AlfalfaGEDB | Msa0358120

M. sativa cultivar zhongmu-4 / Msa0358120

KEGG: K13448
GO: GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0046872 GO:0050896 GO:1901700
PFAM: PF13499.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0358120	XP_039687401.1	98.561	139	2	0	1	139	2	140	2.98e-92	273

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0358120	sp\|Q9SRE6\|CML38_ARATH	46.377	138	74	0	2	139	40	177	1.11e-35	124

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0358120	G7J5J1	98.561	139	2	0	1	139	2	140	1.43e-92	273

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017320	Msa0358120	0.801612	8.292171e-49	-8.615850e-47
Msa0061200	Msa0358120	0.808704	2.717022e-50	-8.615850e-47
Msa0071480	Msa0358120	0.834064	3.719799e-56	-8.615850e-47
Msa0081940	Msa0358120	0.806511	7.938088e-50	-8.615850e-47
Msa0105750	Msa0358120	0.806274	8.908395e-50	-8.615850e-47
Msa0119440	Msa0358120	0.862736	4.102559e-64	-8.615850e-47
Msa0126880	Msa0358120	0.825196	5.349067e-54	-8.615850e-47
Msa0128430	Msa0358120	0.806645	7.439792e-50	-8.615850e-47
Msa0154920	Msa0358120	0.801979	6.972745e-49	-8.615850e-47
Msa0162690	Msa0358120	0.810235	1.275036e-50	-8.615850e-47
Msa0171980	Msa0358120	0.815866	7.421621e-52	-8.615850e-47
Msa0183870	Msa0358120	0.806793	6.921254e-50	-8.615850e-47
Msa0192640	Msa0358120	0.831294	1.810986e-55	-8.615850e-47
Msa0202930	Msa0358120	0.810373	1.190623e-50	-8.615850e-47
Msa0213430	Msa0358120	0.806342	8.616642e-50	-8.615850e-47
Msa0259580	Msa0358120	0.800215	1.599779e-48	-8.615850e-47
Msa0305620	Msa0358120	0.835413	1.702493e-56	-8.615850e-47
Msa0312910	Msa0358120	0.830070	3.611853e-55	-8.615850e-47
Msa0347750	Msa0358120	0.803234	3.841680e-49	-8.615850e-47
Msa0358110	Msa0358120	0.892976	9.657582e-75	-8.615850e-47
Msa0358120	Msa0382370	0.815977	7.010351e-52	-8.615850e-47
Msa0358120	Msa0418400	0.891002	5.908731e-74	-8.615850e-47
Msa0358120	Msa0418410	0.901602	2.269225e-78	-8.615850e-47
Msa0358120	Msa0437070	0.846266	2.419698e-59	-8.615850e-47
Msa0358120	Msa0472710	0.896498	3.483506e-76	-8.615850e-47
Msa0358120	Msa0472720	0.996675	1.156581e-230	-8.615850e-47
Msa0358120	Msa0472760	0.874183	8.238441e-68	-8.615850e-47
Msa0358120	Msa0472770	0.905065	6.358461e-80	-8.615850e-47
Msa0358120	Msa0482940	0.820629	6.200206e-53	-8.615850e-47
Msa0358120	Msa0569780	0.815954	7.094981e-52	-8.615850e-47
Msa0358120	Msa0581970	0.816924	4.302034e-52	-8.615850e-47
Msa0358120	Msa0583670	0.804457	2.140566e-49	-8.615850e-47
Msa0358120	Msa0615680	0.825816	3.814605e-54	-8.615850e-47
Msa0358120	Msa0616450	0.804081	2.563265e-49	-8.615850e-47
Msa0358120	Msa0659790	0.828037	1.122874e-54	-8.615850e-47
Msa0358120	Msa0687230	0.807764	4.310646e-50	-8.615850e-47
Msa0358120	Msa0724370	0.836470	9.183545e-57	-8.615850e-47
Msa0358120	Msa0743530	0.800183	1.624488e-48	-8.615850e-47
Msa0358120	Msa0746170	0.804738	1.869985e-49	-8.615850e-47
Msa0358120	Msa0746210	0.803611	3.209999e-49	-8.615850e-47
Msa0358120	Msa0748660	0.889262	2.834847e-73	-8.615850e-47
Msa0358120	Msa0748920	0.807917	3.999790e-50	-8.615850e-47
Msa0358120	Msa0764920	0.843235	1.587331e-58	-8.615850e-47
Msa0358120	Msa0776750	0.807806	4.222262e-50	-8.615850e-47
Msa0358120	Msa0794050	0.803713	3.056402e-49	-8.615850e-47
Msa0358120	Msa0813260	0.844240	8.544683e-59	-8.615850e-47
Msa0358120	Msa0818770	0.824498	7.814098e-54	-8.615850e-47
Msa0358120	Msa0844610	0.836538	8.824857e-57	-8.615850e-47
Msa0358120	Msa0853810	0.803759	2.990229e-49	-8.615850e-47
Msa0358120	Msa0857300	0.801488	8.794851e-49	-8.615850e-47
Msa0358120	Msa0901110	0.811202	7.876785e-51	-8.615850e-47
Msa0358120	Msa0905990	0.814231	1.711450e-51	-8.615850e-47
Msa0358120	Msa0973070	0.837469	5.102717e-57	-8.615850e-47
Msa0358120	Msa0974950	0.801471	8.864327e-49	-8.615850e-47
Msa0358120	Msa0980020	0.820279	7.460333e-53	-8.615850e-47
Msa0358120	Msa1071660	0.812653	3.805328e-51	-8.615850e-47
Msa0358120	Msa1078330	0.834124	3.594019e-56	-8.615850e-47
Msa0358120	Msa1089270	0.809061	2.279724e-50	-8.615850e-47
Msa0358120	Msa1093100	0.800380	1.481293e-48	-8.615850e-47
Msa0358120	Msa1118710	0.807712	4.421787e-50	-8.615850e-47
Msa0358120	Msa1123720	0.835830	1.335643e-56	-8.615850e-47
Msa0358120	Msa1158770	0.821034	5.002299e-53	-8.615850e-47
Msa0358120	Msa1163880	0.809700	1.662562e-50	-8.615850e-47
Msa0358120	Msa1164020	0.803196	3.911591e-49	-8.615850e-47
Msa0358120	Msa1173900	0.800215	1.600306e-48	-8.615850e-47
Msa0358120	Msa1178370	0.805799	1.121115e-49	-8.615850e-47
Msa0358120	Msa1188560	0.808567	2.907278e-50	-8.615850e-47
Msa0358120	Msa1206650	0.808243	3.407558e-50	-8.615850e-47
Msa0358120	Msa1209190	0.803230	3.849910e-49	-8.615850e-47
Msa0358120	Msa1225100	0.804947	1.691039e-49	-8.615850e-47
Msa0358120	Msa1280170	0.812369	4.390235e-51	-8.615850e-47
Msa0358120	Msa1285200	0.805733	1.157820e-49	-8.615850e-47
Msa0358120	Msa1303580	0.800304	1.534793e-48	-8.615850e-47
Msa0358120	Msa1307180	0.804955	1.684785e-49	-8.615850e-47
Msa0358120	Msa1329800	0.814164	1.771106e-51	-8.615850e-47
Msa0358120	Msa1329870	0.804020	2.639420e-49	-8.615850e-47
Msa0358120	Msa1332050	0.810358	1.199231e-50	-8.615850e-47
Msa0358120	Msa1336040	0.820392	7.026340e-53	-8.615850e-47
Msa0358120	Msa1361250	0.867871	9.942310e-66	-8.615850e-47
Msa0358120	Msa1364160	0.809561	1.780141e-50	-8.615850e-47
Msa0358120	Msa1370590	0.820160	7.942260e-53	-8.615850e-47
Msa0358120	Msa1384100	0.819800	9.603013e-53	-8.615850e-47
Msa0358120	Msa1395730	0.810313	1.226827e-50	-8.615850e-47
Msa0358120	Msa1405220	0.814780	1.294365e-51	-8.615850e-47
Msa0358120	Msa1421890	0.838815	2.297968e-57	-8.615850e-47
Msa0358120	Msa1421900	0.911615	4.978031e-83	-8.615850e-47
Msa0358120	Msa1422810	0.827814	1.270672e-54	-8.615850e-47
Msa0358120	Msa1424350	0.835041	2.113485e-56	-8.615850e-47
Msa0358120	Msa1444120	0.824716	6.942558e-54	-8.615850e-47
Msa0358120	Msa1462470	0.834890	2.307473e-56	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0358120	MtrunA17_Chr3g0116151	98.561	139	2	0	1	139	2	140	2.74e-96	273
Msa0358120	MtrunA17_Chr3g0116141	98.561	139	2	0	1	139	1	139	3.49e-96	273
Msa0358120	MtrunA17_Chr4g0057641	74.453	137	35	0	3	139	4	140	3.14e-68	202
Msa0358120	MtrunA17_Chr4g0057651	75.940	133	32	0	6	138	7	139	3.70e-67	199
Msa0358120	MtrunA17_Chr4g0057661	74.265	136	35	0	3	138	4	139	7.71e-67	199
Msa0358120	MtrunA17_Chr6g0459231	56.934	137	59	0	2	138	5	141	4.24e-53	164
Msa0358120	MtrunA17_Chr7g0225921	52.899	138	64	1	2	138	3	140	2.52e-46	147
Msa0358120	MtrunA17_Chr8g0373691	47.407	135	70	1	5	138	53	187	3.54e-34	117
Msa0358120	MtrunA17_Chr8g0392951	39.695	131	79	0	9	139	28	158	2.61e-29	104
Msa0358120	MtrunA17_Chr3g0111371	39.695	131	76	1	9	139	9	136	3.70e-29	103
Msa0358120	MtrunA17_Chr5g0434951	39.394	132	76	2	9	138	8	137	2.63e-27	98.6
Msa0358120	MtrunA17_Chr7g0245911	40.278	144	76	4	6	139	48	191	3.40e-27	100
Msa0358120	MtrunA17_Chr1g0161211	38.806	134	81	1	6	138	47	180	4.29e-26	97.4
Msa0358120	MtrunA17_Chr1g0169581	38.346	133	79	1	9	138	8	140	4.78e-26	95.5
Msa0358120	MtrunA17_Chr8g0351681	37.762	143	80	3	6	139	50	192	2.00e-24	93.2
Msa0358120	MtrunA17_Chr8g0391691	38.462	130	79	1	6	134	37	166	2.91e-24	92.4
Msa0358120	MtrunA17_Chr4g0033601	37.143	140	79	3	6	139	6	142	1.09e-23	89.7
Msa0358120	MtrunA17_Chr1g0188171	35.971	139	78	2	6	138	13	146	2.42e-23	89.0
Msa0358120	MtrunA17_Chr7g0254731	33.813	139	81	2	6	138	13	146	2.49e-23	89.0
Msa0358120	MtrunA17_Chr6g0482731	37.405	131	81	1	9	138	30	160	4.70e-23	89.0
Msa0358120	MtrunA17_Chr4g0044961	35.385	130	83	1	9	138	61	189	1.46e-22	88.2
Msa0358120	MtrunA17_Chr6g0460211	33.094	139	82	2	6	138	13	146	5.22e-22	85.5
Msa0358120	MtrunA17_Chr5g0440931	33.094	139	82	2	6	138	13	146	5.45e-22	85.5
Msa0358120	MtrunA17_Chr5g0402331	34.586	133	86	1	7	138	50	182	7.10e-22	86.3
Msa0358120	MtrunA17_Chr1g0166281	36.220	127	80	1	13	138	20	146	9.78e-22	84.7
Msa0358120	MtrunA17_Chr3g0093271	33.333	141	83	2	4	138	62	197	2.05e-21	85.1
Msa0358120	MtrunA17_Chr1g0169621	30.380	158	82	2	9	138	8	165	5.77e-21	83.2
Msa0358120	MtrunA17_Chr5g0402361	34.586	133	86	1	7	138	222	354	9.07e-21	86.3
Msa0358120	MtrunA17_Chr5g0402361	34.328	134	84	2	7	138	50	181	7.26e-19	80.9
Msa0358120	MtrunA17_Chr8g0366401	33.582	134	77	2	9	134	21	150	2.91e-19	79.0
Msa0358120	MtrunA17_Chr7g0256171	34.815	135	85	2	8	139	8	142	3.50e-19	78.2
Msa0358120	MtrunA17_Chr1g0185001	29.630	135	95	0	4	138	11	145	1.29e-17	73.9
Msa0358120	MtrunA17_Chr4g0062221	33.083	133	86	2	9	138	15	147	6.13e-17	72.8
Msa0358120	MtrunA17_Chr7g0256701	34.307	137	84	3	8	138	76	212	2.25e-16	72.4
Msa0358120	MtrunA17_Chr5g0396261	34.234	111	70	1	30	137	2	112	1.16e-15	68.2
Msa0358120	MtrunA17_Chr8g0368681	30.827	133	89	2	9	138	16	148	1.35e-15	69.3
Msa0358120	MtrunA17_Chr7g0274101	33.582	134	88	1	6	138	13	146	1.78e-15	68.6
Msa0358120	MtrunA17_Chr4g0064231	32.895	152	79	5	9	139	68	217	3.05e-15	69.7
Msa0358120	MtrunA17_Chr7g0245371	32.857	140	81	2	13	139	32	171	3.59e-15	68.6
Msa0358120	MtrunA17_Chr7g0242561	33.333	126	84	0	14	139	370	495	6.47e-15	70.5
Msa0358120	MtrunA17_Chr2g0329371	34.058	138	86	2	7	139	66	203	6.85e-15	68.6
Msa0358120	MtrunA17_Chr5g0397101	32.117	137	88	2	5	139	371	504	7.52e-15	70.1
Msa0358120	MtrunA17_Chr8g0387671	31.387	137	89	2	5	139	371	504	1.14e-14	69.7
Msa0358120	MtrunA17_Chr3g0121191	33.083	133	78	4	7	138	95	217	1.24e-14	68.2
Msa0358120	MtrunA17_Chr6g0450921	32.812	128	85	1	13	139	37	164	1.36e-14	66.6
Msa0358120	MtrunA17_Chr7g0245231	32.031	128	86	1	13	139	38	165	6.80e-14	65.1
Msa0358120	MtrunA17_Chr5g0444171	30.657	137	90	2	5	139	397	530	1.74e-13	66.2
Msa0358120	MtrunA17_Chr5g0441691	28.676	136	92	2	5	138	373	505	2.33e-13	65.9
Msa0358120	MtrunA17_Chr0c02g0489761	28.467	137	93	2	5	139	383	516	3.32e-13	65.5
Msa0358120	MtrunA17_Chr1g0173541	30.147	136	95	0	4	139	356	491	1.20e-12	63.9
Msa0358120	MtrunA17_Chr7g0257751	30.714	140	89	2	4	139	362	497	1.48e-12	63.5
Msa0358120	MtrunA17_Chr1g0157131	27.737	137	94	2	5	139	379	512	1.64e-12	63.5
Msa0358120	MtrunA17_Chr3g0131181	29.927	137	92	2	4	139	333	466	1.69e-12	63.5
Msa0358120	MtrunA17_Chr3g0098951	28.369	141	95	2	5	139	388	528	8.05e-12	61.2
Msa0358120	MtrunA17_Chr5g0409441	28.346	127	90	1	9	134	26	152	8.35e-12	59.3
Msa0358120	MtrunA17_Chr4g0059951	27.559	127	90	2	14	139	387	512	1.95e-11	60.5
Msa0358120	MtrunA17_Chr4g0033371	31.159	138	88	3	5	139	377	510	2.04e-11	60.1
Msa0358120	MtrunA17_Chr8g0385341	29.197	137	93	2	4	139	334	467	3.04e-11	59.7
Msa0358120	MtrunA17_Chr4g0074811	28.467	137	93	2	5	139	396	529	5.09e-11	59.3
Msa0358120	MtrunA17_Chr1g0200601	27.007	137	96	2	4	139	334	467	6.90e-11	58.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0358120	AT1G76650.1	46.377	138	74	0	2	139	40	177	1.13e-36	124
Msa0358120	AT1G76650.3	46.377	138	74	0	2	139	40	177	1.13e-36	124
Msa0358120	AT1G76640.1	46.853	143	69	3	2	139	19	159	4.20e-35	119
Msa0358120	AT1G76650.2	44.928	138	66	1	2	139	40	167	1.67e-33	115
Msa0358120	AT3G50770.1	46.715	137	67	2	8	138	67	203	2.74e-33	116
Msa0358120	AT5G42380.1	44.361	133	72	1	9	139	53	185	5.45e-33	115
Msa0358120	AT5G37770.1	37.410	139	82	1	6	139	18	156	6.53e-27	98.6
Msa0358120	AT5G37770.2	37.410	139	82	1	6	139	18	156	6.53e-27	98.6
Msa0358120	AT3G01830.1	40.876	137	76	2	6	139	12	146	1.72e-26	97.1
Msa0358120	AT1G24620.1	39.552	134	80	1	6	138	38	171	2.54e-26	97.8
Msa0358120	AT1G18210.2	37.692	130	78	1	9	138	27	153	1.48e-24	92.8
Msa0358120	AT1G18210.1	37.692	130	78	1	9	138	27	153	1.48e-24	92.8
Msa0358120	AT1G66400.1	34.586	133	84	1	9	138	19	151	2.38e-24	92.0
Msa0358120	AT1G73630.1	34.351	131	83	1	9	139	24	151	8.23e-24	90.9
Msa0358120	AT1G05990.1	37.681	138	82	2	6	139	6	143	1.88e-22	87.0
Msa0358120	AT2G15680.1	36.842	133	81	2	8	139	53	183	2.26e-22	87.8
Msa0358120	AT3G56800.1	33.813	139	81	2	6	138	13	146	3.38e-22	86.3
Msa0358120	AT2G41110.1	33.813	139	81	2	6	138	13	146	3.38e-22	86.3
Msa0358120	AT2G27030.1	33.813	139	81	2	6	138	13	146	3.38e-22	86.3
Msa0358120	AT5G21274.1	33.813	139	81	2	6	138	13	146	3.42e-22	86.3
Msa0358120	AT3G22930.1	34.328	134	87	1	6	138	36	169	3.69e-22	87.0
Msa0358120	AT1G66410.1	33.094	139	82	2	6	138	13	146	4.24e-22	85.9
Msa0358120	AT5G37780.1	33.094	139	82	2	6	138	13	146	4.24e-22	85.9
Msa0358120	AT3G43810.1	33.094	139	82	2	6	138	13	146	7.20e-22	85.5
Msa0358120	AT2G27030.3	33.813	139	81	2	6	138	13	146	8.37e-22	86.3
Msa0358120	AT5G17470.1	34.328	134	85	1	9	139	6	139	1.12e-21	84.7
Msa0358120	AT3G07490.1	36.620	142	87	2	1	139	1	142	1.16e-21	85.1
Msa0358120	AT3G43810.2	33.094	139	82	2	6	138	13	146	4.28e-21	85.1
Msa0358120	AT4G14640.1	33.582	134	88	1	6	138	14	147	5.68e-21	83.2
Msa0358120	AT4G03290.1	35.374	147	85	4	1	139	1	145	8.34e-21	82.8
Msa0358120	AT2G43290.1	32.867	143	86	3	6	139	66	207	3.97e-20	82.8
Msa0358120	AT3G59440.1	33.333	135	88	1	7	139	53	187	1.34e-19	80.9
Msa0358120	AT2G41110.2	31.788	151	80	3	6	138	13	158	1.59e-19	79.7
Msa0358120	AT3G50360.1	35.156	128	82	1	13	139	35	162	4.73e-19	78.6
Msa0358120	AT3G10190.1	34.586	133	85	2	8	138	73	205	1.65e-18	78.2
Msa0358120	AT4G12860.1	34.815	135	85	2	8	139	8	142	2.71e-18	76.3
Msa0358120	AT2G41100.7	29.801	151	88	2	6	138	67	217	4.28e-18	78.6
Msa0358120	AT2G41100.6	29.801	151	88	2	6	138	67	217	4.28e-18	78.6
Msa0358120	AT2G41100.3	29.801	151	88	2	6	138	67	217	4.28e-18	78.6
Msa0358120	AT5G37780.2	29.870	154	82	3	6	138	13	161	5.57e-18	75.9
Msa0358120	AT2G41100.4	29.801	151	88	2	6	138	102	252	5.89e-18	78.6
Msa0358120	AT2G41100.4	27.333	150	92	2	6	138	13	162	1.55e-15	72.0
Msa0358120	AT2G41100.1	29.801	151	88	2	6	138	102	252	5.89e-18	78.6
Msa0358120	AT2G41100.1	27.333	150	92	2	6	138	13	162	1.55e-15	72.0
Msa0358120	AT2G36180.1	31.111	135	89	2	9	139	4	138	4.89e-17	72.8
Msa0358120	AT5G37780.4	31.746	126	75	2	19	138	13	133	5.25e-17	72.8
Msa0358120	AT1G66410.2	31.746	126	75	2	19	138	36	156	8.03e-17	72.8
Msa0358120	AT5G37780.3	31.746	126	75	2	19	138	52	172	1.03e-16	72.8
Msa0358120	AT4G14640.2	32.231	121	81	1	19	138	9	129	1.22e-16	71.6
Msa0358120	AT1G18530.1	31.579	133	88	1	9	138	11	143	2.86e-16	71.2
Msa0358120	AT1G66410.4	32.174	115	67	2	30	138	1	110	4.19e-16	69.7
Msa0358120	AT1G66410.3	32.174	115	67	2	30	138	1	110	4.19e-16	69.7
Msa0358120	AT3G43810.4	32.174	115	67	2	30	138	1	110	6.11e-16	69.3
Msa0358120	AT3G43810.3	32.174	115	67	2	30	138	1	110	6.11e-16	69.3
Msa0358120	AT3G03400.1	29.927	137	87	4	1	131	1	134	2.12e-15	68.6
Msa0358120	AT3G51850.1	34.921	126	82	0	14	139	368	493	2.88e-15	71.6
Msa0358120	AT4G37010.1	28.788	132	93	1	9	139	31	162	6.00e-15	68.2
Msa0358120	AT4G23650.1	33.577	137	86	2	5	139	383	516	6.31e-15	70.9
Msa0358120	AT4G37010.2	28.788	132	93	1	9	139	35	166	6.77e-15	67.8
Msa0358120	AT1G32250.1	30.657	137	80	2	9	134	20	152	1.03e-14	67.4
Msa0358120	AT5G12180.1	31.111	135	92	1	5	139	378	511	1.67e-14	69.3
Msa0358120	AT5G19360.1	30.370	135	93	1	5	139	373	506	3.13e-14	68.6
Msa0358120	AT1G76040.1	30.657	137	90	2	5	139	178	311	4.93e-14	67.8
Msa0358120	AT1G76040.4	30.657	137	90	2	5	139	178	311	4.93e-14	67.8
Msa0358120	AT1G76040.2	30.657	137	90	2	5	139	416	549	5.45e-14	68.2
Msa0358120	AT2G41090.1	27.820	133	94	1	6	138	13	143	6.05e-14	65.9
Msa0358120	AT3G51920.1	29.104	134	94	1	6	138	13	146	7.01e-14	64.7
Msa0358120	AT3G10660.2	31.655	139	87	4	4	139	490	623	7.36e-13	64.7
Msa0358120	AT3G10660.1	31.655	139	87	4	4	139	490	623	7.36e-13	64.7
Msa0358120	AT5G12480.2	29.197	137	96	1	4	139	269	405	8.14e-13	64.7
Msa0358120	AT5G12480.1	29.197	137	96	1	4	139	363	499	9.45e-13	64.3
Msa0358120	AT1G74740.1	32.308	130	80	3	14	139	373	498	1.28e-12	63.9
Msa0358120	AT3G03000.1	30.303	132	90	1	9	138	24	155	1.42e-12	61.6
Msa0358120	AT2G41410.1	31.111	135	89	3	8	138	73	207	1.43e-12	62.8
Msa0358120	AT3G25600.1	30.075	133	90	2	9	138	16	148	1.59e-12	61.6
Msa0358120	AT5G23580.1	29.412	136	92	2	5	139	327	459	2.33e-12	63.2
Msa0358120	AT2G41100.2	32.407	108	55	2	49	138	20	127	2.47e-12	61.6
Msa0358120	AT4G04695.1	28.889	135	95	1	5	139	336	469	3.80e-12	62.8
Msa0358120	AT2G31500.1	32.374	139	91	2	4	139	370	508	6.13e-12	62.0
Msa0358120	AT3G57530.1	30.714	140	88	4	4	139	367	501	6.99e-12	62.0
Msa0358120	AT1G50700.1	27.737	137	94	2	5	139	378	511	2.03e-11	60.8
Msa0358120	AT1G35670.1	28.676	136	93	2	5	139	331	463	2.61e-11	60.5
Msa0358120	AT4G09570.1	28.676	136	93	2	5	139	330	462	2.77e-11	60.1
Msa0358120	AT5G04870.1	30.216	139	89	4	4	139	454	587	2.81e-11	60.5
Msa0358120	AT4G04700.1	29.927	137	91	2	5	139	336	469	2.92e-11	60.1
Msa0358120	AT1G12310.1	28.346	127	88	2	13	138	21	145	3.56e-11	57.8
Msa0358120	AT3G20410.2	27.737	137	94	2	5	139	396	529	4.25e-11	59.7
Msa0358120	AT3G20410.1	27.737	137	94	2	5	139	396	529	4.25e-11	59.7
Msa0358120	AT2G41860.1	29.231	130	92	0	10	139	364	493	5.34e-11	59.3
Msa0358120	AT4G21940.2	29.197	137	92	2	5	139	406	539	5.35e-11	59.3
Msa0358120	AT2G41860.2	30.075	133	87	2	10	139	364	493	5.50e-11	59.3
Msa0358120	AT4G21940.1	29.197	137	92	2	5	139	406	539	6.05e-11	59.3
Msa0358120	AT1G62820.1	28.346	127	88	2	13	138	21	145	6.09e-11	57.0
Msa0358120	AT4G04720.2	29.197	137	92	2	5	139	384	517	7.94e-11	58.9
Msa0358120	AT4G04720.1	29.197	137	92	2	5	139	384	517	7.94e-11	58.9

Find 20 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGCATCCTCTTCAAACTCTT+TGG	0.279285	3_1:+42847360	None:intergenic
GGAGGAATTAATTGCTTTGA+TGG	0.320451	3_1:-42847466	Msa0358120:CDS
TGGTGATGGTTATTTGAGTT+TGG	0.333482	3_1:-42847487	Msa0358120:CDS
TTTGTTGAAAGAAGCTGAAA+TGG	0.376240	3_1:-42847532	Msa0358120:CDS
AGCCTCTGTCTTAGCTCTGC+TGG	0.386134	3_1:+42847576	None:intergenic
GAAGAGGATGCTTAAGAAGA+TGG	0.388089	3_1:-42847349	Msa0358120:CDS
AGACAGAGGCTAAGAGTAAT+GGG	0.414746	3_1:-42847564	Msa0358120:CDS
TTAATTGCTTTGATGGAGGA+AGG	0.458662	3_1:-42847459	Msa0358120:CDS
TGGAGAAGAACAAAAGTTGA+AGG	0.479397	3_1:-42847436	Msa0358120:CDS
AAGAGGATGCTTAAGAAGAT+GGG	0.484014	3_1:-42847348	Msa0358120:CDS
AAGACAGAGGCTAAGAGTAA+TGG	0.500258	3_1:-42847565	Msa0358120:CDS
ATTGCTTTGATGGAGGAAGG+TGG	0.541567	3_1:-42847456	Msa0358120:CDS
TGATGGTTATTTGAGTTTGG+AGG	0.566788	3_1:-42847484	Msa0358120:CDS
GGAATTAATTGCTTTGATGG+AGG	0.567051	3_1:-42847463	Msa0358120:CDS
TAACACCAAAGAGTTTGAAG+AGG	0.591633	3_1:-42847365	Msa0358120:CDS
CACCAGCAGAGCTAAGACAG+AGG	0.625620	3_1:-42847578	Msa0358120:CDS
TGAAATGGCTATTGAAGCAG+TGG	0.626317	3_1:-42847517	Msa0358120:CDS
ATTGAAGCAGTGGATTCAGA+TGG	0.638749	3_1:-42847507	Msa0358120:CDS
GCAGTGGATTCAGATGGTGA+TGG	0.712163	3_1:-42847501	Msa0358120:CDS
ATGTATGATAGTGAGAAGTG+TGG	0.719192	3_1:-42847393	Msa0358120:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATGATTAAACATTTTGATT+TGG	-	chr3_1:42847592-42847611	Msa0358120:CDS	15.0%
!!!	ATTAAACATTTTGATTTGGA+TGG	-	chr3_1:42847596-42847615	Msa0358120:CDS	20.0%
!!!	TTAAACATTTTGATTTGGAT+GGG	-	chr3_1:42847597-42847616	Msa0358120:CDS	20.0%
!!!	CTTAGATATTTTGATGAAGA+TGG	-	chr3_1:42847272-42847291	Msa0358120:CDS	25.0%
!!!	TAAACATTTTGATTTGGATG+GGG	-	chr3_1:42847598-42847617	Msa0358120:CDS	25.0%
!!!	TATTTTGATGAAGATGGTGA+TGG	-	chr3_1:42847278-42847297	Msa0358120:CDS	30.0%
	TTTGTTGAAAGAAGCTGAAA+TGG	-	chr3_1:42847355-42847374	Msa0358120:CDS	30.0%
!!	TGGTGATGGTTATTTGAGTT+TGG	-	chr3_1:42847400-42847419	Msa0358120:CDS	35.0%
!	TGATGGTTATTTGAGTTTGG+AGG	-	chr3_1:42847403-42847422	Msa0358120:CDS	35.0%
	GGAGGAATTAATTGCTTTGA+TGG	-	chr3_1:42847421-42847440	Msa0358120:CDS	35.0%
	GGAATTAATTGCTTTGATGG+AGG	-	chr3_1:42847424-42847443	Msa0358120:CDS	35.0%
	TTAATTGCTTTGATGGAGGA+AGG	-	chr3_1:42847428-42847447	Msa0358120:CDS	35.0%
	TGGAGAAGAACAAAAGTTGA+AGG	-	chr3_1:42847451-42847470	Msa0358120:CDS	35.0%
!	ATGTATGATAGTGAGAAGTG+TGG	-	chr3_1:42847494-42847513	Msa0358120:CDS	35.0%
	TAACACCAAAGAGTTTGAAG+AGG	-	chr3_1:42847522-42847541	Msa0358120:CDS	35.0%
	AAGAGGATGCTTAAGAAGAT+GGG	-	chr3_1:42847539-42847558	Msa0358120:CDS	35.0%
	AAGACAGAGGCTAAGAGTAA+TGG	-	chr3_1:42847322-42847341	Msa0358120:CDS	40.0%
	AGACAGAGGCTAAGAGTAAT+GGG	-	chr3_1:42847323-42847342	Msa0358120:CDS	40.0%
	TGAAATGGCTATTGAAGCAG+TGG	-	chr3_1:42847370-42847389	Msa0358120:CDS	40.0%
!	ATTGAAGCAGTGGATTCAGA+TGG	-	chr3_1:42847380-42847399	Msa0358120:CDS	40.0%
	AGCATCCTCTTCAAACTCTT+TGG	+	chr3_1:42847530-42847549	None:intergenic	40.0%
	GAAGAGGATGCTTAAGAAGA+TGG	-	chr3_1:42847538-42847557	Msa0358120:CDS	40.0%
!!!	CATTTTGATTTGGATGGGGA+TGG	-	chr3_1:42847602-42847621	Msa0358120:CDS	40.0%
	ATTGCTTTGATGGAGGAAGG+TGG	-	chr3_1:42847431-42847450	Msa0358120:CDS	45.0%
!	GCAGTGGATTCAGATGGTGA+TGG	-	chr3_1:42847386-42847405	Msa0358120:CDS	50.0%
	CACCAGCAGAGCTAAGACAG+AGG	-	chr3_1:42847309-42847328	Msa0358120:CDS	55.0%
!!	AGCCTCTGTCTTAGCTCTGC+TGG	+	chr3_1:42847314-42847333	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	42847245	42847664	42847245	ID=Msa0358120;Name=Msa0358120
chr3_1	mRNA	42847245	42847664	42847245	ID=Msa0358120-mRNA-1;Parent=Msa0358120;Name=Msa0358120-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|139
chr3_1	exon	42847245	42847664	42847245	ID=Msa0358120-mRNA-1:exon:7426;Parent=Msa0358120-mRNA-1
chr3_1	CDS	42847245	42847664	42847245	ID=Msa0358120-mRNA-1:cds;Parent=Msa0358120-mRNA-1

Gene Sequence

>Msa0358120

ATGAAAAACGCGGGATTCGAGCACGTTCTTAGATATTTTGATGAAGATGGTGATGGAAAAGTTTCACCAGCAGAGCTAAGACAGAGGCTAAGAGTAATGGGAGAAGAGATTTTGTTGAAAGAAGCTGAAATGGCTATTGAAGCAGTGGATTCAGATGGTGATGGTTATTTGAGTTTGGAGGAATTAATTGCTTTGATGGAGGAAGGTGGAGAAGAACAAAAGTTGAAGGATTTGAGAGAAGCATTTGAGATGTATGATAGTGAGAAGTGTGGTTTTATAACACCAAAGAGTTTGAAGAGGATGCTTAAGAAGATGGGTGAGTCTAAGTCTATTGATGAATGTAAAGCTATGATTAAACATTTTGATTTGGATGGGGATGGTTTGCTTAGCTTTGATGAATTCATAACAATGATGCAGTGA

Protein sequence

>Msa0358120

MKNAGFEHVLRYFDEDGDGKVSPAELRQRLRVMGEEILLKEAEMAIEAVDSDGDGYLSLEELIALMEEGGEEQKLKDLREAFEMYDSEKCGFITPKSLKRMLKKMGESKSIDECKAMIKHFDLDGDGLLSFDEFITMMQ*