AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1384100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384100 MtrunA17_Chr4g0073891 97.642 636 10 2 1 636 1 631 0.0 1261
Msa1384100 MtrunA17_Chr4g0003161 30.962 239 147 3 397 635 75 295 8.53e-31 126
Msa1384100 MtrunA17_Chr7g0266491 28.082 292 192 4 332 623 75 348 6.48e-30 124
Msa1384100 MtrunA17_Chr2g0333241 30.544 239 148 3 397 635 75 295 1.13e-29 122
Msa1384100 MtrunA17_Chr8g0350161 29.730 296 179 7 348 635 94 368 3.75e-27 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384100 AT4G30600.2 75.307 652 127 14 1 636 1 634 0.0 887
Msa1384100 AT4G30600.1 75.307 652 127 14 1 636 1 634 0.0 887
Msa1384100 AT1G48900.2 26.797 306 206 3 330 635 8 295 4.77e-32 129
Msa1384100 AT1G48900.1 26.797 306 206 3 330 635 8 295 5.85e-32 130
Msa1384100 AT5G03940.1 28.571 294 192 4 330 623 83 358 7.92e-32 130
Msa1384100 AT1G15310.1 28.727 275 178 3 361 635 39 295 1.38e-31 129
Msa1384100 AT2G45770.1 29.667 300 180 8 344 635 89 365 4.12e-27 114
Msa1384100 AT5G49500.1 24.351 308 213 4 330 635 8 297 2.47e-23 104
Msa1384100 AT5G49500.2 29.480 173 111 2 463 635 14 175 6.12e-20 92.8

Find 160 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTTTCATCCTTTCATTTA+AGG 0.135782 tig0020633:+112912 None:intergenic
GCAGTTTGGTTTGTTTATTT+TGG 0.181230 tig0020633:-112757 Msa1384100:three_prime_UTR
GGATAGGAAGGTTGATTATT+TGG 0.186314 tig0020633:-116266 Msa1384100:CDS
CTTTCAATGGTTTACATATC+TGG 0.196127 tig0020633:-113016 Msa1384100:CDS
TGATTATGCAGGTTGCTTAC+TGG 0.239203 tig0020633:-114692 Msa1384100:intron
GTTGGTAATGTTAGTGTAAA+TGG 0.240516 tig0020633:-116505 Msa1384100:CDS
CATAACCCTTCTCAAATATA+GGG 0.264100 tig0020633:+114489 None:intergenic
TCATAACCCTTCTCAAATAT+AGG 0.269160 tig0020633:+114488 None:intergenic
CTCTGGTCATGCAATGAAAT+TGG 0.273870 tig0020633:-117060 Msa1384100:CDS
GTTGTATTTGTTGGAGTTAA+TGG 0.282982 tig0020633:-114837 Msa1384100:CDS
CTTTATTCCTAACCTTCTTC+TGG 0.284805 tig0020633:+116434 None:intergenic
TATTGCTGGGAAGGCCAATT+TGG 0.285068 tig0020633:-115345 Msa1384100:CDS
AGTTTGGCCTACAGAGTAAT+AGG 0.294677 tig0020633:+112800 None:intergenic
CCATATGTTGTTGTATTTGT+TGG 0.324829 tig0020633:-114846 Msa1384100:CDS
CCTGACCTGGTCTTATTTGT+TGG 0.326012 tig0020633:-113630 Msa1384100:CDS
CAAGTCCGACTTCTCCAAAT+TGG 0.330709 tig0020633:+115331 None:intergenic
AAATCGCGTTACCTGGGTTT+GGG 0.339392 tig0020633:+117149 None:intergenic
AACCAAGGCTGAGCCGAAAA+AGG 0.357649 tig0020633:-116380 Msa1384100:CDS
GACTCATGCACGCAGACTTC+AGG 0.360707 tig0020633:-114595 Msa1384100:intron
ATGCTTGTGCTCAGTATTGC+TGG 0.365590 tig0020633:-115359 Msa1384100:intron
AAAGTCATAGCCACATAGTT+TGG 0.375619 tig0020633:+112784 None:intergenic
AAAATCGCGTTACCTGGGTT+TGG 0.383736 tig0020633:+117148 None:intergenic
CAAGATCCCATCAATCAATC+TGG 0.383740 tig0020633:+113421 None:intergenic
AAACTATGTGGCTATGACTT+TGG 0.384030 tig0020633:-112782 Msa1384100:three_prime_UTR
GAGTTTCTTGAGGTCGGTAT+AGG 0.387081 tig0020633:+112961 None:intergenic
CAGAAGAAGGTTAGGAATAA+AGG 0.388438 tig0020633:-116433 Msa1384100:CDS
ACGGATCATGTTGATGTTGA+TGG 0.394256 tig0020633:-116301 Msa1384100:CDS
GGTGGGAGCTGCACTTTCAA+TGG 0.401497 tig0020633:-113029 Msa1384100:CDS
CGGTGGTTGTAGGTGGGAAT+AGG 0.404012 tig0020633:-116708 Msa1384100:CDS
TTTGACAGTGCTCTCATCAA+TGG 0.412182 tig0020633:+113672 None:intergenic
ATAAATACATACCACATTCT+TGG 0.414415 tig0020633:+115271 None:intergenic
TCCTTCAGAGCTTTCAAAGC+TGG 0.420133 tig0020633:+115305 None:intergenic
TTGAGGAGTAACGGTGTTGT+TGG 0.422921 tig0020633:-116523 Msa1384100:CDS
CCAACAAATACAACAACATA+TGG 0.423685 tig0020633:+114846 None:intergenic
CTATGACTTTGGATGCAGTT+TGG 0.424172 tig0020633:-112771 Msa1384100:three_prime_UTR
GCCAGTGCTGGTGGTGGTGG+CGG 0.424543 tig0020633:-116637 Msa1384100:CDS
TTATTATTTGAGATTTGGTT+AGG 0.425421 tig0020633:+117250 None:intergenic
TGTGGCAAAAGAAGCAATTC+AGG 0.429961 tig0020633:-114450 Msa1384100:CDS
AAATCTAACTTAGTTTCAAC+GGG 0.430928 tig0020633:+116325 None:intergenic
TAGTGACAGTGAGGATGAAG+AGG 0.435461 tig0020633:-116197 Msa1384100:CDS
CAATTTGGAGAAGTCGGACT+TGG 0.441725 tig0020633:-115330 Msa1384100:CDS
AAATCGAATCCGGTGGTTGT+AGG 0.450153 tig0020633:-116718 Msa1384100:CDS
GTTCGACACTATTGATGATA+AGG 0.450965 tig0020633:-113390 Msa1384100:intron
AATGCCAGTGCTGGTGGTGG+TGG 0.452714 tig0020633:-116640 Msa1384100:CDS
ACCGCCACCACCACCAGCAC+TGG 0.454509 tig0020633:+116636 None:intergenic
CGTTCTGTTATTGTGAATAA+CGG 0.459586 tig0020633:-116559 Msa1384100:CDS
TGTTGATGGGGATGCTGATA+AGG 0.462630 tig0020633:-116287 Msa1384100:CDS
GGAAGCTTCACGGAATGGTT+CGG 0.463640 tig0020633:-114429 Msa1384100:CDS
ATAGGCTCCAGAAGAAGGTT+AGG 0.465195 tig0020633:-116441 Msa1384100:CDS
AGTGCTGGTGGTGGTGGCGG+TGG 0.465276 tig0020633:-116634 Msa1384100:CDS
TCAGTGGCTGCAAGTCTTGA+AGG 0.467409 tig0020633:-115109 Msa1384100:CDS
GGCGTTCTATTGACATATTG+AGG 0.470946 tig0020633:-114899 Msa1384100:CDS
CAAGAGGAGGATTAATCCTC+TGG 0.471238 tig0020633:-117077 Msa1384100:CDS
CCTACACCCAGATTGATTGA+TGG 0.472241 tig0020633:-113428 Msa1384100:CDS
CGGATCATGTTGATGTTGAT+GGG 0.473173 tig0020633:-116300 Msa1384100:CDS
GAAGGTTGATTATTTGGCTA+AGG 0.473509 tig0020633:-116260 Msa1384100:CDS
TGGAGCTCCAGTCATGTTTG+TGG 0.474210 tig0020633:-112996 Msa1384100:CDS
CCAACAAATAAGACCAGGTC+AGG 0.474859 tig0020633:+113630 None:intergenic
TTTGTTGGAGTTAATGGAGT+TGG 0.477015 tig0020633:-114831 Msa1384100:CDS
TGGAAGGGAGATGGATCTGA+TGG 0.483093 tig0020633:-116670 Msa1384100:CDS
AAGGATATCTTCCACAGTGC+AGG 0.486091 tig0020633:-115065 Msa1384100:intron
AAAATCTCGATACACGGTTC+TGG 0.486570 tig0020633:+116798 None:intergenic
AAAATCTAACTTAGTTTCAA+CGG 0.490122 tig0020633:+116324 None:intergenic
GAGCTGCTTATTCTCTCAAA+TGG 0.492519 tig0020633:-116942 Msa1384100:CDS
