AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0108490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108490 MtrunA17_Chr1g0165641 83.908 174 13 3 1 170 1 163 5.65e-100 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0108490 AT5G17560.1 75.269 93 23 0 73 165 84 176 1.44e-48 155
Msa0108490 AT5G17560.3 61.224 49 19 0 73 121 84 132 1.03e-15 70.1
Msa0108490 AT5G17560.2 63.830 47 17 0 73 119 84 130 1.22e-15 70.1

Find 53 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTATTCCAATTCACTTTC+TGG 0.127886 1_3:+20042534 Msa0108490:three_prime_UTR
CCGCAAAGCTCTTCCCGTTT+TGG 0.252036 1_3:+20037712 Msa0108490:CDS
AATAATTTCTCATCATGTTT+AGG 0.269314 1_3:-20037833 None:intergenic
AAACATAATGGAGAAGTAAA+TGG 0.273966 1_3:-20042661 None:intergenic
TCCTTTGTTTACCAACTTGT+TGG 0.298320 1_3:-20037551 None:intergenic
GGCTGCTTCAGCAGGAGTTT+TGG 0.331235 1_3:-20042367 None:intergenic
TTTCTACGCTGTGTTGCTGC+TGG 0.353790 1_3:-20037636 None:intergenic
AACAAACCGCAGAACATTGC+TGG 0.379497 1_3:-20042623 None:intergenic
TTCCCGGCGGCTGCTTCAGC+AGG 0.381862 1_3:-20042375 None:intergenic
AGTATTCCAATTCACTTTCT+GGG 0.384864 1_3:+20042535 Msa0108490:three_prime_UTR
GCAACTCCCAGAAAGTGAAT+TGG 0.388129 1_3:-20042541 None:intergenic
CGCTGTGTTGCTGCTGGGAG+GGG 0.389003 1_3:-20037630 None:intergenic
GACCATCCTTTGCCTATTCA+CGG 0.418047 1_3:-20042286 None:intergenic
GTGGATTTGTTGTTACTGTA+AGG 0.418726 1_3:-20037740 None:intergenic
AACATAATGGAGAAGTAAAT+GGG 0.420499 1_3:-20042660 None:intergenic
AAATTGTCAATTGTGTTGTT+TGG 0.421046 1_3:-20042580 None:intergenic
AGGGACAATCAGCCGTGAAT+AGG 0.422097 1_3:+20042274 Msa0108490:CDS
ATGGTGACGGACGCCATGTT+AGG 0.435349 1_3:+20039839 Msa0108490:CDS
GTCTCTGTAAAGGATGCTTA+TGG 0.438536 1_3:+20039820 Msa0108490:CDS
GGATGGTCTATAAAGCCATA+TGG 0.439769 1_3:+20042301 Msa0108490:CDS
CTGTAAGGTCGAACCAAAAC+GGG 0.449771 1_3:-20037725 None:intergenic
TTCTACGCTGTGTTGCTGCT+GGG 0.458487 1_3:-20037635 None:intergenic
GAGAGAAGTAGTTTGTGAAG+TGG 0.462902 1_3:-20037798 None:intergenic
ACTCTGAAGTTCCTCCCATA+TGG 0.475231 1_3:-20042316 None:intergenic
CATTCAATCTATGCAGCAAA+AGG 0.489634 1_3:+20037937 Msa0108490:CDS
ACGCTGTGTTGCTGCTGGGA+GGG 0.493070 1_3:-20037631 None:intergenic
ACTCCTGCTGAAGCAGCCGC+CGG 0.495922 1_3:+20042372 Msa0108490:CDS
ACTGTAAGGTCGAACCAAAA+CGG 0.500866 1_3:-20037726 None:intergenic
CTCCTGCTGAAGCAGCCGCC+GGG 0.517457 1_3:+20042373 Msa0108490:CDS
TGCTGCATAGATTGAATGAG+AGG 0.526410 1_3:-20037932 None:intergenic
TGCAGAAACAGTCTCTGTAA+AGG 0.528582 1_3:+20039810 Msa0108490:CDS
CCAAAACGGGAAGAGCTTTG+CGG 0.536712 1_3:-20037712 None:intergenic
GAATTGAATCTCCAACAAGT+TGG 0.537664 1_3:+20037540 None:intergenic
GATGGTCTATAAAGCCATAT+GGG 0.540058 1_3:+20042302 Msa0108490:CDS
GCTACTAATGTAAACGATGC+TGG 0.547800 1_3:+20037896 Msa0108490:CDS
TGTTGTATCGACAGCCTTCG+AGG 0.555514 1_3:+20042254 Msa0108490:CDS
AAGAGCTTTGCGGAGTAAAG+TGG 0.561290 1_3:-20037702 None:intergenic
GTAAAGGATGCTTATGGTGA+CGG 0.570886 1_3:+20039826 Msa0108490:CDS
CACGGCTGATTGTCCCTCGA+AGG 0.576768 1_3:-20042268 None:intergenic
AGCTTTGCGGAGTAAAGTGG+TGG 0.589293 1_3:-20037699 None:intergenic
TACGCTGTGTTGCTGCTGGG+AGG 0.590932 1_3:-20037632 None:intergenic
TCCAACAAGTTGGTAAACAA+AGG 0.603601 1_3:+20037550 Msa0108490:five_prime_UTR
AGCCGTGAATAGGCAAAGGA+TGG 0.626414 1_3:+20042284 Msa0108490:CDS
TAGTTTGTGAAGTGGATCTG+AGG 0.629676 1_3:-20037790 None:intergenic
AATCAGCCGTGAATAGGCAA+AGG 0.635801 1_3:+20042280 Msa0108490:CDS
GTTGTATCGACAGCCTTCGA+GGG 0.642242 1_3:+20042255 Msa0108490:CDS
GATATGATTACGAAAGAGAA+CGG 0.643450 1_3:-20037762 None:intergenic
CAATATCCAGCAATGTTCTG+CGG 0.655571 1_3:+20042617 Msa0108490:three_prime_UTR
TGCATGTGAACACATTGCAA+TGG 0.665914 1_3:-20042505 None:intergenic
CTTGCGAATAGAAGTAACAG+AGG 0.682527 1_3:-20037861 None:intergenic
GGTCTATAAAGCCATATGGG+AGG 0.691387 1_3:+20042305 Msa0108490:CDS
GCTTTGCGGAGTAAAGTGGT+GGG 0.693255 1_3:-20037698 None:intergenic
ATGATTACGAAAGAGAACGG+TGG 0.718046 1_3:-20037759 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATATTTTAAATTTGAAG+AGG - chr1_3:20038983-20039002 None:intergenic 15.0%
