCATGGAGACT+TGG | - | chr1_2:75622261-75622280 | Msa0092820:intron | 45.0% | |
| TCCATACTCCATGGAGACTT+GGG | - | chr1_2:75622262-75622281 | Msa0092820:intron | 45.0% | |
| CTAATTCTCCCAAGTCTCCA+TGG | + | chr1_2:75622273-75622292 | None:intergenic | 45.0% | |
| CATGGAGACTTGGGAGAATT+AGG | - | chr1_2:75622271-75622290 | Msa0092820:intron | 45.0% | |
| TATATGCCCATTAGTGAGGC+AGG | - | chr1_2:75622375-75622394 | Msa0092820:intron | 45.0% | |
| ATATGCCCATTAGTGAGGCA+GGG | - | chr1_2:75622376-75622395 | Msa0092820:intron | 45.0% | |
| TATTGTGAACGGGTCGTGAT+TGG | + | chr1_2:75622437-75622456 | None:intergenic | 45.0% | |
| CTAGATTATATGACCACCGG+TGG | + | chr1_2:75622543-75622562 | None:intergenic | 45.0% | |
| AATGCGATGACCGTGTATCT+TGG | + | chr1_2:75622683-75622702 | None:intergenic | 45.0% | |
| GGCCAACTAGATCTGTTGTA+TGG | - | chr1_2:75622782-75622801 | Msa0092820:CDS | 45.0% | |
| TTGCAGGGCTACAGATAATC+AGG | - | chr1_2:75622967-75622986 | Msa0092820:intron | 45.0% | |
| CCACAGGAGTTGCACAAATT+AGG | + | chr1_2:75623001-75623020 | None:intergenic | 45.0% | |
| ! | CCTAATTTGTGCAACTCCTG+TGG | - | chr1_2:75622998-75623017 | Msa0092820:intron | 45.0% |
| ATGAGCCGTATATGTTGGAG+AGG | - | chr1_2:75623300-75623319 | Msa0092820:intron | 45.0% | |
| ATCACTCCTTCACATCTCCA+AGG | - | chr1_2:75623327-75623346 | Msa0092820:intron | 45.0% | |
| TCACTCCTTCACATCTCCAA+GGG | - | chr1_2:75623328-75623347 | Msa0092820:intron | 45.0% | |
| ! | TTGAATAGCTGGGATTGGTG+CGG | - | chr1_2:75623400-75623419 | Msa0092820:intron | 45.0% |
| GGATACTACTGGTGGTTATG+TGG | - | chr1_2:75623576-75623595 | Msa0092820:intron | 45.0% | |
| TACTGGTGGTTATGTGGCTT+GGG | - | chr1_2:75623582-75623601 | Msa0092820:intron | 45.0% | |
| ACTTACAGGACCAACAAGAG+TGG | + | chr1_2:75623614-75623633 | None:intergenic | 45.0% | |
| ! | GTGGCAGTTTGGAGAAGTTT+TGG | - | chr1_2:75623787-75623806 | Msa0092820:intron | 45.0% |
| GAGGCTGAATTCCAACTGAA+TGG | - | chr1_2:75624039-75624058 | Msa0092820:CDS | 45.0% | |
| GAATTCCAACTGAATGGAGC+GGG | - | chr1_2:75624045-75624064 | Msa0092820:CDS | 45.0% | |
| GAGCGGGACTTCTATATTTG+AGG | - | chr1_2:75624061-75624080 | Msa0092820:intron | 45.0% | |
| GCATGTGCATGCTTCTTACA+AGG | + | chr1_2:75624106-75624125 | None:intergenic | 45.0% | |
| TATGTCGTCTTCACAGGATC+AGG | - | chr1_2:75624371-75624390 | Msa0092820:intron | 45.0% | |
| !! | CACAGGCCGAAATGGATTAA+AGG | - | chr1_2:75624433-75624452 | Msa0092820:CDS | 45.0% |
| AGACTCATGCAGTTGAATGG+AGG | - | chr1_2:75624593-75624612 | Msa0092820:CDS | 45.0% | |
| ! | GAGAAGGGGAAGAGTGGATT+TGG | + | chr1_2:75619063-75619082 | None:intergenic | 50.0% |
| TGATTGGAGAAGGGGAAGAG+TGG | + | chr1_2:75619069-75619088 | None:intergenic | 50.0% | |
| CTCTTCCCCTTCTCCAATCA+TGG | - | chr1_2:75619069-75619088 | Msa0092820:three_prime_UTR | 50.0% | |
| AGCAGCCATGATTGGAGAAG+GGG | + | chr1_2:75619077-75619096 | None:intergenic | 50.0% | |
| GAAGCAGCCATGATTGGAGA+AGG | + | chr1_2:75619079-75619098 | None:intergenic | 50.0% | |
| TGAGAACTTGCCTTGGTGAG+AGG | + | chr1_2:75619163-75619182 | None:intergenic | 50.0% | |
| ACTCTCAGTCACCTCCGATA+AGG | - | chr1_2:75619343-75619362 | Msa0092820:three_prime_UTR | 50.0% | |
| GCTGAGGATATTGATGCTGG+TGG | - | chr1_2:75619565-75619584 | Msa0092820:CDS | 50.0% | |
| ! | TGTTGTGTCTTTGGCACCGA+CGG | - | chr1_2:75619697-75619716 | Msa0092820:intron | 50.0% |
| CATACAGAGGTTGGACGCAT+TGG | - | chr1_2:75620741-75620760 | Msa0092820:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr1_2:75621051-75621070 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr1_2:75621048-75621067 | Msa0092820:intron | 50.0% |
| CAACCCCACTTAGTGGGATA+AGG | + | chr1_2:75621056-75621075 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+TGG | - | chr1_2:75621054-75621073 | Msa0092820:intron | 50.0% | |
| CAAAGCCAACCCCACTTAGT+GGG | + | chr1_2:75621062-75621081 | None:intergenic | 50.0% | |
| !! | CACTAAGTGGGGTTGGCTTT+GGG | - | chr1_2:75621061-75621080 | Msa0092820:intron | 50.0% |
| !! | ACTAAGTGGGGTTGGCTTTG+GGG | - | chr1_2:75621062-75621081 | Msa0092820:intron | 50.0% |
| CTCACTTGCTCTGCTATCCT+GGG | - | chr1_2:75621316-75621335 | Msa0092820:intron | 50.0% | |
| TCACTTGCTCTGCTATCCTG+GGG | - | chr1_2:75621317-75621336 | Msa0092820:intron | 50.0% | |
| GGAGGTGATGACTGGAATGA+GGG | + | chr1_2:75621675-75621694 | None:intergenic | 50.0% | |
| AGGAGGTGATGACTGGAATG+AGG | + | chr1_2:75621676-75621695 | None:intergenic | 50.0% | |
| GTGCAAAGAGGAAGTGATGG+AGG | + | chr1_2:75621810-75621829 | None:intergenic | 50.0% | |
| ! | CTGATGGGCCACACAGAAAA+GGG | + | chr1_2:75621852-75621871 | None:intergenic | 50.0% |
| ! | ACTGATGGGCCACACAGAAA+AGG | + | chr1_2:75621853-75621872 | None:intergenic | 50.0% |
| GCAAGCATCTGGCATACTGA+TGG | + | chr1_2:75621868-75621887 | None:intergenic | 50.0% | |
| AGGAGTCAGGGGAAGGTAAT+GGG | + | chr1_2:75622076-75622095 | None:intergenic | 50.0% | |
| CTGCAGTCATCCAAGGTACA+CGG | + | chr1_2:75622240-75622259 | None:intergenic | 50.0% | |
| TCCCAAGTCTCCATGGAGTA+TGG | + | chr1_2:75622266-75622285 | None:intergenic | 50.0% | |
| ! | TGAACGGGTCGTGATTGGTT+AGG | + | chr1_2:75622432-75622451 | None:intergenic | 50.0% |
| GATTATATGACCACCGGTGG+AGG | + | chr1_2:75622540-75622559 | None:intergenic | 50.0% | |
| CTACTGGTGGTTATGTGGCT+TGG | - | chr1_2:75623581-75623600 | Msa0092820:intron | 50.0% | |
| ACTGGTGGTTATGTGGCTTG+GGG | - | chr1_2:75623583-75623602 | Msa0092820:intron | 50.0% | |
| ACCTCCCTGTGACTAAGCAA+CGG | - | chr1_2:75623984-75624003 | Msa0092820:CDS | 50.0% | |
| GTCAGATTCACAGGCCGAAA+TGG | - | chr1_2:75624425-75624444 | Msa0092820:CDS | 50.0% | |
| CTGGTGCAAGTATGCTCTGA+GGG | + | chr1_2:75624487-75624506 | None:intergenic | 50.0% | |
| ACTGGTGCAAGTATGCTCTG+AGG | + | chr1_2:75624488-75624507 | None:intergenic | 50.0% | |
| TGGAGTGGGCAAGGGAATTG+CGG | + | chr1_2:75619140-75619159 | None:intergenic | 55.0% | |
| GAACTTGCCTTGGTGAGAGG+TGG | + | chr1_2:75619160-75619179 | None:intergenic | 55.0% | |
| ! | GAGGTTGGACGCATTGGCAT+AGG | - | chr1_2:75620747-75620766 | Msa0092820:intron | 55.0% |
| CCAAAGCCAACCCCACTTAG+TGG | + | chr1_2:75621063-75621082 | None:intergenic | 55.0% | |
| !! | CCACTAAGTGGGGTTGGCTT+TGG | - | chr1_2:75621060-75621079 | Msa0092820:intron | 55.0% |
| GCTCACTTGCTCTGCTATCC+TGG | - | chr1_2:75621315-75621334 | Msa0092820:intron | 55.0% | |
| GGGAGTTATTGCAGAGGGCA+AGG | - | chr1_2:75621370-75621389 | Msa0092820:intron | 55.0% | |
| GGTGATGACTGGAATGAGGG+AGG | + | chr1_2:75621672-75621691 | None:intergenic | 55.0% | |
| GGGCCACACAGAAAAGGGAA+GGG | + | chr1_2:75621847-75621866 | None:intergenic | 55.0% | |
| TGGGCCACACAGAAAAGGGA+AGG | + | chr1_2:75621848-75621867 | None:intergenic | 55.0% | |
| GAGGAGTCAGGGGAAGGTAA+TGG | + | chr1_2:75622077-75622096 | None:intergenic | 55.0% | |
| GATAAGGAGGAGTCAGGGGA+AGG | + | chr1_2:75622083-75622102 | None:intergenic | 55.0% | |
| GAGGTCCCTGCCTCACTAAT+GGG | + | chr1_2:75622384-75622403 | None:intergenic | 55.0% | |
| AGAGGTCCCTGCCTCACTAA+TGG | + | chr1_2:75622385-75622404 | None:intergenic | 55.0% | |
| TGAGGCAGGGACCTCTCAAT+GGG | - | chr1_2:75622389-75622408 | Msa0092820:intron | 55.0% | |
| TGGGGTCACTCCACTCTTGT+TGG | - | chr1_2:75623601-75623620 | Msa0092820:intron | 55.0% | |
| CTCGCCGTTGCTTAGTCACA+GGG | + | chr1_2:75623991-75624010 | None:intergenic | 55.0% | |
| GAAGTCCCGCTCCATTCAGT+TGG | + | chr1_2:75624053-75624072 | None:intergenic | 55.0% | |
| GGAGTGGGCAAGGGAATTGC+GGG | + | chr1_2:75619139-75619158 | None:intergenic | 60.0% | |
| GTGAGAGGTGGAGTGGGCAA+GGG | + | chr1_2:75619148-75619167 | None:intergenic | 60.0% | |
| GCCTTGGTGAGAGGTGGAGT+GGG | + | chr1_2:75619154-75619173 | None:intergenic | 60.0% | |
| TGCCTTGGTGAGAGGTGGAG+TGG | + | chr1_2:75619155-75619174 | None:intergenic | 60.0% | |
| GTGAGGCAGGGACCTCTCAA+TGG | - | chr1_2:75622388-75622407 | Msa0092820:intron | 60.0% | |
| GGAGGCAGGGACCTCTCAAT+GGG | + | chr1_2:75622522-75622541 | None:intergenic | 60.0% | |
| TGGAGGCAGGGACCTCTCAA+TGG | + | chr1_2:75622523-75622542 | None:intergenic | 60.0% | |
| TATGACCACCGGTGGAGGCA+GGG | + | chr1_2:75622535-75622554 | None:intergenic | 60.0% | |
| ATATGACCACCGGTGGAGGC+AGG | + | chr1_2:75622536-75622555 | None:intergenic | 60.0% | |
| TGGCAACCTGTTCGCCTGCT+CGG | - | chr1_2:75623554-75623573 | Msa0092820:intron | 60.0% | |
| AGTATCCCGAGCAGGCGAAC+AGG | + | chr1_2:75623563-75623582 | None:intergenic | 60.0% | |
| TCGCCTGCTCGGGATACTAC+TGG | - | chr1_2:75623565-75623584 | Msa0092820:intron | 60.0% | |
| CCACCAGTAGTATCCCGAGC+AGG | + | chr1_2:75623571-75623590 | None:intergenic | 60.0% | |
| CCTGCTCGGGATACTACTGG+TGG | - | chr1_2:75623568-75623587 | Msa0092820:intron | 60.0% | |
| GCCGTTGCTTAGTCACAGGG+AGG | + | chr1_2:75623988-75624007 | None:intergenic | 60.0% | |
| CCTCGCCGTTGCTTAGTCAC+AGG | + | chr1_2:75623992-75624011 | None:intergenic | 60.0% | |
| CCTGTGACTAAGCAACGGCG+AGG | - | chr1_2:75623989-75624008 | Msa0092820:CDS | 60.0% | |
| GTGGGCAAGGGAATTGCGGG+TGG | + | chr1_2:75619136-75619155 | None:intergenic | 65.0% | |
| GGTGAGAGGTGGAGTGGGCA+AGG | + | chr1_2:75619149-75619168 | None:intergenic | 65.0% | |
| GCCCACTCCACCTCTCACCA+AGG | - | chr1_2:75619150-75619169 | Msa0092820:three_prime_UTR | 65.0% | |
| TGAGAGGTCCCTGCCTCCAC+CGG | - | chr1_2:75622524-75622543 | Msa0092820:intron | 65.0% | |
| GGCAACCTGTTCGCCTGCTC+GGG | - | chr1_2:75623555-75623574 | Msa0092820:intron | 65.0% | |
| GAGGTCCCTGCCTCCACCGG+TGG | - | chr1_2:75622527-75622546 | Msa0092820:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 75618857 | 75624731 | 75618857 | ID=Msa0092820;Name=Msa0092820 |
| chr1_2 | mRNA | 75618857 | 75624731 | 75618857 | ID=Msa0092820-mRNA-1;Parent=Msa0092820;Name=Msa0092820-mRNA-1;_AED=0.07;_eAED=0.07;_QI=84|1|1|1|1|1|10|674|359 |
| chr1_2 | exon | 75618857 | 75619609 | 75618857 | ID=Msa0092820-mRNA-1:exon:26604;Parent=Msa0092820-mRNA-1 |
| chr1_2 | exon | 75619712 | 75619794 | 75619712 | ID=Msa0092820-mRNA-1:exon:26603;Parent=Msa0092820-mRNA-1 |
| chr1_2 | exon | 75619961 | 75620041 | 75619961 | ID=Msa0092820-mRNA-1:exon:26602;Parent=Msa0092820-mRNA-1 |
| chr1_2 | exon | 75620600 | 75620615 | 75620600 | ID=Msa0092820-mRNA-1:exon:26601;Parent=Msa0092820-mRNA-1 |
| chr1_2 | exon | 75622197 | 75622275 | 75622197 | ID=Msa0092820-mRNA-1:exon:26600;Parent=Msa0092820-mRNA-1 |
| chr1_2 | exon | 75622766 | 75622840 | 75622766 | ID=Msa0092820-mRNA-1:exon:26599;Parent=Msa0092820-mRNA-1 |
| chr1_2 | exon | 75623405 | 75623498 | 75623405 | ID=Msa0092820-mRNA-1:exon:26598;Parent=Msa0092820-mRNA-1 |
| chr1_2 | exon | 75623844 | 75624068 | 75623844 | ID=Msa0092820-mRNA-1:exon:26597;Parent=Msa0092820-mRNA-1 |
| chr1_2 | exon | 75624149 | 75624265 | 75624149 | ID=Msa0092820-mRNA-1:exon:26596;Parent=Msa0092820-mRNA-1 |
| chr1_2 | exon | 75624417 | 75624731 | 75624417 | ID=Msa0092820-mRNA-1:exon:26595;Parent=Msa0092820-mRNA-1 |
| chr1_2 | five_prime_UTR | 75624648 | 75624731 | 75624648 | ID=Msa0092820-mRNA-1:five_prime_utr;Parent=Msa0092820-mRNA-1 |
| chr1_2 | CDS | 75624417 | 75624647 | 75624417 | ID=Msa0092820-mRNA-1:cds;Parent=Msa0092820-mRNA-1 |
| chr1_2 | CDS | 75624149 | 75624265 | 75624149 | ID=Msa0092820-mRNA-1:cds;Parent=Msa0092820-mRNA-1 |
| chr1_2 | CDS | 75623844 | 75624068 | 75623844 | ID=Msa0092820-mRNA-1:cds;Parent=Msa0092820-mRNA-1 |
| chr1_2 | CDS | 75623405 | 75623498 | 75623405 | ID=Msa0092820-mRNA-1:cds;Parent=Msa0092820-mRNA-1 |
| chr1_2 | CDS | 75622766 | 75622840 | 75622766 | ID=Msa0092820-mRNA-1:cds;Parent=Msa0092820-mRNA-1 |
| chr1_2 | CDS | 75622197 | 75622275 | 75622197 | ID=Msa0092820-mRNA-1:cds;Parent=Msa0092820-mRNA-1 |
| chr1_2 | CDS | 75620600 | 75620615 | 75620600 | ID=Msa0092820-mRNA-1:cds;Parent=Msa0092820-mRNA-1 |
| chr1_2 | CDS | 75619961 | 75620041 | 75619961 | ID=Msa0092820-mRNA-1:cds;Parent=Msa0092820-mRNA-1 |
| chr1_2 | CDS | 75619712 | 75619794 | 75619712 | ID=Msa0092820-mRNA-1:cds;Parent=Msa0092820-mRNA-1 |
| chr1_2 | CDS | 75619531 | 75619609 | 75619531 | ID=Msa0092820-mRNA-1:cds;Parent=Msa0092820-mRNA-1 |
| chr1_2 | three_prime_UTR | 75618857 | 75619530 | 75618857 | ID=Msa0092820-mRNA-1:three_prime_utr;Parent=Msa0092820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