ATGGGGATGCTGATAAGGAT+AGG 0.493111 tig0020633:-116282 Msa1384100:CDS
CTTATTTGTTGGAGAAGCAC+TGG 0.493495 tig0020633:-113619 Msa1384100:CDS
GCTTGTGATACATTTCGATC+AGG 0.496091 tig0020633:-114636 Msa1384100:CDS
GTTAGGAATAAAGGCGGGAA+TGG 0.496788 tig0020633:-116424 Msa1384100:CDS
TGTAAATAGGCTCCAGAAGA+AGG 0.499134 tig0020633:-116446 Msa1384100:CDS
ATCTCGATACACGGTTCTGG+TGG 0.501240 tig0020633:+116801 None:intergenic
GATGATGAGGATGATGATGC+TGG 0.501399 tig0020633:-116169 Msa1384100:CDS
TGTTAATCCTATTACTCTGT+AGG 0.507822 tig0020633:-112807 Msa1384100:three_prime_UTR
GCGTTCTATTGACATATTGA+GGG 0.507989 tig0020633:-114898 Msa1384100:CDS
AGACCAGGTCAGGATTGTTA+AGG 0.512658 tig0020633:+113640 None:intergenic
CTATTCCCACCTACAACCAC+CGG 0.515311 tig0020633:+116709 None:intergenic
CCAGTCATGTTTGTGGGATG+CGG 0.515363 tig0020633:-112989 Msa1384100:CDS
TCAGATCCCTATATTTGAGA+AGG 0.520704 tig0020633:-114495 Msa1384100:intron
CTACACCCAGATTGATTGAT+GGG 0.521118 tig0020633:-113427 Msa1384100:CDS
ACGGTAACGGTTATAATTTG+AGG 0.521482 tig0020633:-116540 Msa1384100:CDS
CAGGAGCTGTTGAGCAGTTG+CGG 0.524608 tig0020633:-114617 Msa1384100:CDS
GAAATTGGCAACGCTTTGAA+AGG 0.527215 tig0020633:-117045 Msa1384100:CDS
GGAGCTCCAGTCATGTTTGT+GGG 0.528002 tig0020633:-112995 Msa1384100:CDS
CAGATCCCTATATTTGAGAA+GGG 0.528857 tig0020633:-114494 Msa1384100:CDS
GACGTTGAGTTTCTTGAGGT+CGG 0.531116 tig0020633:+112955 None:intergenic
AAGCAATTCAGGAAGCTTCA+CGG 0.533244 tig0020633:-114439 Msa1384100:CDS
GGCGGCAATGGAAGATGCAC+TGG 0.533895 tig0020633:-114940 Msa1384100:CDS
CGACACAGCTGGTCGTATGC+AGG 0.535402 tig0020633:-114393 Msa1384100:intron
ATTCAGGAAGCTTCACGGAA+TGG 0.540152 tig0020633:-114434 Msa1384100:CDS
GGAACAAGGTGAGAGTATGA+TGG 0.543614 tig0020633:-116239 Msa1384100:CDS
TCGAATCCGGTGGTTGTAGG+TGG 0.545919 tig0020633:-116715 Msa1384100:CDS
TGTGCTCAGTATTGCTGGGA+AGG 0.545968 tig0020633:-115354 Msa1384100:intron
GATTCGATCTTGTCTTCTAG+AGG 0.546611 tig0020633:-117004 Msa1384100:CDS
TGTCTTCTAGAGGAGCGATC+TGG 0.547527 tig0020633:-116994 Msa1384100:CDS
GGATTTGAAGAAATCGAATC+CGG 0.550640 tig0020633:-116728 Msa1384100:CDS
CAATCTGGGTGTAGGAGATG+TGG 0.553386 tig0020633:+113436 None:intergenic
AAAATCTACTAATCTTGCTA+AGG 0.553829 tig0020633:-114808 Msa1384100:intron
CAGGTGACATGGAAGGGAGA+TGG 0.559417 tig0020633:-116679 Msa1384100:CDS
CCGCATCCCACAAACATGAC+TGG 0.559796 tig0020633:+112989 None:intergenic
ACCAGCTTTGAAAGCTCTGA+AGG 0.559926 tig0020633:-115306 Msa1384100:CDS
TTGAGAGAATAAGCAGCTCC+AGG 0.560375 tig0020633:+116946 None:intergenic
AAACAGCAGGTGACATGGAA+GGG 0.561061 tig0020633:-116685 Msa1384100:CDS
GATTATTTGGCTAAGGAACA+AGG 0.566749 tig0020633:-116253 Msa1384100:CDS
GTTATTGTGAATAACGGTAA+CGG 0.570694 tig0020633:-116553 Msa1384100:CDS
CAATTTCATTGCATGACCAG+AGG 0.575171 tig0020633:+117061 None:intergenic
GGATGCTGATAAGGATAGGA+AGG 0.575386 tig0020633:-116278 Msa1384100:CDS
GCAGTTGAAGATTGAAGCTG+AGG 0.579144 tig0020633:-116761 Msa1384100:CDS
AAGATCCCATCAATCAATCT+GGG 0.579799 tig0020633:+113422 None:intergenic
CCATCAATCAATCTGGGTGT+AGG 0.581937 tig0020633:+113428 None:intergenic
GAAGACGCTCCTTAAATGAA+AGG 0.584086 tig0020633:-112921 Msa1384100:exon
TGAAGCTGAGGCTCGTTCTG+AGG 0.584141 tig0020633:-116749 Msa1384100:CDS
ACTTGACGTTGAGTTTCTTG+AGG 0.584980 tig0020633:+112951 None:intergenic
GAAACAGCAGGTGACATGGA+AGG 0.585391 tig0020633:-116686 Msa1384100:CDS
CAATCTGAATAAATTATATG+TGG 0.586190 tig0020633:-112597 Msa1384100:three_prime_UTR
GGGAAGAAGAATGCCAGTGC+TGG 0.586484 tig0020633:-116649 Msa1384100:CDS
CTGATCAAAATCTCGATACA+CGG 0.587720 tig0020633:+116792 None:intergenic
CTACCTTAACAATCCTGACC+TGG 0.587728 tig0020633:-113643 Msa1384100:CDS
TTTGTTGGAGAAGCACTGGT+TGG 0.588986 tig0020633:-113615 Msa1384100:CDS
GGTTATAATTTGAGGAGTAA+CGG 0.590987 tig0020633:-116532 Msa1384100:CDS
ATAGGAAACAGCAGGTGACA+TGG 0.591167 tig0020633:-116690 Msa1384100:CDS
GTTTGAAGAATGACGGTGAT+GGG 0.596520 tig0020633:-116612 Msa1384100:CDS
TGTTAAGCGTGAATTCTCGC+AGG 0.597191 tig0020633:-116833 Msa1384100:CDS
TTTAAGGAGCGTCTTCACAA+TGG 0.598414 tig0020633:+112928 None:intergenic
TGCTTGTGCTCAGTATTGCT+GGG 0.598645 tig0020633:-115358 Msa1384100:intron
CGAATCCGGTGGTTGTAGGT+GGG 0.598863 tig0020633:-116714 Msa1384100:CDS
AGGTGGGAATAGGAAACAGC+AGG 0.600879 tig0020633:-116698 Msa1384100:CDS
AAACATTCGTGACAGGTCAC+AGG 0.602301 tig0020633:+112857 None:intergenic
AATTCTGCATCTGCTCTATG+TGG 0.603688 tig0020633:-116872 Msa1384100:CDS
AAACTGAAAACATTCGTGAC+AGG 0.605467 tig0020633:+112850 None:intergenic
TGAAGAGGATGATGATGATG+AGG 0.607270 tig0020633:-116182 Msa1384100:CDS
TTCATGCTGCAAAAGAGCAA+AGG 0.608654 tig0020633:-114872 Msa1384100:CDS
ATGATGAGGATGATGATGCT+GGG 0.610615 tig0020633:-116168 Msa1384100:CDS
ACACAATGTTAATGTCATGA+TGG 0.611925 tig0020633:-114661 Msa1384100:CDS
GAGAATGATAGTGTAAACAA+TGG 0.612652 tig0020633:-116478 Msa1384100:CDS
ACTCTGTAGGCCAAACTATG+TGG 0.615418 tig0020633:-112794 Msa1384100:three_prime_UTR
GATCGAATCAATGTATCGAT+CGG 0.617091 tig0020633:+117018 None:intergenic
CTTCTCCAACAAATAAGACC+AGG 0.622372 tig0020633:+113625 None:intergenic
GTTGTGCTAGTCGACACAGC+TGG 0.625758 tig0020633:-114404 Msa1384100:CDS
TCTTACAATTACGATGCACC+TGG 0.626789 tig0020633:-116964 Msa1384100:CDS
TCTCGATACACGGTTCTGGT+GGG 0.628791 tig0020633:+116802 None:intergenic
AACAGACGCTGTTGTAACCA+AGG 0.629920 tig0020633:-116395 Msa1384100:CDS
AAGAATGCCAGTGCTGGTGG+TGG 0.631319 tig0020633:-116643 Msa1384100:CDS
GGAAGGGAGATGGATCTGAT+GGG 0.633548 tig0020633:-116669 Msa1384100:CDS
GAAGGCCAATTTGGAGAAGT+CGG 0.633774 tig0020633:-115336 Msa1384100:CDS
GGTTTGAAGAATGACGGTGA+TGG 0.634038 tig0020633:-116613 Msa1384100:CDS
AGAAGGTTAGGAATAAAGGC+GGG 0.636662 tig0020633:-116429 Msa1384100:CDS
