AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0095920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095920 MtrunA17_Chr5g0398571 98.408 314 5 0 198 511 1 314 0.0 627
Msa0095920 MtrunA17_Chr6g0467321 39.286 476 275 5 36 497 35 510 6.81e-104 321
Msa0095920 MtrunA17_Chr5g0428251 37.204 465 277 5 44 502 56 511 4.07e-100 312
Msa0095920 MtrunA17_Chr3g0140931 37.166 487 285 6 13 486 15 493 5.72e-99 309
Msa0095920 MtrunA17_Chr5g0397991 37.607 468 285 4 20 485 44 506 1.76e-98 307
Msa0095920 MtrunA17_Chr1g0203791 37.778 495 291 7 25 506 39 529 1.22e-97 305
Msa0095920 MtrunA17_Chr6g0473701 35.078 516 311 7 15 510 83 594 2.49e-95 301
Msa0095920 MtrunA17_Chr8g0389801 36.569 443 278 2 43 485 23 462 1.20e-92 290
Msa0095920 MtrunA17_Chr4g0013031 32.829 463 308 2 41 501 64 525 3.50e-90 285
Msa0095920 MtrunA17_Chr2g0295631 32.479 468 289 3 43 489 20 481 1.32e-81 263
Msa0095920 MtrunA17_Chr1g0208791 33.484 442 289 2 43 482 43 481 4.29e-75 245
Msa0095920 MtrunA17_Chr5g0398551 95.161 124 6 0 1 124 1 124 2.70e-73 228
Msa0095920 MtrunA17_Chr6g0483381 32.906 468 307 3 21 482 1 467 3.17e-70 232
Msa0095920 MtrunA17_Chr8g0392601 32.071 449 298 5 38 483 7 451 6.64e-68 226
Msa0095920 MtrunA17_Chr6g0483361 31.702 470 318 2 27 494 9 477 6.92e-68 226
Msa0095920 MtrunA17_Chr6g0449061 32.826 460 296 5 30 483 18 470 1.45e-67 225
Msa0095920 MtrunA17_Chr1g0208821 30.818 477 322 4 9 483 10 480 6.43e-65 218
Msa0095920 MtrunA17_Chr6g0477961 32.719 434 289 2 51 482 35 467 8.82e-64 215
Msa0095920 MtrunA17_Chr2g0317131 30.081 492 318 6 17 495 10 488 2.28e-63 214
Msa0095920 MtrunA17_Chr7g0251331 29.814 483 311 7 30 501 13 478 5.21e-61 207
Msa0095920 MtrunA17_Chr6g0483341 29.350 477 329 5 11 483 9 481 1.38e-60 207
Msa0095920 MtrunA17_Chr2g0317151 31.900 442 296 3 38 477 28 466 1.14e-59 204
Msa0095920 MtrunA17_Chr2g0317161 30.435 460 309 4 38 495 26 476 1.21e-56 196
Msa0095920 MtrunA17_Chr6g0483331 29.047 451 304 7 41 483 10 452 7.00e-56 194
Msa0095920 MtrunA17_Chr6g0483351 32.982 379 251 2 102 478 1 378 1.04e-54 189
Msa0095920 MtrunA17_Chr2g0317171 28.750 480 327 5 18 495 16 482 6.29e-54 189
Msa0095920 MtrunA17_Chr2g0322671 30.474 443 300 4 44 481 53 492 4.83e-53 187
Msa0095920 MtrunA17_Chr4g0024501 29.864 442 305 3 44 483 65 503 1.82e-51 183
Msa0095920 MtrunA17_Chr1g0208891 29.754 447 301 6 43 483 24 463 4.48e-49 176
Msa0095920 MtrunA17_Chr1g0208881 30.180 444 303 4 43 483 25 464 6.13e-49 175
Msa0095920 MtrunA17_Chr7g0251321 30.424 401 244 5 102 497 1 371 1.28e-47 169
Msa0095920 MtrunA17_Chr2g0288281 28.534 382 266 2 105 483 4 381 8.73e-46 164
Msa0095920 MtrunA17_Chr2g0317221 28.916 415 266 7 89 495 3 396 6.01e-45 163
Msa0095920 MtrunA17_Chr6g0487091 32.899 307 202 3 187 493 97 399 6.07e-45 163
Msa0095920 MtrunA17_Chr5g0412771 26.844 488 333 7 12 483 15 494 7.94e-44 162
Msa0095920 MtrunA17_Chr8g0368001 28.381 451 312 6 37 483 45 488 4.77e-42 157
Msa0095920 MtrunA17_Chr6g0483161 27.649 387 256 4 101 485 2 366 1.96e-41 152
Msa0095920 MtrunA17_Chr1g0154441 28.571 385 261 5 105 483 4 380 1.61e-39 147
Msa0095920 MtrunA17_Chr5g0442331 27.549 461 324 5 40 498 43 495 3.61e-39 149
Msa0095920 MtrunA17_Chr5g0412541 26.852 432 313 2 54 484 47 476 1.11e-38 147
Msa0095920 MtrunA17_Chr1g0202761 26.439 469 335 5 38 502 39 501 3.64e-38 146
Msa0095920 MtrunA17_Chr7g0254511 27.115 461 313 6 33 483 20 467 6.09e-37 142
Msa0095920 MtrunA17_Chr6g0468521 27.197 478 317 10 31 493 20 481 1.92e-36 141
Msa0095920 MtrunA17_Chr7g0254521 26.105 475 321 7 43 504 31 488 1.46e-34 135
Msa0095920 MtrunA17_Chr3g0132531 27.202 511 339 11 9 501 7 502 3.37e-33 132
Msa0095920 MtrunA17_Chr6g0468511 26.907 472 318 8 31 489 20 477 4.69e-33 131
Msa0095920 MtrunA17_Chr7g0254531 25.899 417 284 5 102 509 1 401 1.51e-31 125
Msa0095920 MtrunA17_Chr6g0468531 26.667 480 327 8 26 494 18 483 3.91e-31 125
Msa0095920 MtrunA17_Chr5g0412571 28.052 385 274 2 101 484 39 421 6.24e-31 124
Msa0095920 MtrunA17_Chr7g0248051 25.355 493 352 6 8 490 28 514 7.40e-31 125
Msa0095920 MtrunA17_Chr6g0460541 28.424 387 266 5 101 483 4 383 4.95e-28 115
Msa0095920 MtrunA17_Chr6g0483264 33.186 226 142 4 283 502 1 223 1.22e-24 102
Msa0095920 MtrunA17_Chr7g0254501 25.857 321 219 4 186 506 13 314 4.76e-20 90.9
Msa0095920 MtrunA17_Chr6g0483221 32.903 155 98 2 327 478 3 154 3.44e-18 82.4
Msa0095920 MtrunA17_Chr3g0132541 23.347 484 308 11 8 489 8 430 3.55e-18 87.0
Msa0095920 MtrunA17_Chr8g0364751 31.579 171 117 0 312 482 1 171 3.79e-16 76.6
Msa0095920 MtrunA17_Chr6g0483261 33.520 179 110 4 330 502 6 181 4.34e-16 76.6
Msa0095920 MtrunA17_Chr8g0364761 23.273 275 207 3 40 312 50 322 1.01e-15 78.2
Msa0095920 MtrunA17_Chr5g0440661 24.931 361 199 11 105 461 4 296 7.91e-15 75.5
Msa0095920 MtrunA17_Chr6g0460531 31.414 191 124 5 43 228 24 212 1.34e-14 73.9
Msa0095920 MtrunA17_Chr6g0483241 29.655 145 100 1 101 243 2 146 4.28e-14 70.9
Msa0095920 MtrunA17_Chr6g0460521 28.358 201 144 0 283 483 4 204 3.13e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095920 AT4G22790.1 58.873 479 195 2 16 493 3 480 0.0 564
Msa0095920 AT1G71870.1 37.895 475 278 5 35 492 15 489 2.35e-99 309
Msa0095920 AT4G29140.1 34.930 501 291 8 24 500 34 523 1.11e-95 300
Msa0095920 AT1G58340.1 39.520 458 266 3 43 495 57 508 8.95e-94 295
Msa0095920 AT5G19700.1 37.310 461 284 3 36 494 28 485 2.73e-93 293
Msa0095920 AT5G52050.1 31.703 511 332 6 11 510 1 505 2.32e-90 285
Msa0095920 AT2G38510.1 31.924 473 317 4 41 511 3 472 1.13e-83 268
Msa0095920 AT4G23030.1 36.952 479 291 5 30 502 15 488 1.23e-83 268
Msa0095920 AT5G49130.1 33.970 471 298 2 35 492 17 487 3.58e-83 267
Msa0095920 AT1G66760.2 30.608 477 324 3 18 491 2 474 2.14e-68 228
Msa0095920 AT2G04040.1 33.184 446 291 3 41 483 24 465 4.81e-68 226
Msa0095920 AT1G66760.1 30.603 464 315 3 18 478 2 461 9.93e-66 220
Msa0095920 AT5G52450.1 31.906 467 312 4 38 501 20 483 1.33e-65 220
Msa0095920 AT2G04080.1 30.454 463 315 3 24 483 7 465 2.60e-63 214
Msa0095920 AT2G34360.1 29.622 476 315 8 33 501 16 478 6.74e-63 213
Msa0095920 AT2G04070.1 30.670 463 314 3 24 483 7 465 1.55e-61 209
Msa0095920 AT1G64820.1 31.847 471 300 6 33 492 18 478 1.63e-61 210
Msa0095920 AT1G71140.1 30.131 458 312 4 29 483 12 464 2.40e-61 209
Msa0095920 AT2G04080.2 30.108 465 318 3 24 485 7 467 2.99e-61 208
Msa0095920 AT1G15150.1 29.116 498 332 5 12 502 3 486 3.20e-61 209
Msa0095920 AT1G15160.1 29.851 469 312 4 41 502 28 486 4.37e-61 208
Msa0095920 AT2G04100.1 30.562 445 304 2 41 483 27 468 6.45e-61 208
Msa0095920 AT1G66780.1 32.791 430 277 4 68 494 59 479 5.72e-60 205
Msa0095920 AT1G15170.1 31.991 447 289 4 44 483 34 472 2.03e-59 204
Msa0095920 AT1G73700.1 30.335 478 317 7 24 494 7 475 2.53e-59 203
Msa0095920 AT2G04050.1 31.780 472 306 5 21 483 1 465 7.95e-59 202
Msa0095920 AT2G04100.2 30.000 440 303 2 41 478 27 463 2.61e-58 201
Msa0095920 AT2G04090.1 29.130 460 320 3 27 483 12 468 8.26e-58 199
Msa0095920 AT1G15180.1 31.707 451 293 4 40 483 31 473 3.57e-55 192
Msa0095920 AT2G34360.2 28.361 476 279 9 33 501 16 436 4.71e-55 191
Msa0095920 AT3G23550.1 30.612 441 299 5 43 480 30 466 5.42e-52 184
Msa0095920 AT1G66760.4 30.051 396 270 3 18 410 2 393 1.85e-51 180
Msa0095920 AT1G61890.1 28.228 457 311 6 44 493 47 493 7.43e-51 181
Msa0095920 AT1G11670.1 28.188 447 306 5 44 483 50 488 7.80e-51 181
Msa0095920 AT1G61890.2 28.054 442 303 5 44 478 47 480 8.16e-49 176
Msa0095920 AT1G15170.2 30.726 358 233 4 133 483 4 353 4.24e-47 167
Msa0095920 AT1G47530.1 27.872 470 326 4 19 483 11 472 7.35e-47 170
Msa0095920 AT3G26590.1 27.975 479 324 8 33 501 28 495 6.01e-46 168
Msa0095920 AT3G21690.1 29.350 477 321 5 24 495 40 505 6.46e-46 168
Msa0095920 AT3G23560.1 29.186 442 308 3 38 477 33 471 7.71e-46 167
Msa0095920 AT1G61890.3 28.842 423 292 5 44 462 47 464 1.24e-45 166
Msa0095920 AT1G15150.2 28.912 377 251 4 133 502 4 370 4.66e-45 162
Msa0095920 AT4G21910.3 26.923 442 317 4 44 483 55 492 3.32e-44 163
Msa0095920 AT4G21910.1 26.923 442 317 4 44 483 55 492 3.32e-44 163
Msa0095920 AT1G12950.1 28.118 473 306 12 43 498 62 517 3.26e-43 160
Msa0095920 AT4G21910.2 27.088 443 315 5 44 483 57 494 6.76e-43 160
Msa0095920 AT4G21910.4 27.088 443 315 5 44 483 57 494 6.76e-43 160
Msa0095920 AT5G38030.1 27.292 469 328 5 24 483 18 482 1.04e-41 156
Msa0095920 AT3G26590.2 28.321 399 275 4 105 501 4 393 8.65e-41 151
Msa0095920 AT4G00350.1 24.440 491 341 5 11 483 46 524 1.10e-40 154
Msa0095920 AT4G21903.1 26.812 414 297 4 72 483 81 490 8.55e-40 151
Msa0095920 AT5G10420.1 28.540 452 305 6 54 499 48 487 8.95e-40 150
Msa0095920 AT5G44050.1 28.918 453 307 7 46 493 46 488 4.13e-39 149
Msa0095920 AT1G23300.1 26.793 474 323 8 51 510 51 514 2.03e-38 147
Msa0095920 AT4G21903.2 26.506 415 299 4 72 484 81 491 4.16e-38 146
Msa0095920 AT3G23560.2 30.058 346 237 3 38 381 33 375 1.37e-37 143
Msa0095920 AT4G21903.3 27.034 381 273 3 105 483 4 381 6.05e-37 141
Msa0095920 AT3G59030.1 24.658 511 366 8 1 501 1 502 9.42e-37 142
Msa0095920 AT5G65380.1 27.273 462 323 6 28 483 21 475 2.53e-36 141
Msa0095920 AT1G47530.2 27.604 384 266 3 105 483 4 380 1.48e-35 137
Msa0095920 AT4G25640.1 25.630 476 331 5 21 481 1 468 2.50e-34 135
Msa0095920 AT4G25640.2 25.630 476 331 5 21 481 1 468 3.12e-34 135
Msa0095920 AT1G33100.1 27.982 436 304 5 51 482 40 469 6.29e-34 134
Msa0095920 AT1G33110.1 28.959 442 292 6 51 482 43 472 3.66e-33 132
Msa0095920 AT1G33090.1 27.412 456 305 7 41 482 29 472 6.29e-33 131
Msa0095920 AT1G66760.3 27.893 337 236 3 145 478 1 333 2.32e-32 127
Msa0095920 AT4G25640.3 25.450 444 308 5 21 449 1 436 3.91e-31 126
Msa0095920 AT5G17700.2 25.758 462 312 9 43 492 33 475 4.31e-31 126
Msa0095920 AT5G17700.1 25.758 462 312 9 43 492 33 475 4.31e-31 126
Msa0095920 AT3G03620.2 26.190 462 323 7 28 481 21 472 5.75e-31 126
Msa0095920 AT3G03620.1 26.190 462 323 7 28 481 21 472 5.75e-31 126
Msa0095920 AT1G15180.2 29.779 272 176 4 133 397 4 267 8.60e-30 121
Msa0095920 AT1G33080.2 26.126 444 310 6 51 486 43 476 4.57e-29 120
Msa0095920 AT1G33080.1 25.909 440 308 6 51 482 43 472 2.46e-28 118
Msa0095920 AT3G59030.2 24.515 412 297 7 1 402 1 408 1.92e-23 103
Msa0095920 AT1G33110.2 30.055 366 226 8 51 402 43 392 2.26e-23 102
Msa0095920 AT5G17700.3 26.075 372 249 8 43 402 33 390 5.11e-21 95.5

Find 124 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGCTGCAAGGGGAATTT+GGG 0.166621 1_3:+1359612 Msa0095920:CDS
CTCTTCTTTGGACTTCTTAC+TGG 0.194547 1_3:+1359862 Msa0095920:CDS
GGCCTTGTTGGACTCTTCTT+TGG 0.195245 1_3:+1359850 Msa0095920:CDS
CTTCCTACCATGTTTAGTTC+TGG 0.202562 1_3:+1359094 Msa0095920:CDS
TTCACTTTCGCTAACGTTAC+TGG 0.209280 1_3:+1358773 Msa0095920:CDS
TGGTGGCTGCAAGGGGAATT+TGG 0.224291 1_3:+1359611 Msa0095920:CDS
TCTTATTGTTGTTGTTCTTC+TGG 0.235360 1_3:+1359207 Msa0095920:CDS
AGCTTAGCCGGTGGCGCGCT+CGG 0.247230 1_3:+1358749 Msa0095920:CDS
ATGTCATCAACATGCAAATT+AGG 0.269692 1_3:+1358512 Msa0095920:CDS
GAAATTCTAGTCTTGCTTAC+TGG 0.273403 1_3:+1359376 Msa0095920:CDS
CTCTAGAATTAAAACATAAA+TGG 0.277546 1_3:-1359230 None:intergenic
TTCCTACCATGTTTAGTTCT+GGG 0.312277 1_3:+1359095 Msa0095920:CDS
TGAAGCCACATGAAAGTAAT+AGG 0.326554 1_3:-1358926 None:intergenic
CATGATAGGGGCACTATAAA+TGG 0.328539 1_3:+1359649 Msa0095920:CDS
AAGCTTCGTCTTGGCCTTGT+TGG 0.336381 1_3:+1359838 Msa0095920:CDS
CAAGAAATTTCCACTGTTGC+TGG 0.340485 1_3:+1358983 Msa0095920:CDS
TTTGAGAGTAGTATGTTAAC+AGG 0.351355 1_3:-1359139 None:intergenic
CCATGAGCCTGTCCACAAAT+AGG 0.351874 1_3:-1358833 None:intergenic
CACAGGGAACTTCTTTAACT+TGG 0.357675 1_3:-1359978 None:intergenic
GACAATTGTATTGTTGCTAT+TGG 0.359414 1_3:+1358895 Msa0095920:CDS
GCTTAGCCGGTGGCGCGCTC+GGG 0.363500 1_3:+1358750 Msa0095920:CDS
AGAGTATTATGGATTGGATT+AGG 0.376619 1_3:+1359296 Msa0095920:CDS
TGCTGTTGTGATTGCTGTCT+TGG 0.380543 1_3:-1358702 None:intergenic
CAGTGGAAATTTCTTGTTGT+TGG 0.381992 1_3:-1358976 None:intergenic
TTTCTCAGTGATGCTGTCAT+TGG 0.384106 1_3:+1359465 Msa0095920:CDS
GAGGGGTTTCCATGGCTGTT+TGG 0.394339 1_3:+1359176 Msa0095920:CDS
ATTAGGCTAATCAAGCTATC+TGG 0.398009 1_3:+1359313 Msa0095920:CDS
GGCAACTCTTCAGCCATGAT+AGG 0.398212 1_3:+1359635 Msa0095920:CDS
GTGGCTGCAAGGGGAATTTG+GGG 0.399284 1_3:+1359613 Msa0095920:CDS
TCAGAGGAGCTAAGAGTTCA+AGG 0.400477 1_3:+1358635 Msa0095920:CDS
ACTGGCTTCTCTGTCTTGAA+TGG 0.406137 1_3:+1358791 Msa0095920:CDS
CGCAGGTTGCACCGGCAGCT+TGG 0.414906 1_3:+1359585 Msa0095920:CDS
GCTTGGTGATGGTGGCTGCA+AGG 0.424849 1_3:+1359602 Msa0095920:CDS
CGCAAACGCCAAGCAAGCAT+TGG 0.427319 1_3:+1359405 Msa0095920:CDS
CGCCAAGCTCGTTTGAGACA+CGG 0.430905 1_3:-1359504 None:intergenic
CTTGGTGATGGTGGCTGCAA+GGG 0.432045 1_3:+1359603 Msa0095920:CDS
TATTATTAGTATTCATTGCT+AGG 0.432752 1_3:+1359905 Msa0095920:CDS
GCACGTGTGTCTCTAGGAAT+AGG 0.444169 1_3:+1359556 Msa0095920:CDS
AGGGACAGCTCGACCTTGGT+TGG 0.445218 1_3:+1359750 Msa0095920:CDS
TGGTACTTCTGCGTCATCAC+AGG 0.449230 1_3:-1359995 None:intergenic
TTTGCCTTCAAGCTTCGTCT+TGG 0.451622 1_3:+1359829 Msa0095920:CDS
CATTTATAGTGCCCCTATCA+TGG 0.457544 1_3:-1359648 None:intergenic
ACCGGTACGCTCGGTCGGCT+TGG 0.459703 1_3:-1359531 None:intergenic
TAAAACTCCCAATGCTTGCT+TGG 0.462126 1_3:-1359413 None:intergenic
TCTAGAGAATCGAAAGGTAT+TGG 0.462933 1_3:+1359246 Msa0095920:CDS
ACTTGCTAATATTTGTGCCT+TGG 0.463290 1_3:-1359950 None:intergenic
TCTGAAAGCAGCGTCTTCGC+TGG 0.467091 1_3:-1358617 None:intergenic
TTGGGTATGTATGCAAATCT+AGG 0.477841 1_3:+1359769 Msa0095920:CDS
CGTGGAAAGAAGGAGGATGG+TGG 0.478669 1_3:+1359269 Msa0095920:CDS
ATGGTGGGATCAGAGTATTA+TGG 0.479182 1_3:+1359285 Msa0095920:CDS
CTAGGTGAGCTCAGCTTAGC+CGG 0.481845 1_3:+1358737 Msa0095920:CDS
GCTAAATTCATCAACACCAT+TGG 0.482192 1_3:-1358671 None:intergenic
GCAACTCTTCAGCCATGATA+GGG 0.483823 1_3:+1359636 Msa0095920:CDS
AGTGACATAACAAACAAATC+AGG 0.486224 1_3:-1359028 None:intergenic
GAATGGTCTCTGTGGTGCCA+TGG 0.486890 1_3:+1358808 Msa0095920:CDS
TTGTTGTCTCAACACATGTA+TGG 0.488430 1_3:+1359339 Msa0095920:CDS
GGGACAGCTCGACCTTGGTT+GGG 0.495004 1_3:+1359751 Msa0095920:CDS
GGGATCAGAGTATTATGGAT+TGG 0.495416 1_3:+1359290 Msa0095920:CDS
TCCTACCATGTTTAGTTCTG+GGG 0.499436 1_3:+1359096 Msa0095920:CDS
ACCCGTGTCTCAAACGAGCT+TGG 0.500843 1_3:+1359502 Msa0095920:CDS
CCTATTTGTGGACAGGCTCA+TGG 0.501376 1_3:+1358833 Msa0095920:CDS
TATTCATTGCTAGGATAAAG+TGG 0.503924 1_3:+1359914 Msa0095920:CDS
CGGTCAGCACGTGTGTCTCT+AGG 0.507994 1_3:+1359550 Msa0095920:CDS
AAGGCCAAGACGAAGCTTGA+AGG 0.508427 1_3:-1359833 None:intergenic
GGGTCTAAGAGGGGTTTCCA+TGG 0.510224 1_3:+1359168 Msa0095920:CDS
GCCAAGCTCGTTTGAGACAC+GGG 0.510977 1_3:-1359503 None:intergenic
AGTGAACCCGAGCGCGCCAC+CGG 0.515331 1_3:-1358756 None:intergenic
AAGGTATTGGCGTGGAAAGA+AGG 0.518806 1_3:+1359259 Msa0095920:CDS
GCAAACGCCAAGCAAGCATT+GGG 0.519010 1_3:+1359406 Msa0095920:CDS
AGCCACCATCACCAAGCTGC+CGG 0.520002 1_3:-1359596 None:intergenic
CGGGTCTGTAATGGTGGAGG+AGG 0.520121 1_3:-1358578 None:intergenic
CATGGAACCTATTTGTGGAC+AGG 0.523239 1_3:+1358826 Msa0095920:CDS
TTGCACCGGCAGCTTGGTGA+TGG 0.528564 1_3:+1359591 Msa0095920:CDS
GTGGAGGAGGTGACATTGGT+TGG 0.531112 1_3:-1358565 None:intergenic
TTCGAGGGACAGCTCGACCT+TGG 0.533695 1_3:+1359746 Msa0095920:CDS
CACCGGCAGCTTGGTGATGG+TGG 0.540745 1_3:+1359594 Msa0095920:CDS
AGCGAAGACGCTGCTTTCAG+AGG 0.548362 1_3:+1358619 Msa0095920:CDS
GTTTGTGGAGGCATAGTTCG+AGG 0.549958 1_3:+1359730 Msa0095920:CDS
ATGCCTCCACAAACTGCCAA+TGG 0.550253 1_3:-1359721 None:intergenic
ATCAGTTATCCAAACAGCCA+TGG 0.552397 1_3:-1359185 None:intergenic
TGGCGTGGAAAGAAGGAGGA+TGG 0.552982 1_3:+1359266 Msa0095920:CDS
CACGTGCTGACCGGTACGCT+CGG 0.555036 1_3:-1359540 None:intergenic
CTAGAGACACACGTGCTGAC+CGG 0.558867 1_3:-1359549 None:intergenic
AATGTTGTTGATGGCTCTAG+TGG 0.559949 1_3:+1359684 Msa0095920:CDS
TTTCGGGTCTGTAATGGTGG+AGG 0.563765 1_3:-1358581 None:intergenic
GTATGTATGCAAATCTAGGC+GGG 0.568375 1_3:+1359773 Msa0095920:CDS
CTTGCTTGGCGTTTGCGAGG+TGG 0.568986 1_3:-1359399 None:intergenic
GGTGCCATGGAACCTATTTG+TGG 0.570180 1_3:+1358821 Msa0095920:CDS
GTGGAAAGAAGGAGGATGGT+GGG 0.570875 1_3:+1359270 Msa0095920:CDS
CTGTCCACAAATAGGTTCCA+TGG 0.574641 1_3:-1358825 None:intergenic
CAATTCCTATTACTTTCATG+TGG 0.579908 1_3:+1358921 Msa0095920:CDS
ACCAAGCCGACCGAGCGTAC+CGG 0.581822 1_3:+1359530 Msa0095920:CDS
GGAAACCCCTCTTAGACCCA+TGG 0.585351 1_3:-1359164 None:intergenic
TTTCCATTGGCAGTTTGTGG+AGG 0.586502 1_3:+1359718 Msa0095920:CDS
TGGCTGCAAGGGGAATTTGG+GGG 0.591531 1_3:+1359614 Msa0095920:CDS
TGGTGTTGATGAATTTAGCT+TGG 0.591762 1_3:+1358675 Msa0095920:CDS
AACATAAGTACCAGCAACAG+TGG 0.598946 1_3:-1358993 None:intergenic
GTGGGTGGAAGAAGCTGCCA+AGG 0.602858 1_3:+1359933 Msa0095920:CDS
TTGGTGATGGTGGCTGCAAG+GGG 0.610161 1_3:+1359604 Msa0095920:CDS
ATGCTTGCTTGGCGTTTGCG+AGG 0.612886 1_3:-1359402 None:intergenic
TGCTGACCGGTACGCTCGGT+CGG 0.613523 1_3:-1359536 None:intergenic
TTTAATTCTAGAGAATCGAA+AGG 0.625448 1_3:+1359240 Msa0095920:CDS
GGTACTTCTGCGTCATCACA+GGG 0.629425 1_3:-1359994 None:intergenic
GTATTGGCGTGGAAAGAAGG+AGG 0.632332 1_3:+1359262 Msa0095920:CDS
ATTCATTGCTAGGATAAAGT+GGG 0.633439 1_3:+1359915 Msa0095920:CDS
CAACTCTTCAGCCATGATAG+GGG 0.633765 1_3:+1359637 Msa0095920:CDS
AATGGTGGAGGAGGTGACAT+TGG 0.637951 1_3:-1358569 None:intergenic
GGTGAGCTCAGCTTAGCCGG+TGG 0.638224 1_3:+1358740 Msa0095920:CDS
TTTGTGGAGGCATAGTTCGA+GGG 0.638241 1_3:+1359731 Msa0095920:CDS
GACACGGGTGGAAACACAAG+TGG 0.646609 1_3:-1359488 None:intergenic
GTCCAAAGAAGAGTCCAACA+AGG 0.652628 1_3:-1359852 None:intergenic
CATTGCTAGGATAAAGTGGG+TGG 0.653404 1_3:+1359918 Msa0095920:CDS
TCTGTCTTGAATGGTCTCTG+TGG 0.655881 1_3:+1358800 Msa0095920:CDS
AGAATCGAAAGGTATTGGCG+TGG 0.660271 1_3:+1359251 Msa0095920:CDS
TCAACACATGTATGGAGTGG+TGG 0.666907 1_3:+1359347 Msa0095920:CDS
TCATGAGAAGTGTCTTGTGA+AGG 0.670945 1_3:-1358874 None:intergenic
TGCTACCCCAGAACTAAACA+TGG 0.676669 1_3:-1359101 None:intergenic
ATAGTCAAAGTTCAACACAA+TGG 0.680940 1_3:-1359437 None:intergenic
ACCCCAGAACTAAACATGGT+AGG 0.687373 1_3:-1359097 None:intergenic
GTCTCAACACATGTATGGAG+TGG 0.690627 1_3:+1359344 Msa0095920:CDS
AAGCTCGTTTGAGACACGGG+TGG 0.702539 1_3:-1359500 None:intergenic
GGTATGTATGCAAATCTAGG+CGG 0.704766 1_3:+1359772 Msa0095920:CDS
TGACGCAGAAGTACCAACTG+AGG 0.735542 1_3:+1360002 Msa0095920:CDS
TTTGCATACATACCCAACCA+AGG 0.735927 1_3:-1359763 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GACAAAATTTTGATTCATTT+TGG + chr1_3:1358953-1358972 Msa0095920:CDS 20.0%
!!! CTCTAGAATTAAAACATAAA+TGG - chr1_3:1359233-1359252 None:intergenic 20.0%
!! TATTATTAGTATTCATTGCT+AGG + chr1_3:1359905-1359924 Msa0095920:CDS 20.0%
!!! GACAAAATTTTGATTCATTT+TGG + chr1_3:1358953-1358972 Msa0095920:CDS 20.0%
!!! CTCTAGAATTAAAACATAAA+TGG - chr1_3:1359233-1359252 None:intergenic 20.0%
!! TATTATTAGTATTCATTGCT+AGG + chr1_3:1359905-1359924 Msa0095920:CDS 20.0%
!! TTTAATTCTAGAGAATCGAA+AGG + chr1_3:1359240-1359259 Msa0095920:CDS 25.0%
! AAAAAAGACAATGTTGTTGA+TGG + chr1_3:1359675-1359694 Msa0095920:CDS 25.0%
!! TTTAATTCTAGAGAATCGAA+AGG + chr1_3:1359240-1359259 Msa0095920:CDS 25.0%
! AAAAAAGACAATGTTGTTGA+TGG + chr1_3:1359675-1359694 Msa0095920:CDS 25.0%
ATGTCATCAACATGCAAATT+AGG + chr1_3:1358512-1358531 Msa0095920:CDS 30.0%
!!! TAGTTTTATGGTTTGAGCTA+AGG - chr1_3:1358544-1358563 None:intergenic 30.0%
!!! ACATTGGTTGGTTAGTTTTA+TGG - chr1_3:1358556-1358575 None:intergenic 30.0%
GACAATTGTATTGTTGCTAT+TGG + chr1_3:1358895-1358914 Msa0095920:CDS 30.0%
CAATTCCTATTACTTTCATG+TGG + chr1_3:1358921-1358940 Msa0095920:CDS 30.0%
AGTGACATAACAAACAAATC+AGG - chr1_3:1359031-1359050 None:intergenic 30.0%
TTTGAGAGTAGTATGTTAAC+AGG - chr1_3:1359142-1359161 None:intergenic 30.0%
ATACTACTCTCAAAAACCAT+GGG + chr1_3:1359148-1359167 Msa0095920:CDS 30.0%
! TCTTATTGTTGTTGTTCTTC+TGG + chr1_3:1359207-1359226 Msa0095920:CDS 30.0%
!! AGAGTATTATGGATTGGATT+AGG + chr1_3:1359296-1359315 Msa0095920:CDS 30.0%
ATAGTCAAAGTTCAACACAA+TGG - chr1_3:1359440-1359459 None:intergenic 30.0%
!! GGAGTTGTTTAATTTTCCAT+TGG + chr1_3:1359705-1359724 Msa0095920:CDS 30.0%
TATTCATTGCTAGGATAAAG+TGG + chr1_3:1359914-1359933 Msa0095920:CDS 30.0%
ATTCATTGCTAGGATAAAGT+GGG + chr1_3:1359915-1359934 Msa0095920:CDS 30.0%
ATGTCATCAACATGCAAATT+AGG + chr1_3:1358512-1358531 Msa0095920:CDS 30.0%
!!! TAGTTTTATGGTTTGAGCTA+AGG - chr1_3:1358544-1358563 None:intergenic 30.0%
!!! ACATTGGTTGGTTAGTTTTA+TGG - chr1_3:1358556-1358575 None:intergenic 30.0%
GACAATTGTATTGTTGCTAT+TGG + chr1_3:1358895-1358914 Msa0095920:CDS 30.0%
CAATTCCTATTACTTTCATG+TGG + chr1_3:1358921-1358940 Msa0095920:CDS 30.0%
AGTGACATAACAAACAAATC+AGG - chr1_3:1359031-1359050 None:intergenic 30.0%
TTTGAGAGTAGTATGTTAAC+AGG - chr1_3:1359142-1359161 None:intergenic 30.0%
ATACTACTCTCAAAAACCAT+GGG + chr1_3:1359148-1359167 Msa0095920:CDS 30.0%
! TCTTATTGTTGTTGTTCTTC+TGG + chr1_3:1359207-1359226 Msa0095920:CDS 30.0%
!! AGAGTATTATGGATTGGATT+AGG + chr1_3:1359296-1359315 Msa0095920:CDS 30.0%
ATAGTCAAAGTTCAACACAA+TGG - chr1_3:1359440-1359459 None:intergenic 30.0%
!! GGAGTTGTTTAATTTTCCAT+TGG + chr1_3:1359705-1359724 Msa0095920:CDS 30.0%
TATTCATTGCTAGGATAAAG+TGG + chr1_3:1359914-1359933 Msa0095920:CDS 30.0%
ATTCATTGCTAGGATAAAGT+GGG + chr1_3:1359915-1359934 Msa0095920:CDS 30.0%
!!! AGGAAGATTAGCTTTTCCAA+TGG + chr1_3:1358655-1358674 Msa0095920:CDS 35.0%
GCTAAATTCATCAACACCAT+TGG - chr1_3:1358674-1358693 None:intergenic 35.0%
!! TGGTGTTGATGAATTTAGCT+TGG + chr1_3:1358675-1358694 Msa0095920:CDS 35.0%
! AGCAATCACAACAGCATTTT+TGG + chr1_3:1358709-1358728 Msa0095920:CDS 35.0%
! GCAATCACAACAGCATTTTT+GGG + chr1_3:1358710-1358729 Msa0095920:CDS 35.0%
TGAAGCCACATGAAAGTAAT+AGG - chr1_3:1358929-1358948 None:intergenic 35.0%
! CAGTGGAAATTTCTTGTTGT+TGG - chr1_3:1358979-1358998 None:intergenic 35.0%
! GAGCTCAAGTAAGCTTTTAA+GGG - chr1_3:1359061-1359080 None:intergenic 35.0%
! AGAGCTCAAGTAAGCTTTTA+AGG - chr1_3:1359062-1359081 None:intergenic 35.0%
!! TTCCTACCATGTTTAGTTCT+GGG + chr1_3:1359095-1359114 Msa0095920:CDS 35.0%
CATACTACTCTCAAAAACCA+TGG + chr1_3:1359147-1359166 Msa0095920:CDS 35.0%
! TCTAGAGAATCGAAAGGTAT+TGG + chr1_3:1359246-1359265 Msa0095920:CDS 35.0%
ATTAGGCTAATCAAGCTATC+TGG + chr1_3:1359313-1359332 Msa0095920:CDS 35.0%
TTGTTGTCTCAACACATGTA+TGG + chr1_3:1359339-1359358 Msa0095920:CDS 35.0%
!! GAAATTCTAGTCTTGCTTAC+TGG + chr1_3:1359376-1359395 Msa0095920:CDS 35.0%
! AATTTTCCATTGGCAGTTTG+TGG + chr1_3:1359715-1359734 Msa0095920:CDS 35.0%
TTGGGTATGTATGCAAATCT+AGG + chr1_3:1359769-1359788 Msa0095920:CDS 35.0%
! ACTTGCTAATATTTGTGCCT+TGG - chr1_3:1359953-1359972 None:intergenic 35.0%
!!! AGGAAGATTAGCTTTTCCAA+TGG + chr1_3:1358655-1358674 Msa0095920:CDS 35.0%
GCTAAATTCATCAACACCAT+TGG - chr1_3:1358674-1358693 None:intergenic 35.0%
!! TGGTGTTGATGAATTTAGCT+TGG + chr1_3:1358675-1358694 Msa0095920:CDS 35.0%
! AGCAATCACAACAGCATTTT+TGG + chr1_3:1358709-1358728 Msa0095920:CDS 35.0%
! GCAATCACAACAGCATTTTT+GGG + chr1_3:1358710-1358729 Msa0095920:CDS 35.0%
TGAAGCCACATGAAAGTAAT+AGG - chr1_3:1358929-1358948 None:intergenic 35.0%
! CAGTGGAAATTTCTTGTTGT+TGG - chr1_3:1358979-1358998 None:intergenic 35.0%
! GAGCTCAAGTAAGCTTTTAA+GGG - chr1_3:1359061-1359080 None:intergenic 35.0%
! AGAGCTCAAGTAAGCTTTTA+AGG - chr1_3:1359062-1359081 None:intergenic 35.0%
!! TTCCTACCATGTTTAGTTCT+GGG + chr1_3:1359095-1359114 Msa0095920:CDS 35.0%
CATACTACTCTCAAAAACCA+TGG + chr1_3:1359147-1359166 Msa0095920:CDS 35.0%
! TCTAGAGAATCGAAAGGTAT+TGG + chr1_3:1359246-1359265 Msa0095920:CDS 35.0%
ATTAGGCTAATCAAGCTATC+TGG + chr1_3:1359313-1359332 Msa0095920:CDS 35.0%
TTGTTGTCTCAACACATGTA+TGG + chr1_3:1359339-1359358 Msa0095920:CDS 35.0%
!! GAAATTCTAGTCTTGCTTAC+TGG + chr1_3:1359376-1359395 Msa0095920:CDS 35.0%
! AATTTTCCATTGGCAGTTTG+TGG + chr1_3:1359715-1359734 Msa0095920:CDS 35.0%
TTGGGTATGTATGCAAATCT+AGG + chr1_3:1359769-1359788 Msa0095920:CDS 35.0%
! ACTTGCTAATATTTGTGCCT+TGG - chr1_3:1359953-1359972 None:intergenic 35.0%
!!! TCACATTTTCGGGTCTGTAA+TGG - chr1_3:1358590-1358609 None:intergenic 40.0%
! TGGATTTGCGTCACATTTTC+GGG - chr1_3:1358600-1358619 None:intergenic 40.0%
! CTGGATTTGCGTCACATTTT+CGG - chr1_3:1358601-1358620 None:intergenic 40.0%
TTCACTTTCGCTAACGTTAC+TGG + chr1_3:1358773-1358792 Msa0095920:CDS 40.0%
!! TCATGAGAAGTGTCTTGTGA+AGG - chr1_3:1358877-1358896 None:intergenic 40.0%
CAAGAAATTTCCACTGTTGC+TGG + chr1_3:1358983-1359002 Msa0095920:CDS 40.0%
AACATAAGTACCAGCAACAG+TGG - chr1_3:1358996-1359015 None:intergenic 40.0%
! CTTCCTACCATGTTTAGTTC+TGG + chr1_3:1359094-1359113 Msa0095920:CDS 40.0%
!! TCCTACCATGTTTAGTTCTG+GGG + chr1_3:1359096-1359115 Msa0095920:CDS 40.0%
TCAAAAACCATGGGTCTAAG+AGG + chr1_3:1359157-1359176 Msa0095920:CDS 40.0%
CAAAAACCATGGGTCTAAGA+GGG + chr1_3:1359158-1359177 Msa0095920:CDS 40.0%
AAAAACCATGGGTCTAAGAG+GGG + chr1_3:1359159-1359178 Msa0095920:CDS 40.0%
ATCAGTTATCCAAACAGCCA+TGG - chr1_3:1359188-1359207 None:intergenic 40.0%
! ATGGTGGGATCAGAGTATTA+TGG + chr1_3:1359285-1359304 Msa0095920:CDS 40.0%
! GGGATCAGAGTATTATGGAT+TGG + chr1_3:1359290-1359309 Msa0095920:CDS 40.0%
TAAAACTCCCAATGCTTGCT+TGG - chr1_3:1359416-1359435 None:intergenic 40.0%
TTTCTCAGTGATGCTGTCAT+TGG + chr1_3:1359465-1359484 Msa0095920:CDS 40.0%
!! CTAGGAATAGGTTTTATCGC+AGG + chr1_3:1359568-1359587 Msa0095920:CDS 40.0%
CATTTATAGTGCCCCTATCA+TGG - chr1_3:1359651-1359670 None:intergenic 40.0%
!! CATGATAGGGGCACTATAAA+TGG + chr1_3:1359649-1359668 Msa0095920:CDS 40.0%
!! AATGTTGTTGATGGCTCTAG+TGG + chr1_3:1359684-1359703 Msa0095920:CDS 40.0%
TTTGCATACATACCCAACCA+AGG - chr1_3:1359766-1359785 None:intergenic 40.0%
GGTATGTATGCAAATCTAGG+CGG + chr1_3:1359772-1359791 Msa0095920:CDS 40.0%
GTATGTATGCAAATCTAGGC+GGG + chr1_3:1359773-1359792 Msa0095920:CDS 40.0%
!!! TCTAGGCGGGTTTTATTTTC+TGG + chr1_3:1359786-1359805 Msa0095920:CDS 40.0%
AAGGCAAAAACAACACCAAG+GGG - chr1_3:1359817-1359836 None:intergenic 40.0%
GAAGGCAAAAACAACACCAA+GGG - chr1_3:1359818-1359837 None:intergenic 40.0%
TGAAGGCAAAAACAACACCA+AGG - chr1_3:1359819-1359838 None:intergenic 40.0%
CTCTTCTTTGGACTTCTTAC+TGG + chr1_3:1359862-1359881 Msa0095920:CDS 40.0%
CACAGGGAACTTCTTTAACT+TGG - chr1_3:1359981-1360000 None:intergenic 40.0%
!!! TCACATTTTCGGGTCTGTAA+TGG - chr1_3:1358590-1358609 None:intergenic 40.0%
! TGGATTTGCGTCACATTTTC+GGG - chr1_3:1358600-1358619 None:intergenic 40.0%
! CTGGATTTGCGTCACATTTT+CGG - chr1_3:1358601-1358620 None:intergenic 40.0%
TTCACTTTCGCTAACGTTAC+TGG + chr1_3:1358773-1358792 Msa0095920:CDS 40.0%
!! TCATGAGAAGTGTCTTGTGA+AGG - chr1_3:1358877-1358896 None:intergenic 40.0%
CAAGAAATTTCCACTGTTGC+TGG + chr1_3:1358983-1359002 Msa0095920:CDS 40.0%
AACATAAGTACCAGCAACAG+TGG - chr1_3:1358996-1359015 None:intergenic 40.0%
! CTTCCTACCATGTTTAGTTC+TGG + chr1_3:1359094-1359113 Msa0095920:CDS 40.0%
!! TCCTACCATGTTTAGTTCTG+GGG + chr1_3:1359096-1359115 Msa0095920:CDS 40.0%
TCAAAAACCATGGGTCTAAG+AGG + chr1_3:1359157-1359176 Msa0095920:CDS 40.0%
CAAAAACCATGGGTCTAAGA+GGG + chr1_3:1359158-1359177 Msa0095920:CDS 40.0%
AAAAACCATGGGTCTAAGAG+GGG + chr1_3:1359159-1359178 Msa0095920:CDS 40.0%
ATCAGTTATCCAAACAGCCA+TGG - chr1_3:1359188-1359207 None:intergenic 40.0%
! ATGGTGGGATCAGAGTATTA+TGG + chr1_3:1359285-1359304 Msa0095920:CDS 40.0%
! GGGATCAGAGTATTATGGAT+TGG + chr1_3:1359290-1359309 Msa0095920:CDS 40.0%
TAAAACTCCCAATGCTTGCT+TGG - chr1_3:1359416-1359435 None:intergenic 40.0%
TTTCTCAGTGATGCTGTCAT+TGG + chr1_3:1359465-1359484 Msa0095920:CDS 40.0%
!! CTAGGAATAGGTTTTATCGC+AGG + chr1_3:1359568-1359587 Msa0095920:CDS 40.0%
CATTTATAGTGCCCCTATCA+TGG - chr1_3:1359651-1359670 None:intergenic 40.0%
!! CATGATAGGGGCACTATAAA+TGG + chr1_3:1359649-1359668 Msa0095920:CDS 40.0%
!! AATGTTGTTGATGGCTCTAG+TGG + chr1_3:1359684-1359703 Msa0095920:CDS 40.0%
TTTGCATACATACCCAACCA+AGG - chr1_3:1359766-1359785 None:intergenic 40.0%
GGTATGTATGCAAATCTAGG+CGG + chr1_3:1359772-1359791 Msa0095920:CDS 40.0%
GTATGTATGCAAATCTAGGC+GGG + chr1_3:1359773-1359792 Msa0095920:CDS 40.0%
!!! TCTAGGCGGGTTTTATTTTC+TGG + chr1_3:1359786-1359805 Msa0095920:CDS 40.0%
AAGGCAAAAACAACACCAAG+GGG - chr1_3:1359817-1359836 None:intergenic 40.0%
GAAGGCAAAAACAACACCAA+GGG - chr1_3:1359818-1359837 None:intergenic 40.0%
TGAAGGCAAAAACAACACCA+AGG - chr1_3:1359819-1359838 None:intergenic 40.0%
CTCTTCTTTGGACTTCTTAC+TGG + chr1_3:1359862-1359881 Msa0095920:CDS 40.0%
CACAGGGAACTTCTTTAACT+TGG - chr1_3:1359981-1360000 None:intergenic 40.0%
!!! CATTTTCGGGTCTGTAATGG+TGG - chr1_3:1358587-1358606 None:intergenic 45.0%
TCAGAGGAGCTAAGAGTTCA+AGG + chr1_3:1358635-1358654 Msa0095920:CDS 45.0%
TGCTGTTGTGATTGCTGTCT+TGG - chr1_3:1358705-1358724 None:intergenic 45.0%
!!! ACAGCATTTTTGGGTCGACT+AGG + chr1_3:1358719-1358738 Msa0095920:CDS 45.0%
! ACTGGCTTCTCTGTCTTGAA+TGG + chr1_3:1358791-1358810 Msa0095920:CDS 45.0%
TCTGTCTTGAATGGTCTCTG+TGG + chr1_3:1358800-1358819 Msa0095920:CDS 45.0%
CTGTCCACAAATAGGTTCCA+TGG - chr1_3:1358828-1358847 None:intergenic 45.0%
CATGGAACCTATTTGTGGAC+AGG + chr1_3:1358826-1358845 Msa0095920:CDS 45.0%
ACCCCAGAACTAAACATGGT+AGG - chr1_3:1359100-1359119 None:intergenic 45.0%
TGCTACCCCAGAACTAAACA+TGG - chr1_3:1359104-1359123 None:intergenic 45.0%
!! AGAATCGAAAGGTATTGGCG+TGG + chr1_3:1359251-1359270 Msa0095920:CDS 45.0%
!! AAGGTATTGGCGTGGAAAGA+AGG + chr1_3:1359259-1359278 Msa0095920:CDS 45.0%
GTCTCAACACATGTATGGAG+TGG + chr1_3:1359344-1359363 Msa0095920:CDS 45.0%
TCAACACATGTATGGAGTGG+TGG + chr1_3:1359347-1359366 Msa0095920:CDS 45.0%
GCAACTCTTCAGCCATGATA+GGG + chr1_3:1359636-1359655 Msa0095920:CDS 45.0%
CAACTCTTCAGCCATGATAG+GGG + chr1_3:1359637-1359656 Msa0095920:CDS 45.0%
TTTCCATTGGCAGTTTGTGG+AGG + chr1_3:1359718-1359737 Msa0095920:CDS 45.0%
! TTTGTGGAGGCATAGTTCGA+GGG + chr1_3:1359731-1359750 Msa0095920:CDS 45.0%
TTTGCCTTCAAGCTTCGTCT+TGG + chr1_3:1359829-1359848 Msa0095920:CDS 45.0%
GTCCAAAGAAGAGTCCAACA+AGG - chr1_3:1359855-1359874 None:intergenic 45.0%
CATTGCTAGGATAAAGTGGG+TGG + chr1_3:1359918-1359937 Msa0095920:CDS 45.0%
! TCATTTTCACGAGCCTCAGT+TGG - chr1_3:1360018-1360037 None:intergenic 45.0%
!!! CATTTTCGGGTCTGTAATGG+TGG - chr1_3:1358587-1358606 None:intergenic 45.0%
TCAGAGGAGCTAAGAGTTCA+AGG + chr1_3:1358635-1358654 Msa0095920:CDS 45.0%
TGCTGTTGTGATTGCTGTCT+TGG - chr1_3:1358705-1358724 None:intergenic 45.0%
!!! ACAGCATTTTTGGGTCGACT+AGG + chr1_3:1358719-1358738 Msa0095920:CDS 45.0%
! ACTGGCTTCTCTGTCTTGAA+TGG + chr1_3:1358791-1358810 Msa0095920:CDS 45.0%
TCTGTCTTGAATGGTCTCTG+TGG + chr1_3:1358800-1358819 Msa0095920:CDS 45.0%
CTGTCCACAAATAGGTTCCA+TGG - chr1_3:1358828-1358847 None:intergenic 45.0%
CATGGAACCTATTTGTGGAC+AGG + chr1_3:1358826-1358845 Msa0095920:CDS 45.0%
ACCCCAGAACTAAACATGGT+AGG - chr1_3:1359100-1359119 None:intergenic 45.0%
TGCTACCCCAGAACTAAACA+TGG - chr1_3:1359104-1359123 None:intergenic 45.0%
!! AGAATCGAAAGGTATTGGCG+TGG + chr1_3:1359251-1359270 Msa0095920:CDS 45.0%
!! AAGGTATTGGCGTGGAAAGA+AGG + chr1_3:1359259-1359278 Msa0095920:CDS 45.0%
GTCTCAACACATGTATGGAG+TGG + chr1_3:1359344-1359363 Msa0095920:CDS 45.0%
TCAACACATGTATGGAGTGG+TGG + chr1_3:1359347-1359366 Msa0095920:CDS 45.0%
GCAACTCTTCAGCCATGATA+GGG + chr1_3:1359636-1359655 Msa0095920:CDS 45.0%
CAACTCTTCAGCCATGATAG+GGG + chr1_3:1359637-1359656 Msa0095920:CDS 45.0%
TTTCCATTGGCAGTTTGTGG+AGG + chr1_3:1359718-1359737 Msa0095920:CDS 45.0%
! TTTGTGGAGGCATAGTTCGA+GGG + chr1_3:1359731-1359750 Msa0095920:CDS 45.0%
TTTGCCTTCAAGCTTCGTCT+TGG + chr1_3:1359829-1359848 Msa0095920:CDS 45.0%
GTCCAAAGAAGAGTCCAACA+AGG - chr1_3:1359855-1359874 None:intergenic 45.0%
CATTGCTAGGATAAAGTGGG+TGG + chr1_3:1359918-1359937 Msa0095920:CDS 45.0%
! TCATTTTCACGAGCCTCAGT+TGG - chr1_3:1360018-1360037 None:intergenic 45.0%
! AATGGTGGAGGAGGTGACAT+TGG - chr1_3:1358572-1358591 None:intergenic 50.0%
! TTTCGGGTCTGTAATGGTGG+AGG - chr1_3:1358584-1358603 None:intergenic 50.0%
! GGTGCCATGGAACCTATTTG+TGG + chr1_3:1358821-1358840 Msa0095920:CDS 50.0%
CCATGAGCCTGTCCACAAAT+AGG - chr1_3:1358836-1358855 None:intergenic 50.0%
CCTATTTGTGGACAGGCTCA+TGG + chr1_3:1358833-1358852 Msa0095920:CDS 50.0%
! GTATTGGCGTGGAAAGAAGG+AGG + chr1_3:1359262-1359281 Msa0095920:CDS 50.0%
GTGGAAAGAAGGAGGATGGT+GGG + chr1_3:1359270-1359289 Msa0095920:CDS 50.0%
GCAAACGCCAAGCAAGCATT+GGG + chr1_3:1359406-1359425 Msa0095920:CDS 50.0%
! GCACGTGTGTCTCTAGGAAT+AGG + chr1_3:1359556-1359575 Msa0095920:CDS 50.0%
!! GGTTTTATCGCAGGTTGCAC+CGG + chr1_3:1359577-1359596 Msa0095920:CDS 50.0%
GGCAACTCTTCAGCCATGAT+AGG + chr1_3:1359635-1359654 Msa0095920:CDS 50.0%
ATGCCTCCACAAACTGCCAA+TGG - chr1_3:1359724-1359743 None:intergenic 50.0%
! GTTTGTGGAGGCATAGTTCG+AGG + chr1_3:1359730-1359749 Msa0095920:CDS 50.0%
!!! TATTTTCTGGCTCTGCCCCT+TGG + chr1_3:1359799-1359818 Msa0095920:CDS 50.0%
AAGGCCAAGACGAAGCTTGA+AGG - chr1_3:1359836-1359855 None:intergenic 50.0%
!! AAGCTTCGTCTTGGCCTTGT+TGG + chr1_3:1359838-1359857 Msa0095920:CDS 50.0%
!! GGCCTTGTTGGACTCTTCTT+TGG + chr1_3:1359850-1359869 Msa0095920:CDS 50.0%
GGTACTTCTGCGTCATCACA+GGG - chr1_3:1359997-1360016 None:intergenic 50.0%
TGGTACTTCTGCGTCATCAC+AGG - chr1_3:1359998-1360017 None:intergenic 50.0%
!! TGACGCAGAAGTACCAACTG+AGG + chr1_3:1360002-1360021 Msa0095920:CDS 50.0%
! AATGGTGGAGGAGGTGACAT+TGG - chr1_3:1358572-1358591 None:intergenic 50.0%
! TTTCGGGTCTGTAATGGTGG+AGG - chr1_3:1358584-1358603 None:intergenic 50.0%
! GGTGCCATGGAACCTATTTG+TGG + chr1_3:1358821-1358840 Msa0095920:CDS 50.0%
CCATGAGCCTGTCCACAAAT+AGG - chr1_3:1358836-1358855 None:intergenic 50.0%
CCTATTTGTGGACAGGCTCA+TGG + chr1_3:1358833-1358852 Msa0095920:CDS 50.0%
! GTATTGGCGTGGAAAGAAGG+AGG + chr1_3:1359262-1359281 Msa0095920:CDS 50.0%
GTGGAAAGAAGGAGGATGGT+GGG + chr1_3:1359270-1359289 Msa0095920:CDS 50.0%
GCAAACGCCAAGCAAGCATT+GGG + chr1_3:1359406-1359425 Msa0095920:CDS 50.0%
! GCACGTGTGTCTCTAGGAAT+AGG + chr1_3:1359556-1359575 Msa0095920:CDS 50.0%
!! GGTTTTATCGCAGGTTGCAC+CGG + chr1_3:1359577-1359596 Msa0095920:CDS 50.0%
GGCAACTCTTCAGCCATGAT+AGG + chr1_3:1359635-1359654 Msa0095920:CDS 50.0%
ATGCCTCCACAAACTGCCAA+TGG - chr1_3:1359724-1359743 None:intergenic 50.0%
! GTTTGTGGAGGCATAGTTCG+AGG + chr1_3:1359730-1359749 Msa0095920:CDS 50.0%
!!! TATTTTCTGGCTCTGCCCCT+TGG + chr1_3:1359799-1359818 Msa0095920:CDS 50.0%
AAGGCCAAGACGAAGCTTGA+AGG - chr1_3:1359836-1359855 None:intergenic 50.0%
!! AAGCTTCGTCTTGGCCTTGT+TGG + chr1_3:1359838-1359857 Msa0095920:CDS 50.0%
!! GGCCTTGTTGGACTCTTCTT+TGG + chr1_3:1359850-1359869 Msa0095920:CDS 50.0%
GGTACTTCTGCGTCATCACA+GGG - chr1_3:1359997-1360016 None:intergenic 50.0%
TGGTACTTCTGCGTCATCAC+AGG - chr1_3:1359998-1360017 None:intergenic 50.0%
!! TGACGCAGAAGTACCAACTG+AGG + chr1_3:1360002-1360021 Msa0095920:CDS 50.0%
GTGGAGGAGGTGACATTGGT+TGG - chr1_3:1358568-1358587 None:intergenic 55.0%
TCTGAAAGCAGCGTCTTCGC+TGG - chr1_3:1358620-1358639 None:intergenic 55.0%
! AGCGAAGACGCTGCTTTCAG+AGG + chr1_3:1358619-1358638 Msa0095920:CDS 55.0%
CTAGGTGAGCTCAGCTTAGC+CGG + chr1_3:1358737-1358756 Msa0095920:CDS 55.0%
! GAATGGTCTCTGTGGTGCCA+TGG + chr1_3:1358808-1358827 Msa0095920:CDS 55.0%
GGAAACCCCTCTTAGACCCA+TGG - chr1_3:1359167-1359186 None:intergenic 55.0%
GGGTCTAAGAGGGGTTTCCA+TGG + chr1_3:1359168-1359187 Msa0095920:CDS 55.0%
GAGGGGTTTCCATGGCTGTT+TGG + chr1_3:1359176-1359195 Msa0095920:CDS 55.0%
TGGCGTGGAAAGAAGGAGGA+TGG + chr1_3:1359266-1359285 Msa0095920:CDS 55.0%
CGTGGAAAGAAGGAGGATGG+TGG + chr1_3:1359269-1359288 Msa0095920:CDS 55.0%
ATGCTTGCTTGGCGTTTGCG+AGG - chr1_3:1359405-1359424 None:intergenic 55.0%
CGCAAACGCCAAGCAAGCAT+TGG + chr1_3:1359405-1359424 Msa0095920:CDS 55.0%
GACACGGGTGGAAACACAAG+TGG - chr1_3:1359491-1359510 None:intergenic 55.0%
! AAGCTCGTTTGAGACACGGG+TGG - chr1_3:1359503-1359522 None:intergenic 55.0%
ACCCGTGTCTCAAACGAGCT+TGG + chr1_3:1359502-1359521 Msa0095920:CDS 55.0%
! GCCAAGCTCGTTTGAGACAC+GGG - chr1_3:1359506-1359525 None:intergenic 55.0%
! CGCCAAGCTCGTTTGAGACA+CGG - chr1_3:1359507-1359526 None:intergenic 55.0%
! CTAGAGACACACGTGCTGAC+CGG - chr1_3:1359552-1359571 None:intergenic 55.0%
!! CTTGGTGATGGTGGCTGCAA+GGG + chr1_3:1359603-1359622 Msa0095920:CDS 55.0%
!! TTGGTGATGGTGGCTGCAAG+GGG + chr1_3:1359604-1359623 Msa0095920:CDS 55.0%
TGGTGGCTGCAAGGGGAATT+TGG + chr1_3:1359611-1359630 Msa0095920:CDS 55.0%
GGTGGCTGCAAGGGGAATTT+GGG + chr1_3:1359612-1359631 Msa0095920:CDS 55.0%
GTGGCTGCAAGGGGAATTTG+GGG + chr1_3:1359613-1359632 Msa0095920:CDS 55.0%
TGGCTGCAAGGGGAATTTGG+GGG + chr1_3:1359614-1359633 Msa0095920:CDS 55.0%
GTGGAGGAGGTGACATTGGT+TGG - chr1_3:1358568-1358587 None:intergenic 55.0%
TCTGAAAGCAGCGTCTTCGC+TGG - chr1_3:1358620-1358639 None:intergenic 55.0%
! AGCGAAGACGCTGCTTTCAG+AGG + chr1_3:1358619-1358638 Msa0095920:CDS 55.0%
CTAGGTGAGCTCAGCTTAGC+CGG + chr1_3:1358737-1358756 Msa0095920:CDS 55.0%
! GAATGGTCTCTGTGGTGCCA+TGG + chr1_3:1358808-1358827 Msa0095920:CDS 55.0%
GGAAACCCCTCTTAGACCCA+TGG - chr1_3:1359167-1359186 None:intergenic 55.0%
GGGTCTAAGAGGGGTTTCCA+TGG + chr1_3:1359168-1359187 Msa0095920:CDS 55.0%
GAGGGGTTTCCATGGCTGTT+TGG + chr1_3:1359176-1359195 Msa0095920:CDS 55.0%
TGGCGTGGAAAGAAGGAGGA+TGG + chr1_3:1359266-1359285 Msa0095920:CDS 55.0%
CGTGGAAAGAAGGAGGATGG+TGG + chr1_3:1359269-1359288 Msa0095920:CDS 55.0%
ATGCTTGCTTGGCGTTTGCG+AGG - chr1_3:1359405-1359424 None:intergenic 55.0%
CGCAAACGCCAAGCAAGCAT+TGG + chr1_3:1359405-1359424 Msa0095920:CDS 55.0%
GACACGGGTGGAAACACAAG+TGG - chr1_3:1359491-1359510 None:intergenic 55.0%
! AAGCTCGTTTGAGACACGGG+TGG - chr1_3:1359503-1359522 None:intergenic 55.0%
ACCCGTGTCTCAAACGAGCT+TGG + chr1_3:1359502-1359521 Msa0095920:CDS 55.0%
! GCCAAGCTCGTTTGAGACAC+GGG - chr1_3:1359506-1359525 None:intergenic 55.0%
! CGCCAAGCTCGTTTGAGACA+CGG - chr1_3:1359507-1359526 None:intergenic 55.0%
! CTAGAGACACACGTGCTGAC+CGG - chr1_3:1359552-1359571 None:intergenic 55.0%
!! CTTGGTGATGGTGGCTGCAA+GGG + chr1_3:1359603-1359622 Msa0095920:CDS 55.0%
!! TTGGTGATGGTGGCTGCAAG+GGG + chr1_3:1359604-1359623 Msa0095920:CDS 55.0%
TGGTGGCTGCAAGGGGAATT+TGG + chr1_3:1359611-1359630 Msa0095920:CDS 55.0%
GGTGGCTGCAAGGGGAATTT+GGG + chr1_3:1359612-1359631 Msa0095920:CDS 55.0%
GTGGCTGCAAGGGGAATTTG+GGG + chr1_3:1359613-1359632 Msa0095920:CDS 55.0%
TGGCTGCAAGGGGAATTTGG+GGG + chr1_3:1359614-1359633 Msa0095920:CDS 55.0%
! CGGGTCTGTAATGGTGGAGG+AGG - chr1_3:1358581-1358600 None:intergenic 60.0%
CTTGCTTGGCGTTTGCGAGG+TGG - chr1_3:1359402-1359421 None:intergenic 60.0%
CGGTCAGCACGTGTGTCTCT+AGG + chr1_3:1359550-1359569 Msa0095920:CDS 60.0%
! TTGCACCGGCAGCTTGGTGA+TGG + chr1_3:1359591-1359610 Msa0095920:CDS 60.0%
AGCCACCATCACCAAGCTGC+CGG - chr1_3:1359599-1359618 None:intergenic 60.0%
!! GCTTGGTGATGGTGGCTGCA+AGG + chr1_3:1359602-1359621 Msa0095920:CDS 60.0%
TTCGAGGGACAGCTCGACCT+TGG + chr1_3:1359746-1359765 Msa0095920:CDS 60.0%
AGGGACAGCTCGACCTTGGT+TGG + chr1_3:1359750-1359769 Msa0095920:CDS 60.0%
GGGACAGCTCGACCTTGGTT+GGG + chr1_3:1359751-1359770 Msa0095920:CDS 60.0%
GTGGGTGGAAGAAGCTGCCA+AGG + chr1_3:1359933-1359952 Msa0095920:CDS 60.0%
! CGGGTCTGTAATGGTGGAGG+AGG - chr1_3:1358581-1358600 None:intergenic 60.0%
CTTGCTTGGCGTTTGCGAGG+TGG - chr1_3:1359402-1359421 None:intergenic 60.0%
CGGTCAGCACGTGTGTCTCT+AGG + chr1_3:1359550-1359569 Msa0095920:CDS 60.0%
! TTGCACCGGCAGCTTGGTGA+TGG + chr1_3:1359591-1359610 Msa0095920:CDS 60.0%
AGCCACCATCACCAAGCTGC+CGG - chr1_3:1359599-1359618 None:intergenic 60.0%
!! GCTTGGTGATGGTGGCTGCA+AGG + chr1_3:1359602-1359621 Msa0095920:CDS 60.0%
TTCGAGGGACAGCTCGACCT+TGG + chr1_3:1359746-1359765 Msa0095920:CDS 60.0%
AGGGACAGCTCGACCTTGGT+TGG + chr1_3:1359750-1359769 Msa0095920:CDS 60.0%
GGGACAGCTCGACCTTGGTT+GGG + chr1_3:1359751-1359770 Msa0095920:CDS 60.0%
GTGGGTGGAAGAAGCTGCCA+AGG + chr1_3:1359933-1359952 Msa0095920:CDS 60.0%
GGTGAGCTCAGCTTAGCCGG+TGG + chr1_3:1358740-1358759 Msa0095920:CDS 65.0%
ACCAAGCCGACCGAGCGTAC+CGG + chr1_3:1359530-1359549 Msa0095920:CDS 65.0%
TGCTGACCGGTACGCTCGGT+CGG - chr1_3:1359539-1359558 None:intergenic 65.0%
! CACGTGCTGACCGGTACGCT+CGG - chr1_3:1359543-1359562 None:intergenic 65.0%
!! CACCGGCAGCTTGGTGATGG+TGG + chr1_3:1359594-1359613 Msa0095920:CDS 65.0%
GGTGAGCTCAGCTTAGCCGG+TGG + chr1_3:1358740-1358759 Msa0095920:CDS 65.0%
ACCAAGCCGACCGAGCGTAC+CGG + chr1_3:1359530-1359549 Msa0095920:CDS 65.0%
TGCTGACCGGTACGCTCGGT+CGG - chr1_3:1359539-1359558 None:intergenic 65.0%
! CACGTGCTGACCGGTACGCT+CGG - chr1_3:1359543-1359562 None:intergenic 65.0%
!! CACCGGCAGCTTGGTGATGG+TGG + chr1_3:1359594-1359613 Msa0095920:CDS 65.0%
AGCTTAGCCGGTGGCGCGCT+CGG + chr1_3:1358749-1358768 Msa0095920:CDS 70.0%
AGTGAACCCGAGCGCGCCAC+CGG - chr1_3:1358759-1358778 None:intergenic 70.0%
ACCGGTACGCTCGGTCGGCT+TGG - chr1_3:1359534-1359553 None:intergenic 70.0%
! CGCAGGTTGCACCGGCAGCT+TGG + chr1_3:1359585-1359604 Msa0095920:CDS 70.0%
AGCTTAGCCGGTGGCGCGCT+CGG + chr1_3:1358749-1358768 Msa0095920:CDS 70.0%
AGTGAACCCGAGCGCGCCAC+CGG - chr1_3:1358759-1358778 None:intergenic 70.0%
ACCGGTACGCTCGGTCGGCT+TGG - chr1_3:1359534-1359553 None:intergenic 70.0%
! CGCAGGTTGCACCGGCAGCT+TGG + chr1_3:1359585-1359604 Msa0095920:CDS 70.0%
GCTTAGCCGGTGGCGCGCTC+GGG + chr1_3:1358750-1358769 Msa0095920:CDS 75.0%
GCTTAGCCGGTGGCGCGCTC+GGG + chr1_3:1358750-1358769 Msa0095920:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 1358512 1360047 1358512 ID=Msa0095920;Name=Msa0095920
chr1_3 mRNA 1358512 1360047 1358512 ID=Msa0095920-mRNA-1;Parent=Msa0095920;Name=Msa0095920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|511
chr1_3 exon 1358512 1360047 1358512 ID=Msa0095920-mRNA-1:exon:233;Parent=Msa0095920-mRNA-1
chr1_3 CDS 1358512 1360047 1358512 ID=Msa0095920-mRNA-1:cds;Parent=Msa0095920-mRNA-1
Gene Sequence

>Msa0095920

ATGTCATCAACATGCAAATTAGGAGAAAACCTTAGCTCAAACCATAAAACTAACCAACCAATGTCACCTCCTCCACCATTACAGACCCGAAAATGTGACGCAAATCCAGCGAAGACGCTGCTTTCAGAGGAGCTAAGAGTTCAAGGAAGATTAGCTTTTCCAATGGTGTTGATGAATTTAGCTTGGTTTGCCAAGACAGCAATCACAACAGCATTTTTGGGTCGACTAGGTGAGCTCAGCTTAGCCGGTGGCGCGCTCGGGTTCACTTTCGCTAACGTTACTGGCTTCTCTGTCTTGAATGGTCTCTGTGGTGCCATGGAACCTATTTGTGGACAGGCTCATGGAGCTAAAAACGTGAGACTCCTTCACAAGACACTTCTCATGACAATTGTATTGTTGCTATTGGTAACAATTCCTATTACTTTCATGTGGCTTCATATTGACAAAATTTTGATTCATTTTGGCCAACAACAAGAAATTTCCACTGTTGCTGGTACTTATGTTTACTATCTCATACCTGATTTGTTTGTTATGTCACTCTTGTGTCCCTTAAAAGCTTACTTGAGCTCTCAAAGCATCACTCTTCCTACCATGTTTAGTTCTGGGGTAGCACTTGCTTTTCATGTTCCTGTTAACATACTACTCTCAAAAACCATGGGTCTAAGAGGGGTTTCCATGGCTGTTTGGATAACTGATCTTATTGTTGTTGTTCTTCTGGCCATTTATGTTTTAATTCTAGAGAATCGAAAGGTATTGGCGTGGAAAGAAGGAGGATGGTGGGATCAGAGTATTATGGATTGGATTAGGCTAATCAAGCTATCTGGATCTTGTTGTCTCAACACATGTATGGAGTGGTGGTGCTATGAAATTCTAGTCTTGCTTACTGGCCACCTCGCAAACGCCAAGCAAGCATTGGGAGTTTTAGCCATTGTGTTGAACTTTGACTATTTACTTTTCTCAGTGATGCTGTCATTGGCCACTTGTGTTTCCACCCGTGTCTCAAACGAGCTTGGCGCAAACCAAGCCGACCGAGCGTACCGGTCAGCACGTGTGTCTCTAGGAATAGGTTTTATCGCAGGTTGCACCGGCAGCTTGGTGATGGTGGCTGCAAGGGGAATTTGGGGGCAACTCTTCAGCCATGATAGGGGCACTATAAATGGAGTAAAAAAGACAATGTTGTTGATGGCTCTAGTGGAGTTGTTTAATTTTCCATTGGCAGTTTGTGGAGGCATAGTTCGAGGGACAGCTCGACCTTGGTTGGGTATGTATGCAAATCTAGGCGGGTTTTATTTTCTGGCTCTGCCCCTTGGTGTTGTTTTTGCCTTCAAGCTTCGTCTTGGCCTTGTTGGACTCTTCTTTGGACTTCTTACTGGTATTGTTGTTTGCTTGTCATTATTATTAGTATTCATTGCTAGGATAAAGTGGGTGGAAGAAGCTGCCAAGGCACAAATATTAGCAAGTAACGACCAAGTTAAAGAAGTTCCCTGTGATGACGCAGAAGTACCAACTGAGGCTCGTGAAAATGACAAAGTGTAA
Protein sequence

>Msa0095920

MSSTCKLGENLSSNHKTNQPMSPPPPLQTRKCDANPAKTLLSEELRVQGRLAFPMVLMNLAWFAKTAITTAFLGRLGELSLAGGALGFTFANVTGFSVLNGLCGAMEPICGQAHGAKNVRLLHKTLLMTIVLLLLVTIPITFMWLHIDKILIHFGQQQEISTVAGTYVYYLIPDLFVMSLLCPLKAYLSSQSITLPTMFSSGVALAFHVPVNILLSKTMGLRGVSMAVWITDLIVVVLLAIYVLILENRKVLAWKEGGWWDQSIMDWIRLIKLSGSCCLNTCMEWWCYEILVLLTGHLANAKQALGVLAIVLNFDYLLFSVMLSLATCVSTRVSNELGANQADRAYRSARVSLGIGFIAGCTGSLVMVAARGIWGQLFSHDRGTINGVKKTMLLMALVELFNFPLAVCGGIVRGTARPWLGMYANLGGFYFLALPLGVVFAFKLRLGLVGLFFGLLTGIVVCLSLLLVFIARIKWVEEAAKAQILASNDQVKEVPCDDAEVPTEARENDKV*