Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012100 | sp|Q9ZU95|NUD17_ARATH | 67.485 | 163 | 52 | 1 | 1 | 163 | 6 | 167 | 4.20e-79 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012100 | Msa0061200 | 0.802493 | 5.465938e-49 | -8.615850e-47 |
| Msa0012100 | Msa0071480 | 0.813590 | 2.370130e-51 | -8.615850e-47 |
| Msa0012100 | Msa0105750 | 0.811015 | 8.649114e-51 | -8.615850e-47 |
| Msa0012100 | Msa0119440 | 0.833724 | 4.525294e-56 | -8.615850e-47 |
| Msa0012100 | Msa0152560 | 0.802448 | 5.584411e-49 | -8.615850e-47 |
| Msa0012100 | Msa0162690 | 0.838971 | 2.094444e-57 | -8.615850e-47 |
| Msa0012100 | Msa0187830 | 0.815081 | 1.109884e-51 | -8.615850e-47 |
| Msa0012100 | Msa0201570 | 0.803132 | 4.032989e-49 | -8.615850e-47 |
| Msa0012100 | Msa0276280 | 0.813048 | 3.117857e-51 | -8.615850e-47 |
| Msa0012100 | Msa0347750 | 0.809659 | 1.696139e-50 | -8.615850e-47 |
| Msa0012100 | Msa0382490 | 0.815842 | 7.514906e-52 | -8.615850e-47 |
| Msa0012100 | Msa0418400 | 0.808349 | 3.234994e-50 | -8.615850e-47 |
| Msa0012100 | Msa0432670 | 0.800691 | 1.279645e-48 | -8.615850e-47 |
| Msa0012100 | Msa0472770 | 0.819263 | 1.273069e-52 | -8.615850e-47 |
| Msa0012100 | Msa0748660 | 0.828385 | 9.259148e-55 | -8.615850e-47 |
| Msa0012100 | Msa0758250 | 0.814915 | 1.207732e-51 | -8.615850e-47 |
| Msa0012100 | Msa0775920 | 0.801295 | 9.631531e-49 | -8.615850e-47 |
| Msa0012100 | Msa0813260 | 0.815083 | 1.108429e-51 | -8.615850e-47 |
| Msa0012100 | Msa1225100 | 0.823659 | 1.229946e-53 | -8.615850e-47 |
| Msa0012100 | Msa1262020 | 0.814090 | 1.839024e-51 | -8.615850e-47 |
| Msa0012100 | Msa1280150 | 0.818019 | 2.438273e-52 | -8.615850e-47 |
| Msa0012100 | Msa1329870 | 0.824157 | 9.397283e-54 | -8.615850e-47 |
| Msa0012100 | Msa1391550 | 0.803593 | 3.237371e-49 | -8.615850e-47 |
| Msa0012100 | Msa1405220 | 0.830181 | 3.393106e-55 | -8.615850e-47 |
| Msa0012100 | Msa1421900 | 0.805841 | 1.098418e-49 | -8.615850e-47 |
| Msa0012100 | Msa1424630 | 0.809342 | 1.984506e-50 | -8.615850e-47 |
| Msa0012100 | Msa1458340 | 0.809348 | 1.978159e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012100 | MtrunA17_Chr1g0161131 | 96.364 | 165 | 6 | 0 | 1 | 165 | 1 | 165 | 8.52e-119 | 332 |
| Msa0012100 | MtrunA17_Chr8g0391621 | 80.380 | 158 | 31 | 0 | 1 | 158 | 1 | 158 | 1.99e-95 | 273 |
| Msa0012100 | MtrunA17_Chr3g0110281 | 67.485 | 163 | 50 | 2 | 1 | 161 | 32 | 193 | 8.35e-76 | 225 |
| Msa0012100 | MtrunA17_Chr5g0434521 | 59.880 | 167 | 62 | 3 | 1 | 165 | 10 | 173 | 6.18e-65 | 197 |