CGTTATTCACAATAACAGAA+CGG 0.639458 tig0020633:+116560 None:intergenic
GGCGGTGGTTTGAAGAATGA+CGG 0.640321 tig0020633:-116619 Msa1384100:CDS
TGAGAAGCTATGTGAATCAG+TGG 0.640944 tig0020633:-115125 Msa1384100:CDS
TCAGCTTTCAAAGTTCAACC+AGG 0.642481 tig0020633:-113577 Msa1384100:intron
AAGAAGAATGCCAGTGCTGG+TGG 0.643037 tig0020633:-116646 Msa1384100:CDS
TGGGTGTAGGAGATGTGGAA+AGG 0.654736 tig0020633:+113441 None:intergenic
TAGACTCATGACCAAGAATG+TGG 0.655583 tig0020633:-115282 Msa1384100:intron
GGATCATGTTGATGTTGATG+GGG 0.663445 tig0020633:-116299 Msa1384100:CDS
TTTGAAGAAATCGAATCCGG+TGG 0.670497 tig0020633:-116725 Msa1384100:CDS
TCTAGAGGAGCGATCTGGTG+CGG 0.676914 tig0020633:-116989 Msa1384100:CDS
AAGAAGGTTAGGAATAAAGG+CGG 0.679488 tig0020633:-116430 Msa1384100:CDS
AACGCATAAAACCCAAACCC+AGG 0.680999 tig0020633:-117160 Msa1384100:intron
AATATGTCAATAGAACGCCT+AGG 0.693947 tig0020633:+114903 None:intergenic
ACAGAGTAATAGGATTAACA+AGG 0.704852 tig0020633:+112810 None:intergenic
TAGAAACCAAACCTGCACTG+TGG 0.728001 tig0020633:+115054 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATTGTATATAAATAAA+AGG + tig0020633:114845-114864 None:intergenic 10.0%
!!! AAGTTTTATTATTTGAGATT+TGG + tig0020633:112602-112621 None:intergenic 15.0%
!!! TTTTGAATTTGTTTGTAATT+AGG - tig0020633:112715-112734 Msa1384100:three_prime_UTR 15.0%
!!! TATTTAACTTGTAATGATAT+TGG - tig0020633:114122-114141 Msa1384100:intron 15.0%
!! ATAAATTAAATTGTTACTCT+TGG - tig0020633:114217-114236 Msa1384100:intron 15.0%
!! ATTGTATATAAATAAAAGGT+CGG + tig0020633:114841-114860 None:intergenic 15.0%
!! TTAATATATCCCAATAAAAA+TGG - tig0020633:117145-117164 Msa1384100:intron 15.0%
!!! TTATTATTTGAGATTTGGTT+AGG + tig0020633:112597-112616 None:intergenic 20.0%
!!! TTTTTCTTAACTACCTTTTT+CGG + tig0020633:113480-113499 None:intergenic 20.0%
!! AAAAGGTAGTTAAGAAAAAT+AGG - tig0020633:113481-113500 Msa1384100:intron 20.0%
!! AAAGGTAGTTAAGAAAAATA+GGG - tig0020633:113482-113501 Msa1384100:intron 20.0%
!! AAAATCTAACTTAGTTTCAA+CGG + tig0020633:113523-113542 None:intergenic 20.0%
!!! TGAAACTAAGTTAGATTTTA+CGG - tig0020633:113524-113543 Msa1384100:intron 20.0%
!!! AAACAATAAAAGTATTGTCA+AGG + tig0020633:113972-113991 None:intergenic 20.0%
!!! CAAAAGTTTATTGGTTTTAT+GGG - tig0020633:115498-115517 Msa1384100:intron 20.0%
!!! AAAAGTTTATTGGTTTTATG+GGG - tig0020633:115499-115518 Msa1384100:intron 20.0%
!!! AATGAACCTTTTATGTTTAT+TGG - tig0020633:116020-116039 Msa1384100:intron 20.0%
!! TCAATTCCAATAAACATAAA+AGG + tig0020633:116029-116048 None:intergenic 20.0%
!!! TTTTATGTTTATTGGAATTG+AGG - tig0020633:116028-116047 Msa1384100:intron 20.0%
!! TATTCTTGATGAACATTTAT+TGG - tig0020633:116532-116551 Msa1384100:CDS 20.0%
!! TAATCATTACCCATATTAAA+TGG + tig0020633:116578-116597 None:intergenic 20.0%
!!! TAATTATGTTTGATTTTGTC+AGG - tig0020633:116794-116813 Msa1384100:CDS 20.0%
!!! AACAGAAAACCATTTTTATT+GGG + tig0020633:117157-117176 None:intergenic 20.0%
!!! AAACAGAAAACCATTTTTAT+TGG + tig0020633:117158-117177 None:intergenic 20.0%
!! CAATCTGAATAAATTATATG+TGG - tig0020633:117247-117266 Msa1384100:five_prime_UTR 20.0%
! TAGTTAAGAAAAATAGGGTT+TGG - tig0020633:113487-113506 Msa1384100:intron 25.0%
! AGTTAAGAAAAATAGGGTTT+GGG - tig0020633:113488-113507 Msa1384100:intron 25.0%
! AAATCTAACTTAGTTTCAAC+GGG + tig0020633:113522-113541 None:intergenic 25.0%
! AGTGTTATATTTCCTTGAAT+TGG - tig0020633:113909-113928 Msa1384100:intron 25.0%
! AGACAAAAAAATCCAATTCA+AGG + tig0020633:113924-113943 None:intergenic 25.0%
! TAAGACATATGTGCATTATT+AGG - tig0020633:114089-114108 Msa1384100:intron 25.0%
! ATAAATACATACCACATTCT+TGG + tig0020633:114576-114595 None:intergenic 25.0%
!!! CTGCATTATTTTTCAAAACA+CGG + tig0020633:114885-114904 None:intergenic 25.0%
! AAAATCTACTAATCTTGCTA+AGG - tig0020633:115036-115055 Msa1384100:intron 25.0%
! TTGTTGAAGCAAAAGTTTAT+TGG - tig0020633:115489-115508 Msa1384100:intron 25.0%
!!! GCAAAAGTTTATTGGTTTTA+TGG - tig0020633:115497-115516 Msa1384100:intron 25.0%
!!! AAAGTTTATTGGTTTTATGG+GGG - tig0020633:115500-115519 Msa1384100:intron 25.0%
!! AATACTATTGGTTATCTGTT+AGG - tig0020633:115545-115564 Msa1384100:intron 25.0%
! TTCGTTAGTCAATATAAAAC+CGG + tig0020633:115586-115605 None:intergenic 25.0%
!!! GTTTTATATTGACTAACGAA+AGG - tig0020633:115586-115605 Msa1384100:intron 25.0%
!!! TTACTAACTTCTAGAATGAA+TGG - tig0020633:115704-115723 Msa1384100:intron 25.0%
! TAGAATGAATGGATATTAAG+TGG - tig0020633:115715-115734 Msa1384100:intron 25.0%
! GAATAAGTGCATAAAAGATT+GGG + tig0020633:115753-115772 None:intergenic 25.0%
! GTTTCTGCAACAAAATAAAT+GGG + tig0020633:116376-116395 None:intergenic 25.0%
! AGTTTCTGCAACAAAATAAA+TGG + tig0020633:116377-116396 None:intergenic 25.0%
!!! ATTTATTTTGTTGCAGAAAC+TGG - tig0020633:116376-116395 Msa1384100:CDS 25.0%
! CAACTTTGCAAGTAAATTTA+TGG - tig0020633:116496-116515 Msa1384100:CDS 25.0%
! TAAATTTATGGCTAAGCATT+TGG - tig0020633:116508-116527 Msa1384100:CDS 25.0%
! ACTAGCAAAGACAAAATAAA+GGG + tig0020633:116689-116708 None:intergenic 25.0%
! AACTAGCAAAGACAAAATAA+AGG + tig0020633:116690-116709 None:intergenic 25.0%
! TAGTTTCATCCTTTCATTTA+AGG + tig0020633:116935-116954 None:intergenic 25.0%
!!! GGATGAAACTATTTTAGTTT+CGG - tig0020633:116944-116963 Msa1384100:CDS 25.0%
!! AGTTTTCCAAGATAGATAAA+GGG + tig0020633:117126-117145 None:intergenic 25.0%
!! AAGTTTTCCAAGATAGATAA+AGG + tig0020633:117127-117146 None:intergenic 25.0%
!!! GTTTTAAATTGCTATGAAGA+GGG - tig0020633:117217-117236 Msa1384100:five_prime_UTR 25.0%
CGTTATTCACAATAACAGAA+CGG + tig0020633:113287-113306 None:intergenic 30.0%
CGTTCTGTTATTGTGAATAA+CGG - tig0020633:113285-113304 Msa1384100:intron 30.0%
GTTATTGTGAATAACGGTAA+CGG - tig0020633:113291-113310 Msa1384100:intron 30.0%