!!! ATTTTGCTAGAAATTTATTT+AGG + chr1_3:20039212-20039231 Msa0108490:intron 15.0%
!!! ATATCTTTATTTTTCTATCT+AGG + chr1_3:20039241-20039260 Msa0108490:intron 15.0%
!! TATCTAAGTTTATGAAATTT+AGG - chr1_3:20039371-20039390 None:intergenic 15.0%
!! TAAATTTCATAAACTTAGAT+AGG + chr1_3:20039370-20039389 Msa0108490:intron 15.0%
!! AGTATCTAAATTTAGATATA+GGG + chr1_3:20039393-20039412 Msa0108490:intron 15.0%
!! ATGAAATTCTGAATTTATTT+AGG - chr1_3:20039440-20039459 None:intergenic 15.0%
!!! ATTTCATAATTCTAAGATAT+AGG + chr1_3:20039453-20039472 Msa0108490:intron 15.0%
!!! AATTTCATAATTCTAAGATA+TGG + chr1_3:20039452-20039471 Msa0108490:intron 15.0%
!!! ATTTCATAATTCTAAGATAT+GGG + chr1_3:20039453-20039472 Msa0108490:intron 15.0%
!!! GTAAATTTTAAATTGATTGA+TGG + chr1_3:20039595-20039614 Msa0108490:intron 15.0%
!!! TTAATTGTTATCTCTTTTTT+GGG + chr1_3:20039718-20039737 Msa0108490:intron 15.0%
!! TAGATATTTCAAATTTACTA+AGG - chr1_3:20040075-20040094 None:intergenic 15.0%
!!! ATAATATGATAATGATTCAA+TGG + chr1_3:20040160-20040179 Msa0108490:intron 15.0%
!!! TTTTTCTAATTTCTATAACA+CGG + chr1_3:20040276-20040295 Msa0108490:intron 15.0%
!!! AAATATATCACTTAGTTTTT+GGG - chr1_3:20040841-20040860 None:intergenic 15.0%
!!! AAAATATATCACTTAGTTTT+TGG - chr1_3:20040842-20040861 None:intergenic 15.0%
!!! TATGTATTGATCTAATAATA+GGG + chr1_3:20041457-20041476 Msa0108490:intron 15.0%
!!! TCTCTTAATATATTTTTGTA+TGG + chr1_3:20042447-20042466 Msa0108490:three_prime_UTR 15.0%
!!! TTTTAGAAATGAAAACATAA+TGG - chr1_3:20042676-20042695 None:intergenic 15.0%
!! AATAATTTCTCATCATGTTT+AGG - chr1_3:20037836-20037855 None:intergenic 20.0%
!!! TTAAACTGAAAGTGTAAATA+TGG + chr1_3:20038552-20038571 Msa0108490:intron 20.0%
!! ATATGGATTCTAATCAATTT+AGG + chr1_3:20038569-20038588 Msa0108490:intron 20.0%
!! TATGGATTCTAATCAATTTA+GGG + chr1_3:20038570-20038589 Msa0108490:intron 20.0%
!! AACTCAAAATATGTATTGAA+CGG + chr1_3:20038729-20038748 Msa0108490:intron 20.0%
!!! ACTGAATCTTTTAAAAAAGA+TGG + chr1_3:20039035-20039054 Msa0108490:intron 20.0%
!! AGATAGAAAAGTAAAGATAT+AGG + chr1_3:20039313-20039332 Msa0108490:intron 20.0%
!! GAGTATCTAAATTTAGATAT+AGG + chr1_3:20039392-20039411 Msa0108490:intron 20.0%
!!! CAAACTCTAGAAATTTATTT+AGG + chr1_3:20039550-20039569 Msa0108490:intron 20.0%
!!! ATATTTTTCCTCAAAATTGA+AGG - chr1_3:20039655-20039674 None:intergenic 20.0%
!!! CTTAATTGTTATCTCTTTTT+TGG + chr1_3:20039717-20039736 Msa0108490:intron 20.0%
!!! TAATTGTTATCTCTTTTTTG+GGG + chr1_3:20039719-20039738 Msa0108490:intron 20.0%
!! TTAACTATTGAAGTGAATTT+CGG + chr1_3:20039873-20039892 Msa0108490:intron 20.0%
!!! TGTTGATTTTGATAGTTAAA+TGG + chr1_3:20039948-20039967 Msa0108490:intron 20.0%
!!! AAATCTAAAAGTATACAACT+AGG - chr1_3:20040337-20040356 None:intergenic 20.0%
!! TTAGTTTATTGAACAATACT+AGG - chr1_3:20040504-20040523 None:intergenic 20.0%
!! AATTAATTTAATAGTCAAGC+TGG + chr1_3:20040804-20040823 Msa0108490:intron 20.0%
!!! AATATATCACTTAGTTTTTG+GGG - chr1_3:20040840-20040859 None:intergenic 20.0%
!!! GTATGTATTGATCTAATAAT+AGG + chr1_3:20041456-20041475 Msa0108490:intron 20.0%
!!! ATGTATTGATCTAATAATAG+GGG + chr1_3:20041458-20041477 Msa0108490:intron 20.0%
!!! TTTAATTTAGTGCAAAACAA+AGG - chr1_3:20041686-20041705 None:intergenic 20.0%
!!! TTTGTTTTGCACTAAATTAA+AGG + chr1_3:20041685-20041704 Msa0108490:intron 20.0%
!!! ATATAACATTTAAAGCATAG+TGG + chr1_3:20041757-20041776 Msa0108490:intron 20.0%
!!! AGAAAATTCAATTTTCAGTT+TGG - chr1_3:20042086-20042105 None:intergenic 20.0%
! CGTAGAAATCAATAAAAATG+CGG + chr1_3:20037651-20037670 Msa0108490:exon 25.0%
! GTAGAAATCAATAAAAATGC+GGG + chr1_3:20037652-20037671 Msa0108490:exon 25.0%
! GGATATTATTGATGCAAATT+CGG + chr1_3:20038100-20038119 Msa0108490:intron 25.0%
! AAAATTGGTTACAAAACTGA+TGG + chr1_3:20038169-20038188 Msa0108490:intron 25.0%
!!! TCACATTGTTGATTTTCTAA+TGG - chr1_3:20038209-20038228 None:intergenic 25.0%
!!! ACCTTGAATTTTTTTGGTTT+CGG - chr1_3:20038296-20038315 None:intergenic 25.0%
