AlfalfaGEDB | Msa0115040

M. sativa cultivar zhongmu-4 / Msa0115040

KEGG: K11699
GO: GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115040	XP_013466600.1	92.655	177	13	0	1	177	1	177	3.47e-107	342

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115040	sp\|Q9LQV2\|RDR1_ARATH	46.552	174	90	1	4	177	2	172	8.75e-50	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115040	A0A072VFQ4	92.655	177	13	0	1	177	1	177	1.66e-107	342

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0115040	0.800471	1.418910e-48	-8.615850e-47
Msa0115040	Msa0122590	0.803753	2.999674e-49	-8.615850e-47
Msa0115040	Msa0157290	0.800432	1.445190e-48	-8.615850e-47
Msa0115040	Msa0166870	0.804526	2.070790e-49	-8.615850e-47
Msa0115040	Msa0188830	0.804865	1.759791e-49	-8.615850e-47
Msa0115040	Msa0200260	0.808805	2.585170e-50	-8.615850e-47
Msa0115040	Msa0243100	0.805077	1.588867e-49	-8.615850e-47
Msa0115040	Msa0245940	0.802073	6.668986e-49	-8.615850e-47
Msa0115040	Msa0284520	0.810643	1.041094e-50	-8.615850e-47
Msa0115040	Msa0292930	0.800529	1.381220e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115040	MtrunA17_Chr1g0161471	92.655	177	13	0	1	177	1	177	3.19e-111	342
Msa0115040	MtrunA17_Chr1g0161491	74.011	177	43	2	1	177	15	188	9.08e-82	263
Msa0115040	MtrunA17_Chr1g0161521	73.446	177	47	0	1	177	1	177	2.58e-79	256
Msa0115040	MtrunA17_Chr1g0161511	72.316	177	49	0	1	177	1	177	1.56e-78	254
Msa0115040	MtrunA17_Chr1g0161451	34.682	173	110	1	5	177	3	172	1.12e-32	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115040	AT1G14790.1	46.552	174	90	1	4	177	2	172	8.90e-51	176

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Find 36 sgRNAs with CRISPR-Local

Find 569 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTCTTTACATCAGGCA+CGG	0.656840	1_3:+33558607	None:intergenic
AATATCAGCAAATTGAGACA+CGG	0.683136	1_3:+33549664	None:intergenic
AATGGTGACAAACTTCTGCT+AGG	0.606850	1_3:+33558455	None:intergenic
AGATATTGTTCCAAGGCCAA+GGG	0.622935	1_3:-33558390	Msa0115040:CDS
AGATCATGCTACAGATATGA+TGG	0.508791	1_3:-33558483	Msa0115040:CDS
AGATTGAGCTGCATCAGCCA+CGG	0.566095	1_3:-33558178	Msa0115040:CDS
AGATTTGTAGAGCAGTATAC+TGG	0.471303	1_3:-33558590	Msa0115040:CDS
AGCTTTCATATGAGAATATT+TGG	0.191630	1_3:-33558202	Msa0115040:CDS
AGTAAAACAGTTGAGCTGTA+TGG	0.440670	1_3:-33558647	Msa0115040:CDS
AGTTTGTCACCATTGCAGTA+CGG	0.554616	1_3:-33558446	Msa0115040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCTTCTCCTATCCTATTT+AGG	-	chr1_3:33549699-33549718	Msa0115040:intron	30.0%
TCTACAAATCTCTTTACATC+AGG	+	chr1_3:33549790-33549809	None:intergenic	30.0%
GTTGCTATAAAGATAAGAGA+AGG	-	chr1_3:33549835-33549854	Msa0115040:intron	30.0%
CTATTTAAAAGTTCGGGAAA+TGG	-	chr1_3:33549972-33549991	Msa0115040:intron	30.0%
ATGCATTAAATGCAACAAAC+AGG	+	chr1_3:33550351-33550370	None:intergenic	30.0%
CTCTTCTGTTTGTAGTTAAT+TGG	-	chr1_3:33550631-33550650	Msa0115040:intron	30.0%
ATGGAGTGAAATCTATTGTA+CGG	+	chr1_3:33550765-33550784	None:intergenic	30.0%
AATGGAATTTGAATTCCTTG+AGG	+	chr1_3:33550955-33550974	None:intergenic	30.0%
ATTCTTTCCATCCTTAGAAA+TGG	-	chr1_3:33551438-33551457	Msa0115040:intron	30.0%
CTTAGAAATGGCATAGTTAT+TGG	-	chr1_3:33551450-33551469	Msa0115040:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	33549622	33558789	33549622	ID=Msa0115040;Name=Msa0115040
chr1_3	mRNA	33549622	33558789	33549622	ID=Msa0115040-mRNA-1;Parent=Msa0115040;Name=Msa0115040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=111\|0\|0.5\|0.5\|1\|1\|2\|0\|200
chr1_3	exon	33549622	33549693	33549622	ID=Msa0115040-mRNA-1:exon:10512;Parent=Msa0115040-mRNA-1
chr1_3	exon	33558148	33558789	33558148	ID=Msa0115040-mRNA-1:exon:10511;Parent=Msa0115040-mRNA-1
chr1_3	five_prime_UTR	33558679	33558789	33558679	ID=Msa0115040-mRNA-1:five_prime_utr;Parent=Msa0115040-mRNA-1
chr1_3	CDS	33558148	33558678	33558148	ID=Msa0115040-mRNA-1:cds;Parent=Msa0115040-mRNA-1
chr1_3	CDS	33549622	33549693	33549622	ID=Msa0115040-mRNA-1:cds;Parent=Msa0115040-mRNA-1

Gene Sequence

>Msa0115040

ATGGTTAAAAGTAAAACAGTTGAGCTGTATGGATTCCCTCATTATGTGACCGTGCCTGATGTAAAGAGATTTGTAGAGCAGTATACTGGTGAAAGAAGTGTGGTTGCTATAAAGATAAGAGAAGGCAAAGCCCGTAATCGAACAGCATTTGCAATTATTCAATTCACTACTAAAGATCATGCTACAGATATGATGGCCTTACCTAGCAGAAGTTTGTCACCATTGCAGTACGGGAGCTCCTATTTAAAAGTTCGGGAAATGGAAAGAGATATTGTTCCAAGGCCAAGGGAATTTTTGCACAGTTTGGATGATGTGAAACTGTATTTTGGCTGTCAAATCTCAAAGAAAAGATTATCTGTTTTATGGAGAGAGGAGGATGTTAGAGTTGATTTTGGGATTGGAATGAGAAAGTGGCGATTCTCTTTGTGCCATGACAATAAGACATTCAAACTTGAGCTTTCATATGAGAATATTTGGAAGATTGAGCTGCATCAGCCACGGGGTAAAACTACAAAGTATCTATTGATTCAGCACAAAACCGTGTCTCAATTTGCTGATATTATGCGAGATGTACTTTACTTAATGCAAGATAAATTGGCTTAA

Protein sequence

>Msa0115040

MVKSKTVELYGFPHYVTVPDVKRFVEQYTGERSVVAIKIREGKARNRTAFAIIQFTTKDHATDMMALPSRSLSPLQYGSSYLKVREMERDIVPRPREFLHSLDDVKLYFGCQISKKRLSVLWREEDVRVDFGIGMRKWRFSLCHDNKTFKLELSYENIWKIELHQPRGKTTKYLLIQHKTVSQFADIMRDVLYLMQDKLA*