GGTTATAATTTGAGGAGTAA+CGG - tig0020633:113312-113331 Msa1384100:intron 30.0%
!! GTTGGTAATGTTAGTGTAAA+TGG - tig0020633:113339-113358 Msa1384100:intron 30.0%
! GAGAATGATAGTGTAAACAA+TGG - tig0020633:113366-113385 Msa1384100:intron 30.0%
! ATGGAGCTTTTGATGTAAAT+AGG - tig0020633:113385-113404 Msa1384100:intron 30.0%
TAATGATGATTTACTGCAAG+TGG - tig0020633:113998-114017 Msa1384100:intron 30.0%
AATTACACTCTAAACTTCCT+TGG - tig0020633:114034-114053 Msa1384100:intron 30.0%
ATTACACTCTAAACTTCCTT+GGG - tig0020633:114035-114054 Msa1384100:intron 30.0%
ATGAATAAGATTTCAACCCA+AGG + tig0020633:114054-114073 None:intergenic 30.0%
! AAAAACTGGCTTCATTTACA+AGG - tig0020633:114760-114779 Msa1384100:intron 30.0%
!!! CGTGTTTTGAAAAATAATGC+AGG - tig0020633:114883-114902 Msa1384100:CDS 30.0%
!!! GTTTTGAAAAATAATGCAGG+CGG - tig0020633:114886-114905 Msa1384100:CDS 30.0%
CCAACAAATACAACAACATA+TGG + tig0020633:115001-115020 None:intergenic 30.0%
CCATATGTTGTTGTATTTGT+TGG - tig0020633:114998-115017 Msa1384100:intron 30.0%
! GTTGTATTTGTTGGAGTTAA+TGG - tig0020633:115007-115026 Msa1384100:intron 30.0%
TATGTAAAAATTCCGTACGT+CGG - tig0020633:115089-115108 Msa1384100:CDS 30.0%
ACACAATGTTAATGTCATGA+TGG - tig0020633:115183-115202 Msa1384100:intron 30.0%
TCAAATATAGGGATCTGAAA+GGG + tig0020633:115347-115366 None:intergenic 30.0%
CATAACCCTTCTCAAATATA+GGG + tig0020633:115358-115377 None:intergenic 30.0%
TCATAACCCTTCTCAAATAT+AGG + tig0020633:115359-115378 None:intergenic 30.0%
ACCAAATGACTCAATACTAT+TGG - tig0020633:115533-115552 Msa1384100:intron 30.0%
! ACCAATAGTATTGAGTCATT+TGG + tig0020633:115537-115556 None:intergenic 30.0%
TATAAAACCGGTATTAATCC+CGG + tig0020633:115574-115593 None:intergenic 30.0%
AGTAACTGTTTCATTCAGTT+AGG + tig0020633:115689-115708 None:intergenic 30.0%
GGAATAAGTGCATAAAAGAT+TGG + tig0020633:115754-115773 None:intergenic 30.0%
TTAGAGGTTCCATTTCTTAA+GGG + tig0020633:115787-115806 None:intergenic 30.0%
ATTAGAGGTTCCATTTCTTA+AGG + tig0020633:115788-115807 None:intergenic 30.0%
GGAAAATTGTCATAGTTGAA+TGG - tig0020633:116049-116068 Msa1384100:intron 30.0%
! TTGTCATAGTTGAATGGTTT+TGG - tig0020633:116055-116074 Msa1384100:intron 30.0%
TGAATAAATTGAACCTAACC+TGG + tig0020633:116288-116307 None:intergenic 30.0%
ATGATAAGGTATGCAAATAC+TGG - tig0020633:116468-116487 Msa1384100:CDS 30.0%
CTTGATGAACATTTATTGGT+TGG - tig0020633:116536-116555 Msa1384100:CDS 30.0%
AAAGACAAAATAAAGGGAAG+GGG + tig0020633:116683-116702 None:intergenic 30.0%
CAAAGACAAAATAAAGGGAA+GGG + tig0020633:116684-116703 None:intergenic 30.0%
! CTATTTCTTGCGAATGAAAT+TGG + tig0020633:116741-116760 None:intergenic 30.0%
!! TTATGTTTGATTTTGTCAGG+TGG - tig0020633:116797-116816 Msa1384100:CDS 30.0%
!! TATGTTTGATTTTGTCAGGT+GGG - tig0020633:116798-116817 Msa1384100:CDS 30.0%
CTTTCAATGGTTTACATATC+TGG - tig0020633:116828-116847 Msa1384100:CDS 30.0%
ACAGAGTAATAGGATTAACA+AGG + tig0020633:117037-117056 None:intergenic 30.0%
TGTTAATCCTATTACTCTGT+AGG - tig0020633:117037-117056 Msa1384100:CDS 30.0%
!!! GCAGTTTGGTTTGTTTATTT+TGG - tig0020633:117087-117106 Msa1384100:CDS 30.0%
! TTTTCCAAGATAGATAAAGG+GGG + tig0020633:117124-117143 None:intergenic 30.0%
! GTTTTCCAAGATAGATAAAG+GGG + tig0020633:117125-117144 None:intergenic 30.0%
!! CGTTTTAAATTGCTATGAAG+AGG - tig0020633:117216-117235 Msa1384100:five_prime_UTR 30.0%
AATTCAAAATCGCGTTACCT+GGG + tig0020633:112704-112723 None:intergenic 35.0%
AAATTCAAAATCGCGTTACC+TGG + tig0020633:112705-112724 None:intergenic 35.0%
!!! CAGTTACTGATTTTCACAAG+AGG - tig0020633:112751-112770 Msa1384100:three_prime_UTR 35.0%
!!! TTACTGATTTTCACAAGAGG+AGG - tig0020633:112754-112773 Msa1384100:three_prime_UTR 35.0%
! GATCGAATCAATGTATCGAT+CGG + tig0020633:112829-112848 None:intergenic 35.0%
! TGGACTTTTCACAATGATCT+AGG - tig0020633:112922-112941 Msa1384100:exon 35.0%
CTGATCAAAATCTCGATACA+CGG + tig0020633:113055-113074 None:intergenic 35.0%
GGATTTGAAGAAATCGAATC+CGG - tig0020633:113116-113135 Msa1384100:intron 35.0%
! ACGGTAACGGTTATAATTTG+AGG - tig0020633:113304-113323 Msa1384100:intron 35.0%
CTTTATTCCTAACCTTCTTC+TGG + tig0020633:113413-113432 None:intergenic 35.0%
CAGAAGAAGGTTAGGAATAA+AGG - tig0020633:113411-113430 Msa1384100:CDS 35.0%
AAGAAGGTTAGGAATAAAGG+CGG - tig0020633:113414-113433 Msa1384100:CDS 35.0%
! GGATAGGAAGGTTGATTATT+TGG - tig0020633:113578-113597 Msa1384100:CDS 35.0%
! GAAGGTTGATTATTTGGCTA+AGG - tig0020633:113584-113603 Msa1384100:CDS 35.0%
GATTATTTGGCTAAGGAACA+AGG - tig0020633:113591-113610 Msa1384100:CDS 35.0%
!!! GATTTTTAGTAGTGACAGTG+AGG - tig0020633:113638-113657 Msa1384100:CDS 35.0%
AAGCCTGATGCTAAAAAGAA+GGG - tig0020633:113708-113727 Msa1384100:intron 35.0%
AACATCAATCGGAATCTATG+AGG + tig0020633:113868-113887 None:intergenic 35.0%
TCAAGCAACACAACATCAAT+CGG + tig0020633:113879-113898 None:intergenic 35.0%
GCACATATGTCTTAAAGCAA+AGG + tig0020633:114083-114102 None:intergenic 35.0%
TTGGTATTCGTTTGAAAGTC+AGG - tig0020633:114141-114160 Msa1384100:intron 35.0%
ATTCGTTTGAAAGTCAGGAA+AGG - tig0020633:114146-114165 Msa1384100:intron 35.0%
CAATCAAAGCAACATGTAAG+AGG + tig0020633:114257-114276 None:intergenic 35.0%
TCACAAGGAAAATGGAAACA+GGG + tig0020633:114307-114326 None:intergenic 35.0%
! TGTTTCCATTTTCCTTGTGA+CGG - tig0020633:114307-114326 Msa1384100:intron 35.0%
TCAATCAAAGTAGCAGATCA+AGG + tig0020633:114373-114392 None:intergenic 35.0%
ATCCTCAACATCATTAGATG+TGG - tig0020633:114594-114613 Msa1384100:intron 35.0%
!! TTACATTCTGTGTCACTTGT+AGG - tig0020633:114683-114702 Msa1384100:CDS 35.0%
AAGTCTTGAAGGCAAAAAAC+TGG - tig0020633:114746-114765 Msa1384100:intron 35.0%
!!! TGGTTCGTATTTTAACTCCT+AGG - tig0020633:114924-114943 Msa1384100:CDS 35.0%
AATATGTCAATAGAACGCCT+AGG + tig0020633:114944-114963 None:intergenic 35.0%
GCGTTCTATTGACATATTGA+GGG - tig0020633:114946-114965 Msa1384100:intron 35.0%
TTTGTTGGAGTTAATGGAGT+TGG - tig0020633:115013-115032 Msa1384100:intron 35.0%
TACTAATCTTGCTAAGGTGA+AGG - tig0020633:115042-115061 Msa1384100:intron 35.0%
ATGTAAAAATTCCGTACGTC+GGG - tig0020633:115090-115109 Msa1384100:CDS 35.0%
GAAAATGGAATATCTCCTTC+AGG + tig0020633:115128-115147 None:intergenic 35.0%
CTGCATAATCACACAGAAAA+TGG + tig0020633:115143-115162 None:intergenic 35.0%
! CATTTTCTGTGTGATTATGC+AGG - tig0020633:115141-115160 Msa1384100:CDS 35.0%
ATCTGAAAGGGGGAATTATA+AGG + tig0020633:115335-115354 None:intergenic 35.0%
AAATATAGGGATCTGAAAGG+GGG + tig0020633:115345-115364 None:intergenic 35.0%
CAAATATAGGGATCTGAAAG+GGG + tig0020633:115346-115365 None:intergenic 35.0%
CTCAAATATAGGGATCTGAA+AGG + tig0020633:115348-115367 None:intergenic 35.0%
TCAGATCCCTATATTTGAGA+AGG - tig0020633:115349-115368 Msa1384100:intron 35.0%
CAGATCCCTATATTTGAGAA+GGG - tig0020633:115350-115369 Msa1384100:intron 35.0%
ATAAAACCGGTATTAATCCC+GGG + tig0020633:115573-115592 None:intergenic 35.0%
AACTGTTTCATTCAGTTAGG+CGG + tig0020633:115686-115705 None:intergenic 35.0%
AAGTGCATAAAAGATTGGGA+GGG + tig0020633:115749-115768 None:intergenic 35.0%
TAAGTGCATAAAAGATTGGG+AGG + tig0020633:115750-115769 None:intergenic 35.0%
TTTCTTAAGGGGATTCTGTT+AGG + tig0020633:115775-115794 None:intergenic 35.0%
AACAGAATCCCCTTAAGAAA+TGG - tig0020633:115775-115794 Msa1384100:intron 35.0%
TAGAGGTTCCATTTCTTAAG+GGG + tig0020633:115786-115805 None:intergenic 35.0%
TTCATGGCCCATTTCATTAT+TGG - tig0020633:115936-115955 Msa1384100:intron 35.0%
TCATGGCCCATTTCATTATT+GGG - tig0020633:115937-115956 Msa1384100:intron 35.0%
CTATCACTGTTTCAGTTTCT+AGG - tig0020633:115970-115989 Msa1384100:intron 35.0%
TTCATCTTACATGTCACTGA+TGG - tig0020633:116133-116152 Msa1384100:CDS 35.0%
TTTCAAAGTTCAACCAGGTT+AGG - tig0020633:116272-116291 Msa1384100:CDS 35.0%
!! TAGCTTTGTCCAACTACAAT+TGG - tig0020633:116312-116331 Msa1384100:CDS 35.0%
! AGCTTTGTCCAACTACAATT+GGG - tig0020633:116313-116332 Msa1384100:CDS 35.0%
GGGTTCAATAACAGACTTAT+GGG + tig0020633:116356-116375 None:intergenic 35.0%
TGGGTTCAATAACAGACTTA+TGG + tig0020633:116357-116376 None:intergenic 35.0%
AAGATCCCATCAATCAATCT+GGG + tig0020633:116425-116444 None:intergenic 35.0%
! GTTCGACACTATTGATGATA+AGG - tig0020633:116454-116473 Msa1384100:CDS 35.0%
! TGAACATTTATTGGTTGGCT+AGG - tig0020633:116541-116560 Msa1384100:CDS 35.0%
GGAGACTGTCCATTTAATAT+GGG - tig0020633:116566-116585 Msa1384100:CDS 35.0%
ATTCATTCGATGCTTTCTTG+TGG + tig0020633:116618-116637 None:intergenic 35.0%
TGAGATGGAAACAAAATCAG+CGG + tig0020633:116646-116665 None:intergenic 35.0%
AAGACAAAATAAAGGGAAGG+GGG + tig0020633:116682-116701 None:intergenic 35.0%
GCAAAGACAAAATAAAGGGA+AGG + tig0020633:116685-116704 None:intergenic 35.0%
AAACTGAAAACATTCGTGAC+AGG + tig0020633:116997-117016 None:intergenic 35.0%
AAAGTCATAGCCACATAGTT+TGG + tig0020633:117063-117082 None:intergenic 35.0%
AAACTATGTGGCTATGACTT+TGG - tig0020633:117062-117081 Msa1384100:CDS 35.0%
!! GGGTTTTATGCGTTTTGTTG+AGG + tig0020633:112678-112697 None:intergenic 40.0%
CAATTTCATTGCATGACCAG+AGG + tig0020633:112786-112805 None:intergenic 40.0%
CTCTGGTCATGCAATGAAAT+TGG - tig0020633:112784-112803 Msa1384100:three_prime_UTR 40.0%
! GAAATTGGCAACGCTTTGAA+AGG - tig0020633:112799-112818 Msa1384100:three_prime_UTR 40.0%
GATTCGATCTTGTCTTCTAG+AGG - tig0020633:112840-112859 Msa1384100:three_prime_UTR 40.0%
TCTTACAATTACGATGCACC+TGG - tig0020633:112880-112899 Msa1384100:three_prime_UTR 40.0%
GAGCTGCTTATTCTCTCAAA+TGG - tig0020633:112902-112921 Msa1384100:three_prime_UTR 40.0%
AATTCTGCATCTGCTCTATG+TGG - tig0020633:112972-112991 Msa1384100:CDS 40.0%
AAAATCTCGATACACGGTTC+TGG + tig0020633:113049-113068 None:intergenic 40.0%
TTTGAAGAAATCGAATCCGG+TGG - tig0020633:113119-113138 Msa1384100:intron 40.0%
GTTTGAAGAATGACGGTGAT+GGG - tig0020633:113232-113251 Msa1384100:intron 40.0%
!! AATGACGGTGATGGGAAAAA+TGG - tig0020633:113240-113259 Msa1384100:intron 40.0%
!! ATGACGGTGATGGGAAAAAT+GGG - tig0020633:113241-113260 Msa1384100:intron 40.0%
TGTAAATAGGCTCCAGAAGA+AGG - tig0020633:113398-113417 Msa1384100:CDS 40.0%
AGAAGGTTAGGAATAAAGGC+GGG - tig0020633:113415-113434 Msa1384100:CDS 40.0%
ACGGATCATGTTGATGTTGA+TGG - tig0020633:113543-113562 Msa1384100:intron 40.0%
CGGATCATGTTGATGTTGAT+GGG - tig0020633:113544-113563 Msa1384100:intron 40.0%
GGATCATGTTGATGTTGATG+GGG - tig0020633:113545-113564 Msa1384100:intron 40.0%
! TGAAGAGGATGATGATGATG+AGG - tig0020633:113662-113681 Msa1384100:CDS 40.0%
! ATGATGAGGATGATGATGCT+GGG - tig0020633:113676-113695 Msa1384100:CDS 40.0%
CAAGCCTGATGCTAAAAAGA+AGG - tig0020633:113707-113726 Msa1384100:intron 40.0%
!! CAACCCTTCTTTTTAGCATC+AGG + tig0020633:113714-113733 None:intergenic 40.0%
CTGATGCTAAAAAGAAGGGT+TGG - tig0020633:113712-113731 Msa1384100:intron 40.0%
! GGTTTTCATCTATGTTCCAG+AGG - tig0020633:113733-113752 Msa1384100:intron 40.0%
AAGTTCAGCAAGTTTACCTC+TGG + tig0020633:113752-113771 None:intergenic 40.0%
TGATGATTTACTGCAAGTGG+TGG - tig0020633:114001-114020 Msa1384100:intron 40.0%
GTCACAAGGAAAATGGAAAC+AGG + tig0020633:114308-114327 None:intergenic 40.0%
TAGACTCATGACCAAGAATG+TGG - tig0020633:114562-114581 Msa1384100:intron 40.0%
CACCACATCTAATGATGTTG+AGG + tig0020633:114599-114618 None:intergenic 40.0%
CTCAACATCATTAGATGTGG+TGG - tig0020633:114597-114616 Msa1384100:CDS 40.0%
TGAGAAGCTATGTGAATCAG+TGG - tig0020633:114719-114738 Msa1384100:intron 40.0%
AAAAATAATGCAGGCGGCAA+TGG - tig0020633:114892-114911 Msa1384100:CDS 40.0%
GGCGTTCTATTGACATATTG+AGG - tig0020633:114945-114964 Msa1384100:intron 40.0%
TTCATGCTGCAAAAGAGCAA+AGG - tig0020633:114972-114991 Msa1384100:intron 40.0%
TGATTATGCAGGTTGCTTAC+TGG - tig0020633:115152-115171 Msa1384100:intron 40.0%