| Msa0012100 | MtrunA17_Chr6g0479111 | 60.377 | 159 | 59 | 3 | 1 | 158 | 72 | 227 | 2.09e-64 | 197 |
| Msa0012100 | MtrunA17_Chr8g0353331 | 47.500 | 160 | 76 | 3 | 1 | 153 | 1 | 159 | 3.49e-43 | 141 |
| Msa0012100 | MtrunA17_Chr7g0252391 | 46.875 | 160 | 74 | 4 | 1 | 150 | 1 | 159 | 6.57e-36 | 124 |
| Msa0012100 | MtrunA17_Chr1g0189471 | 46.154 | 65 | 33 | 2 | 1 | 64 | 1 | 64 | 4.16e-13 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012100 | AT2G01670.1 | 67.485 | 163 | 52 | 1 | 1 | 163 | 6 | 167 | 4.27e-80 | 235 |
| Msa0012100 | AT1G14860.1 | 70.440 | 159 | 46 | 1 | 1 | 159 | 1 | 158 | 7.69e-80 | 234 |
| Msa0012100 | AT1G18300.1 | 55.128 | 156 | 69 | 1 | 1 | 155 | 40 | 195 | 3.09e-62 | 191 |
| Msa0012100 | AT1G73540.1 | 55.414 | 157 | 65 | 2 | 1 | 156 | 41 | 193 | 1.67e-60 | 186 |
| Msa0012100 | AT1G12880.1 | 46.108 | 167 | 76 | 4 | 1 | 154 | 1 | 166 | 3.68e-38 | 129 |
| Msa0012100 | AT3G26690.1 | 44.048 | 168 | 79 | 4 | 1 | 154 | 1 | 167 | 3.48e-37 | 127 |
| Msa0012100 | AT3G26690.2 | 44.048 | 168 | 79 | 4 | 1 | 154 | 1 | 167 | 3.48e-37 | 127 |
| Msa0012100 | AT3G12600.1 | 47.799 | 159 | 73 | 4 | 1 | 150 | 1 | 158 | 5.75e-34 | 118 |
| Msa0012100 | AT3G12600.2 | 47.619 | 147 | 67 | 4 | 13 | 150 | 4 | 149 | 5.28e-30 | 107 |
Find 37 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCTACGTAAAAGAATA+TGG | 0.223358 | 1_1:+18191383 | Msa0012100:CDS |
| CTTGAAGAAGCAGGAGTTAT+AGG | 0.288124 | 1_1:+18191128 | Msa0012100:CDS |
| GCAAGACATTGATGGCAATA+TGG | 0.292101 | 1_1:+18190892 | Msa0012100:CDS |
| TATATTATTGCAGCATGAAT+TGG | 0.294619 | 1_1:+18191264 | Msa0012100:intron |
| GTTTGTTTGGTATCTCGTTC+TGG | 0.365455 | 1_1:+18190456 | Msa0012100:CDS |
| ATGTCTTGCTTATATCTGTA+TGG | 0.367359 | 1_1:-18190878 | None:intergenic |
| AAGAGAGAAGATGGTTTGTT+TGG | 0.367598 | 1_1:+18190443 | None:intergenic |
| CATGTTTCCCTTACTTGTTA+AGG | 0.384957 | 1_1:+18191336 | Msa0012100:CDS |
| AAGTTGTTCCTTAACAAGTA+AGG | 0.397670 | 1_1:-18191344 | None:intergenic |
| CTTTAGATAGACTTGTTGAT+AGG | 0.406743 | 1_1:+18191878 | Msa0012100:CDS |
| ACTTCTTGTTAGTTCACAAA+AGG | 0.423809 | 1_1:+18190931 | Msa0012100:CDS |
| CTATAACTCCTGCTTCTTCA+AGG | 0.424048 | 1_1:-18191127 | None:intergenic |
| ATGCAAAGATACAATGAAAC+TGG | 0.427691 | 1_1:+18190486 | Msa0012100:CDS |
| ATATTATTGCAGCATGAATT+GGG | 0.433121 | 1_1:+18191265 | Msa0012100:intron |
| CAAGACATTGATGGCAATAT+GGG | 0.436846 | 1_1:+18190893 | Msa0012100:CDS |
| AGTTTCATTAGCAAAAGATA+TGG | 0.452059 | 1_1:+18191295 | Msa0012100:CDS |
| AGATATAAGCAAGACATTGA+TGG | 0.458567 | 1_1:+18190884 | Msa0012100:CDS |
| TGGCAATATGGGTAATGAAC+TGG | 0.465445 | 1_1:+18190904 | Msa0012100:CDS |
| ACTGGTGGTCGTCAAGTTGT+AGG | 0.480361 | 1_1:+18190504 | Msa0012100:CDS |
| CCAGAGATGTTTGTCAGCAT+TGG | 0.482593 | 1_1:+18191842 | Msa0012100:CDS |
| GAGATGTTTGTCAGCATTGG+TGG | 0.494181 | 1_1:+18191845 | Msa0012100:CDS |
| TATAACTCCTGCTTCTTCAA+GGG | 0.500603 | 1_1:-18191126 | None:intergenic |
| CCAATGCTGACAAACATCTC+TGG | 0.500836 | 1_1:-18191842 | None:intergenic |
| TGCAGCATGAATTGGGTGAA+TGG | 0.503112 | 1_1:+18191272 | Msa0012100:intron |
| CTTCTTGTTAGTTCACAAAA+GGG | 0.507421 | 1_1:+18190932 | Msa0012100:CDS |
| AAATCTACGTAAAAGAATAT+GGG | 0.510988 | 1_1:+18191384 | Msa0012100:CDS |
| AGTTGTTCCTTAACAAGTAA+GGG | 0.518395 | 1_1:-18191343 | None:intergenic |
| TTAAGGAACAACTTGAGCAC+TGG | 0.543373 | 1_1:+18191353 | Msa0012100:CDS |
| TTGTCAGCATTGGTGGATGA+AGG | 0.547295 | 1_1:+18191852 | Msa0012100:CDS |
| CTGGTGGTCGTCAAGTTGTA+GGG | 0.551311 | 1_1:+18190505 | Msa0012100:CDS |
| AGAGAATCCCTTGAAGAAGC+AGG | 0.552630 | 1_1:+18191119 | Msa0012100:CDS |
| TGTCTTGCTTATATCTGTAT+GGG | 0.559350 | 1_1:-18190877 | None:intergenic |
| AGATATGGTACATACTATGA+AGG | 0.561640 | 1_1:+18191310 | Msa0012100:CDS |
| TCAATCATTTATGTTTCCAA+AGG | 0.579468 | 1_1:+18190955 | Msa0012100:CDS |
| GTTTGGTATCTCGTTCTGGA+AGG | 0.579600 | 1_1:+18190460 | Msa0012100:CDS |
| AGGAGTTATAGGAATTGTTG+AGG | 0.587265 | 1_1:+18191139 | Msa0012100:CDS |
| CAAAGATACAATGAAACTGG+TGG | 0.665224 | 1_1:+18190489 | Msa0012100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATGAATAATAATGA+TGG | - | chr1_1:18190799-18190818 | None:intergenic | 10.0% |
| !!! | TTATTAATTTGTTTTTATTC+AGG | + | chr1_1:18191055-18191074 | Msa0012100:intron | 10.0% |
| !!! | TATTAATTTGTTTTTATTCA+GGG | + | chr1_1:18191056-18191075 | Msa0012100:intron | 10.0% |
| !!! | AAATGTAAATTTTTTATTGA+CGG | - | chr1_1:18191596-18191615 | None:intergenic | 10.0% |
| !! | TAATTAATGAATAATAATGA+TGG | - | chr1_1:18190799-18190818 | None:intergenic | 10.0% |
| !!! | TTATTAATTTGTTTTTATTC+AGG | + | chr1_1:18191055-18191074 | Msa0012100:intron | 10.0% |
| !!! | TATTAATTTGTTTTTATTCA+GGG | + | chr1_1:18191056-18191075 | Msa0012100:intron | 10.0% |
| !!! | AAATGTAAATTTTTTATTGA+CGG | - | chr1_1:18191596-18191615 | None:intergenic | 10.0% |
| !!! | GCTTAATTTTTTTTTAATCT+TGG | + | chr1_1:18190757-18190776 | Msa0012100:intron | 15.0% |
| !!! | AGCATTATTTTTATAAATTG+TGG | - | chr1_1:18191692-18191711 | None:intergenic | 15.0% |
| !!! | GCTTAATTTTTTTTTAATCT+TGG | + | chr1_1:18190757-18190776 | Msa0012100:intron | 15.0% |
| !!! | AGCATTATTTTTATAAATTG+TGG | - | chr1_1:18191692-18191711 | None:intergenic | 15.0% |
| !!! | TATATATAGTTTTATCAGTC+TGG | + | chr1_1:18190572-18190591 | Msa0012100:intron | 20.0% |
| !! | TCTAATCTAGATATATCAAA+AGG | - | chr1_1:18190698-18190717 | None:intergenic | 20.0% |
| !!! | TGTTGAGGTATTTAATTAAT+TGG | + | chr1_1:18191154-18191173 | Msa0012100:intron | 20.0% |
| !! | AAAATCTACGTAAAAGAATA+TGG | + | chr1_1:18191383-18191402 | Msa0012100:CDS | 20.0% |
| !! | AAATCTACGTAAAAGAATAT+GGG | + | chr1_1:18191384-18191403 | Msa0012100:CDS | 20.0% |
| !!! | ATTGAAATTGTTTCTGAATT+AGG | + | chr1_1:18191426-18191445 | Msa0012100:intron | 20.0% |
| !! | GTGTTTGTCATATATAAAAA+TGG | - | chr1_1:18191574-18191593 | None:intergenic | 20.0% |
| !!! | TATATATAGTTTTATCAGTC+TGG | + | chr1_1:18190572-18190591 | Msa0012100:intron | 20.0% |
| !! | TCTAATCTAGATATATCAAA+AGG | - | chr1_1:18190698-18190717 | None:intergenic | 20.0% |
| !!! | TGTTGAGGTATTTAATTAAT+TGG | + | chr1_1:18191154-18191173 | Msa0012100:intron | 20.0% |
| !! | AAAATCTACGTAAAAGAATA+TGG | + | chr1_1:18191383-18191402 | Msa0012100:CDS | 20.0% |
| !! | AAATCTACGTAAAAGAATAT+GGG | + | chr1_1:18191384-18191403 | Msa0012100:CDS | 20.0% |
| !!! | ATTGAAATTGTTTCTGAATT+AGG | + | chr1_1:18191426-18191445 | Msa0012100:intron | 20.0% |
| !! | GTGTTTGTCATATATAAAAA+TGG | - | chr1_1:18191574-18191593 | None:intergenic | 20.0% |
| ! | ATCTAGATATATCAAAAGGA+TGG | - | chr1_1:18190694-18190713 | None:intergenic | 25.0% |
| ! | ATTAATATGTCCAATTGTGT+AGG | + | chr1_1:18190849-18190868 | Msa0012100:intron | 25.0% |
| ! | TCAATCATTTATGTTTCCAA+AGG | + | chr1_1:18190955-18190974 | Msa0012100:CDS | 25.0% |
| ! | CATAAAGAGATTGCTTAATT+AGG | + | chr1_1:18190997-18191016 | Msa0012100:intron | 25.0% |
| !!! | TAATTTGTTTTTATTCAGGG+TGG | + | chr1_1:18191059-18191078 | Msa0012100:intron | 25.0% |
| ! | TATATTATTGCAGCATGAAT+TGG | + | chr1_1:18191264-18191283 | Msa0012100:intron | 25.0% |
| ! | ATATTATTGCAGCATGAATT+GGG | + | chr1_1:18191265-18191284 | Msa0012100:intron | 25.0% |
| ! | AGTTTCATTAGCAAAAGATA+TGG | + | chr1_1:18191295-18191314 | Msa0012100:CDS | 25.0% |
| ! | AAAGAAACTTAGTTATGATG+AGG | + | chr1_1:18191463-18191482 | Msa0012100:intron | 25.0% |
| !!! | GTGAAGACATGTTTTTTATA+TGG | + | chr1_1:18191717-18191736 | Msa0012100:intron | 25.0% |
| ! | ATCTAGATATATCAAAAGGA+TGG | - | chr1_1:18190694-18190713 | None:intergenic | 25.0% |
| ! | ATTAATATGTCCAATTGTGT+AGG | + | chr1_1:18190849-18190868 | Msa0012100:intron | 25.0% |
| ! | TCAATCATTTATGTTTCCAA+AGG | + | chr1_1:18190955-18190974 | Msa0012100:CDS | 25.0% |
| ! | CATAAAGAGATTGCTTAATT+AGG | + | chr1_1:18190997-18191016 | Msa0012100:intron | 25.0% |
| !!! | TAATTTGTTTTTATTCAGGG+TGG | + | chr1_1:18191059-18191078 | Msa0012100:intron | 25.0% |
| ! | TATATTATTGCAGCATGAAT+TGG | + | chr1_1:18191264-18191283 | Msa0012100:intron | 25.0% |
| ! | ATATTATTGCAGCATGAATT+GGG | + | chr1_1:18191265-18191284 | Msa0012100:intron | 25.0% |
| ! | AGTTTCATTAGCAAAAGATA+TGG | + | chr1_1:18191295-18191314 | Msa0012100:CDS | 25.0% |
| ! | AAAGAAACTTAGTTATGATG+AGG | + | chr1_1:18191463-18191482 | Msa0012100:intron | 25.0% |
| !!! | GTGAAGACATGTTTTTTATA+TGG | + | chr1_1:18191717-18191736 | Msa0012100:intron | 25.0% |
| ATGCAAAGATACAATGAAAC+TGG | + | chr1_1:18190486-18190505 | Msa0012100:CDS | 30.0% | |
| AACTGAATTTGATGTCCAAA+AGG | - | chr1_1:18190646-18190665 | None:intergenic | 30.0% | |
| TGTCTTGCTTATATCTGTAT+GGG | - | chr1_1:18190880-18190899 | None:intergenic | 30.0% | |
| ATGTCTTGCTTATATCTGTA+TGG | - | chr1_1:18190881-18190900 | None:intergenic | 30.0% | |
| AGATATAAGCAAGACATTGA+TGG | + | chr1_1:18190884-18190903 | Msa0012100:CDS | 30.0% | |
| ACTTCTTGTTAGTTCACAAA+AGG | + | chr1_1:18190931-18190950 | Msa0012100:CDS | 30.0% | |
| CTTCTTGTTAGTTCACAAAA+GGG | + | chr1_1:18190932-18190951 | Msa0012100:CDS | 30.0% | |
| TCATTTATGTTTCCAAAGGT+AGG | + | chr1_1:18190959-18190978 | Msa0012100:intron | 30.0% | |
| CATTTATGTTTCCAAAGGTA+GGG | + | chr1_1:18190960-18190979 | Msa0012100:intron | 30.0% | |
| AGATATGGTACATACTATGA+AGG | + | chr1_1:18191310-18191329 | Msa0012100:CDS | 30.0% | |
| AGTTGTTCCTTAACAAGTAA+GGG | - | chr1_1:18191346-18191365 | None:intergenic | 30.0% | |
| AAGTTGTTCCTTAACAAGTA+AGG | - | chr1_1:18191347-18191366 | None:intergenic | 30.0% | |
| ! | CTTTTACGTAGATTTTTCTC+AGG | - | chr1_1:18191379-18191398 | None:intergenic | 30.0% |
| TTAGTCAAACATGACTGATA+TGG | - | chr1_1:18191496-18191515 | None:intergenic | 30.0% | |
| !! | CTTTAGATAGACTTGTTGAT+AGG | + | chr1_1:18191878-18191897 | Msa0012100:CDS | 30.0% |
| ATGCAAAGATACAATGAAAC+TGG | + | chr1_1:18190486-18190505 | Msa0012100:CDS | 30.0% | |
| AACTGAATTTGATGTCCAAA+AGG | - | chr1_1:18190646-18190665 | None:intergenic | 30.0% | |
| TGTCTTGCTTATATCTGTAT+GGG | - | chr1_1:18190880-18190899 | None:intergenic | 30.0% | |
| ATGTCTTGCTTATATCTGTA+TGG | - | chr1_1:18190881-18190900 | None:intergenic | 30.0% | |
| AGATATAAGCAAGACATTGA+TGG | + | chr1_1:18190884-18190903 | Msa0012100:CDS | 30.0% | |
| ACTTCTTGTTAGTTCACAAA+AGG | + | chr1_1:18190931-18190950 | Msa0012100:CDS | 30.0% | |
| CTTCTTGTTAGTTCACAAAA+GGG | + | chr1_1:18190932-18190951 | Msa0012100:CDS | 30.0% | |
| TCATTTATGTTTCCAAAGGT+AGG | + | chr1_1:18190959-18190978 | Msa0012100:intron | 30.0% | |
| CATTTATGTTTCCAAAGGTA+GGG | + | chr1_1:18190960-18190979 | Msa0012100:intron | 30.0% | |
| AGATATGGTACATACTATGA+AGG | + | chr1_1:18191310-18191329 | Msa0012100:CDS | 30.0% | |
| AGTTGTTCCTTAACAAGTAA+GGG | - | chr1_1:18191346-18191365 | None:intergenic | 30.0% | |
| AAGTTGTTCCTTAACAAGTA+AGG | - | chr1_1:18191347-18191366 | None:intergenic | 30.0% | |
| ! | CTTTTACGTAGATTTTTCTC+AGG | - | chr1_1:18191379-18191398 | None:intergenic | 30.0% |
| TTAGTCAAACATGACTGATA+TGG | - | chr1_1:18191496-18191515 | None:intergenic | 30.0% | |
| !! | CTTTAGATAGACTTGTTGAT+AGG | + | chr1_1:18191878-18191897 | Msa0012100:CDS | 30.0% |
| CAAAGATACAATGAAACTGG+TGG | + | chr1_1:18190489-18190508 | Msa0012100:CDS | 35.0% | |
| TTAGTCTGATCTCGATCTAA+CGG | - | chr1_1:18190601-18190620 | None:intergenic | 35.0% | |
| ! | GAATACGCTTTCTTTCCTTT+TGG | + | chr1_1:18190628-18190647 | Msa0012100:intron | 35.0% |
| ! | CAAGACATTGATGGCAATAT+GGG | + | chr1_1:18190893-18190912 | Msa0012100:CDS | 35.0% |
| ATGAAAGAAATCCCTACCTT+TGG | - | chr1_1:18190974-18190993 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTATTCAGGGTGGA+TGG | + | chr1_1:18191063-18191082 | Msa0012100:intron | 35.0% |
| !! | TGTTTTTATTCAGGGTGGAT+GGG | + | chr1_1:18191064-18191083 | Msa0012100:intron | 35.0% |
| TATAACTCCTGCTTCTTCAA+GGG | - | chr1_1:18191129-18191148 | None:intergenic | 35.0% | |
| AGGAGTTATAGGAATTGTTG+AGG | + | chr1_1:18191139-18191158 | Msa0012100:CDS | 35.0% | |
| ! | CATGTTTCCCTTACTTGTTA+AGG | + | chr1_1:18191336-18191355 | Msa0012100:CDS | 35.0% |
| !!! | TGCAAATCACTTTTTGCAGA+TGG | + | chr1_1:18191807-18191826 | Msa0012100:intron | 35.0% |
| CAAAGATACAATGAAACTGG+TGG | + | chr1_1:18190489-18190508 | Msa0012100:CDS | 35.0% | |
| TTAGTCTGATCTCGATCTAA+CGG | - | chr1_1:18190601-18190620 | None:intergenic | 35.0% | |
| ! | GAATACGCTTTCTTTCCTTT+TGG | + | chr1_1:18190628-18190647 | Msa0012100:intron | 35.0% |
| ! | CAAGACATTGATGGCAATAT+GGG | + | chr1_1:18190893-18190912 | Msa0012100:CDS | 35.0% |
| ATGAAAGAAATCCCTACCTT+TGG | - | chr1_1:18190974-18190993 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTATTCAGGGTGGA+TGG | + | chr1_1:18191063-18191082 | Msa0012100:intron | 35.0% |
| !! | TGTTTTTATTCAGGGTGGAT+GGG | + | chr1_1:18191064-18191083 | Msa0012100:intron | 35.0% |
| TATAACTCCTGCTTCTTCAA+GGG | - | chr1_1:18191129-18191148 | None:intergenic | 35.0% | |
| AGGAGTTATAGGAATTGTTG+AGG | + | chr1_1:18191139-18191158 | Msa0012100:CDS | 35.0% | |
| ! | CATGTTTCCCTTACTTGTTA+AGG | + | chr1_1:18191336-18191355 | Msa0012100:CDS | 35.0% |
| !!! | TGCAAATCACTTTTTGCAGA+TGG | + | chr1_1:18191807-18191826 | Msa0012100:intron | 35.0% |
| GTTTGTTTGGTATCTCGTTC+TGG | + | chr1_1:18190456-18190475 | Msa0012100:CDS | 40.0% | |
| ! | GCAAGACATTGATGGCAATA+TGG | + | chr1_1:18190892-18190911 | Msa0012100:CDS | 40.0% |
| TGGCAATATGGGTAATGAAC+TGG | + | chr1_1:18190904-18190923 | Msa0012100:CDS | 40.0% | |
| CTATAACTCCTGCTTCTTCA+AGG | - | chr1_1:18191130-18191149 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAGGAGTTAT+AGG | + | chr1_1:18191128-18191147 | Msa0012100:CDS | 40.0% | |
| TTAAGGAACAACTTGAGCAC+TGG | + | chr1_1:18191353-18191372 | Msa0012100:CDS | 40.0% | |
| GTTTGTTTGGTATCTCGTTC+TGG | + | chr1_1:18190456-18190475 | Msa0012100:CDS | 40.0% | |
| ! | GCAAGACATTGATGGCAATA+TGG | + | chr1_1:18190892-18190911 | Msa0012100:CDS | 40.0% |
| TGGCAATATGGGTAATGAAC+TGG | + | chr1_1:18190904-18190923 | Msa0012100:CDS | 40.0% | |
| CTATAACTCCTGCTTCTTCA+AGG | - | chr1_1:18191130-18191149 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAGGAGTTAT+AGG | + | chr1_1:18191128-18191147 | Msa0012100:CDS | 40.0% | |
| TTAAGGAACAACTTGAGCAC+TGG | + | chr1_1:18191353-18191372 | Msa0012100:CDS | 40.0% | |
| ! | GTTTGGTATCTCGTTCTGGA+AGG | + | chr1_1:18190460-18190479 | Msa0012100:CDS | 45.0% |
| ATGGGATGCACCTACACAAT+TGG | - | chr1_1:18190862-18190881 | None:intergenic | 45.0% | |
| AGAGAATCCCTTGAAGAAGC+AGG | + | chr1_1:18191119-18191138 | Msa0012100:CDS | 45.0% | |
| TGCAGCATGAATTGGGTGAA+TGG | + | chr1_1:18191272-18191291 | Msa0012100:intron | 45.0% | |
| CCAATGCTGACAAACATCTC+TGG | - | chr1_1:18191845-18191864 | None:intergenic | 45.0% | |
| CCAGAGATGTTTGTCAGCAT+TGG | + | chr1_1:18191842-18191861 | Msa0012100:CDS | 45.0% | |
| ! | GAGATGTTTGTCAGCATTGG+TGG | + | chr1_1:18191845-18191864 | Msa0012100:CDS | 45.0% |
| !! | TTGTCAGCATTGGTGGATGA+AGG | + | chr1_1:18191852-18191871 | Msa0012100:CDS | 45.0% |
| ! | GTTTGGTATCTCGTTCTGGA+AGG | + | chr1_1:18190460-18190479 | Msa0012100:CDS | 45.0% |
| ATGGGATGCACCTACACAAT+TGG | - | chr1_1:18190862-18190881 | None:intergenic | 45.0% | |
| AGAGAATCCCTTGAAGAAGC+AGG | + | chr1_1:18191119-18191138 | Msa0012100:CDS | 45.0% | |
| TGCAGCATGAATTGGGTGAA+TGG | + | chr1_1:18191272-18191291 | Msa0012100:intron | 45.0% | |
| CCAATGCTGACAAACATCTC+TGG | - | chr1_1:18191845-18191864 | None:intergenic | 45.0% | |
| CCAGAGATGTTTGTCAGCAT+TGG | + | chr1_1:18191842-18191861 | Msa0012100:CDS | 45.0% | |
| ! | GAGATGTTTGTCAGCATTGG+TGG | + | chr1_1:18191845-18191864 | Msa0012100:CDS | 45.0% |
| !! | TTGTCAGCATTGGTGGATGA+AGG | + | chr1_1:18191852-18191871 | Msa0012100:CDS | 45.0% |
| !! | AATAAAAACAAATTAATAAA+AGG | - | chr1_1:18191054-18191073 | None:intergenic | 5.0% |
| !! | AATAAAAACAAATTAATAAA+AGG | - | chr1_1:18191054-18191073 | None:intergenic | 5.0% |
| ! | ACTGGTGGTCGTCAAGTTGT+AGG | + | chr1_1:18190504-18190523 | Msa0012100:CDS | 50.0% |
| ! | CTGGTGGTCGTCAAGTTGTA+GGG | + | chr1_1:18190505-18190524 | Msa0012100:CDS | 50.0% |
| ! | ACTGGTGGTCGTCAAGTTGT+AGG | + | chr1_1:18190504-18190523 | Msa0012100:CDS | 50.0% |
| ! | CTGGTGGTCGTCAAGTTGTA+GGG | + | chr1_1:18190505-18190524 | Msa0012100:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 18190453 | 18191930 | 18190453 | ID=Msa0012100;Name=Msa0012100 |
| chr1_1 | mRNA | 18190453 | 18191930 | 18190453 | ID=Msa0012100-mRNA-1;Parent=Msa0012100;Name=Msa0012100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|5|0|165 |
| chr1_1 | exon | 18190453 | 18190526 | 18190453 | ID=Msa0012100-mRNA-1:exon:6669;Parent=Msa0012100-mRNA-1 |
| chr1_1 | exon | 18190871 | 18190976 | 18190871 | ID=Msa0012100-mRNA-1:exon:6670;Parent=Msa0012100-mRNA-1 |
| chr1_1 | exon | 18191077 | 18191160 | 18191077 | ID=Msa0012100-mRNA-1:exon:6671;Parent=Msa0012100-mRNA-1 |
| chr1_1 | exon | 18191277 | 18191405 | 18191277 | ID=Msa0012100-mRNA-1:exon:6672;Parent=Msa0012100-mRNA-1 |
| chr1_1 | exon | 18191826 | 18191930 | 18191826 | ID=Msa0012100-mRNA-1:exon:6673;Parent=Msa0012100-mRNA-1 |
| chr1_1 | CDS | 18190453 | 18190526 | 18190453 | ID=Msa0012100-mRNA-1:cds;Parent=Msa0012100-mRNA-1 |
| chr1_1 | CDS | 18190871 | 18190976 | 18190871 | ID=Msa0012100-mRNA-1:cds;Parent=Msa0012100-mRNA-1 |
| chr1_1 | CDS | 18191077 | 18191160 | 18191077 | ID=Msa0012100-mRNA-1:cds;Parent=Msa0012100-mRNA-1 |
| chr1_1 | CDS | 18191277 | 18191405 | 18191277 | ID=Msa0012100-mRNA-1:cds;Parent=Msa0012100-mRNA-1 |
| chr1_1 | CDS | 18191826 | 18191930 | 18191826 | ID=Msa0012100-mRNA-1:cds;Parent=Msa0012100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