! ACCAAAAAAATTCAAGGTTT+CGG + chr1_3:20038298-20038317 Msa0108490:intron 25.0%
! TGAAAAAAAAAAGGATGAAG+CGG + chr1_3:20038627-20038646 Msa0108490:intron 25.0%
! AAAACAAAATCTCCCTAATT+TGG + chr1_3:20038704-20038723 Msa0108490:intron 25.0%
!!! ATTTTGAGTTCTCCAAATTA+GGG - chr1_3:20038719-20038738 None:intergenic 25.0%
!!! TATTTTGAGTTCTCCAAATT+AGG - chr1_3:20038720-20038739 None:intergenic 25.0%
! ACTCAAAATATGTATTGAAC+GGG + chr1_3:20038730-20038749 Msa0108490:intron 25.0%
! GTTGTATGACAATATAGATT+GGG - chr1_3:20038788-20038807 None:intergenic 25.0%
! TGTTGTATGACAATATAGAT+TGG - chr1_3:20038789-20038808 None:intergenic 25.0%
! AGAAGCAATGATATAAGAAA+AGG - chr1_3:20039130-20039149 None:intergenic 25.0%
! TCTAGATACAATCATCAAAT+AGG - chr1_3:20039296-20039315 None:intergenic 25.0%
! AGAAAAGTAAAGATATAGGT+AGG + chr1_3:20039317-20039336 Msa0108490:intron 25.0%
! GCAAATTCATAAGATAGTAA+AGG - chr1_3:20039621-20039640 None:intergenic 25.0%
! AAAAATATGCTTACCTAACA+TGG - chr1_3:20039855-20039874 None:intergenic 25.0%
! ATATACAATGTTAACCACAA+AGG - chr1_3:20039909-20039928 None:intergenic 25.0%
! ATCATAATTCGGAATATACA+TGG - chr1_3:20040044-20040063 None:intergenic 25.0%
! AGGTTGTAACTATCATAATT+CGG - chr1_3:20040055-20040074 None:intergenic 25.0%
! ACAAAACTTCAGATATTCAT+AGG - chr1_3:20040119-20040138 None:intergenic 25.0%
!! TATGATAATGATTCAATGGT+TGG + chr1_3:20040164-20040183 Msa0108490:intron 25.0%
! AAGTTTATTCTTGAAGTGAT+AGG - chr1_3:20040392-20040411 None:intergenic 25.0%
! AATTAAGTTTCTCTGTTTAG+AGG - chr1_3:20040462-20040481 None:intergenic 25.0%
! CTGTATGAATATTGCATTTA+TGG - chr1_3:20040600-20040619 None:intergenic 25.0%
!!! TATATTTTGATTGAAGAGCA+TGG + chr1_3:20040854-20040873 Msa0108490:intron 25.0%
!!! AGCAAAAGCACATTTTTTTT+TGG + chr1_3:20041036-20041055 Msa0108490:intron 25.0%
! TTATGCAGAAAAATTAAGAG+TGG + chr1_3:20041174-20041193 Msa0108490:intron 25.0%
!!! ACTATCTGGAAAAAGTATTT+AGG + chr1_3:20041208-20041227 Msa0108490:intron 25.0%
! TTATGCAGAAAAATTAAGAG+TGG + chr1_3:20041174-20041193 Msa0108490:intron 25.0%
!!! ACTATCTGGAAAAAGTATTT+AGG + chr1_3:20041208-20041227 Msa0108490:intron 25.0%
! AAAAGCTATTAACATGATGT+TGG - chr1_3:20041338-20041357 None:intergenic 25.0%
! AAACTATCAAAACCTTATTC+AGG - chr1_3:20041382-20041401 None:intergenic 25.0%
!!! GATCAATACATACTTGTTTT+GGG - chr1_3:20041449-20041468 None:intergenic 25.0%
!! AGATCAATACATACTTGTTT+TGG - chr1_3:20041450-20041469 None:intergenic 25.0%
!! AATCAAATCATTTGTTAGCA+CGG - chr1_3:20041513-20041532 None:intergenic 25.0%
!! ATGATTTGATTTCAATAGCT+AGG + chr1_3:20041522-20041541 Msa0108490:intron 25.0%
! ATCCATTTGCATCTTTATTA+AGG + chr1_3:20041643-20041662 Msa0108490:intron 25.0%
! TTCCTTAATAAAGATGCAAA+TGG - chr1_3:20041648-20041667 None:intergenic 25.0%
! AAAACAAAGGTCTTTCAAAA+AGG - chr1_3:20041673-20041692 None:intergenic 25.0%
! TATATCTACAGATGTTTCAA+TGG - chr1_3:20041740-20041759 None:intergenic 25.0%
!!! AAAAGTGCCATTAAAATTGT+TGG + chr1_3:20041829-20041848 Msa0108490:intron 25.0%
!! AAAGTGCCATTAAAATTGTT+GGG + chr1_3:20041830-20041849 Msa0108490:intron 25.0%
!! AACTTTCCCAACAATTTTAA+TGG - chr1_3:20041839-20041858 None:intergenic 25.0%
!! TTCAATTTTCAGTTTGGATT+TGG - chr1_3:20042080-20042099 None:intergenic 25.0%
!! AAGGATAACTTTTATCAATG+AGG - chr1_3:20042125-20042144 None:intergenic 25.0%
! ACAACTATCAATGTAAAACA+TGG - chr1_3:20042167-20042186 None:intergenic 25.0%
!! TTTACATTGATAGTTGTGTT+TGG + chr1_3:20042170-20042189 Msa0108490:intron 25.0%
!! CATTATCTTTTATCATTTCC+CGG - chr1_3:20042394-20042413 None:intergenic 25.0%
!! AAATTGTCAATTGTGTTGTT+TGG - chr1_3:20042583-20042602 None:intergenic 25.0%
!! AACATAATGGAGAAGTAAAT+GGG - chr1_3:20042663-20042682 None:intergenic 25.0%
!! AAACATAATGGAGAAGTAAA+TGG - chr1_3:20042664-20042683 None:intergenic 25.0%
GATATGATTACGAAAGAGAA+CGG - chr1_3:20037765-20037784 None:intergenic 30.0%
ACAATTCATCGAACATGTAA+GGG - chr1_3:20037991-20038010 None:intergenic 30.0%
! AGTGAAATTGTTAGTCTGTA+AGG + chr1_3:20038067-20038086 Msa0108490:intron 30.0%
! GTGAAATTGTTAGTCTGTAA+GGG + chr1_3:20038068-20038087 Msa0108490:intron 30.0%
TTATTGATGCAAATTCGGTT+AGG + chr1_3:20038105-20038124 Msa0108490:intron 30.0%
ACCGAAACCAAAAAAATTCA+AGG + chr1_3:20038292-20038311 Msa0108490:intron 30.0%
CCAAAAAAATTCAAGGTTTC+GGG + chr1_3:20038299-20038318 Msa0108490:intron 30.0%
! TGGTACACACTTTTGTTAAA+GGG - chr1_3:20038396-20038415 None:intergenic 30.0%
CAACACTAGTGTTTATATAG+TGG - chr1_3:20038439-20038458 None:intergenic 30.0%
AGAATTATAAGGAGACACAA+TGG + chr1_3:20038527-20038546 Msa0108490:intron 30.0%
! TAATCAATTTAGGGTCTGTT+TGG + chr1_3:20038579-20038598 Msa0108490:intron 30.0%
!! AGTAATAGAGGATTTTTGGA+TGG + chr1_3:20038651-20038670 Msa0108490:intron 30.0%
!! GTAATAGAGGATTTTTGGAT+GGG + chr1_3:20038652-20038671 Msa0108490:intron 30.0%
CTCAAAATATGTATTGAACG+GGG + chr1_3:20038731-20038750 Msa0108490:intron 30.0%
TCAAAATATGTATTGAACGG+GGG + chr1_3:20038732-20038751 Msa0108490:intron 30.0%
CTTCTAACACTACTTCTTTA+GGG - chr1_3:20039161-20039180 None:intergenic 30.0%
TCTTCTAACACTACTTCTTT+AGG - chr1_3:20039162-20039181 None:intergenic 30.0%
TTGTATATACATGCACAAAG+AGG + chr1_3:20039921-20039940 Msa0108490:intron 30.0%
TGTATATACATGCACAAAGA+GGG + chr1_3:20039922-20039941 Msa0108490:intron 30.0%
TCTACAAAATGTTACTGTAC+TGG + chr1_3:20040204-20040223 Msa0108490:intron 30.0%
!!! TTACTGTACTGGTTATTTTC+AGG + chr1_3:20040215-20040234 Msa0108490:intron 30.0%
!!! TACTGTACTGGTTATTTTCA+GGG + chr1_3:20040216-20040235 Msa0108490:intron 30.0%
! TCTGTGCATTATCTGTTTTA+AGG - chr1_3:20040564-20040583 None:intergenic 30.0%
! TCCAAACTAATATTGACTGT+GGG - chr1_3:20040660-20040679 None:intergenic 30.0%
!! TTGGAAAAAAGTACTTACTC+TGG + chr1_3:20041055-20041074 Msa0108490:intron 30.0%
!! AGTACTTACTCTGGAATAAT+CGG + chr1_3:20041064-20041083 Msa0108490:intron 30.0%
GTCAATGTAAAAATTGCCTT+TGG + chr1_3:20041086-20041105 Msa0108490:intron 30.0%
! TTTTCATGTTTGTCAAACAG+TGG - chr1_3:20041140-20041159 None:intergenic 30.0%
TTTGTCAAACAACATGATGT+TGG - chr1_3:20041235-20041254 None:intergenic 30.0%
! AAGTACATTTTGCCTGAATA+AGG + chr1_3:20041367-20041386 Msa0108490:intron 30.0%
AGAAAGATGAGATATTGTCT+AGG - chr1_3:20041425-20041444 None:intergenic 30.0%
TCTAATAATAGGGGTAAAAG+AGG + chr1_3:20041467-20041486 Msa0108490:intron 30.0%
CTAATAATAGGGGTAAAAGA+GGG + chr1_3:20041468-20041487 Msa0108490:intron 30.0%
CTTGTGATGAGATTATGAAA+TGG - chr1_3:20041711-20041730 None:intergenic 30.0%
! AACATTTAAAGCATAGTGGA+TGG + chr1_3:20041761-20041780 Msa0108490:intron 30.0%
!! ACATTTAAAGCATAGTGGAT+GGG + chr1_3:20041762-20041781 Msa0108490:intron 30.0%
TGTATGAGAGACTTAATGTT+TGG + chr1_3:20041890-20041909 Msa0108490:intron 30.0%
AACCAACTAGATAATAAGCT+CGG + chr1_3:20041921-20041940 Msa0108490:intron 30.0%
! AACAGTTAGCTTAATGTGTT+TGG + chr1_3:20041962-20041981 Msa0108490:intron 30.0%
!! TGATTGATAGCTCTAATTTG+TGG + chr1_3:20042212-20042231 Msa0108490:intron 30.0%
AGTATTCCAATTCACTTTCT+GGG + chr1_3:20042535-20042554 Msa0108490:three_prime_UTR 30.0%
!! TCCAACAAGTTGGTAAACAA+AGG + chr1_3:20037550-20037569 Msa0108490:five_prime_UTR 35.0%
! TCCTTTGTTTACCAACTTGT+TGG - chr1_3:20037554-20037573 None:intergenic 35.0%
!! GTGGATTTGTTGTTACTGTA+AGG - chr1_3:20037743-20037762 None:intergenic 35.0%
CATTCAATCTATGCAGCAAA+AGG + chr1_3:20037937-20037956 Msa0108490:CDS 35.0%
CAATTCATCGAACATGTAAG+GGG - chr1_3:20037990-20038009 None:intergenic 35.0%
GACAATTCATCGAACATGTA+AGG - chr1_3:20037992-20038011 None:intergenic 35.0%
! AATTGTTAGTCTGTAAGGGT+TGG + chr1_3:20038072-20038091 Msa0108490:intron 35.0%
! ATTGTTAGTCTGTAAGGGTT+GGG + chr1_3:20038073-20038092 Msa0108490:intron 35.0%
TATAAGCGACGAGCTAAAAT+TGG + chr1_3:20038154-20038173 Msa0108490:intron 35.0%
AATGTGATCTCGCCTATTTA+AGG + chr1_3:20038222-20038241 Msa0108490:intron 35.0%
!!! CCCGAAACCTTGAATTTTTT+TGG - chr1_3:20038302-20038321 None:intergenic 35.0%
! GTGGTACACACTTTTGTTAA+AGG - chr1_3:20038397-20038416 None:intergenic 35.0%
! AGTGTTTATATAGTGGAGGT+AGG - chr1_3:20038432-20038451 None:intergenic 35.0%
CACTAGTGTTTATATAGTGG+AGG - chr1_3:20038436-20038455 None:intergenic 35.0%
CCTTATAATTCTGTTGGAGT+AGG - chr1_3:20038519-20038538 None:intergenic 35.0%
CCTACTCCAACAGAATTATA+AGG + chr1_3:20038516-20038535 Msa0108490:intron 35.0%
GTGTCTCCTTATAATTCTGT+TGG - chr1_3:20038525-20038544 None:intergenic 35.0%
GTCTGTTTGGAAGTTTATGT+GGG + chr1_3:20038592-20038611 Msa0108490:intron 35.0%
TCTGTTTGGAAGTTTATGTG+GGG + chr1_3:20038593-20038612 Msa0108490:intron 35.0%
! CGGAAGTAATAGAGGATTTT+TGG + chr1_3:20038647-20038666 Msa0108490:intron 35.0%
TTAATTCCAGATTGGGAGAT+TGG - chr1_3:20039096-20039115 None:intergenic 35.0%
GAGCAGTTTAATTCCAGATT+GGG - chr1_3:20039103-20039122 None:intergenic 35.0%
AGAGCAGTTTAATTCCAGAT+TGG - chr1_3:20039104-20039123 None:intergenic 35.0%
ATAGGTAGGAGCAATGATTT+AGG + chr1_3:20039331-20039350 Msa0108490:intron 35.0%
CTCAAAATTGAAGGAAGATC+TGG - chr1_3:20039646-20039665 None:intergenic 35.0%
! CAGATCTTCCTTCAATTTTG+AGG + chr1_3:20039644-20039663 Msa0108490:intron 35.0%
!! CGACTTGCTCTAAAAGATAA+AGG + chr1_3:20039777-20039796 Msa0108490:intron 35.0%
! TCATCAAAGCATCAAACTCT+AGG - chr1_3:20040363-20040382 None:intergenic 35.0%
AATTACAGCTAAGTGATACG+AGG + chr1_3:20040478-20040497 Msa0108490:intron 35.0%
! ACTAATATTGACTGTGGGTA+AGG - chr1_3:20040655-20040674 None:intergenic 35.0%
ACCCACAGTCAATATTAGTT+TGG + chr1_3:20040656-20040675 Msa0108490:intron 35.0%
! CTCCAAACTAATATTGACTG+TGG - chr1_3:20040661-20040680 None:intergenic 35.0%
AAACACCTAAATTCCCTGTT+TGG + chr1_3:20040696-20040715 Msa0108490:intron 35.0%
AACACCTAAATTCCCTGTTT+GGG + chr1_3:20040697-20040716 Msa0108490:intron 35.0%
AGTTAGCACATGATGATTGA+TGG + chr1_3:20040935-20040954 Msa0108490:intron 35.0%
GTTCATTTCAACGCTAGAAA+TGG - chr1_3:20040987-20041006 None:intergenic 35.0%
GCGTTGAAATGAACAGATAT+TGG + chr1_3:20040993-20041012 Msa0108490:intron 35.0%
!! TTTGCTTTTACTTCCCACAA+GGG - chr1_3:20041022-20041041 None:intergenic 35.0%
!! TTTTGCTTTTACTTCCCACA+AGG - chr1_3:20041023-20041042 None:intergenic 35.0%
! TTTGTCAAACAGTGGTGTTT+TGG - chr1_3:20041132-20041151 None:intergenic 35.0%
TGGATTCAAATCACACTATC+TGG + chr1_3:20041194-20041213 Msa0108490:intron 35.0%
TGGATTCAAATCACACTATC+TGG + chr1_3:20041194-20041213 Msa0108490:intron 35.0%
CAAGTGTGATGTAATGTACA+TGG + chr1_3:20041576-20041595 Msa0108490:intron 35.0%
TACATGGAATAGTGACATTG+CGG + chr1_3:20041592-20041611 Msa0108490:intron 35.0%
!! GCTAACTGTTATTTCATGAG+AGG - chr1_3:20041952-20041971 None:intergenic 35.0%
GAATTGCATATGTAGCTGAA+TGG - chr1_3:20042013-20042032 None:intergenic 35.0%
ATTCTTCTCCAAAGTTTGAG+AGG + chr1_3:20042029-20042048 Msa0108490:intron 35.0%
CTCAATTTCCTCTCAAACTT+TGG - chr1_3:20042040-20042059 None:intergenic 35.0%
GATGGTCTATAAAGCCATAT+GGG + chr1_3:20042302-20042321 Msa0108490:CDS 35.0%
! TATCTTTTATCATTTCCCGG+CGG - chr1_3:20042391-20042410 None:intergenic 35.0%
CAGTATTCCAATTCACTTTC+TGG + chr1_3:20042534-20042553 Msa0108490:three_prime_UTR 35.0%
ACTGTAAGGTCGAACCAAAA+CGG - chr1_3:20037729-20037748 None:intergenic 40.0%
ATGATTACGAAAGAGAACGG+TGG - chr1_3:20037762-20037781 None:intergenic 40.0%
! TAGTTTGTGAAGTGGATCTG+AGG - chr1_3:20037793-20037812 None:intergenic 40.0%
! GAGAGAAGTAGTTTGTGAAG+TGG - chr1_3:20037801-20037820 None:intergenic 40.0%
CTTGCGAATAGAAGTAACAG+AGG - chr1_3:20037864-20037883 None:intergenic 40.0%
GCTACTAATGTAAACGATGC+TGG + chr1_3:20037896-20037915 Msa0108490:CDS 40.0%
TGCTGCATAGATTGAATGAG+AGG - chr1_3:20037935-20037954 None:intergenic 40.0%
ATGCAAATTCGGTTAGGTAG+AGG + chr1_3:20038111-20038130 Msa0108490:intron 40.0%
CTCTTCTATGTGAGACTTGT+AGG + chr1_3:20038467-20038486 Msa0108490:intron 40.0%
GGTCTGTTTGGAAGTTTATG+TGG + chr1_3:20038591-20038610 Msa0108490:intron 40.0%
TTTGGAAGTTTATGTGGGGA+GGG + chr1_3:20038597-20038616 Msa0108490:intron 40.0%
GGGAGGGCTTGAAAAAAAAA+AGG + chr1_3:20038618-20038637 Msa0108490:intron 40.0%
!! ATAGAGGATTTTTGGATGGG+AGG + chr1_3:20038655-20038674 Msa0108490:intron 40.0%
!! TAGAGGATTTTTGGATGGGA+GGG + chr1_3:20038656-20038675 Msa0108490:intron 40.0%
! ATGTATTGAACGGGGGATTT+TGG + chr1_3:20038739-20038758 Msa0108490:intron 40.0%
TCTCTAGCGTTGTGTGATTT+AGG - chr1_3:20038838-20038857 None:intergenic 40.0%
!! TTAGCTTTGCTATGCATAGC+TGG - chr1_3:20038929-20038948 None:intergenic 40.0%
GAGTATAAGAGCAGAAACAG+AGG + chr1_3:20039180-20039199 Msa0108490:intron 40.0%
TGCAGAAACAGTCTCTGTAA+AGG + chr1_3:20039810-20039829 Msa0108490:CDS 40.0%
GTCTCTGTAAAGGATGCTTA+TGG + chr1_3:20039820-20039839 Msa0108490:CDS 40.0%
GTAAAGGATGCTTATGGTGA+CGG + chr1_3:20039826-20039845 Msa0108490:CDS 40.0%
! TCGGTTTTTCGTTACCTTTG+TGG + chr1_3:20039892-20039911 Msa0108490:intron 40.0%
!! ATTTTCAGGGCCACTTTCTA+TGG + chr1_3:20040229-20040248 Msa0108490:intron 40.0%
AAAAGAGAGAAAGCAACCGT+TGG + chr1_3:20040420-20040439 Msa0108490:intron 40.0%
ATACTTCATCCTCCAACCAA+CGG - chr1_3:20040439-20040458 None:intergenic 40.0%
AGAAAAGTCCTTGAAGAAGC+AGG + chr1_3:20040618-20040637 Msa0108490:intron 40.0%
! ATATTGACTGTGGGTAAGGA+GGG - chr1_3:20040651-20040670 None:intergenic 40.0%
! AATATTGACTGTGGGTAAGG+AGG - chr1_3:20040652-20040671 None:intergenic 40.0%
! TGCCATGTGCATTTGAAGTA+GGG + chr1_3:20040720-20040739 Msa0108490:intron 40.0%
! ATTTGAAGTAGGGTCACCAT+GGG + chr1_3:20040730-20040749 Msa0108490:intron 40.0%
GTGCAAGCAGTCTTTATAGA+TGG + chr1_3:20040876-20040895 Msa0108490:intron 40.0%
ATGGTATGTTATGTCTGCAG+AGG - chr1_3:20040968-20040987 None:intergenic 40.0%
!! TTGCTTTTACTTCCCACAAG+GGG - chr1_3:20041021-20041040 None:intergenic 40.0%
CTTATGCACGACATTTCCAA+AGG - chr1_3:20041105-20041124 None:intergenic 40.0%
GGCAAAATGTACTTGCAAGA+AGG - chr1_3:20041361-20041380 None:intergenic 40.0%
! ATTTGTTAGCACGGCTTTGA+GGG - chr1_3:20041504-20041523 None:intergenic 40.0%
CAATAGCTAGGCTTGAATGT+TGG + chr1_3:20041534-20041553 Msa0108490:intron 40.0%
TACATCACACTTGTGACTTC+AGG - chr1_3:20041569-20041588 None:intergenic 40.0%
CACCGAGCTTATTATCTAGT+TGG - chr1_3:20041926-20041945 None:intergenic 40.0%
AAGTTATCCTTGACACCTTG+AGG + chr1_3:20042134-20042153 Msa0108490:intron 40.0%
GGATGGTCTATAAAGCCATA+TGG + chr1_3:20042301-20042320 Msa0108490:CDS 40.0%
TGCATGTGAACACATTGCAA+TGG - chr1_3:20042508-20042527 None:intergenic 40.0%
CAATATCCAGCAATGTTCTG+CGG + chr1_3:20042617-20042636 Msa0108490:three_prime_UTR 40.0%
AAGAGCTTTGCGGAGTAAAG+TGG - chr1_3:20037705-20037724 None:intergenic 45.0%
CTGTAAGGTCGAACCAAAAC+GGG - chr1_3:20037728-20037747 None:intergenic 45.0%
AATTCGGTTAGGTAGAGGTC+AGG + chr1_3:20038116-20038135 Msa0108490:intron 45.0%
TGCCAAGAGTTGACTAATGG+AGG + chr1_3:20038253-20038272 Msa0108490:intron 45.0%
GCCAAGAGTTGACTAATGGA+GGG + chr1_3:20038254-20038273 Msa0108490:intron 45.0%
ACCCTCCATTAGTCAACTCT+TGG - chr1_3:20038258-20038277 None:intergenic 45.0%
! AAAAGTGTGTACCACACCCT+CGG + chr1_3:20038402-20038421 Msa0108490:intron 45.0%
CTGTTGGAGTAGGTGTGTTT+GGG - chr1_3:20038509-20038528 None:intergenic 45.0%
TCTGTTGGAGTAGGTGTGTT+TGG - chr1_3:20038510-20038529 None:intergenic 45.0%
GTTTGGAAGTTTATGTGGGG+AGG + chr1_3:20038596-20038615 Msa0108490:intron 45.0%
TTGGAAGTTTATGTGGGGAG+GGG + chr1_3:20038598-20038617 Msa0108490:intron 45.0%
GGATGAAGCGGAAGTAATAG+AGG + chr1_3:20038639-20038658 Msa0108490:intron 45.0%
!! ATTTTTGGATGGGAGGGCTT+TGG + chr1_3:20038662-20038681 Msa0108490:intron 45.0%
! TTTTTGGATGGGAGGGCTTT+GGG + chr1_3:20038663-20038682 Msa0108490:intron 45.0%
! TATTGAACGGGGGATTTTGG+AGG + chr1_3:20038742-20038761 Msa0108490:intron 45.0%
! ATTGAACGGGGGATTTTGGA+GGG + chr1_3:20038743-20038762 Msa0108490:intron 45.0%
TTTAGGTAGCTGGTGGGATA+AGG - chr1_3:20038821-20038840 None:intergenic 45.0%
GTGTGATTTAGGTAGCTGGT+GGG - chr1_3:20038827-20038846 None:intergenic 45.0%
TGTGTGATTTAGGTAGCTGG+TGG - chr1_3:20038828-20038847 None:intergenic 45.0%
CGTTGTGTGATTTAGGTAGC+TGG - chr1_3:20038831-20038850 None:intergenic 45.0%
TTCCAGATTGGGAGATTGGA+GGG - chr1_3:20039092-20039111 None:intergenic 45.0%
ATTCCAGATTGGGAGATTGG+AGG - chr1_3:20039093-20039112 None:intergenic 45.0%
AGTTGTACGCTGTTGTGAGT+AGG - chr1_3:20039699-20039718 None:intergenic 45.0%
CTTCAGTCAGCCATAGAAAG+TGG - chr1_3:20040242-20040261 None:intergenic 45.0%
CACTTTCTATGGCTGACTGA+AGG + chr1_3:20040240-20040259 Msa0108490:intron 45.0%
GAATATCGCCTGCTTCTTCA+AGG - chr1_3:20040629-20040648 None:intergenic 45.0%
! GTGCCATGTGCATTTGAAGT+AGG + chr1_3:20040719-20040738 Msa0108490:intron 45.0%
GACCCTACTTCAAATGCACA+TGG - chr1_3:20040725-20040744 None:intergenic 45.0%
! CATTTGAAGTAGGGTCACCA+TGG + chr1_3:20040729-20040748 Msa0108490:intron 45.0%
TTGAGTTTGAGCTTGACCCA+TGG - chr1_3:20040749-20040768 None:intergenic 45.0%
! CATTTGTTAGCACGGCTTTG+AGG - chr1_3:20041505-20041524 None:intergenic 45.0%
TTGCGGCGTGATTGAACAAA+TGG + chr1_3:20041609-20041628 Msa0108490:intron 45.0%
!! AGCATAGTGGATGGGATGAA+AGG + chr1_3:20041770-20041789 Msa0108490:intron 45.0%
GCTGAATGGTGAGGAATAAG+CGG - chr1_3:20041999-20042018 None:intergenic 45.0%
GCATATGTAGCTGAATGGTG+AGG - chr1_3:20042008-20042027 None:intergenic 45.0%
AAACATGGAACAGTGCCTCA+AGG - chr1_3:20042152-20042171 None:intergenic 45.0%
AATCAGCCGTGAATAGGCAA+AGG + chr1_3:20042280-20042299 Msa0108490:CDS 45.0%
GACCATCCTTTGCCTATTCA+CGG - chr1_3:20042289-20042308 None:intergenic 45.0%
GGTCTATAAAGCCATATGGG+AGG + chr1_3:20042305-20042324 Msa0108490:CDS 45.0%
!! ACTCTGAAGTTCCTCCCATA+TGG - chr1_3:20042319-20042338 None:intergenic 45.0%
GCAACTCCCAGAAAGTGAAT+TGG - chr1_3:20042544-20042563 None:intergenic 45.0%
AACAAACCGCAGAACATTGC+TGG - chr1_3:20042626-20042645 None:intergenic 45.0%
! TTCTACGCTGTGTTGCTGCT+GGG - chr1_3:20037638-20037657 None:intergenic 50.0%
! TTTCTACGCTGTGTTGCTGC+TGG - chr1_3:20037639-20037658 None:intergenic 50.0%
GCTTTGCGGAGTAAAGTGGT+GGG - chr1_3:20037701-20037720 None:intergenic 50.0%
AGCTTTGCGGAGTAAAGTGG+TGG - chr1_3:20037702-20037721 None:intergenic 50.0%
CCAAAACGGGAAGAGCTTTG+CGG - chr1_3:20037715-20037734 None:intergenic 50.0%
TAGTCTGTAAGGGTTGGGAC+TGG + chr1_3:20038078-20038097 Msa0108490:intron 50.0%
AGTCTGTAAGGGTTGGGACT+GGG + chr1_3:20038079-20038098 Msa0108490:intron 50.0%
GGCAGCGTTGCTCCTTAAAT+AGG - chr1_3:20038237-20038256 None:intergenic 50.0%
CGCTGCCAAGAGTTGACTAA+TGG + chr1_3:20038250-20038269 Msa0108490:intron 50.0%
AAAGTGTGTACCACACCCTC+GGG + chr1_3:20038403-20038422 Msa0108490:intron 50.0%
AAGTTTATGTGGGGAGGGGA+GGG + chr1_3:20038602-20038621 Msa0108490:intron 50.0%
! TTTTGGATGGGAGGGCTTTG+GGG + chr1_3:20038664-20038683 Msa0108490:intron 50.0%
! AAGTTTTACGTTGACCGCCG+AGG + chr1_3:20038865-20038884 Msa0108490:intron 50.0%
GAGAGGGTTGTGTTAGACCT+CGG - chr1_3:20038885-20038904 None:intergenic 50.0%
CACAACCCTCTCCTGTTAAC+CGG + chr1_3:20038893-20038912 Msa0108490:intron 50.0%
ACAACCCTCTCCTGTTAACC+GGG + chr1_3:20038894-20038913 Msa0108490:intron 50.0%
CTATGCATAGCTGGTCCCAA+AGG - chr1_3:20038920-20038939 None:intergenic 50.0%
ATTGGAGGGAGGGAATTGGA+GGG - chr1_3:20039078-20039097 None:intergenic 50.0%
AGATTGGGAGATTGGAGGGA+GGG - chr1_3:20039088-20039107 None:intergenic 50.0%
GAGAGAAAGCAACCGTTGGT+TGG + chr1_3:20040424-20040443 Msa0108490:intron 50.0%
! AGAAAGCAACCGTTGGTTGG+AGG + chr1_3:20040427-20040446 Msa0108490:intron 50.0%
GGCACCCAAACAGGGAATTT+AGG - chr1_3:20040704-20040723 None:intergenic 50.0%
ATGCACATGGCACCCAAACA+GGG - chr1_3:20040712-20040731 None:intergenic 50.0%
AATGCACATGGCACCCAAAC+AGG - chr1_3:20040713-20040732 None:intergenic 50.0%
ACAGATATTGGCACCCCTTG+TGG + chr1_3:20041005-20041024 Msa0108490:intron 50.0%
CAGATATTGGCACCCCTTGT+GGG + chr1_3:20041006-20041025 Msa0108490:intron 50.0%
! AACAGTGCCTCAAGGTGTCA+AGG - chr1_3:20042144-20042163 None:intergenic 50.0%
! TGTTGTATCGACAGCCTTCG+AGG + chr1_3:20042254-20042273 Msa0108490:CDS 50.0%
! GTTGTATCGACAGCCTTCGA+GGG + chr1_3:20042255-20042274 Msa0108490:CDS 50.0%
AGGGACAATCAGCCGTGAAT+AGG + chr1_3:20042274-20042293 Msa0108490:CDS 50.0%
AGCCGTGAATAGGCAAAGGA+TGG + chr1_3:20042284-20042303 Msa0108490:CDS 50.0%
! CCGCAAAGCTCTTCCCGTTT+TGG + chr1_3:20037712-20037731 Msa0108490:CDS 55.0%
GGTTAGGTAGAGGTCAGGCA+GGG + chr1_3:20038121-20038140 Msa0108490:intron 55.0%
GTTAGGTAGAGGTCAGGCAG+GGG + chr1_3:20038122-20038141 Msa0108490:intron 55.0%
GAAGTTTATGTGGGGAGGGG+AGG + chr1_3:20038601-20038620 Msa0108490:intron 55.0%
! TTTGGATGGGAGGGCTTTGG+GGG + chr1_3:20038665-20038684 Msa0108490:intron 55.0%
GTAGCTGGTGGGATAAGGCT+TGG - chr1_3:20038816-20038835 None:intergenic 55.0%
AGGGTTGTGTTAGACCTCGG+CGG - chr1_3:20038882-20038901 None:intergenic 55.0%
AAGGCCCGGTTAACAGGAGA+GGG - chr1_3:20038901-20038920 None:intergenic 55.0%
AAAGGCCCGGTTAACAGGAG+AGG - chr1_3:20038902-20038921 None:intergenic 55.0%
TCTCCTGTTAACCGGGCCTT+TGG + chr1_3:20038901-20038920 Msa0108490:intron 55.0%
CTCCTGTTAACCGGGCCTTT+GGG + chr1_3:20038902-20038921 Msa0108490:intron 55.0%
GATTGGAGGGAGGGAATTGG+AGG - chr1_3:20039079-20039098 None:intergenic 55.0%
GGAGATTGGAGGGAGGGAAT+TGG - chr1_3:20039082-20039101 None:intergenic 55.0%
CAGATTGGGAGATTGGAGGG+AGG - chr1_3:20039089-20039108 None:intergenic 55.0%
CTCCCTCCAATCTCCCAATC+TGG + chr1_3:20039087-20039106 Msa0108490:intron 55.0%
!! ATGGTGACGGACGCCATGTT+AGG + chr1_3:20039839-20039858 Msa0108490:CDS 55.0%
! GGCTGCTTCAGCAGGAGTTT+TGG - chr1_3:20042370-20042389 None:intergenic 55.0%
! ACGCTGTGTTGCTGCTGGGA+GGG - chr1_3:20037634-20037653 None:intergenic 60.0%
! TACGCTGTGTTGCTGCTGGG+AGG - chr1_3:20037635-20037654 None:intergenic 60.0%
CGGTTAGGTAGAGGTCAGGC+AGG + chr1_3:20038120-20038139 Msa0108490:intron 60.0%
TACGCGCGTCGTTCGAGCTT+GGG - chr1_3:20038342-20038361 None:intergenic 60.0%
ATACGCGCGTCGTTCGAGCT+TGG - chr1_3:20038343-20038362 None:intergenic 60.0%
AAGCTCGAACGACGCGCGTA+TGG + chr1_3:20038342-20038361 Msa0108490:intron 60.0%
AGTGGAGGTAGGACTCCCGA+GGG - chr1_3:20038421-20038440 None:intergenic 60.0%
TAGTGGAGGTAGGACTCCCG+AGG - chr1_3:20038422-20038441 None:intergenic 60.0%
GTCCCAAAGGCCCGGTTAAC+AGG - chr1_3:20038907-20038926 None:intergenic 60.0%
CATAGCTGGTCCCAAAGGCC+CGG - chr1_3:20038915-20038934 None:intergenic 60.0%
CACGGCTGATTGTCCCTCGA+AGG - chr1_3:20042271-20042290 None:intergenic 60.0%
! CGCTGTGTTGCTGCTGGGAG+GGG - chr1_3:20037633-20037652 None:intergenic 65.0%
AGGTAGGACTCCCGAGGGTG+TGG - chr1_3:20038416-20038435 None:intergenic 65.0%
ACTCCTGCTGAAGCAGCCGC+CGG + chr1_3:20042372-20042391 Msa0108490:CDS 65.0%
CTCCTGCTGAAGCAGCCGCC+GGG + chr1_3:20042373-20042392 Msa0108490:CDS 70.0%
TTCCCGGCGGCTGCTTCAGC+AGG - chr1_3:20042378-20042397 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 20037544 20042715 20037544 ID=Msa0108490;Name=Msa0108490
chr1_3 mRNA 20037544 20042715 20037544 ID=Msa0108490-mRNA-1;Parent=Msa0108490;Name=Msa0108490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=124|1|1|1|1|1|3|314|170
chr1_3 exon 20037544 20037958 20037544 ID=Msa0108490-mRNA-1:exon:7221;Parent=Msa0108490-mRNA-1
chr1_3 exon 20039793 20039860 20039793 ID=Msa0108490-mRNA-1:exon:7222;Parent=Msa0108490-mRNA-1
chr1_3 exon 20042248 20042715 20042248 ID=Msa0108490-mRNA-1:exon:7223;Parent=Msa0108490-mRNA-1
chr1_3 five_prime_UTR 20037544 20037667 20037544 ID=Msa0108490-mRNA-1:five_prime_utr;Parent=Msa0108490-mRNA-1
chr1_3 CDS 20037668 20037958 20037668 ID=Msa0108490-mRNA-1:cds;Parent=Msa0108490-mRNA-1
chr1_3 CDS 20039793 20039860 20039793 ID=Msa0108490-mRNA-1:cds;Parent=Msa0108490-mRNA-1
chr1_3 CDS 20042248 20042401 20042248 ID=Msa0108490-mRNA-1:cds;Parent=Msa0108490-mRNA-1
chr1_3 three_prime_UTR 20042402 20042715 20042402 ID=Msa0108490-mRNA-1:three_prime_utr;Parent=Msa0108490-mRNA-1
Gene Sequence

>Msa0108490

ATGCGGGCACACGTTTTCTCACTTTCAGCACCCACCACTTTACTCCGCAAAGCTCTTCCCGTTTTGGTTCGACCTTACAGTAACAACAAATCCACCGTTCTCTTTCGTAATCATATCTCGTTCCTCAGATCCACTTCACAAACTACTTCTCTCTTTCGTGATATTCCTAAACATGATGAGAAATTATTGTTCACCTCTGTTACTTCTATTCGCAAGTTTACTTCACGCGCTACTAATGTAAACGATGCTGGTTCTATTGATTTGCCTCTCATTCAATCTATGCAGCAAAAGATAAAGGAACAACTCAATGCAGAAACAGTCTCTGTAAAGGATGCTTATGGTGACGGACGCCATGTTAGCATTGATGTTGTATCGACAGCCTTCGAGGGACAATCAGCCGTGAATAGGCAAAGGATGGTCTATAAAGCCATATGGGAGGAACTTCAGAGTGCAGTTCATGCAGTTGATCAGATGACGACCAAAACTCCTGCTGAAGCAGCCGCCGGGAAATGA

Protein sequence

>Msa0108490

MRAHVFSLSAPTTLLRKALPVLVRPYSNNKSTVLFRNHISFLRSTSQTTSLFRDIPKHDEKLLFTSVTSIRKFTSRATNVNDAGSIDLPLIQSMQQKIKEQLNAETVSVKDAYGDGRHVSIDVVSTAFEGQSAVNRQRMVYKAIWEELQSAVHAVDQMTTKTPAEAAAGK*