GCTTGTGATACATTTCGATC+AGG - tig0020633:115208-115227 Msa1384100:intron 40.0%
TGAAAAAGATCCTGCTGTTG+TGG - tig0020633:115376-115395 Msa1384100:intron 40.0%
TGTGGCAAAAGAAGCAATTC+AGG - tig0020633:115394-115413 Msa1384100:intron 40.0%
AAGCAATTCAGGAAGCTTCA+CGG - tig0020633:115405-115424 Msa1384100:intron 40.0%
TTGGTTATCTGTTAGGAACC+CGG - tig0020633:115552-115571 Msa1384100:intron 40.0%
AAATTGAGCCACGCTCTTAT+AGG - tig0020633:115609-115628 Msa1384100:intron 40.0%
AGTAGGATATTCCTCTCTGA+AGG + tig0020633:115663-115682 None:intergenic 40.0%
AGAAGACTTAAGAGAGCTGA+TGG + tig0020633:115824-115843 None:intergenic 40.0%
! TTGGAGGGTATACTCTATAC+TGG + tig0020633:115878-115897 None:intergenic 40.0%
AGTATAGAGTATACCCTCCA+AGG - tig0020633:115877-115896 Msa1384100:intron 40.0%
TAATGAAATGGGCCATGAAG+AGG + tig0020633:115935-115954 None:intergenic 40.0%
CTGGAGCCCAATAATGAAAT+GGG + tig0020633:115946-115965 None:intergenic 40.0%
! TCTGGAGCCCAATAATGAAA+TGG + tig0020633:115947-115966 None:intergenic 40.0%
GTACTATCTCTTGACAGCAA+AGG + tig0020633:115996-116015 None:intergenic 40.0%
! ACATGTCACTGATGGTTTTC+AGG - tig0020633:116141-116160 Msa1384100:CDS 40.0%
TTTGACAGTGCTCTCATCAA+TGG + tig0020633:116175-116194 None:intergenic 40.0%
CTTCTCCAACAAATAAGACC+AGG + tig0020633:116222-116241 None:intergenic 40.0%
! CTTATTTGTTGGAGAAGCAC+TGG - tig0020633:116225-116244 Msa1384100:CDS 40.0%
TCAGCTTTCAAAGTTCAACC+AGG - tig0020633:116267-116286 Msa1384100:CDS 40.0%
CTACACCCAGATTGATTGAT+GGG - tig0020633:116417-116436 Msa1384100:CDS 40.0%
CAAGATCCCATCAATCAATC+TGG + tig0020633:116426-116445 None:intergenic 40.0%
! CATTTATTGGTTGGCTAGGA+CGG - tig0020633:116545-116564 Msa1384100:CDS 40.0%
CGGAGACTGTCCATTTAATA+TGG - tig0020633:116565-116584 Msa1384100:CDS 40.0%
ACTTGACGTTGAGTTTCTTG+AGG + tig0020633:116896-116915 None:intergenic 40.0%
!! TTTAAGGAGCGTCTTCACAA+TGG + tig0020633:116919-116938 None:intergenic 40.0%
GAAGACGCTCCTTAAATGAA+AGG - tig0020633:116923-116942 Msa1384100:CDS 40.0%
AGTTTGGCCTACAGAGTAAT+AGG + tig0020633:117047-117066 None:intergenic 40.0%
CTATGACTTTGGATGCAGTT+TGG - tig0020633:117073-117092 Msa1384100:CDS 40.0%
TCTTCCCCCTTTATCTATCT+TGG - tig0020633:117117-117136 Msa1384100:intron 40.0%
AACGCATAAAACCCAAACCC+AGG - tig0020633:112684-112703 Msa1384100:three_prime_UTR 45.0%
AAATCGCGTTACCTGGGTTT+GGG + tig0020633:112698-112717 None:intergenic 45.0%
AAAATCGCGTTACCTGGGTT+TGG + tig0020633:112699-112718 None:intergenic 45.0%
CAAGAGGAGGATTAATCCTC+TGG - tig0020633:112767-112786 Msa1384100:three_prime_UTR 45.0%
TTGAGAGAATAAGCAGCTCC+AGG + tig0020633:112901-112920 None:intergenic 45.0%
TGTTAAGCGTGAATTCTCGC+AGG - tig0020633:113011-113030 Msa1384100:CDS 45.0%
GCAGTTGAAGATTGAAGCTG+AGG - tig0020633:113083-113102 Msa1384100:intron 45.0%
AAATCGAATCCGGTGGTTGT+AGG - tig0020633:113126-113145 Msa1384100:intron 45.0%
ATAGGAAACAGCAGGTGACA+TGG - tig0020633:113154-113173 Msa1384100:intron 45.0%
AAACAGCAGGTGACATGGAA+GGG - tig0020633:113159-113178 Msa1384100:intron 45.0%
GGTTTGAAGAATGACGGTGA+TGG - tig0020633:113231-113250 Msa1384100:intron 45.0%
!! TTGAGGAGTAACGGTGTTGT+TGG - tig0020633:113321-113340 Msa1384100:intron 45.0%
ATAGGCTCCAGAAGAAGGTT+AGG - tig0020633:113403-113422 Msa1384100:CDS 45.0%
GTTAGGAATAAAGGCGGGAA+TGG - tig0020633:113420-113439 Msa1384100:CDS 45.0%
AACAGACGCTGTTGTAACCA+AGG - tig0020633:113449-113468 Msa1384100:CDS 45.0%
! TGTTGATGGGGATGCTGATA+AGG - tig0020633:113557-113576 Msa1384100:intron 45.0%
ATGGGGATGCTGATAAGGAT+AGG - tig0020633:113562-113581 Msa1384100:intron 45.0%
GGATGCTGATAAGGATAGGA+AGG - tig0020633:113566-113585 Msa1384100:intron 45.0%
! GGAACAAGGTGAGAGTATGA+TGG - tig0020633:113605-113624 Msa1384100:CDS 45.0%
TAGTGACAGTGAGGATGAAG+AGG - tig0020633:113647-113666 Msa1384100:CDS 45.0%
! GATGATGAGGATGATGATGC+TGG - tig0020633:113675-113694 Msa1384100:CDS 45.0%
!! GAAAGTCAGGAAAGGTGTTG+AGG - tig0020633:114154-114173 Msa1384100:intron 45.0%
CGATACCGTCACAAGGAAAA+TGG + tig0020633:114315-114334 None:intergenic 45.0%
ATGCTTGTGCTCAGTATTGC+TGG - tig0020633:114485-114504 Msa1384100:CDS 45.0%
TGCTTGTGCTCAGTATTGCT+GGG - tig0020633:114486-114505 Msa1384100:CDS 45.0%
TATTGCTGGGAAGGCCAATT+TGG - tig0020633:114499-114518 Msa1384100:intron 45.0%
GAAGGCCAATTTGGAGAAGT+CGG - tig0020633:114508-114527 Msa1384100:intron 45.0%
CAAGTCCGACTTCTCCAAAT+TGG + tig0020633:114516-114535 None:intergenic 45.0%
CAATTTGGAGAAGTCGGACT+TGG - tig0020633:114514-114533 Msa1384100:intron 45.0%
!! ACCAGCTTTGAAAGCTCTGA+AGG - tig0020633:114538-114557 Msa1384100:intron 45.0%
TCCTTCAGAGCTTTCAAAGC+TGG + tig0020633:114542-114561 None:intergenic 45.0%
AAGGATATCTTCCACAGTGC+AGG - tig0020633:114779-114798 Msa1384100:intron 45.0%
TATCTTCCACAGTGCAGGTT+TGG - tig0020633:114784-114803 Msa1384100:intron 45.0%
TAGAAACCAAACCTGCACTG+TGG + tig0020633:114793-114812 None:intergenic 45.0%
GTCGGCATCAAATGTCGATA+GGG + tig0020633:114823-114842 None:intergenic 45.0%
TAAAAAGCAAGCCCGACGTA+CGG + tig0020633:115104-115123 None:intergenic 45.0%
!!! GGGCTTGCTTTTTAACCTGA+AGG - tig0020633:115110-115129 Msa1384100:CDS 45.0%
ATTCAGGAAGCTTCACGGAA+TGG - tig0020633:115410-115429 Msa1384100:intron 45.0%
TGGTTATCTGTTAGGAACCC+GGG - tig0020633:115553-115572 Msa1384100:intron 45.0%
TAGGAACCCGGGATTAATAC+CGG - tig0020633:115564-115583 Msa1384100:intron 45.0%
! GTTGCTTTCCTATAAGAGCG+TGG + tig0020633:115620-115639 None:intergenic 45.0%
TTCATTCAGTTAGGCGGAGT+AGG + tig0020633:115680-115699 None:intergenic 45.0%
TAAAAGATTGGGAGGGTAGC+TGG + tig0020633:115742-115761 None:intergenic 45.0%
GGTTAATGACGTGGCATTAG+AGG + tig0020633:115803-115822 None:intergenic 45.0%
AGAGCTGATGGTTAATGACG+TGG + tig0020633:115812-115831 None:intergenic 45.0%
!! CTTCTAGAGTATACCCTCCA+AGG - tig0020633:115839-115858 Msa1384100:intron 45.0%
AGAGTATACCCTCCAAGGTT+TGG - tig0020633:115844-115863 Msa1384100:intron 45.0%
GAGTATACCCTCCAAGGTTT+GGG - tig0020633:115845-115864 Msa1384100:intron 45.0%
GAGGATCAGATTGTGGATAC+TGG + tig0020633:115916-115935 None:intergenic 45.0%
CCATGAAGAGGATCAGATTG+TGG + tig0020633:115923-115942 None:intergenic 45.0%
CCACAATCTGATCCTCTTCA+TGG - tig0020633:115920-115939 Msa1384100:intron 45.0%
CTGAAACAGTGATAGAGCTC+TGG + tig0020633:115965-115984 None:intergenic 45.0%
CTACCTTAACAATCCTGACC+TGG - tig0020633:116201-116220 Msa1384100:CDS 45.0%
AGACCAGGTCAGGATTGTTA+AGG + tig0020633:116207-116226 None:intergenic 45.0%
CCAACAAATAAGACCAGGTC+AGG + tig0020633:116217-116236 None:intergenic 45.0%
!! CCTGACCTGGTCTTATTTGT+TGG - tig0020633:116214-116233 Msa1384100:CDS 45.0%
!! TTTGTTGGAGAAGCACTGGT+TGG - tig0020633:116229-116248 Msa1384100:CDS 45.0%
GACGAAGACCCAATTGTAGT+TGG + tig0020633:116324-116343 None:intergenic 45.0%
CCATCAATCAATCTGGGTGT+AGG + tig0020633:116419-116438 None:intergenic 45.0%
CCTACACCCAGATTGATTGA+TGG - tig0020633:116416-116435 Msa1384100:CDS 45.0%
GAGTTTCTTGAGGTCGGTAT+AGG + tig0020633:116886-116905 None:intergenic 45.0%
GACGTTGAGTTTCTTGAGGT+CGG + tig0020633:116892-116911 None:intergenic 45.0%
AAACATTCGTGACAGGTCAC+AGG + tig0020633:116990-117009 None:intergenic 45.0%
ACTCTGTAGGCCAAACTATG+TGG - tig0020633:117050-117069 Msa1384100:CDS 45.0%
! TGTCTTCTAGAGGAGCGATC+TGG - tig0020633:112850-112869 Msa1384100:three_prime_UTR 50.0%
! TCTCGATACACGGTTCTGGT+GGG + tig0020633:113045-113064 None:intergenic 50.0%
! ATCTCGATACACGGTTCTGG+TGG + tig0020633:113046-113065 None:intergenic 50.0%
CTATTCCCACCTACAACCAC+CGG + tig0020633:113138-113157 None:intergenic 50.0%
AGGTGGGAATAGGAAACAGC+AGG - tig0020633:113146-113165 Msa1384100:intron 50.0%
GAAACAGCAGGTGACATGGA+AGG - tig0020633:113158-113177 Msa1384100:intron 50.0%
TGGAAGGGAGATGGATCTGA+TGG - tig0020633:113174-113193 Msa1384100:intron 50.0%
GGAAGGGAGATGGATCTGAT+GGG - tig0020633:113175-113194 Msa1384100:intron 50.0%
! AAGAAGAATGCCAGTGCTGG+TGG - tig0020633:113198-113217 Msa1384100:intron 50.0%
GGCGGTGGTTTGAAGAATGA+CGG - tig0020633:113225-113244 Msa1384100:intron 50.0%
AACCAAGGCTGAGCCGAAAA+AGG - tig0020633:113464-113483 Msa1384100:intron 50.0%
!!! TACCTTTTTCGGCTCAGCCT+TGG + tig0020633:113469-113488 None:intergenic 50.0%
!! TCAGGAAAGGTGTTGAGGTC+AGG - tig0020633:114159-114178 Msa1384100:intron 50.0%
!! CAGGAAAGGTGTTGAGGTCA+GGG - tig0020633:114160-114179 Msa1384100:intron 50.0%
!! AGGAAAGGTGTTGAGGTCAG+GGG - tig0020633:114161-114180 Msa1384100:intron 50.0%
! GTTGAGGTCAGGGGCATATA+TGG - tig0020633:114170-114189 Msa1384100:intron 50.0%
TCCTTGTGACGGTATCGTCT+TGG - tig0020633:114318-114337 Msa1384100:intron 50.0%
CCTTGTGACGGTATCGTCTT+GGG - tig0020633:114319-114338 Msa1384100:intron 50.0%
TGTGCTCAGTATTGCTGGGA+AGG - tig0020633:114490-114509 Msa1384100:CDS 50.0%
!! TCTGTGTCACTTGTAGGCTG+AGG - tig0020633:114689-114708 Msa1384100:intron 50.0%
TCAGTGGCTGCAAGTCTTGA+AGG - tig0020633:114735-114754 Msa1384100:intron 50.0%
GGTCGGCATCAAATGTCGAT+AGG + tig0020633:114824-114843 None:intergenic 50.0%
! GCTTCTTTTGCCACAACAGC+AGG + tig0020633:115389-115408 None:intergenic 50.0%
GGAAGCTTCACGGAATGGTT+CGG - tig0020633:115415-115434 Msa1384100:intron 50.0%
! ATTCCTCTCTGAAGGAGCCT+TGG + tig0020633:115655-115674 None:intergenic 50.0%
TGGGTGTAGGAGATGTGGAA+AGG + tig0020633:116406-116425 None:intergenic 50.0%
CAATCTGGGTGTAGGAGATG+TGG + tig0020633:116411-116430 None:intergenic 50.0%
GGCGAAATACATGGGTGAGA+TGG + tig0020633:116661-116680 None:intergenic 50.0%
TGGAGCTCCAGTCATGTTTG+TGG - tig0020633:116848-116867 Msa1384100:CDS 50.0%
GGAGCTCCAGTCATGTTTGT+GGG - tig0020633:116849-116868 Msa1384100:CDS 50.0%
CCAGTCATGTTTGTGGGATG+CGG - tig0020633:116855-116874 Msa1384100:CDS 50.0%
TCTAGAGGAGCGATCTGGTG+CGG - tig0020633:112855-112874 Msa1384100:three_prime_UTR 55.0%
TGAAGCTGAGGCTCGTTCTG+AGG - tig0020633:113095-113114 Msa1384100:intron 55.0%
TCGAATCCGGTGGTTGTAGG+TGG - tig0020633:113129-113148 Msa1384100:intron 55.0%
CGAATCCGGTGGTTGTAGGT+GGG - tig0020633:113130-113149 Msa1384100:intron 55.0%
CGGTGGTTGTAGGTGGGAAT+AGG - tig0020633:113136-113155 Msa1384100:intron 55.0%
CAGGTGACATGGAAGGGAGA+TGG - tig0020633:113165-113184 Msa1384100:intron 55.0%
GGGAAGAAGAATGCCAGTGC+TGG - tig0020633:113195-113214 Msa1384100:intron 55.0%
!! AAGAATGCCAGTGCTGGTGG+TGG - tig0020633:113201-113220 Msa1384100:intron 55.0%
CCCAAGACGATACCGTCACA+AGG + tig0020633:114322-114341 None:intergenic 55.0%
CAGGAGCTGTTGAGCAGTTG+CGG - tig0020633:115227-115246 Msa1384100:intron 55.0%
GACTCATGCACGCAGACTTC+AGG - tig0020633:115249-115268 Msa1384100:intron 55.0%
GTTGTGCTAGTCGACACAGC+TGG - tig0020633:115440-115459 Msa1384100:intron 55.0%
ACCCTCCAAGGTTTGCGATG+TGG - tig0020633:115851-115870 Msa1384100:intron 55.0%
CCCACATCGCAAACCTTGGA+GGG + tig0020633:115855-115874 None:intergenic 55.0%
CCCTCCAAGGTTTGCGATGT+GGG - tig0020633:115852-115871 Msa1384100:intron 55.0%
! ACCCTCCAAGGTTTGGGATG+TGG - tig0020633:115889-115908 Msa1384100:intron 55.0%
CCCACATCCCAAACCTTGGA+GGG + tig0020633:115893-115912 None:intergenic 55.0%
! CCCTCCAAGGTTTGGGATGT+GGG - tig0020633:115890-115909 Msa1384100:intron 55.0%
GGGAAGGGGGCGAAATACAT+GGG + tig0020633:116669-116688 None:intergenic 55.0%
AGGGAAGGGGGCGAAATACA+TGG + tig0020633:116670-116689 None:intergenic 55.0%
GGTGGGAGCTGCACTTTCAA+TGG - tig0020633:116815-116834 Msa1384100:CDS 55.0%
CCGCATCCCACAAACATGAC+TGG + tig0020633:116858-116877 None:intergenic 55.0%
!! AATGCCAGTGCTGGTGGTGG+TGG - tig0020633:113204-113223 Msa1384100:intron 60.0%
GGCGGCAATGGAAGATGCAC+TGG - tig0020633:114904-114923 Msa1384100:CDS 60.0%
CGACACAGCTGGTCGTATGC+AGG - tig0020633:115451-115470 Msa1384100:intron 60.0%
GCAACAGACCACCTGAGCCA+AGG - tig0020633:115635-115654 Msa1384100:intron 60.0%
TGAAGGAGCCTTGGCTCAGG+TGG + tig0020633:115646-115665 None:intergenic 60.0%
! CTCTGAAGGAGCCTTGGCTC+AGG + tig0020633:115649-115668 None:intergenic 60.0%
GAGCCAAGGCTCCTTCAGAG+AGG - tig0020633:115649-115668 Msa1384100:intron 60.0%
GCCCACATCGCAAACCTTGG+AGG + tig0020633:115856-115875 None:intergenic 60.0%
CTGGCCCACATCGCAAACCT+TGG + tig0020633:115859-115878 None:intergenic 60.0%
GCCCACATCCCAAACCTTGG+AGG + tig0020633:115894-115913 None:intergenic 60.0%
CTGGCCCACATCCCAAACCT+TGG + tig0020633:115897-115916 None:intergenic 60.0%
!! GCCAGTGCTGGTGGTGGTGG+CGG - tig0020633:113207-113226 Msa1384100:intron 70.0%
ACCGCCACCACCACCAGCAC+TGG + tig0020633:113211-113230 None:intergenic 70.0%
!! AGTGCTGGTGGTGGTGGCGG+TGG - tig0020633:113210-113229 Msa1384100:intron 70.0%
Chromosome Type Strat End Strand Name
tig0020633 gene 112575 117291 112575 ID=Msa1384100;Name=Msa1384100
tig0020633 mRNA 112575 117291 112575 ID=Msa1384100-mRNA-1;Parent=Msa1384100;Name=Msa1384100-mRNA-1;_AED=0.06;_eAED=0.06;_QI=136|1|1|1|0.88|0.8|10|350|636
tig0020633 exon 112575 113050 112575 ID=Msa1384100-mRNA-1:exon:8920;Parent=Msa1384100-mRNA-1
tig0020633 exon 113391 113474 113391 ID=Msa1384100-mRNA-1:exon:8919;Parent=Msa1384100-mRNA-1
tig0020633 exon 113578 113703 113578 ID=Msa1384100-mRNA-1:exon:8918;Parent=Msa1384100-mRNA-1
tig0020633 exon 114394 114513 114394 ID=Msa1384100-mRNA-1:exon:8917;Parent=Msa1384100-mRNA-1
tig0020633 exon 114596 114703 114596 ID=Msa1384100-mRNA-1:exon:8916;Parent=Msa1384100-mRNA-1
tig0020633 exon 114809 114961 114809 ID=Msa1384100-mRNA-1:exon:8915;Parent=Msa1384100-mRNA-1
tig0020633 exon 115066 115161 115066 ID=Msa1384100-mRNA-1:exon:8914;Parent=Msa1384100-mRNA-1
tig0020633 exon 115283 115367 115283 ID=Msa1384100-mRNA-1:exon:8913;Parent=Msa1384100-mRNA-1
tig0020633 exon 116112 117129 116112 ID=Msa1384100-mRNA-1:exon:8912;Parent=Msa1384100-mRNA-1
tig0020633 exon 117161 117291 117161 ID=Msa1384100-mRNA-1:exon:8911;Parent=Msa1384100-mRNA-1
tig0020633 five_prime_UTR 117161 117291 117161 ID=Msa1384100-mRNA-1:five_prime_utr;Parent=Msa1384100-mRNA-1
tig0020633 five_prime_UTR 117125 117129 117125 ID=Msa1384100-mRNA-1:five_prime_utr;Parent=Msa1384100-mRNA-1
tig0020633 CDS 116112 117124 116112 ID=Msa1384100-mRNA-1:cds;Parent=Msa1384100-mRNA-1
tig0020633 CDS 115283 115367 115283 ID=Msa1384100-mRNA-1:cds;Parent=Msa1384100-mRNA-1
tig0020633 CDS 115066 115161 115066 ID=Msa1384100-mRNA-1:cds;Parent=Msa1384100-mRNA-1
tig0020633 CDS 114809 114961 114809 ID=Msa1384100-mRNA-1:cds;Parent=Msa1384100-mRNA-1
tig0020633 CDS 114596 114703 114596 ID=Msa1384100-mRNA-1:cds;Parent=Msa1384100-mRNA-1
tig0020633 CDS 114394 114513 114394 ID=Msa1384100-mRNA-1:cds;Parent=Msa1384100-mRNA-1
tig0020633 CDS 113578 113703 113578 ID=Msa1384100-mRNA-1:cds;Parent=Msa1384100-mRNA-1
tig0020633 CDS 113391 113474 113391 ID=Msa1384100-mRNA-1:cds;Parent=Msa1384100-mRNA-1
tig0020633 CDS 112925 113050 112925 ID=Msa1384100-mRNA-1:cds;Parent=Msa1384100-mRNA-1
tig0020633 three_prime_UTR 112575 112924 112575 ID=Msa1384100-mRNA-1:three_prime_utr;Parent=Msa1384100-mRNA-1
Gene Sequence

>Msa1384100

ATGTTAGAGCAGTTACTGATTTTCACAAGAGGAGGATTAATCCTCTGGTCATGCAATGAAATTGGCAACGCTTTGAAAGGATCACCGATCGATACATTGATTCGATCTTGTCTTCTAGAGGAGCGATCTGGTGCGGCATCTTACAATTACGATGCACCTGGAGCTGCTTATTCTCTCAAATGGACTTTTCACAATGATCTAGGTCTTGTTTTCGTTGCTGTTTATCAGAGAATTCTGCATCTGCTCTATGTGGATGATTTGCTTGCTGCTGTTAAGCGTGAATTCTCGCAGGTTTATGATCCCACCAGAACCGTGTATCGAGATTTTGATCAGATTTTTAAGCAGTTGAAGATTGAAGCTGAGGCTCGTTCTGAGGATTTGAAGAAATCGAATCCGGTGGTTGTAGGTGGGAATAGGAAACAGCAGGTGACATGGAAGGGAGATGGATCTGATGGGAAGAAGAATGCCAGTGCTGGTGGTGGTGGCGGTGGTTTGAAGAATGACGGTGATGGGAAAAATGGGAAGAAGAATTCTGATAATGACCGTTCTGTTATTGTGAATAACGGTAACGGTTATAATTTGAGGAGTAACGGTGTTGTTGGTAATGTTAGTGTAAATGGTAAAGAGAATGATAGTGTAAACAATGGAGCTTTTGATGTAAATAGGCTCCAGAAGAAGGTTAGGAATAAAGGCGGGAATGGAAAGAAAACAGACGCTGTTGTAACCAAGGCTGAGCCGAAAAAGGTAGTTAAGAAAAATAGGGTTTGGGATGACAAACCCGTTGAAACTAAGTTAGATTTTACGGATCATGTTGATGTTGATGGGGATGCTGATAAGGATAGGAAGGTTGATTATTTGGCTAAGGAACAAGGTGAGAGTATGATGGATAAAGATGAGATTTTTAGTAGTGACAGTGAGGATGAAGAGGATGATGATGATGAGGATGATGATGCTGGGAAGAAGAGCAAGCCTGATGCTAAAAAGAAGGGTTGGTTTTCATCTATGTTCCAGAGTATTGCTGGGAAGGCCAATTTGGAGAAGTCGGACTTGGAACCAGCTTTGAAAGCTCTGAAGGATAGACTCATGACCAAGAATGTGGCTGAGGAAATAGCTGAGAAGCTATGTGAATCAGTGGCTGCAAGTCTTGAAGGCAAAAAACTGGCTTCATTTACAAGGATATCTTCCACAGTGCAGGCGGCAATGGAAGATGCACTGGTTCGTATTTTAACTCCTAGGCGTTCTATTGACATATTGAGGGATGTTCATGCTGCAAAAGAGCAAAGGAAACCATATGTTGTTGTATTTGTTGGAGTTAATGGAGTTGGAAAATCTACTAATCTTGCTAAGGTTGCTTACTGGCTTCAGCAACACAATGTTAATGTCATGATGGCTGCTTGTGATACATTTCGATCAGGAGCTGTTGAGCAGTTGCGGACTCATGCACGCAGACTTCAGATCCCTATATTTGAGAAGGGTTATGAAAAAGATCCTGCTGTTGTGGCAAAAGAAGCAATTCAGGAAGCTTCACGGAATGGTTCGGATGTTGTGCTAGTCGACACAGCTGGTCGTATGCAGGATAATGAACCATTGATGAGAGCACTGTCAAAGCTGATCTACCTTAACAATCCTGACCTGGTCTTATTTGTTGGAGAAGCACTGGTTGGCAATGATGCAGTTGATCAGCTTTCAAAGTTCAACCAGAAACTGGCTGACCTTTCCACATCTCCTACACCCAGATTGATTGATGGGATCTTGCTCACAAAGTTCGACACTATTGATGATAAGGTGGGAGCTGCACTTTCAATGGTTTACATATCTGGAGCTCCAGTCATGTTTGTGGGATGCGGACAGTCCTATACCGACCTCAAGAAACTCAACGTCAAGTCCATTGTGAAGACGCTCCTTAAATGA

Protein sequence

>Msa1384100

MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYSLKWTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYRDFDQIFKQLKIEAEARSEDLKKSNPVVVGGNRKQQVTWKGDGSDGKKNASAGGGGGGLKNDGDGKNGKKNSDNDRSVIVNNGNGYNLRSNGVVGNVSVNGKENDSVNNGAFDVNRLQKKVRNKGGNGKKTDAVVTKAEPKKVVKKNRVWDDKPVETKLDFTDHVDVDGDADKDRKVDYLAKEQGESMMDKDEIFSSDSEDEEDDDDEDDDAGKKSKPDAKKKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHNVNVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK*