AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1370590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1370590 MtrunA17_Chr4g0073891 97.642 636 10 2 1 636 1 631 0.0 1261
Msa1370590 MtrunA17_Chr4g0003161 30.962 239 147 3 397 635 75 295 8.53e-31 126
Msa1370590 MtrunA17_Chr7g0266491 28.082 292 192 4 332 623 75 348 6.48e-30 124
Msa1370590 MtrunA17_Chr2g0333241 30.544 239 148 3 397 635 75 295 1.13e-29 122
Msa1370590 MtrunA17_Chr8g0350161 29.730 296 179 7 348 635 94 368 3.75e-27 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1370590 AT4G30600.2 75.307 652 127 14 1 636 1 634 0.0 887
Msa1370590 AT4G30600.1 75.307 652 127 14 1 636 1 634 0.0 887
Msa1370590 AT1G48900.2 26.797 306 206 3 330 635 8 295 4.77e-32 129
Msa1370590 AT1G48900.1 26.797 306 206 3 330 635 8 295 5.85e-32 130
Msa1370590 AT5G03940.1 28.571 294 192 4 330 623 83 358 7.92e-32 130
Msa1370590 AT1G15310.1 28.727 275 178 3 361 635 39 295 1.38e-31 129
Msa1370590 AT2G45770.1 29.667 300 180 8 344 635 89 365 4.12e-27 114
Msa1370590 AT5G49500.1 24.351 308 213 4 330 635 8 297 2.47e-23 104
Msa1370590 AT5G49500.2 29.480 173 111 2 463 635 14 175 6.12e-20 92.8

Find 160 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTTTCATCCTTTCATTTA+AGG 0.135782 tig0019129:+157082 None:intergenic
GCAGTTTGGTTTGTTTATTT+TGG 0.181230 tig0019129:-156927 Msa1370590:three_prime_UTR
GGATAGGAAGGTTGATTATT+TGG 0.186314 tig0019129:-160436 Msa1370590:CDS
CTTTCAATGGTTTACATATC+TGG 0.196127 tig0019129:-157186 Msa1370590:CDS
TGATTATGCAGGTTGCTTAC+TGG 0.239203 tig0019129:-158862 Msa1370590:intron
GTTGGTAATGTTAGTGTAAA+TGG 0.240516 tig0019129:-160675 Msa1370590:CDS
CATAACCCTTCTCAAATATA+GGG 0.264100 tig0019129:+158659 None:intergenic
TCATAACCCTTCTCAAATAT+AGG 0.269160 tig0019129:+158658 None:intergenic
CTCTGGTCATGCAATGAAAT+TGG 0.273870 tig0019129:-161230 Msa1370590:CDS
GTTGTATTTGTTGGAGTTAA+TGG 0.282982 tig0019129:-159007 Msa1370590:CDS
CTTTATTCCTAACCTTCTTC+TGG 0.284805 tig0019129:+160604 None:intergenic
TATTGCTGGGAAGGCCAATT+TGG 0.285068 tig0019129:-159515 Msa1370590:CDS
AGTTTGGCCTACAGAGTAAT+AGG 0.294677 tig0019129:+156970 None:intergenic
CCATATGTTGTTGTATTTGT+TGG 0.324829 tig0019129:-159016 Msa1370590:CDS
CCTGACCTGGTCTTATTTGT+TGG 0.326012 tig0019129:-157800 Msa1370590:CDS
CAAGTCCGACTTCTCCAAAT+TGG 0.330709 tig0019129:+159501 None:intergenic
AAATCGCGTTACCTGGGTTT+GGG 0.339392 tig0019129:+161319 None:intergenic
AACCAAGGCTGAGCCGAAAA+AGG 0.357649 tig0019129:-160550 Msa1370590:CDS
GACTCATGCACGCAGACTTC+AGG 0.360707 tig0019129:-158765 Msa1370590:intron
ATGCTTGTGCTCAGTATTGC+TGG 0.365590 tig0019129:-159529 Msa1370590:intron
AAAGTCATAGCCACATAGTT+TGG 0.375619 tig0019129:+156954 None:intergenic
AAAATCGCGTTACCTGGGTT+TGG 0.383736 tig0019129:+161318 None:intergenic
CAAGATCCCATCAATCAATC+TGG 0.383740 tig0019129:+157591 None:intergenic
AAACTATGTGGCTATGACTT+TGG 0.384030 tig0019129:-156952 Msa1370590:three_prime_UTR
GAGTTTCTTGAGGTCGGTAT+AGG 0.387081 tig0019129:+157131 None:intergenic
CAGAAGAAGGTTAGGAATAA+AGG 0.388438 tig0019129:-160603 Msa1370590:CDS
ACGGATCATGTTGATGTTGA+TGG 0.394256 tig0019129:-160471 Msa1370590:CDS
GGTGGGAGCTGCACTTTCAA+TGG 0.401497 tig0019129:-157199 Msa1370590:CDS
CGGTGGTTGTAGGTGGGAAT+AGG 0.404012 tig0019129:-160878 Msa1370590:CDS
TTTGACAGTGCTCTCATCAA+TGG 0.412182 tig0019129:+157842 None:intergenic
ATAAATACATACCACATTCT+TGG 0.414415 tig0019129:+159441 None:intergenic
TCCTTCAGAGCTTTCAAAGC+TGG 0.420133 tig0019129:+159475 None:intergenic
TTGAGGAGTAACGGTGTTGT+TGG 0.422921 tig0019129:-160693 Msa1370590:CDS
CCAACAAATACAACAACATA+TGG 0.423685 tig0019129:+159016 None:intergenic
CTATGACTTTGGATGCAGTT+TGG 0.424172 tig0019129:-156941 Msa1370590:three_prime_UTR
GCCAGTGCTGGTGGTGGTGG+CGG 0.424543 tig0019129:-160807 Msa1370590:CDS
TTATTATTTGAGATTTGGTT+AGG 0.425421 tig0019129:+161420 None:intergenic
TGTGGCAAAAGAAGCAATTC+AGG 0.429961 tig0019129:-158620 Msa1370590:CDS
AAATCTAACTTAGTTTCAAC+GGG 0.430928 tig0019129:+160495 None:intergenic
TAGTGACAGTGAGGATGAAG+AGG 0.435461 tig0019129:-160367 Msa1370590:CDS
CAATTTGGAGAAGTCGGACT+TGG 0.441725 tig0019129:-159500 Msa1370590:CDS
AAATCGAATCCGGTGGTTGT+AGG 0.450153 tig0019129:-160888 Msa1370590:CDS
GTTCGACACTATTGATGATA+AGG 0.450965 tig0019129:-157560 Msa1370590:intron
AATGCCAGTGCTGGTGGTGG+TGG 0.452714 tig0019129:-160810 Msa1370590:CDS
ACCGCCACCACCACCAGCAC+TGG 0.454509 tig0019129:+160806 None:intergenic
CGTTCTGTTATTGTGAATAA+CGG 0.459586 tig0019129:-160729 Msa1370590:CDS
TGTTGATGGGGATGCTGATA+AGG 0.462630 tig0019129:-160457 Msa1370590:CDS
GGAAGCTTCACGGAATGGTT+CGG 0.463640 tig0019129:-158599 Msa1370590:CDS
ATAGGCTCCAGAAGAAGGTT+AGG 0.465195 tig0019129:-160611 Msa1370590:CDS
AGTGCTGGTGGTGGTGGCGG+TGG 0.465276 tig0019129:-160804 Msa1370590:CDS
TCAGTGGCTGCAAGTCTTGA+AGG 0.467409 tig0019129:-159279 Msa1370590:CDS
GGCGTTCTATTGACATATTG+AGG 0.470946 tig0019129:-159069 Msa1370590:CDS
CAAGAGGAGGATTAATCCTC+TGG 0.471238 tig0019129:-161247 Msa1370590:CDS
CCTACACCCAGATTGATTGA+TGG 0.472241 tig0019129:-157598 Msa1370590:CDS
CGGATCATGTTGATGTTGAT+GGG 0.473173 tig0019129:-160470 Msa1370590:CDS
GAAGGTTGATTATTTGGCTA+AGG 0.473509 tig0019129:-160430 Msa1370590:CDS
TGGAGCTCCAGTCATGTTTG+TGG 0.474210 tig0019129:-157166 Msa1370590:CDS
CCAACAAATAAGACCAGGTC+AGG 0.474859 tig0019129:+157800 None:intergenic
TTTGTTGGAGTTAATGGAGT+TGG 0.477015 tig0019129:-159001 Msa1370590:CDS
TGGAAGGGAGATGGATCTGA+TGG 0.483093 tig0019129:-160840 Msa1370590:CDS
AAGGATATCTTCCACAGTGC+AGG 0.486091 tig0019129:-159235 Msa1370590:intron
AAAATCTCGATACACGGTTC+TGG 0.486570 tig0019129:+160968 None:intergenic
AAAATCTAACTTAGTTTCAA+CGG 0.490122 tig0019129:+160494 None:intergenic
GAGCTGCTTATTCTCTCAAA+TGG 0.492519 tig0019129:-161112 Msa1370590:CDS
ATGGGGATGCTGATAAGGAT+AGG 0.493111 tig0019129:-160452 Msa1370590:CDS
CTTATTTGTTGGAGAAGCAC+TGG 0.493495 tig0019129:-157789 Msa1370590:CDS
GCTTGTGATACATTTCGATC+AGG 0.496091 tig0019129:-158806 Msa1370590:CDS
GTTAGGAATAAAGGCGGGAA+TGG 0.496788 tig0019129:-160594 Msa1370590:CDS
TGTAAATAGGCTCCAGAAGA+AGG 0.499134 tig0019129:-160616 Msa1370590:CDS
ATCTCGATACACGGTTCTGG+TGG 0.501240 tig0019129:+160971 None:intergenic
GATGATGAGGATGATGATGC+TGG 0.501399 tig0019129:-160339 Msa1370590:CDS
TGTTAATCCTATTACTCTGT+AGG 0.507822 tig0019129:-156977 Msa1370590:three_prime_UTR
GCGTTCTATTGACATATTGA+GGG 0.507989 tig0019129:-159068 Msa1370590:CDS
AGACCAGGTCAGGATTGTTA+AGG 0.512658 tig0019129:+157810 None:intergenic
CTATTCCCACCTACAACCAC+CGG 0.515311 tig0019129:+160879 None:intergenic
CCAGTCATGTTTGTGGGATG+CGG 0.515363 tig0019129:-157159 Msa1370590:CDS
TCAGATCCCTATATTTGAGA+AGG 0.520704 tig0019129:-158665 Msa1370590:intron
CTACACCCAGATTGATTGAT+GGG 0.521118 tig0019129:-157597 Msa1370590:CDS
ACGGTAACGGTTATAATTTG+AGG 0.521482 tig0019129:-160710 Msa1370590:CDS
CAGGAGCTGTTGAGCAGTTG+CGG 0.524608 tig0019129:-158787 Msa1370590:CDS
GAAATTGGCAACGCTTTGAA+AGG 0.527215 tig0019129:-161215 Msa1370590:CDS
GGAGCTCCAGTCATGTTTGT+GGG 0.528002 tig0019129:-157165 Msa1370590:CDS
CAGATCCCTATATTTGAGAA+GGG 0.528857 tig0019129:-158664 Msa1370590:CDS
GACGTTGAGTTTCTTGAGGT+CGG 0.531116 tig0019129:+157125 None:intergenic
AAGCAATTCAGGAAGCTTCA+CGG 0.533244 tig0019129:-158609 Msa1370590:CDS
GGCGGCAATGGAAGATGCAC+TGG 0.533895 tig0019129:-159110 Msa1370590:CDS
CGACACAGCTGGTCGTATGC+AGG 0.535402 tig0019129:-158563 Msa1370590:intron
ATTCAGGAAGCTTCACGGAA+TGG 0.540152 tig0019129:-158604 Msa1370590:CDS
GGAACAAGGTGAGAGTATGA+TGG 0.543614 tig0019129:-160409 Msa1370590:CDS
TCGAATCCGGTGGTTGTAGG+TGG 0.545919 tig0019129:-160885 Msa1370590:CDS
TGTGCTCAGTATTGCTGGGA+AGG 0.545968 tig0019129:-159524 Msa1370590:intron
GATTCGATCTTGTCTTCTAG+AGG 0.546611 tig0019129:-161174 Msa1370590:CDS
TGTCTTCTAGAGGAGCGATC+TGG 0.547527 tig0019129:-161164 Msa1370590:CDS
GGATTTGAAGAAATCGAATC+CGG 0.550640 tig0019129:-160898 Msa1370590:CDS
CAATCTGGGTGTAGGAGATG+TGG 0.553386 tig0019129:+157606 None:intergenic
AAAATCTACTAATCTTGCTA+AGG 0.553829 tig0019129:-158978 Msa1370590:intron
CAGGTGACATGGAAGGGAGA+TGG 0.559417 tig0019129:-160849 Msa1370590:CDS
CCGCATCCCACAAACATGAC+TGG 0.559796 tig0019129:+157159 None:intergenic
ACCAGCTTTGAAAGCTCTGA+AGG 0.559926 tig0019129:-159476 Msa1370590:CDS
TTGAGAGAATAAGCAGCTCC+AGG 0.560375 tig0019129:+161116 None:intergenic
AAACAGCAGGTGACATGGAA+GGG 0.561061 tig0019129:-160855 Msa1370590:CDS
GATTATTTGGCTAAGGAACA+AGG 0.566749 tig0019129:-160423 Msa1370590:CDS
GTTATTGTGAATAACGGTAA+CGG 0.570694 tig0019129:-160723 Msa1370590:CDS
CAATTTCATTGCATGACCAG+AGG 0.575171 tig0019129:+161231 None:intergenic
GGATGCTGATAAGGATAGGA+AGG 0.575386 tig0019129:-160448 Msa1370590:CDS
GCAGTTGAAGATTGAAGCTG+AGG 0.579144 tig0019129:-160931 Msa1370590:CDS
AAGATCCCATCAATCAATCT+GGG 0.579799 tig0019129:+157592 None:intergenic
CCATCAATCAATCTGGGTGT+AGG 0.581937 tig0019129:+157598 None:intergenic
GAAGACGCTCCTTAAATGAA+AGG 0.584086 tig0019129:-157091 Msa1370590:exon
TGAAGCTGAGGCTCGTTCTG+AGG 0.584141 tig0019129:-160919 Msa1370590:CDS
ACTTGACGTTGAGTTTCTTG+AGG 0.584980 tig0019129:+157121 None:intergenic
GAAACAGCAGGTGACATGGA+AGG 0.585391 tig0019129:-160856 Msa1370590:CDS
CAATCTGAATAAATTATATG+TGG 0.586190 tig0019129:-156767 Msa1370590:three_prime_UTR
GGGAAGAAGAATGCCAGTGC+TGG 0.586484 tig0019129:-160819 Msa1370590:CDS
CTGATCAAAATCTCGATACA+CGG 0.587720 tig0019129:+160962 None:intergenic
CTACCTTAACAATCCTGACC+TGG 0.587728 tig0019129:-157813 Msa1370590:CDS
TTTGTTGGAGAAGCACTGGT+TGG 0.588986 tig0019129:-157785 Msa1370590:CDS
GGTTATAATTTGAGGAGTAA+CGG 0.590987 tig0019129:-160702 Msa1370590:CDS
ATAGGAAACAGCAGGTGACA+TGG 0.591167 tig0019129:-160860 Msa1370590:CDS
GTTTGAAGAATGACGGTGAT+GGG 0.596520 tig0019129:-160782 Msa1370590:CDS
TGTTAAGCGTGAATTCTCGC+AGG 0.597191 tig0019129:-161003 Msa1370590:CDS
TTTAAGGAGCGTCTTCACAA+TGG 0.598414 tig0019129:+157098 None:intergenic
TGCTTGTGCTCAGTATTGCT+GGG 0.598645 tig0019129:-159528 Msa1370590:intron
CGAATCCGGTGGTTGTAGGT+GGG 0.598863 tig0019129:-160884 Msa1370590:CDS
AGGTGGGAATAGGAAACAGC+AGG 0.600879 tig0019129:-160868 Msa1370590:CDS
AAACATTCGTGACAGGTCAC+AGG 0.602301 tig0019129:+157027 None:intergenic
AATTCTGCATCTGCTCTATG+TGG 0.603688 tig0019129:-161042 Msa1370590:CDS
AAACTGAAAACATTCGTGAC+AGG 0.605467 tig0019129:+157020 None:intergenic
TGAAGAGGATGATGATGATG+AGG 0.607270 tig0019129:-160352 Msa1370590:CDS
TTCATGCTGCAAAAGAGCAA+AGG 0.608654 tig0019129:-159042 Msa1370590:CDS
ATGATGAGGATGATGATGCT+GGG 0.610615 tig0019129:-160338 Msa1370590:CDS
ACACAATGTTAATGTCATGA+TGG 0.611925 tig0019129:-158831 Msa1370590:CDS
GAGAATGATAGTGTAAACAA+TGG 0.612652 tig0019129:-160648 Msa1370590:CDS
ACTCTGTAGGCCAAACTATG+TGG 0.615418 tig0019129:-156964 Msa1370590:three_prime_UTR
GATCGAATCAATGTATCGAT+CGG 0.617091 tig0019129:+161188 None:intergenic
CTTCTCCAACAAATAAGACC+AGG 0.622372 tig0019129:+157795 None:intergenic
GTTGTGCTAGTCGACACAGC+TGG 0.625758 tig0019129:-158574 Msa1370590:CDS
TCTTACAATTACGATGCACC+TGG 0.626789 tig0019129:-161134 Msa1370590:CDS
TCTCGATACACGGTTCTGGT+GGG 0.628791 tig0019129:+160972 None:intergenic
AACAGACGCTGTTGTAACCA+AGG 0.629920 tig0019129:-160565 Msa1370590:CDS
AAGAATGCCAGTGCTGGTGG+TGG 0.631319 tig0019129:-160813 Msa1370590:CDS
GGAAGGGAGATGGATCTGAT+GGG 0.633548 tig0019129:-160839 Msa1370590:CDS
GAAGGCCAATTTGGAGAAGT+CGG 0.633774 tig0019129:-159506 Msa1370590:CDS
GGTTTGAAGAATGACGGTGA+TGG 0.634038 tig0019129:-160783 Msa1370590:CDS
AGAAGGTTAGGAATAAAGGC+GGG 0.636662 tig0019129:-160599 Msa1370590:CDS
CGTTATTCACAATAACAGAA+CGG 0.639458 tig0019129:+160730 None:intergenic
GGCGGTGGTTTGAAGAATGA+CGG 0.640321 tig0019129:-160789 Msa1370590:CDS
TGAGAAGCTATGTGAATCAG+TGG 0.640944 tig0019129:-159295 Msa1370590:CDS
TCAGCTTTCAAAGTTCAACC+AGG 0.642481 tig0019129:-157747 Msa1370590:intron
AAGAAGAATGCCAGTGCTGG+TGG 0.643037 tig0019129:-160816 Msa1370590:CDS
TGGGTGTAGGAGATGTGGAA+AGG 0.654736 tig0019129:+157611 None:intergenic
TAGACTCATGACCAAGAATG+TGG 0.655583 tig0019129:-159452 Msa1370590:intron
GGATCATGTTGATGTTGATG+GGG 0.663445 tig0019129:-160469 Msa1370590:CDS
TTTGAAGAAATCGAATCCGG+TGG 0.670497 tig0019129:-160895 Msa1370590:CDS
TCTAGAGGAGCGATCTGGTG+CGG 0.676914 tig0019129:-161159 Msa1370590:CDS
AAGAAGGTTAGGAATAAAGG+CGG 0.679488 tig0019129:-160600 Msa1370590:CDS
AACGCATAAAACCCAAACCC+AGG 0.680999 tig0019129:-161330 Msa1370590:intron
AATATGTCAATAGAACGCCT+AGG 0.693947 tig0019129:+159073 None:intergenic
ACAGAGTAATAGGATTAACA+AGG 0.704852 tig0019129:+156980 None:intergenic
TAGAAACCAAACCTGCACTG+TGG 0.728001 tig0019129:+159224 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATTGTATATAAATAAA+AGG + tig0019129:159015-159034 None:intergenic 10.0%
!!! AAGTTTTATTATTTGAGATT+TGG + tig0019129:156772-156791 None:intergenic 15.0%
!!! TTTTGAATTTGTTTGTAATT+AGG - tig0019129:156885-156904 Msa1370590:three_prime_UTR 15.0%
!!! TATTTAACTTGTAATGATAT+TGG - tig0019129:158292-158311 Msa1370590:intron 15.0%
!! ATAAATTAAATTGTTACTCT+TGG - tig0019129:158387-158406 Msa1370590:intron 15.0%
!! ATTGTATATAAATAAAAGGT+CGG + tig0019129:159011-159030 None:intergenic 15.0%
!! TTAATATATCCCAATAAAAA+TGG - tig0019129:161315-161334 Msa1370590:intron 15.0%
!!! TTATTATTTGAGATTTGGTT+AGG + tig0019129:156767-156786 None:intergenic 20.0%
!!! TTTTTCTTAACTACCTTTTT+CGG + tig0019129:157650-157669 None:intergenic 20.0%
!! AAAAGGTAGTTAAGAAAAAT+AGG - tig0019129:157651-157670 Msa1370590:intron 20.0%
!! AAAGGTAGTTAAGAAAAATA+GGG - tig0019129:157652-157671 Msa1370590:intron 20.0%
!! AAAATCTAACTTAGTTTCAA+CGG + tig0019129:157693-157712 None:intergenic 20.0%
!!! TGAAACTAAGTTAGATTTTA+CGG - tig0019129:157694-157713 Msa1370590:intron 20.0%
!!! AAACAATAAAAGTATTGTCA+AGG + tig0019129:158142-158161 None:intergenic 20.0%
!!! CAAAAGTTTATTGGTTTTAT+GGG - tig0019129:159668-159687 Msa1370590:intron 20.0%
!!! AAAAGTTTATTGGTTTTATG+GGG - tig0019129:159669-159688 Msa1370590:intron 20.0%
!!! AATGAACCTTTTATGTTTAT+TGG - tig0019129:160190-160209 Msa1370590:intron 20.0%
!! TCAATTCCAATAAACATAAA+AGG + tig0019129:160199-160218 None:intergenic 20.0%
!!! TTTTATGTTTATTGGAATTG+AGG - tig0019129:160198-160217 Msa1370590:intron 20.0%
!! TATTCTTGATGAACATTTAT+TGG - tig0019129:160702-160721 Msa1370590:CDS 20.0%
!! TAATCATTACCCATATTAAA+TGG + tig0019129:160748-160767 None:intergenic 20.0%
!!! TAATTATGTTTGATTTTGTC+AGG - tig0019129:160964-160983 Msa1370590:CDS 20.0%
!!! AACAGAAAACCATTTTTATT+GGG + tig0019129:161327-161346 None:intergenic 20.0%
!!! AAACAGAAAACCATTTTTAT+TGG + tig0019129:161328-161347 None:intergenic 20.0%
!! CAATCTGAATAAATTATATG+TGG - tig0019129:161417-161436 Msa1370590:five_prime_UTR 20.0%
! TAGTTAAGAAAAATAGGGTT+TGG - tig0019129:157657-157676 Msa1370590:intron 25.0%
! AGTTAAGAAAAATAGGGTTT+GGG - tig0019129:157658-157677 Msa1370590:intron 25.0%
! AAATCTAACTTAGTTTCAAC+GGG + tig0019129:157692-157711 None:intergenic 25.0%
! AGTGTTATATTTCCTTGAAT+TGG - tig0019129:158079-158098 Msa1370590:intron 25.0%
! AGACAAAAAAATCCAATTCA+AGG + tig0019129:158094-158113 None:intergenic 25.0%
! TAAGACATATGTGCATTATT+AGG - tig0019129:158259-158278 Msa1370590:intron 25.0%
! ATAAATACATACCACATTCT+TGG + tig0019129:158746-158765 None:intergenic 25.0%
!!! CTGCATTATTTTTCAAAACA+CGG + tig0019129:159055-159074 None:intergenic 25.0%
! AAAATCTACTAATCTTGCTA+AGG - tig0019129:159206-159225 Msa1370590:intron 25.0%
! TTGTTGAAGCAAAAGTTTAT+TGG - tig0019129:159659-159678 Msa1370590:intron 25.0%
!!! GCAAAAGTTTATTGGTTTTA+TGG - tig0019129:159667-159686 Msa1370590:intron 25.0%
!!! AAAGTTTATTGGTTTTATGG+GGG - tig0019129:159670-159689 Msa1370590:intron 25.0%
!! AATACTATTGGTTATCTGTT+AGG - tig0019129:159715-159734 Msa1370590:intron 25.0%
! TTCGTTAGTCAATATAAAAC+CGG + tig0019129:159756-159775 None:intergenic 25.0%
!!! GTTTTATATTGACTAACGAA+AGG - tig0019129:159756-159775 Msa1370590:intron 25.0%
!!! TTACTAACTTCTAGAATGAA+TGG - tig0019129:159874-159893 Msa1370590:intron 25.0%
! TAGAATGAATGGATATTAAG+TGG - tig0019129:159885-159904 Msa1370590:intron 25.0%
! GAATAAGTGCATAAAAGATT+GGG + tig0019129:159923-159942 None:intergenic 25.0%
! GTTTCTGCAACAAAATAAAT+GGG + tig0019129:160546-160565 None:intergenic 25.0%
! AGTTTCTGCAACAAAATAAA+TGG + tig0019129:160547-160566 None:intergenic 25.0%
!!! ATTTATTTTGTTGCAGAAAC+TGG - tig0019129:160546-160565 Msa1370590:CDS 25.0%
! CAACTTTGCAAGTAAATTTA+TGG - tig0019129:160666-160685 Msa1370590:CDS 25.0%
! TAAATTTATGGCTAAGCATT+TGG - tig0019129:160678-160697 Msa1370590:CDS 25.0%
! ACTAGCAAAGACAAAATAAA+GGG + tig0019129:160859-160878 None:intergenic 25.0%
! AACTAGCAAAGACAAAATAA+AGG + tig0019129:160860-160879 None:intergenic 25.0%
! TAGTTTCATCCTTTCATTTA+AGG + tig0019129:161105-161124 None:intergenic 25.0%
!!! GGATGAAACTATTTTAGTTT+CGG - tig0019129:161114-161133 Msa1370590:CDS 25.0%
!! AGTTTTCCAAGATAGATAAA+GGG + tig0019129:161296-161315 None:intergenic 25.0%
!! AAGTTTTCCAAGATAGATAA+AGG + tig0019129:161297-161316 None:intergenic 25.0%
!!! GTTTTAAATTGCTATGAAGA+GGG - tig0019129:161387-161406 Msa1370590:five_prime_UTR 25.0%
CGTTATTCACAATAACAGAA+CGG + tig0019129:157457-157476 None:intergenic 30.0%
CGTTCTGTTATTGTGAATAA+CGG - tig0019129:157455-157474 Msa1370590:intron 30.0%
GTTATTGTGAATAACGGTAA+CGG - tig0019129:157461-157480 Msa1370590:intron 30.0%
GGTTATAATTTGAGGAGTAA+CGG - tig0019129:157482-157501 Msa1370590:intron 30.0%
!! GTTGGTAATGTTAGTGTAAA+TGG - tig0019129:157509-157528 Msa1370590:intron 30.0%
! GAGAATGATAGTGTAAACAA+TGG - tig0019129:157536-157555 Msa1370590:intron 30.0%
! ATGGAGCTTTTGATGTAAAT+AGG - tig0019129:157555-157574 Msa1370590:intron 30.0%
TAATGATGATTTACTGCAAG+TGG - tig0019129:158168-158187 Msa1370590:intron 30.0%
AATTACACTCTAAACTTCCT+TGG - tig0019129:158204-158223 Msa1370590:intron 30.0%
ATTACACTCTAAACTTCCTT+GGG - tig0019129:158205-158224 Msa1370590:intron 30.0%
ATGAATAAGATTTCAACCCA+AGG + tig0019129:158224-158243 None:intergenic 30.0%
! AAAAACTGGCTTCATTTACA+AGG - tig0019129:158930-158949 Msa1370590:intron 30.0%
!!! CGTGTTTTGAAAAATAATGC+AGG - tig0019129:159053-159072 Msa1370590:CDS 30.0%
!!! GTTTTGAAAAATAATGCAGG+CGG - tig0019129:159056-159075 Msa1370590:CDS 30.0%
CCAACAAATACAACAACATA+TGG + tig0019129:159171-159190 None:intergenic 30.0%
CCATATGTTGTTGTATTTGT+TGG - tig0019129:159168-159187 Msa1370590:intron 30.0%
! GTTGTATTTGTTGGAGTTAA+TGG - tig0019129:159177-159196 Msa1370590:intron 30.0%
TATGTAAAAATTCCGTACGT+CGG - tig0019129:159259-159278 Msa1370590:CDS 30.0%
ACACAATGTTAATGTCATGA+TGG - tig0019129:159353-159372 Msa1370590:intron 30.0%
TCAAATATAGGGATCTGAAA+GGG + tig0019129:159517-159536 None:intergenic 30.0%
CATAACCCTTCTCAAATATA+GGG + tig0019129:159528-159547 None:intergenic 30.0%
TCATAACCCTTCTCAAATAT+AGG + tig0019129:159529-159548 None:intergenic 30.0%
ACCAAATGACTCAATACTAT+TGG - tig0019129:159703-159722 Msa1370590:intron 30.0%
! ACCAATAGTATTGAGTCATT+TGG + tig0019129:159707-159726 None:intergenic 30.0%
TATAAAACCGGTATTAATCC+CGG + tig0019129:159744-159763 None:intergenic 30.0%
AGTAACTGTTTCATTCAGTT+AGG + tig0019129:159859-159878 None:intergenic 30.0%
GGAATAAGTGCATAAAAGAT+TGG + tig0019129:159924-159943 None:intergenic 30.0%
TTAGAGGTTCCATTTCTTAA+GGG + tig0019129:159957-159976 None:intergenic 30.0%
ATTAGAGGTTCCATTTCTTA+AGG + tig0019129:159958-159977 None:intergenic 30.0%
GGAAAATTGTCATAGTTGAA+TGG - tig0019129:160219-160238 Msa1370590:intron 30.0%
! TTGTCATAGTTGAATGGTTT+TGG - tig0019129:160225-160244 Msa1370590:intron 30.0%
TGAATAAATTGAACCTAACC+TGG + tig0019129:160458-160477 None:intergenic 30.0%
ATGATAAGGTATGCAAATAC+TGG - tig0019129:160638-160657 Msa1370590:CDS 30.0%
CTTGATGAACATTTATTGGT+TGG - tig0019129:160706-160725 Msa1370590:CDS 30.0%
AAAGACAAAATAAAGGGAAG+GGG + tig0019129:160853-160872 None:intergenic 30.0%
CAAAGACAAAATAAAGGGAA+GGG + tig0019129:160854-160873 None:intergenic 30.0%
! CTATTTCTTGCGAATGAAAT+TGG + tig0019129:160911-160930 None:intergenic 30.0%
!! TTATGTTTGATTTTGTCAGG+TGG - tig0019129:160967-160986 Msa1370590:CDS 30.0%
!! TATGTTTGATTTTGTCAGGT+GGG - tig0019129:160968-160987 Msa1370590:CDS 30.0%
CTTTCAATGGTTTACATATC+TGG - tig0019129:160998-161017 Msa1370590:CDS 30.0%
ACAGAGTAATAGGATTAACA+AGG + tig0019129:161207-161226 None:intergenic 30.0%
TGTTAATCCTATTACTCTGT+AGG - tig0019129:161207-161226 Msa1370590:CDS 30.0%
!!! GCAGTTTGGTTTGTTTATTT+TGG - tig0019129:161257-161276 Msa1370590:CDS 30.0%
! TTTTCCAAGATAGATAAAGG+GGG + tig0019129:161294-161313 None:intergenic 30.0%
! GTTTTCCAAGATAGATAAAG+GGG + tig0019129:161295-161314 None:intergenic 30.0%
!! CGTTTTAAATTGCTATGAAG+AGG - tig0019129:161386-161405 Msa1370590:five_prime_UTR 30.0%
AATTCAAAATCGCGTTACCT+GGG + tig0019129:156874-156893 None:intergenic 35.0%
AAATTCAAAATCGCGTTACC+TGG + tig0019129:156875-156894 None:intergenic 35.0%
!!! CAGTTACTGATTTTCACAAG+AGG - tig0019129:156921-156940 Msa1370590:three_prime_UTR 35.0%
!!! TTACTGATTTTCACAAGAGG+AGG - tig0019129:156924-156943 Msa1370590:three_prime_UTR 35.0%
! GATCGAATCAATGTATCGAT+CGG + tig0019129:156999-157018 None:intergenic 35.0%
! TGGACTTTTCACAATGATCT+AGG - tig0019129:157092-157111 Msa1370590:exon 35.0%
CTGATCAAAATCTCGATACA+CGG + tig0019129:157225-157244 None:intergenic 35.0%
GGATTTGAAGAAATCGAATC+CGG - tig0019129:157286-157305 Msa1370590:intron 35.0%
! ACGGTAACGGTTATAATTTG+AGG - tig0019129:157474-157493 Msa1370590:intron 35.0%
CTTTATTCCTAACCTTCTTC+TGG + tig0019129:157583-157602 None:intergenic 35.0%
CAGAAGAAGGTTAGGAATAA+AGG - tig0019129:157581-157600 Msa1370590:CDS 35.0%
AAGAAGGTTAGGAATAAAGG+CGG - tig0019129:157584-157603 Msa1370590:CDS 35.0%
! GGATAGGAAGGTTGATTATT+TGG - tig0019129:157748-157767 Msa1370590:CDS 35.0%
! GAAGGTTGATTATTTGGCTA+AGG - tig0019129:157754-157773 Msa1370590:CDS 35.0%
GATTATTTGGCTAAGGAACA+AGG - tig0019129:157761-157780 Msa1370590:CDS 35.0%
!!! GATTTTTAGTAGTGACAGTG+AGG - tig0019129:157808-157827 Msa1370590:CDS 35.0%
AAGCCTGATGCTAAAAAGAA+GGG - tig0019129:157878-157897 Msa1370590:intron 35.0%
AACATCAATCGGAATCTATG+AGG + tig0019129:158038-158057 None:intergenic 35.0%
TCAAGCAACACAACATCAAT+CGG + tig0019129:158049-158068 None:intergenic 35.0%
GCACATATGTCTTAAAGCAA+AGG + tig0019129:158253-158272 None:intergenic 35.0%
TTGGTATTCGTTTGAAAGTC+AGG - tig0019129:158311-158330 Msa1370590:intron 35.0%
ATTCGTTTGAAAGTCAGGAA+AGG - tig0019129:158316-158335 Msa1370590:intron 35.0%
CAATCAAAGCAACATGTAAG+AGG + tig0019129:158427-158446 None:intergenic 35.0%
TCACAAGGAAAATGGAAACA+GGG + tig0019129:158477-158496 None:intergenic 35.0%
! TGTTTCCATTTTCCTTGTGA+CGG - tig0019129:158477-158496 Msa1370590:intron 35.0%
TCAATCAAAGTAGCAGATCA+AGG + tig0019129:158543-158562 None:intergenic 35.0%
ATCCTCAACATCATTAGATG+TGG - tig0019129:158764-158783 Msa1370590:intron 35.0%
!! TTACATTCTGTGTCACTTGT+AGG - tig0019129:158853-158872 Msa1370590:CDS 35.0%
AAGTCTTGAAGGCAAAAAAC+TGG - tig0019129:158916-158935 Msa1370590:intron 35.0%
!!! TGGTTCGTATTTTAACTCCT+AGG - tig0019129:159094-159113 Msa1370590:CDS 35.0%
AATATGTCAATAGAACGCCT+AGG + tig0019129:159114-159133 None:intergenic 35.0%
GCGTTCTATTGACATATTGA+GGG - tig0019129:159116-159135 Msa1370590:intron 35.0%
TTTGTTGGAGTTAATGGAGT+TGG - tig0019129:159183-159202 Msa1370590:intron 35.0%
TACTAATCTTGCTAAGGTGA+AGG - tig0019129:159212-159231 Msa1370590:intron 35.0%
ATGTAAAAATTCCGTACGTC+GGG - tig0019129:159260-159279 Msa1370590:CDS 35.0%
GAAAATGGAATATCTCCTTC+AGG + tig0019129:159298-159317 None:intergenic 35.0%
CTGCATAATCACACAGAAAA+TGG + tig0019129:159313-159332 None:intergenic 35.0%
! CATTTTCTGTGTGATTATGC+AGG - tig0019129:159311-159330 Msa1370590:CDS 35.0%
ATCTGAAAGGGGGAATTATA+AGG + tig0019129:159505-159524 None:intergenic 35.0%
AAATATAGGGATCTGAAAGG+GGG + tig0019129:159515-159534 None:intergenic 35.0%
CAAATATAGGGATCTGAAAG+GGG + tig0019129:159516-159535 None:intergenic 35.0%
CTCAAATATAGGGATCTGAA+AGG + tig0019129:159518-159537 None:intergenic 35.0%
TCAGATCCCTATATTTGAGA+AGG - tig0019129:159519-159538 Msa1370590:intron 35.0%
CAGATCCCTATATTTGAGAA+GGG - tig0019129:159520-159539 Msa1370590:intron 35.0%
ATAAAACCGGTATTAATCCC+GGG + tig0019129:159743-159762 None:intergenic 35.0%
AACTGTTTCATTCAGTTAGG+CGG + tig0019129:159856-159875 None:intergenic 35.0%
AAGTGCATAAAAGATTGGGA+GGG + tig0019129:159919-159938 None:intergenic 35.0%
TAAGTGCATAAAAGATTGGG+AGG + tig0019129:159920-159939 None:intergenic 35.0%
TTTCTTAAGGGGATTCTGTT+AGG + tig0019129:159945-159964 None:intergenic 35.0%
AACAGAATCCCCTTAAGAAA+TGG - tig0019129:159945-159964 Msa1370590:intron 35.0%
TAGAGGTTCCATTTCTTAAG+GGG + tig0019129:159956-159975 None:intergenic 35.0%
TTCATGGCCCATTTCATTAT+TGG - tig0019129:160106-160125 Msa1370590:intron 35.0%
TCATGGCCCATTTCATTATT+GGG - tig0019129:160107-160126 Msa1370590:intron 35.0%
CTATCACTGTTTCAGTTTCT+AGG - tig0019129:160140-160159 Msa1370590:intron 35.0%
TTCATCTTACATGTCACTGA+TGG - tig0019129:160303-160322 Msa1370590:CDS 35.0%
TTTCAAAGTTCAACCAGGTT+AGG - tig0019129:160442-160461 Msa1370590:CDS 35.0%
!! TAGCTTTGTCCAACTACAAT+TGG - tig0019129:160482-160501 Msa1370590:CDS 35.0%
! AGCTTTGTCCAACTACAATT+GGG - tig0019129:160483-160502 Msa1370590:CDS 35.0%
GGGTTCAATAACAGACTTAT+GGG + tig0019129:160526-160545 None:intergenic 35.0%
TGGGTTCAATAACAGACTTA+TGG + tig0019129:160527-160546 None:intergenic 35.0%
AAGATCCCATCAATCAATCT+GGG + tig0019129:160595-160614 None:intergenic 35.0%
! GTTCGACACTATTGATGATA+AGG - tig0019129:160624-160643 Msa1370590:CDS 35.0%
! TGAACATTTATTGGTTGGCT+AGG - tig0019129:160711-160730 Msa1370590:CDS 35.0%
GGAGACTGTCCATTTAATAT+GGG - tig0019129:160736-160755 Msa1370590:CDS 35.0%
ATTCATTCGATGCTTTCTTG+TGG + tig0019129:160788-160807 None:intergenic 35.0%
TGAGATGGAAACAAAATCAG+CGG + tig0019129:160816-160835 None:intergenic 35.0%
AAGACAAAATAAAGGGAAGG+GGG + tig0019129:160852-160871 None:intergenic 35.0%
GCAAAGACAAAATAAAGGGA+AGG + tig0019129:160855-160874 None:intergenic 35.0%
AAACTGAAAACATTCGTGAC+AGG + tig0019129:161167-161186 None:intergenic 35.0%
AAAGTCATAGCCACATAGTT+TGG + tig0019129:161233-161252 None:intergenic 35.0%
AAACTATGTGGCTATGACTT+TGG - tig0019129:161232-161251 Msa1370590:CDS 35.0%
!! GGGTTTTATGCGTTTTGTTG+AGG + tig0019129:156848-156867 None:intergenic 40.0%
CAATTTCATTGCATGACCAG+AGG + tig0019129:156956-156975 None:intergenic 40.0%
CTCTGGTCATGCAATGAAAT+TGG - tig0019129:156954-156973 Msa1370590:three_prime_UTR 40.0%
! GAAATTGGCAACGCTTTGAA+AGG - tig0019129:156969-156988 Msa1370590:three_prime_UTR 40.0%
GATTCGATCTTGTCTTCTAG+AGG - tig0019129:157010-157029 Msa1370590:three_prime_UTR 40.0%
TCTTACAATTACGATGCACC+TGG - tig0019129:157050-157069 Msa1370590:three_prime_UTR 40.0%
GAGCTGCTTATTCTCTCAAA+TGG - tig0019129:157072-157091 Msa1370590:three_prime_UTR 40.0%
AATTCTGCATCTGCTCTATG+TGG - tig0019129:157142-157161 Msa1370590:CDS 40.0%
AAAATCTCGATACACGGTTC+TGG + tig0019129:157219-157238 None:intergenic 40.0%
TTTGAAGAAATCGAATCCGG+TGG - tig0019129:157289-157308 Msa1370590:intron 40.0%
GTTTGAAGAATGACGGTGAT+GGG - tig0019129:157402-157421 Msa1370590:intron 40.0%
!! AATGACGGTGATGGGAAAAA+TGG - tig0019129:157410-157429 Msa1370590:intron 40.0%
!! ATGACGGTGATGGGAAAAAT+GGG - tig0019129:157411-157430 Msa1370590:intron 40.0%
TGTAAATAGGCTCCAGAAGA+AGG - tig0019129:157568-157587 Msa1370590:CDS 40.0%
AGAAGGTTAGGAATAAAGGC+GGG - tig0019129:157585-157604 Msa1370590:CDS 40.0%
ACGGATCATGTTGATGTTGA+TGG - tig0019129:157713-157732 Msa1370590:intron 40.0%
CGGATCATGTTGATGTTGAT+GGG - tig0019129:157714-157733 Msa1370590:intron 40.0%
GGATCATGTTGATGTTGATG+GGG - tig0019129:157715-157734 Msa1370590:intron 40.0%
! TGAAGAGGATGATGATGATG+AGG - tig0019129:157832-157851 Msa1370590:CDS 40.0%
! ATGATGAGGATGATGATGCT+GGG - tig0019129:157846-157865 Msa1370590:CDS 40.0%
CAAGCCTGATGCTAAAAAGA+AGG - tig0019129:157877-157896 Msa1370590:intron 40.0%
!! CAACCCTTCTTTTTAGCATC+AGG + tig0019129:157884-157903 None:intergenic 40.0%
CTGATGCTAAAAAGAAGGGT+TGG - tig0019129:157882-157901 Msa1370590:intron 40.0%
! GGTTTTCATCTATGTTCCAG+AGG - tig0019129:157903-157922 Msa1370590:intron 40.0%
AAGTTCAGCAAGTTTACCTC+TGG + tig0019129:157922-157941 None:intergenic 40.0%
TGATGATTTACTGCAAGTGG+TGG - tig0019129:158171-158190 Msa1370590:intron 40.0%
GTCACAAGGAAAATGGAAAC+AGG + tig0019129:158478-158497 None:intergenic 40.0%
TAGACTCATGACCAAGAATG+TGG - tig0019129:158732-158751 Msa1370590:intron 40.0%
CACCACATCTAATGATGTTG+AGG + tig0019129:158769-158788 None:intergenic 40.0%
CTCAACATCATTAGATGTGG+TGG - tig0019129:158767-158786 Msa1370590:CDS 40.0%
TGAGAAGCTATGTGAATCAG+TGG - tig0019129:158889-158908 Msa1370590:intron 40.0%
AAAAATAATGCAGGCGGCAA+TGG - tig0019129:159062-159081 Msa1370590:CDS 40.0%
GGCGTTCTATTGACATATTG+AGG - tig0019129:159115-159134 Msa1370590:intron 40.0%
TTCATGCTGCAAAAGAGCAA+AGG - tig0019129:159142-159161 Msa1370590:intron 40.0%
TGATTATGCAGGTTGCTTAC+TGG - tig0019129:159322-159341 Msa1370590:intron 40.0%
GCTTGTGATACATTTCGATC+AGG - tig0019129:159378-159397 Msa1370590:intron 40.0%
TGAAAAAGATCCTGCTGTTG+TGG - tig0019129:159546-159565 Msa1370590:intron 40.0%
TGTGGCAAAAGAAGCAATTC+AGG - tig0019129:159564-159583 Msa1370590:intron 40.0%
AAGCAATTCAGGAAGCTTCA+CGG - tig0019129:159575-159594 Msa1370590:intron 40.0%
TTGGTTATCTGTTAGGAACC+CGG - tig0019129:159722-159741 Msa1370590:intron 40.0%
AAATTGAGCCACGCTCTTAT+AGG - tig0019129:159779-159798 Msa1370590:intron 40.0%
AGTAGGATATTCCTCTCTGA+AGG + tig0019129:159833-159852 None:intergenic 40.0%
AGAAGACTTAAGAGAGCTGA+TGG + tig0019129:159994-160013 None:intergenic 40.0%
! TTGGAGGGTATACTCTATAC+TGG + tig0019129:160048-160067 None:intergenic 40.0%
AGTATAGAGTATACCCTCCA+AGG - tig0019129:160047-160066 Msa1370590:intron 40.0%
TAATGAAATGGGCCATGAAG+AGG + tig0019129:160105-160124 None:intergenic 40.0%
CTGGAGCCCAATAATGAAAT+GGG + tig0019129:160116-160135 None:intergenic 40.0%
! TCTGGAGCCCAATAATGAAA+TGG + tig0019129:160117-160136 None:intergenic 40.0%
GTACTATCTCTTGACAGCAA+AGG + tig0019129:160166-160185 None:intergenic 40.0%
! ACATGTCACTGATGGTTTTC+AGG - tig0019129:160311-160330 Msa1370590:CDS 40.0%
TTTGACAGTGCTCTCATCAA+TGG + tig0019129:160345-160364 None:intergenic 40.0%
CTTCTCCAACAAATAAGACC+AGG + tig0019129:160392-160411 None:intergenic 40.0%
! CTTATTTGTTGGAGAAGCAC+TGG - tig0019129:160395-160414 Msa1370590:CDS 40.0%
TCAGCTTTCAAAGTTCAACC+AGG - tig0019129:160437-160456 Msa1370590:CDS 40.0%
CTACACCCAGATTGATTGAT+GGG - tig0019129:160587-160606 Msa1370590:CDS 40.0%
CAAGATCCCATCAATCAATC+TGG + tig0019129:160596-160615 None:intergenic 40.0%
! CATTTATTGGTTGGCTAGGA+CGG - tig0019129:160715-160734 Msa1370590:CDS 40.0%
CGGAGACTGTCCATTTAATA+TGG - tig0019129:160735-160754 Msa1370590:CDS 40.0%
ACTTGACGTTGAGTTTCTTG+AGG + tig0019129:161066-161085 None:intergenic 40.0%
!! TTTAAGGAGCGTCTTCACAA+TGG + tig0019129:161089-161108 None:intergenic 40.0%
GAAGACGCTCCTTAAATGAA+AGG - tig0019129:161093-161112 Msa1370590:CDS 40.0%
AGTTTGGCCTACAGAGTAAT+AGG + tig0019129:161217-161236 None:intergenic 40.0%
CTATGACTTTGGATGCAGTT+TGG - tig0019129:161243-161262 Msa1370590:CDS 40.0%
TCTTCCCCCTTTATCTATCT+TGG - tig0019129:161287-161306 Msa1370590:intron 40.0%
AACGCATAAAACCCAAACCC+AGG - tig0019129:156854-156873 Msa1370590:three_prime_UTR 45.0%
AAATCGCGTTACCTGGGTTT+GGG + tig0019129:156868-156887 None:intergenic 45.0%
AAAATCGCGTTACCTGGGTT+TGG + tig0019129:156869-156888 None:intergenic 45.0%
CAAGAGGAGGATTAATCCTC+TGG - tig0019129:156937-156956 Msa1370590:three_prime_UTR 45.0%
TTGAGAGAATAAGCAGCTCC+AGG + tig0019129:157071-157090 None:intergenic 45.0%
TGTTAAGCGTGAATTCTCGC+AGG - tig0019129:157181-157200 Msa1370590:CDS 45.0%
GCAGTTGAAGATTGAAGCTG+AGG - tig0019129:157253-157272 Msa1370590:intron 45.0%
AAATCGAATCCGGTGGTTGT+AGG - tig0019129:157296-157315 Msa1370590:intron 45.0%
ATAGGAAACAGCAGGTGACA+TGG - tig0019129:157324-157343 Msa1370590:intron 45.0%
AAACAGCAGGTGACATGGAA+GGG - tig0019129:157329-157348 Msa1370590:intron 45.0%
GGTTTGAAGAATGACGGTGA+TGG - tig0019129:157401-157420 Msa1370590:intron 45.0%
!! TTGAGGAGTAACGGTGTTGT+TGG - tig0019129:157491-157510 Msa1370590:intron 45.0%
ATAGGCTCCAGAAGAAGGTT+AGG - tig0019129:157573-157592 Msa1370590:CDS 45.0%
GTTAGGAATAAAGGCGGGAA+TGG - tig0019129:157590-157609 Msa1370590:CDS 45.0%
AACAGACGCTGTTGTAACCA+AGG - tig0019129:157619-157638 Msa1370590:CDS 45.0%
! TGTTGATGGGGATGCTGATA+AGG - tig0019129:157727-157746 Msa1370590:intron 45.0%
ATGGGGATGCTGATAAGGAT+AGG - tig0019129:157732-157751 Msa1370590:intron 45.0%
GGATGCTGATAAGGATAGGA+AGG - tig0019129:157736-157755 Msa1370590:intron 45.0%
! GGAACAAGGTGAGAGTATGA+TGG - tig0019129:157775-157794 Msa1370590:CDS 45.0%
TAGTGACAGTGAGGATGAAG+AGG - tig0019129:157817-157836 Msa1370590:CDS 45.0%
! GATGATGAGGATGATGATGC+TGG - tig0019129:157845-157864 Msa1370590:CDS 45.0%
!! GAAAGTCAGGAAAGGTGTTG+AGG - tig0019129:158324-158343 Msa1370590:intron 45.0%
CGATACCGTCACAAGGAAAA+TGG + tig0019129:158485-158504 None:intergenic 45.0%
ATGCTTGTGCTCAGTATTGC+TGG - tig0019129:158655-158674 Msa1370590:CDS 45.0%
TGCTTGTGCTCAGTATTGCT+GGG - tig0019129:158656-158675 Msa1370590:CDS 45.0%
TATTGCTGGGAAGGCCAATT+TGG - tig0019129:158669-158688 Msa1370590:intron 45.0%
GAAGGCCAATTTGGAGAAGT+CGG - tig0019129:158678-158697 Msa1370590:intron 45.0%
CAAGTCCGACTTCTCCAAAT+TGG + tig0019129:158686-158705 None:intergenic 45.0%
CAATTTGGAGAAGTCGGACT+TGG - tig0019129:158684-158703 Msa1370590:intron 45.0%
!! ACCAGCTTTGAAAGCTCTGA+AGG - tig0019129:158708-158727 Msa1370590:intron 45.0%
TCCTTCAGAGCTTTCAAAGC+TGG + tig0019129:158712-158731 None:intergenic 45.0%
AAGGATATCTTCCACAGTGC+AGG - tig0019129:158949-158968 Msa1370590:intron 45.0%
TATCTTCCACAGTGCAGGTT+TGG - tig0019129:158954-158973 Msa1370590:intron 45.0%
TAGAAACCAAACCTGCACTG+TGG + tig0019129:158963-158982 None:intergenic 45.0%
GTCGGCATCAAATGTCGATA+GGG + tig0019129:158993-159012 None:intergenic 45.0%
TAAAAAGCAAGCCCGACGTA+CGG + tig0019129:159274-159293 None:intergenic 45.0%
!!! GGGCTTGCTTTTTAACCTGA+AGG - tig0019129:159280-159299 Msa1370590:CDS 45.0%
ATTCAGGAAGCTTCACGGAA+TGG - tig0019129:159580-159599 Msa1370590:intron 45.0%
TGGTTATCTGTTAGGAACCC+GGG - tig0019129:159723-159742 Msa1370590:intron 45.0%
TAGGAACCCGGGATTAATAC+CGG - tig0019129:159734-159753 Msa1370590:intron 45.0%
! GTTGCTTTCCTATAAGAGCG+TGG + tig0019129:159790-159809 None:intergenic 45.0%
TTCATTCAGTTAGGCGGAGT+AGG + tig0019129:159850-159869 None:intergenic 45.0%
TAAAAGATTGGGAGGGTAGC+TGG + tig0019129:159912-159931 None:intergenic 45.0%
GGTTAATGACGTGGCATTAG+AGG + tig0019129:159973-159992 None:intergenic 45.0%
AGAGCTGATGGTTAATGACG+TGG + tig0019129:159982-160001 None:intergenic 45.0%
!! CTTCTAGAGTATACCCTCCA+AGG - tig0019129:160009-160028 Msa1370590:intron 45.0%
AGAGTATACCCTCCAAGGTT+TGG - tig0019129:160014-160033 Msa1370590:intron 45.0%
GAGTATACCCTCCAAGGTTT+GGG - tig0019129:160015-160034 Msa1370590:intron 45.0%
GAGGATCAGATTGTGGATAC+TGG + tig0019129:160086-160105 None:intergenic 45.0%
CCATGAAGAGGATCAGATTG+TGG + tig0019129:160093-160112 None:intergenic 45.0%
CCACAATCTGATCCTCTTCA+TGG - tig0019129:160090-160109 Msa1370590:intron 45.0%
CTGAAACAGTGATAGAGCTC+TGG + tig0019129:160135-160154 None:intergenic 45.0%
CTACCTTAACAATCCTGACC+TGG - tig0019129:160371-160390 Msa1370590:CDS 45.0%
AGACCAGGTCAGGATTGTTA+AGG + tig0019129:160377-160396 None:intergenic 45.0%
CCAACAAATAAGACCAGGTC+AGG + tig0019129:160387-160406 None:intergenic 45.0%
!! CCTGACCTGGTCTTATTTGT+TGG - tig0019129:160384-160403 Msa1370590:CDS 45.0%
!! TTTGTTGGAGAAGCACTGGT+TGG - tig0019129:160399-160418 Msa1370590:CDS 45.0%
GACGAAGACCCAATTGTAGT+TGG + tig0019129:160494-160513 None:intergenic 45.0%
CCATCAATCAATCTGGGTGT+AGG + tig0019129:160589-160608 None:intergenic 45.0%
CCTACACCCAGATTGATTGA+TGG - tig0019129:160586-160605 Msa1370590:CDS 45.0%
GAGTTTCTTGAGGTCGGTAT+AGG + tig0019129:161056-161075 None:intergenic 45.0%
GACGTTGAGTTTCTTGAGGT+CGG + tig0019129:161062-161081 None:intergenic 45.0%
AAACATTCGTGACAGGTCAC+AGG + tig0019129:161160-161179 None:intergenic 45.0%
ACTCTGTAGGCCAAACTATG+TGG - tig0019129:161220-161239 Msa1370590:CDS 45.0%
! TGTCTTCTAGAGGAGCGATC+TGG - tig0019129:157020-157039 Msa1370590:three_prime_UTR 50.0%
! TCTCGATACACGGTTCTGGT+GGG + tig0019129:157215-157234 None:intergenic 50.0%
! ATCTCGATACACGGTTCTGG+TGG + tig0019129:157216-157235 None:intergenic 50.0%
CTATTCCCACCTACAACCAC+CGG + tig0019129:157308-157327 None:intergenic 50.0%
AGGTGGGAATAGGAAACAGC+AGG - tig0019129:157316-157335 Msa1370590:intron 50.0%
GAAACAGCAGGTGACATGGA+AGG - tig0019129:157328-157347 Msa1370590:intron 50.0%
TGGAAGGGAGATGGATCTGA+TGG - tig0019129:157344-157363 Msa1370590:intron 50.0%
GGAAGGGAGATGGATCTGAT+GGG - tig0019129:157345-157364 Msa1370590:intron 50.0%
! AAGAAGAATGCCAGTGCTGG+TGG - tig0019129:157368-157387 Msa1370590:intron 50.0%
GGCGGTGGTTTGAAGAATGA+CGG - tig0019129:157395-157414 Msa1370590:intron 50.0%
AACCAAGGCTGAGCCGAAAA+AGG - tig0019129:157634-157653 Msa1370590:intron 50.0%
!!! TACCTTTTTCGGCTCAGCCT+TGG + tig0019129:157639-157658 None:intergenic 50.0%
!! TCAGGAAAGGTGTTGAGGTC+AGG - tig0019129:158329-158348 Msa1370590:intron 50.0%
!! CAGGAAAGGTGTTGAGGTCA+GGG - tig0019129:158330-158349 Msa1370590:intron 50.0%
!! AGGAAAGGTGTTGAGGTCAG+GGG - tig0019129:158331-158350 Msa1370590:intron 50.0%
! GTTGAGGTCAGGGGCATATA+TGG - tig0019129:158340-158359 Msa1370590:intron 50.0%
TCCTTGTGACGGTATCGTCT+TGG - tig0019129:158488-158507 Msa1370590:intron 50.0%
CCTTGTGACGGTATCGTCTT+GGG - tig0019129:158489-158508 Msa1370590:intron 50.0%
TGTGCTCAGTATTGCTGGGA+AGG - tig0019129:158660-158679 Msa1370590:CDS 50.0%
!! TCTGTGTCACTTGTAGGCTG+AGG - tig0019129:158859-158878 Msa1370590:intron 50.0%
TCAGTGGCTGCAAGTCTTGA+AGG - tig0019129:158905-158924 Msa1370590:intron 50.0%
GGTCGGCATCAAATGTCGAT+AGG + tig0019129:158994-159013 None:intergenic 50.0%
! GCTTCTTTTGCCACAACAGC+AGG + tig0019129:159559-159578 None:intergenic 50.0%
GGAAGCTTCACGGAATGGTT+CGG - tig0019129:159585-159604 Msa1370590:intron 50.0%
! ATTCCTCTCTGAAGGAGCCT+TGG + tig0019129:159825-159844 None:intergenic 50.0%
TGGGTGTAGGAGATGTGGAA+AGG + tig0019129:160576-160595 None:intergenic 50.0%
CAATCTGGGTGTAGGAGATG+TGG + tig0019129:160581-160600 None:intergenic 50.0%
GGCGAAATACATGGGTGAGA+TGG + tig0019129:160831-160850 None:intergenic 50.0%
TGGAGCTCCAGTCATGTTTG+TGG - tig0019129:161018-161037 Msa1370590:CDS 50.0%
GGAGCTCCAGTCATGTTTGT+GGG - tig0019129:161019-161038 Msa1370590:CDS 50.0%
CCAGTCATGTTTGTGGGATG+CGG - tig0019129:161025-161044 Msa1370590:CDS 50.0%
TCTAGAGGAGCGATCTGGTG+CGG - tig0019129:157025-157044 Msa1370590:three_prime_UTR 55.0%
TGAAGCTGAGGCTCGTTCTG+AGG - tig0019129:157265-157284 Msa1370590:intron 55.0%
TCGAATCCGGTGGTTGTAGG+TGG - tig0019129:157299-157318 Msa1370590:intron 55.0%
CGAATCCGGTGGTTGTAGGT+GGG - tig0019129:157300-157319 Msa1370590:intron 55.0%
CGGTGGTTGTAGGTGGGAAT+AGG - tig0019129:157306-157325 Msa1370590:intron 55.0%
CAGGTGACATGGAAGGGAGA+TGG - tig0019129:157335-157354 Msa1370590:intron 55.0%
GGGAAGAAGAATGCCAGTGC+TGG - tig0019129:157365-157384 Msa1370590:intron 55.0%
!! AAGAATGCCAGTGCTGGTGG+TGG - tig0019129:157371-157390 Msa1370590:intron 55.0%
CCCAAGACGATACCGTCACA+AGG + tig0019129:158492-158511 None:intergenic 55.0%
CAGGAGCTGTTGAGCAGTTG+CGG - tig0019129:159397-159416 Msa1370590:intron 55.0%
GACTCATGCACGCAGACTTC+AGG - tig0019129:159419-159438 Msa1370590:intron 55.0%
GTTGTGCTAGTCGACACAGC+TGG - tig0019129:159610-159629 Msa1370590:intron 55.0%
ACCCTCCAAGGTTTGCGATG+TGG - tig0019129:160021-160040 Msa1370590:intron 55.0%
CCCACATCGCAAACCTTGGA+GGG + tig0019129:160025-160044 None:intergenic 55.0%
CCCTCCAAGGTTTGCGATGT+GGG - tig0019129:160022-160041 Msa1370590:intron 55.0%
! ACCCTCCAAGGTTTGGGATG+TGG - tig0019129:160059-160078 Msa1370590:intron 55.0%
CCCACATCCCAAACCTTGGA+GGG + tig0019129:160063-160082 None:intergenic 55.0%
! CCCTCCAAGGTTTGGGATGT+GGG - tig0019129:160060-160079 Msa1370590:intron 55.0%
GGGAAGGGGGCGAAATACAT+GGG + tig0019129:160839-160858 None:intergenic 55.0%
AGGGAAGGGGGCGAAATACA+TGG + tig0019129:160840-160859 None:intergenic 55.0%
GGTGGGAGCTGCACTTTCAA+TGG - tig0019129:160985-161004 Msa1370590:CDS 55.0%
CCGCATCCCACAAACATGAC+TGG + tig0019129:161028-161047 None:intergenic 55.0%
!! AATGCCAGTGCTGGTGGTGG+TGG - tig0019129:157374-157393 Msa1370590:intron 60.0%
GGCGGCAATGGAAGATGCAC+TGG - tig0019129:159074-159093 Msa1370590:CDS 60.0%
CGACACAGCTGGTCGTATGC+AGG - tig0019129:159621-159640 Msa1370590:intron 60.0%
GCAACAGACCACCTGAGCCA+AGG - tig0019129:159805-159824 Msa1370590:intron 60.0%
TGAAGGAGCCTTGGCTCAGG+TGG + tig0019129:159816-159835 None:intergenic 60.0%
! CTCTGAAGGAGCCTTGGCTC+AGG + tig0019129:159819-159838 None:intergenic 60.0%
GAGCCAAGGCTCCTTCAGAG+AGG - tig0019129:159819-159838 Msa1370590:intron 60.0%
GCCCACATCGCAAACCTTGG+AGG + tig0019129:160026-160045 None:intergenic 60.0%
CTGGCCCACATCGCAAACCT+TGG + tig0019129:160029-160048 None:intergenic 60.0%
GCCCACATCCCAAACCTTGG+AGG + tig0019129:160064-160083 None:intergenic 60.0%
CTGGCCCACATCCCAAACCT+TGG + tig0019129:160067-160086 None:intergenic 60.0%
!! GCCAGTGCTGGTGGTGGTGG+CGG - tig0019129:157377-157396 Msa1370590:intron 70.0%
ACCGCCACCACCACCAGCAC+TGG + tig0019129:157381-157400 None:intergenic 70.0%
!! AGTGCTGGTGGTGGTGGCGG+TGG - tig0019129:157380-157399 Msa1370590:intron 70.0%
Chromosome Type Strat End Strand Name
tig0019129 gene 156745 161461 156745 ID=Msa1370590;Name=Msa1370590
tig0019129 mRNA 156745 161461 156745 ID=Msa1370590-mRNA-1;Parent=Msa1370590;Name=Msa1370590-mRNA-1;_AED=0.06;_eAED=0.06;_QI=136|1|1|1|0.88|0.8|10|350|636
tig0019129 exon 156745 157220 156745 ID=Msa1370590-mRNA-1:exon:1730;Parent=Msa1370590-mRNA-1
tig0019129 exon 157561 157644 157561 ID=Msa1370590-mRNA-1:exon:1729;Parent=Msa1370590-mRNA-1
tig0019129 exon 157748 157873 157748 ID=Msa1370590-mRNA-1:exon:1728;Parent=Msa1370590-mRNA-1
tig0019129 exon 158564 158683 158564 ID=Msa1370590-mRNA-1:exon:1727;Parent=Msa1370590-mRNA-1
tig0019129 exon 158766 158873 158766 ID=Msa1370590-mRNA-1:exon:1726;Parent=Msa1370590-mRNA-1
tig0019129 exon 158979 159131 158979 ID=Msa1370590-mRNA-1:exon:1725;Parent=Msa1370590-mRNA-1
tig0019129 exon 159236 159331 159236 ID=Msa1370590-mRNA-1:exon:1724;Parent=Msa1370590-mRNA-1
tig0019129 exon 159453 159537 159453 ID=Msa1370590-mRNA-1:exon:1723;Parent=Msa1370590-mRNA-1
tig0019129 exon 160282 161299 160282 ID=Msa1370590-mRNA-1:exon:1722;Parent=Msa1370590-mRNA-1
tig0019129 exon 161331 161461 161331 ID=Msa1370590-mRNA-1:exon:1721;Parent=Msa1370590-mRNA-1
tig0019129 five_prime_UTR 161331 161461 161331 ID=Msa1370590-mRNA-1:five_prime_utr;Parent=Msa1370590-mRNA-1
tig0019129 five_prime_UTR 161295 161299 161295 ID=Msa1370590-mRNA-1:five_prime_utr;Parent=Msa1370590-mRNA-1
tig0019129 CDS 160282 161294 160282 ID=Msa1370590-mRNA-1:cds;Parent=Msa1370590-mRNA-1
tig0019129 CDS 159453 159537 159453 ID=Msa1370590-mRNA-1:cds;Parent=Msa1370590-mRNA-1
tig0019129 CDS 159236 159331 159236 ID=Msa1370590-mRNA-1:cds;Parent=Msa1370590-mRNA-1
tig0019129 CDS 158979 159131 158979 ID=Msa1370590-mRNA-1:cds;Parent=Msa1370590-mRNA-1
tig0019129 CDS 158766 158873 158766 ID=Msa1370590-mRNA-1:cds;Parent=Msa1370590-mRNA-1
tig0019129 CDS 158564 158683 158564 ID=Msa1370590-mRNA-1:cds;Parent=Msa1370590-mRNA-1
tig0019129 CDS 157748 157873 157748 ID=Msa1370590-mRNA-1:cds;Parent=Msa1370590-mRNA-1
tig0019129 CDS 157561 157644 157561 ID=Msa1370590-mRNA-1:cds;Parent=Msa1370590-mRNA-1
tig0019129 CDS 157095 157220 157095 ID=Msa1370590-mRNA-1:cds;Parent=Msa1370590-mRNA-1
tig0019129 three_prime_UTR 156745 157094 156745 ID=Msa1370590-mRNA-1:three_prime_utr;Parent=Msa1370590-mRNA-1
Gene Sequence

>Msa1370590

ATGTTAGAGCAGTTACTGATTTTCACAAGAGGAGGATTAATCCTCTGGTCATGCAATGAAATTGGCAACGCTTTGAAAGGATCACCGATCGATACATTGATTCGATCTTGTCTTCTAGAGGAGCGATCTGGTGCGGCATCTTACAATTACGATGCACCTGGAGCTGCTTATTCTCTCAAATGGACTTTTCACAATGATCTAGGTCTTGTTTTCGTTGCTGTTTATCAGAGAATTCTGCATCTGCTCTATGTGGATGATTTGCTTGCTGCTGTTAAGCGTGAATTCTCGCAGGTTTATGATCCCACCAGAACCGTGTATCGAGATTTTGATCAGATTTTTAAGCAGTTGAAGATTGAAGCTGAGGCTCGTTCTGAGGATTTGAAGAAATCGAATCCGGTGGTTGTAGGTGGGAATAGGAAACAGCAGGTGACATGGAAGGGAGATGGATCTGATGGGAAGAAGAATGCCAGTGCTGGTGGTGGTGGCGGTGGTTTGAAGAATGACGGTGATGGGAAAAATGGGAAGAAGAATTCTGATAATGACCGTTCTGTTATTGTGAATAACGGTAACGGTTATAATTTGAGGAGTAACGGTGTTGTTGGTAATGTTAGTGTAAATGGTAAAGAGAATGATAGTGTAAACAATGGAGCTTTTGATGTAAATAGGCTCCAGAAGAAGGTTAGGAATAAAGGCGGGAATGGAAAGAAAACAGACGCTGTTGTAACCAAGGCTGAGCCGAAAAAGGTAGTTAAGAAAAATAGGGTTTGGGATGACAAACCCGTTGAAACTAAGTTAGATTTTACGGATCATGTTGATGTTGATGGGGATGCTGATAAGGATAGGAAGGTTGATTATTTGGCTAAGGAACAAGGTGAGAGTATGATGGATAAAGATGAGATTTTTAGTAGTGACAGTGAGGATGAAGAGGATGATGATGATGAGGATGATGATGCTGGGAAGAAGAGCAAGCCTGATGCTAAAAAGAAGGGTTGGTTTTCATCTATGTTCCAGAGTATTGCTGGGAAGGCCAATTTGGAGAAGTCGGACTTGGAACCAGCTTTGAAAGCTCTGAAGGATAGACTCATGACCAAGAATGTGGCTGAGGAAATAGCTGAGAAGCTATGTGAATCAGTGGCTGCAAGTCTTGAAGGCAAAAAACTGGCTTCATTTACAAGGATATCTTCCACAGTGCAGGCGGCAATGGAAGATGCACTGGTTCGTATTTTAACTCCTAGGCGTTCTATTGACATATTGAGGGATGTTCATGCTGCAAAAGAGCAAAGGAAACCATATGTTGTTGTATTTGTTGGAGTTAATGGAGTTGGAAAATCTACTAATCTTGCTAAGGTTGCTTACTGGCTTCAGCAACACAATGTTAATGTCATGATGGCTGCTTGTGATACATTTCGATCAGGAGCTGTTGAGCAGTTGCGGACTCATGCACGCAGACTTCAGATCCCTATATTTGAGAAGGGTTATGAAAAAGATCCTGCTGTTGTGGCAAAAGAAGCAATTCAGGAAGCTTCACGGAATGGTTCGGATGTTGTGCTAGTCGACACAGCTGGTCGTATGCAGGATAATGAACCATTGATGAGAGCACTGTCAAAGCTGATCTACCTTAACAATCCTGACCTGGTCTTATTTGTTGGAGAAGCACTGGTTGGCAATGATGCAGTTGATCAGCTTTCAAAGTTCAACCAGAAACTGGCTGACCTTTCCACATCTCCTACACCCAGATTGATTGATGGGATCTTGCTCACAAAGTTCGACACTATTGATGATAAGGTGGGAGCTGCACTTTCAATGGTTTACATATCTGGAGCTCCAGTCATGTTTGTGGGATGCGGACAGTCCTATACCGACCTCAAGAAACTCAACGTCAAGTCCATTGTGAAGACGCTCCTTAAATGA

Protein sequence

>Msa1370590

MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYSLKWTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYRDFDQIFKQLKIEAEARSEDLKKSNPVVVGGNRKQQVTWKGDGSDGKKNASAGGGGGGLKNDGDGKNGKKNSDNDRSVIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVNRLQKKVRNKGGNGKKTDAVVTKAEPKKVVKKNRVWDDKPVETKLDFTDHVDVDGDADKDRKVDYLAKEQGESMMDKDEIFSSDSEDEEDDDDEDDDAGKKSKPDAKKKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK*