Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115040 | XP_013466600.1 | 92.655 | 177 | 13 | 0 | 1 | 177 | 1 | 177 | 3.47e-107 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115040 | sp|Q9LQV2|RDR1_ARATH | 46.552 | 174 | 90 | 1 | 4 | 177 | 2 | 172 | 8.75e-50 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115040 | A0A072VFQ4 | 92.655 | 177 | 13 | 0 | 1 | 177 | 1 | 177 | 1.66e-107 | 342 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0115040 | 0.800471 | 1.418910e-48 | -8.615850e-47 |
| Msa0115040 | Msa0122590 | 0.803753 | 2.999674e-49 | -8.615850e-47 |
| Msa0115040 | Msa0157290 | 0.800432 | 1.445190e-48 | -8.615850e-47 |
| Msa0115040 | Msa0166870 | 0.804526 | 2.070790e-49 | -8.615850e-47 |
| Msa0115040 | Msa0188830 | 0.804865 | 1.759791e-49 | -8.615850e-47 |
| Msa0115040 | Msa0200260 | 0.808805 | 2.585170e-50 | -8.615850e-47 |
| Msa0115040 | Msa0243100 | 0.805077 | 1.588867e-49 | -8.615850e-47 |
| Msa0115040 | Msa0245940 | 0.802073 | 6.668986e-49 | -8.615850e-47 |
| Msa0115040 | Msa0284520 | 0.810643 | 1.041094e-50 | -8.615850e-47 |
| Msa0115040 | Msa0292930 | 0.800529 | 1.381220e-48 | -8.615850e-47 |
| Msa0115040 | Msa0484780 | 0.804126 | 2.508585e-49 | -8.615850e-47 |
| Msa0115040 | Msa0657970 | 0.821500 | 3.907501e-53 | -8.615850e-47 |
| Msa0115040 | Msa0685750 | 0.810611 | 1.057737e-50 | -8.615850e-47 |
| Msa0115040 | Msa0880140 | 0.804244 | 2.370825e-49 | -8.615850e-47 |
| Msa0115040 | Msa1278840 | 0.815465 | 9.118685e-52 | -8.615850e-47 |
| Msa0115040 | Msa1314340 | 0.806967 | 6.360703e-50 | -8.615850e-47 |
| Msa0115040 | Msa1318990 | 0.816187 | 6.291506e-52 | -8.615850e-47 |
| Msa0115040 | Msa1392260 | 0.809651 | 1.703240e-50 | -8.615850e-47 |
| Msa0115040 | Msa1429900 | 0.809365 | 1.961818e-50 | -8.615850e-47 |
| Msa0115040 | Msa1438250 | 0.811944 | 5.434492e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115040 | MtrunA17_Chr1g0161471 | 92.655 | 177 | 13 | 0 | 1 | 177 | 1 | 177 | 3.19e-111 | 342 |
| Msa0115040 | MtrunA17_Chr1g0161491 | 74.011 | 177 | 43 | 2 | 1 | 177 | 15 | 188 | 9.08e-82 | 263 |
| Msa0115040 | MtrunA17_Chr1g0161521 | 73.446 | 177 | 47 | 0 | 1 | 177 | 1 | 177 | 2.58e-79 | 256 |
| Msa0115040 | MtrunA17_Chr1g0161511 | 72.316 | 177 | 49 | 0 | 1 | 177 | 1 | 177 | 1.56e-78 | 254 |
| Msa0115040 | MtrunA17_Chr1g0161451 | 34.682 | 173 | 110 | 1 | 5 | 177 | 3 | 172 | 1.12e-32 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115040 | AT1G14790.1 | 46.552 | 174 | 90 | 1 | 4 | 177 | 2 | 172 | 8.90e-51 | 176 |
Find 36 sgRNAs with CRISPR-Local
Find 569 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATGTTAGAGTTGATTT+TGG | 0.118507 | 1_3:-33558284 | Msa0115040:CDS |
| TTTCTTCTCCTATCCTATTT+AGG | 0.157937 | 1_3:-33558690 | Msa0115040:five_prime_UTR |
| TTACTTAATGCAAGATAAAT+TGG | 0.183720 | 1_3:-33549627 | Msa0115040:CDS |
| AGCTTTCATATGAGAATATT+TGG | 0.191630 | 1_3:-33558202 | Msa0115040:CDS |
| GATGATGTGAAACTGTATTT+TGG | 0.243659 | 1_3:-33558350 | Msa0115040:CDS |
| TACAAAGTATCTATTGATTC+AGG | 0.289065 | 1_3:-33558147 | Msa0115040:intron |
| TGCAAATGCTGTTCGATTAC+GGG | 0.303122 | 1_3:+33558526 | None:intergenic |
| TTGCAAATGCTGTTCGATTA+CGG | 0.331468 | 1_3:+33558525 | None:intergenic |
| CTATTTAAAAGTTCGGGAAA+TGG | 0.367680 | 1_3:-33558417 | Msa0115040:CDS |
| GGAGCTCCTATTTAAAAGTT+CGG | 0.391789 | 1_3:-33558424 | Msa0115040:CDS |
| GAGCTCCTATTTAAAAGTTC+GGG | 0.414378 | 1_3:-33558423 | Msa0115040:CDS |
| AGTAAAACAGTTGAGCTGTA+TGG | 0.440670 | 1_3:-33558647 | Msa0115040:CDS |
| GTTTGTCACCATTGCAGTAC+GGG | 0.454323 | 1_3:-33558445 | Msa0115040:CDS |
| AGATTTGTAGAGCAGTATAC+TGG | 0.471303 | 1_3:-33558590 | Msa0115040:CDS |
| TTAGATTGACATCATTTACT+TGG | 0.479691 | 1_3:-33558762 | Msa0115040:five_prime_UTR |
| GTTTGAATGTCTTATTGTCA+TGG | 0.500412 | 1_3:+33558228 | None:intergenic |
| TTGGGATTGGAATGAGAAAG+TGG | 0.506648 | 1_3:-33558265 | Msa0115040:CDS |
| TCTACAAATCTCTTTACATC+AGG | 0.508391 | 1_3:+33558602 | None:intergenic |
| AGATCATGCTACAGATATGA+TGG | 0.508791 | 1_3:-33558483 | Msa0115040:CDS |
| GATTGAGCTGCATCAGCCAC+GGG | 0.510977 | 1_3:-33558177 | Msa0115040:CDS |
| TCAGGCACGGTCACATAATG+AGG | 0.513553 | 1_3:+33558620 | None:intergenic |
| GAGATATTGTTCCAAGGCCA+AGG | 0.519330 | 1_3:-33558391 | Msa0115040:CDS |
| TATTTAGGAAAATCAAAAGA+TGG | 0.522810 | 1_3:-33558675 | Msa0115040:exon |
| AGTTTGTCACCATTGCAGTA+CGG | 0.554616 | 1_3:-33558446 | Msa0115040:CDS |
| AGATTGAGCTGCATCAGCCA+CGG | 0.566095 | 1_3:-33558178 | Msa0115040:CDS |
| TGACAAACTTCTGCTAGGTA+AGG | 0.579392 | 1_3:+33558460 | None:intergenic |
| TAGGAGCTCCCGTACTGCAA+TGG | 0.599827 | 1_3:+33558437 | None:intergenic |
| GTTGCTATAAAGATAAGAGA+AGG | 0.600335 | 1_3:-33558554 | Msa0115040:CDS |
| AATGGTGACAAACTTCTGCT+AGG | 0.606850 | 1_3:+33558455 | None:intergenic |
| AGATATTGTTCCAAGGCCAA+GGG | 0.622935 | 1_3:-33558390 | Msa0115040:CDS |
| TGGAAAGAGATATTGTTCCA+AGG | 0.625967 | 1_3:-33558397 | Msa0115040:CDS |
| AAATCTCTTTACATCAGGCA+CGG | 0.656840 | 1_3:+33558607 | None:intergenic |
| CAGGCACGGTCACATAATGA+GGG | 0.657015 | 1_3:+33558621 | None:intergenic |
| AATATCAGCAAATTGAGACA+CGG | 0.683136 | 1_3:+33549664 | None:intergenic |
| ATTGAGCTGCATCAGCCACG+GGG | 0.745981 | 1_3:-33558176 | Msa0115040:CDS |
| GTATACTGGTGAAAGAAGTG+TGG | 0.750231 | 1_3:-33558576 | Msa0115040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACAAAATTTGAAATAAAA+AGG | + | chr1_3:33550318-33550337 | None:intergenic | 10.0% |
| !! | TCTAATATAAGTTAATAAAA+TGG | - | chr1_3:33553429-33553448 | Msa0115040:intron | 10.0% |
| !! | GAAATAAAATGAATATATTA+CGG | - | chr1_3:33554574-33554593 | Msa0115040:intron | 10.0% |
| !! | AATAATTAAATAATTAAGAC+GGG | + | chr1_3:33555371-33555390 | None:intergenic | 10.0% |
| !! | GAAATAAAATAAATATTTAG+AGG | - | chr1_3:33555575-33555594 | Msa0115040:intron | 10.0% |
| !!! | TTATTTTTAATGAAAAATGA+GGG | + | chr1_3:33557920-33557939 | None:intergenic | 10.0% |
| !!! | TTTATTTTTAATGAAAAATG+AGG | + | chr1_3:33557921-33557940 | None:intergenic | 10.0% |
| !!! | AACTTAATTTTGATAATATT+TGG | - | chr1_3:33558050-33558069 | Msa0115040:intron | 10.0% |
| !! | TCAATAAAATAGTTCTTAAA+AGG | + | chr1_3:33550721-33550740 | None:intergenic | 15.0% |
| !! | AAAAAAAGTAAATTTAAGGA+TGG | + | chr1_3:33552727-33552746 | None:intergenic | 15.0% |
| !! | TGCAAAAAAAAGTAAATTTA+AGG | + | chr1_3:33552731-33552750 | None:intergenic | 15.0% |
| !!! | AATATTTTGCAGTTATTTAT+AGG | - | chr1_3:33552798-33552817 | Msa0115040:intron | 15.0% |
| !!! | TATCATTTAGAATGTTATTT+TGG | - | chr1_3:33552823-33552842 | Msa0115040:intron | 15.0% |
| !!! | TTTATCTTGTATTTTATGTA+TGG | - | chr1_3:33553121-33553140 | Msa0115040:intron | 15.0% |
| !!! | TTTTATTATAAGTTGAAAAG+GGG | + | chr1_3:33553240-33553259 | None:intergenic | 15.0% |
| !!! | CTTTTATTATAAGTTGAAAA+GGG | + | chr1_3:33553241-33553260 | None:intergenic | 15.0% |
| !!! | TCTTTTATTATAAGTTGAAA+AGG | + | chr1_3:33553242-33553261 | None:intergenic | 15.0% |
| !! | ATAAGATTATAAGATTTATG+AGG | - | chr1_3:33555491-33555510 | Msa0115040:intron | 15.0% |
| !! | ATAAAATAAATATTTAGAGG+AGG | - | chr1_3:33555578-33555597 | Msa0115040:intron | 15.0% |
| !! | TAAAATAAATATTTAGAGGA+GGG | - | chr1_3:33555579-33555598 | Msa0115040:intron | 15.0% |
| !! | ATAAAATTAGAAAGTTTAGT+GGG | - | chr1_3:33555610-33555629 | Msa0115040:intron | 15.0% |
| !!! | TTACTATGAAATTTTTATGT+TGG | - | chr1_3:33557367-33557386 | Msa0115040:intron | 15.0% |
| !!! | TACTATGAAATTTTTATGTT+GGG | - | chr1_3:33557368-33557387 | Msa0115040:intron | 15.0% |
| !! | AAAATATAAATTATACGACA+GGG | + | chr1_3:33557449-33557468 | None:intergenic | 15.0% |
| !! | AAAAATATAAATTATACGAC+AGG | + | chr1_3:33557450-33557469 | None:intergenic | 15.0% |
| !!! | AAGATAATCATTTTCAAAAA+GGG | + | chr1_3:33558082-33558101 | None:intergenic | 15.0% |
| !!! | AAAGATAATCATTTTCAAAA+AGG | + | chr1_3:33558083-33558102 | None:intergenic | 15.0% |
| !!! | TTTGTTATGAAAATATGATT+CGG | - | chr1_3:33558594-33558613 | Msa0115040:CDS | 15.0% |
| !!! | ATCTTTTGATTTTCCTAAAT+AGG | + | chr1_3:33549715-33549734 | None:intergenic | 20.0% |
| !! | TATTTAGGAAAATCAAAAGA+TGG | - | chr1_3:33549714-33549733 | Msa0115040:intron | 20.0% |
| !!! | AGAAAAGATTATCTGTTTTA+TGG | - | chr1_3:33550076-33550095 | Msa0115040:intron | 20.0% |
| !!! | CTTGTTTAAAGTTAATTCAT+TGG | - | chr1_3:33550981-33551000 | Msa0115040:intron | 20.0% |
| !! | GCGTAAATACAAAAAATATA+TGG | - | chr1_3:33551308-33551327 | Msa0115040:intron | 20.0% |
| !!! | ATTTAGCTACATTTTTTATG+CGG | + | chr1_3:33551602-33551621 | None:intergenic | 20.0% |
| !! | TTGTTCAATATTCTAACAAT+AGG | - | chr1_3:33552312-33552331 | Msa0115040:intron | 20.0% |
| !! | TGTTCAATATTCTAACAATA+GGG | - | chr1_3:33552313-33552332 | Msa0115040:intron | 20.0% |
| !! | ATCAAAATAGGAATCTTAAA+AGG | + | chr1_3:33552601-33552620 | None:intergenic | 20.0% |
| !! | AGAAAAAAACTTAACTATAG+AGG | + | chr1_3:33552874-33552893 | None:intergenic | 20.0% |
| !! | AAGTTAATAAAATGGTTTCA+TGG | - | chr1_3:33553437-33553456 | Msa0115040:intron | 20.0% |
| !! | TACAAATCAAAGAATGTAAT+AGG | - | chr1_3:33553705-33553724 | Msa0115040:intron | 20.0% |
| !!! | ATGTAATAGGAAAACTTTTT+AGG | - | chr1_3:33553718-33553737 | Msa0115040:intron | 20.0% |
| !!! | TGTAATAGGAAAACTTTTTA+GGG | - | chr1_3:33553719-33553738 | Msa0115040:intron | 20.0% |
| !!! | AGCATTTTGAACTTATATTA+TGG | - | chr1_3:33554541-33554560 | Msa0115040:intron | 20.0% |
| !!! | GCATTTTGAACTTATATTAT+GGG | - | chr1_3:33554542-33554561 | Msa0115040:intron | 20.0% |
| !! | AAATATTTACAGAAGAAACA+CGG | - | chr1_3:33554601-33554620 | Msa0115040:intron | 20.0% |
| !! | TCTTTAGTATTTAAATCTAG+TGG | - | chr1_3:33554663-33554682 | Msa0115040:intron | 20.0% |
| !!! | TACAACTCTAAAAAGAAAAA+TGG | + | chr1_3:33554721-33554740 | None:intergenic | 20.0% |
| !!! | TTTCTTTTTAGAGTTGTATT+TGG | - | chr1_3:33554723-33554742 | Msa0115040:intron | 20.0% |
| !! | AAAATAAATATTTAGAGGAG+GGG | - | chr1_3:33555580-33555599 | Msa0115040:intron | 20.0% |
| !! | CATAAAATTAGAAAGTTTAG+TGG | - | chr1_3:33555609-33555628 | Msa0115040:intron | 20.0% |
| !!! | ATCAATCTAACAATTTTTCA+TGG | + | chr1_3:33555912-33555931 | None:intergenic | 20.0% |
| !! | CTCTTATAATTCCATTATTA+TGG | + | chr1_3:33556567-33556586 | None:intergenic | 20.0% |
| !! | CATAAAACATCATAAACAAA+CGG | + | chr1_3:33556937-33556956 | None:intergenic | 20.0% |
| !! | AAGTTCATAAATAATACGTA+AGG | + | chr1_3:33557155-33557174 | None:intergenic | 20.0% |
| !! | CATAGTAATTCAACTTTAAA+CGG | + | chr1_3:33557355-33557374 | None:intergenic | 20.0% |
| !!! | AAATTTTTATGTTGGGAAAA+CGG | - | chr1_3:33557375-33557394 | Msa0115040:intron | 20.0% |
| !! | AAATATAAATTATACGACAG+GGG | + | chr1_3:33557448-33557467 | None:intergenic | 20.0% |
| !! | ATAACAACTTAATGAGAAAA+TGG | + | chr1_3:33557515-33557534 | None:intergenic | 20.0% |
| !! | AATTCAAGCATAAAAAAGTT+TGG | + | chr1_3:33557775-33557794 | None:intergenic | 20.0% |
| !!! | AACTTTTTTATGCTTGAATT+AGG | - | chr1_3:33557775-33557794 | Msa0115040:intron | 20.0% |
| !!! | TTTTTAATAAGCCATCAATT+TGG | - | chr1_3:33557802-33557821 | Msa0115040:intron | 20.0% |
| !! | AAAAGAGACAATCATATTTA+TGG | - | chr1_3:33557938-33557957 | Msa0115040:intron | 20.0% |
| !!! | AGTGTTAGTTTATATATTGT+TGG | - | chr1_3:33558005-33558024 | Msa0115040:intron | 20.0% |
| !!! | GGTTTATTCTTAGTTTTTAA+AGG | - | chr1_3:33558026-33558045 | Msa0115040:intron | 20.0% |
| !! | GAAAGAATCTTATATTATGA+TGG | - | chr1_3:33558560-33558579 | Msa0115040:CDS | 20.0% |
| !! | TTGTTATGAAAATATGATTC+GGG | - | chr1_3:33558595-33558614 | Msa0115040:CDS | 20.0% |
| !! | TTACTTAATGCAAGATAAAT+TGG | - | chr1_3:33558762-33558781 | Msa0115040:five_prime_UTR | 20.0% |
| ! | TTAGATTGACATCATTTACT+TGG | - | chr1_3:33549627-33549646 | Msa0115040:CDS | 25.0% |
| !! | TTGATTTTCCTAAATAGGAT+AGG | + | chr1_3:33549710-33549729 | None:intergenic | 25.0% |
| ! | AGCTTTCATATGAGAATATT+TGG | - | chr1_3:33550187-33550206 | Msa0115040:intron | 25.0% |
| !!! | TACAAAGTATCTATTGATTC+AGG | - | chr1_3:33550242-33550261 | Msa0115040:intron | 25.0% |
| ! | AAAAAGGAAAATGAAGAACA+TGG | + | chr1_3:33550302-33550321 | None:intergenic | 25.0% |
| !! | ATTGGTTTATGGTACATTTA+TGG | - | chr1_3:33550439-33550458 | Msa0115040:intron | 25.0% |
| ! | ATATAATACAACACAACACA+TGG | + | chr1_3:33550477-33550496 | None:intergenic | 25.0% |
| ! | GTTGTATTATATAGCTAGAT+TGG | - | chr1_3:33550485-33550504 | Msa0115040:intron | 25.0% |
| ! | ACTTTAAACAAGATGTCAAA+TGG | + | chr1_3:33550973-33550992 | None:intergenic | 25.0% |
| ! | AGAAAAGATGTACTATTCAA+AGG | - | chr1_3:33551101-33551120 | Msa0115040:intron | 25.0% |
| ! | ACTAGGATATTTATTCCAAA+AGG | - | chr1_3:33552233-33552252 | Msa0115040:intron | 25.0% |
| ! | AAAAACTTCACCATATTCTA+GGG | + | chr1_3:33552294-33552313 | None:intergenic | 25.0% |
| !! | ATCATCTTCACTTCTTTTAA+CGG | - | chr1_3:33552619-33552638 | Msa0115040:intron | 25.0% |
| ! | ACTAAAAGATTTATACCAAG+TGG | + | chr1_3:33553275-33553294 | None:intergenic | 25.0% |
| !! | TCAGTTAAGTATGAATCTTT+TGG | + | chr1_3:33553384-33553403 | None:intergenic | 25.0% |
| !!! | ACATTCTTTGATTTGTAGAT+AGG | + | chr1_3:33553702-33553721 | None:intergenic | 25.0% |
| !!! | AAACTTTTTAGGGAAATTCA+AGG | - | chr1_3:33553729-33553748 | Msa0115040:intron | 25.0% |
| !! | AATTCAAGGTATTTCAACTA+AGG | - | chr1_3:33553743-33553762 | Msa0115040:intron | 25.0% |
| !! | TTTTCATAATATTCCCACTT+AGG | + | chr1_3:33553941-33553960 | None:intergenic | 25.0% |
| ! | AAAATCTTTCACCAAAAGAA+GGG | - | chr1_3:33553965-33553984 | Msa0115040:intron | 25.0% |
| !!! | ATCTACTTATTTGCTTTTTG+TGG | - | chr1_3:33554478-33554497 | Msa0115040:intron | 25.0% |
| !!! | TCTACTTATTTGCTTTTTGT+GGG | - | chr1_3:33554479-33554498 | Msa0115040:intron | 25.0% |
| !!! | TGTATTTGGAGAAAGTATTA+TGG | - | chr1_3:33554737-33554756 | Msa0115040:intron | 25.0% |
| !! | AATCGAATTTTGCATATAAC+AGG | + | chr1_3:33554903-33554922 | None:intergenic | 25.0% |
| !!! | AATTAGTAATCTTCGAGTTT+TGG | + | chr1_3:33554993-33555012 | None:intergenic | 25.0% |
| !! | GCGATTTAAAATGATTTATG+AGG | - | chr1_3:33555427-33555446 | Msa0115040:intron | 25.0% |
| ! | AGAAGAGATATAAATAGAAG+AGG | - | chr1_3:33555655-33555674 | Msa0115040:intron | 25.0% |
| ! | AGATATAAATAGAAGAGGTT+AGG | - | chr1_3:33555660-33555679 | Msa0115040:intron | 25.0% |
| ! | TACCTTATAACAGATGAAAT+TGG | + | chr1_3:33555768-33555787 | None:intergenic | 25.0% |
| ! | ATTTCATCTGTTATAAGGTA+AGG | - | chr1_3:33555768-33555787 | Msa0115040:intron | 25.0% |
| ! | TTTCATCTGTTATAAGGTAA+GGG | - | chr1_3:33555769-33555788 | Msa0115040:intron | 25.0% |
| !! | AAGTCTCTAATTCTGAAAAA+TGG | - | chr1_3:33555815-33555834 | Msa0115040:intron | 25.0% |
| !! | AAATGGATTTAGCATGATTT+AGG | - | chr1_3:33555832-33555851 | Msa0115040:intron | 25.0% |
| !!! | TTTTGAGAGAATTGAGAATT+AGG | - | chr1_3:33555860-33555879 | Msa0115040:intron | 25.0% |
| ! | TTTGAGAGAATTGAGAATTA+GGG | - | chr1_3:33555861-33555880 | Msa0115040:intron | 25.0% |
| ! | TAAGAAGTTGTCCATAATAA+TGG | - | chr1_3:33556553-33556572 | Msa0115040:intron | 25.0% |
| ! | TATTTACGCTCATATATGTT+GGG | - | chr1_3:33556711-33556730 | Msa0115040:intron | 25.0% |
| ! | TTGTAGGTAATAAAGATTAG+AGG | - | chr1_3:33557051-33557070 | Msa0115040:intron | 25.0% |
| !! | AATTTTTATGTTGGGAAAAC+GGG | - | chr1_3:33557376-33557395 | Msa0115040:intron | 25.0% |
| !!! | GTTGTTATTTGTCTTTTAGA+CGG | - | chr1_3:33557527-33557546 | Msa0115040:intron | 25.0% |
| ! | ATTCTCATGTCTTAATACAA+AGG | + | chr1_3:33557557-33557576 | None:intergenic | 25.0% |
| !!! | TATTTTAGAGACCAAATTGA+TGG | + | chr1_3:33557816-33557835 | None:intergenic | 25.0% |
| ! | GATTTCAGAAAAACAATCTA+AGG | - | chr1_3:33558244-33558263 | Msa0115040:CDS | 25.0% |
| !! | AGAAAAACAATCTAAGGTAA+GGG | - | chr1_3:33558250-33558269 | Msa0115040:CDS | 25.0% |
| ! | GACTATCTTTCACTAATATT+AGG | - | chr1_3:33558276-33558295 | Msa0115040:CDS | 25.0% |
| !!! | TAATTTGTTGCTGTGATTTT+GGG | - | chr1_3:33558445-33558464 | Msa0115040:CDS | 25.0% |
| !!! | TTTTGATTCTTGAATGTCTA+AGG | - | chr1_3:33558535-33558554 | Msa0115040:CDS | 25.0% |
| ! | TTTGATTCTTGAATGTCTAA+GGG | - | chr1_3:33558536-33558555 | Msa0115040:CDS | 25.0% |
| ! | TGTTATGAAAATATGATTCG+GGG | - | chr1_3:33558596-33558615 | Msa0115040:CDS | 25.0% |
| TTTCTTCTCCTATCCTATTT+AGG | - | chr1_3:33549699-33549718 | Msa0115040:intron | 30.0% | |
| TCTACAAATCTCTTTACATC+AGG | + | chr1_3:33549790-33549809 | None:intergenic | 30.0% | |
| GTTGCTATAAAGATAAGAGA+AGG | - | chr1_3:33549835-33549854 | Msa0115040:intron | 30.0% | |
| ! | CATTTCCCGAACTTTTAAAT+AGG | + | chr1_3:33549974-33549993 | None:intergenic | 30.0% |
| CTATTTAAAAGTTCGGGAAA+TGG | - | chr1_3:33549972-33549991 | Msa0115040:intron | 30.0% | |
| ! | GATGATGTGAAACTGTATTT+TGG | - | chr1_3:33550039-33550058 | Msa0115040:intron | 30.0% |
| ! | ATTATCTGTTTTATGGAGAG+AGG | - | chr1_3:33550083-33550102 | Msa0115040:intron | 30.0% |
| !! | AGGATGTTAGAGTTGATTTT+GGG | - | chr1_3:33550106-33550125 | Msa0115040:intron | 30.0% |
| ! | GTTTGAATGTCTTATTGTCA+TGG | + | chr1_3:33550164-33550183 | None:intergenic | 30.0% |
| ATGCATTAAATGCAACAAAC+AGG | + | chr1_3:33550351-33550370 | None:intergenic | 30.0% | |
| !! | ATCTCAAGAACATTGGTTTA+TGG | - | chr1_3:33550428-33550447 | Msa0115040:intron | 30.0% |
| CTCTTCTGTTTGTAGTTAAT+TGG | - | chr1_3:33550631-33550650 | Msa0115040:intron | 30.0% | |
| ! | TTATATGCATCATCTGAAGT+AGG | + | chr1_3:33550685-33550704 | None:intergenic | 30.0% |
| ATGGAGTGAAATCTATTGTA+CGG | + | chr1_3:33550765-33550784 | None:intergenic | 30.0% | |
| AATGGAATTTGAATTCCTTG+AGG | + | chr1_3:33550955-33550974 | None:intergenic | 30.0% | |
| ! | TATATCTTTGGATAACGGTT+TGG | - | chr1_3:33551206-33551225 | Msa0115040:intron | 30.0% |
| ATTCTTTCCATCCTTAGAAA+TGG | - | chr1_3:33551438-33551457 | Msa0115040:intron | 30.0% | |
| ! | CAATAACTATGCCATTTCTA+AGG | + | chr1_3:33551452-33551471 | None:intergenic | 30.0% |
| CTTAGAAATGGCATAGTTAT+TGG | - | chr1_3:33551450-33551469 | Msa0115040:intron | 30.0% | |
| ! | TTTTGGCATGTAGTAAGTTT+CGG | - | chr1_3:33551931-33551950 | Msa0115040:intron | 30.0% |
| AATACTAACAGATTCGACAA+AGG | - | chr1_3:33552058-33552077 | Msa0115040:intron | 30.0% | |
| GAAAGAAATGGTTCAACATT+AGG | + | chr1_3:33552161-33552180 | None:intergenic | 30.0% | |
| CAAAAACTTCACCATATTCT+AGG | + | chr1_3:33552295-33552314 | None:intergenic | 30.0% | |
| AGTCTTTCTCATGTAGTTAA+TGG | - | chr1_3:33552341-33552360 | Msa0115040:intron | 30.0% | |
| TTCTCATGTAGTTAATGGTA+AGG | - | chr1_3:33552346-33552365 | Msa0115040:intron | 30.0% | |
| GAAGTGAAGATGATCAAAAT+AGG | + | chr1_3:33552613-33552632 | None:intergenic | 30.0% | |
| ! | TGGATGAGTTTTTCTTCAAT+GGG | + | chr1_3:33552763-33552782 | None:intergenic | 30.0% |
| !! | ATATTTTAAGCCTACTTCTC+TGG | + | chr1_3:33552783-33552802 | None:intergenic | 30.0% |
| !!! | TAGAATGTTATTTTGGCAAG+TGG | - | chr1_3:33552830-33552849 | Msa0115040:intron | 30.0% |
| ATATTAGAATGCATGTTGCA+GGG | + | chr1_3:33553417-33553436 | None:intergenic | 30.0% | |
| TATATTAGAATGCATGTTGC+AGG | + | chr1_3:33553418-33553437 | None:intergenic | 30.0% | |
| ACAATCGTTGAGTATGTAAT+TGG | + | chr1_3:33553487-33553506 | None:intergenic | 30.0% | |
| ATGAAATCTGGATATTCTGT+GGG | + | chr1_3:33553663-33553682 | None:intergenic | 30.0% | |
| ! | TTATGCTTTTCCATGAAATC+TGG | + | chr1_3:33553675-33553694 | None:intergenic | 30.0% |
| AACCAATTATGACTACAAGT+TGG | - | chr1_3:33553872-33553891 | Msa0115040:intron | 30.0% | |
| ACCAATTATGACTACAAGTT+GGG | - | chr1_3:33553873-33553892 | Msa0115040:intron | 30.0% | |
| CAAAATCTTTCACCAAAAGA+AGG | - | chr1_3:33553964-33553983 | Msa0115040:intron | 30.0% | |
| ACTTACCATCATAGTTACTA+TGG | - | chr1_3:33554119-33554138 | Msa0115040:intron | 30.0% | |
| ACAAACCATAGTAACTATGA+TGG | + | chr1_3:33554127-33554146 | None:intergenic | 30.0% | |
| ! | TACTATGGTTTGTACAATGA+TGG | - | chr1_3:33554134-33554153 | Msa0115040:intron | 30.0% |
| ATTATTATGAAGACCTGTAG+CGG | - | chr1_3:33554434-33554453 | Msa0115040:intron | 30.0% | |
| CTTATATTATGGGTACAATG+TGG | - | chr1_3:33554552-33554571 | Msa0115040:intron | 30.0% | |
| !!! | GATTAACCAATTTTTGAGTG+AGG | - | chr1_3:33554919-33554938 | Msa0115040:intron | 30.0% |
| TTTCAATCTTCGAGTAAAGT+GGG | + | chr1_3:33554949-33554968 | None:intergenic | 30.0% | |
| TCGAAGATTGAAAGAAACAA+CGG | - | chr1_3:33554956-33554975 | Msa0115040:intron | 30.0% | |
| TGAAATATTTCGACTAACTC+TGG | + | chr1_3:33555056-33555075 | None:intergenic | 30.0% | |
| ACTTCTTGATACACTTATGT+TGG | + | chr1_3:33555102-33555121 | None:intergenic | 30.0% | |
| TCAAGTATTCAACTCTCAAA+AGG | - | chr1_3:33555154-33555173 | Msa0115040:intron | 30.0% | |
| AAACTAACTTCTATGATCCA+TGG | + | chr1_3:33555225-33555244 | None:intergenic | 30.0% | |
| CATAGAATAACACATCTTAC+AGG | - | chr1_3:33555338-33555357 | Msa0115040:intron | 30.0% | |
| TGCCAATTTCATCTGTTATA+AGG | - | chr1_3:33555763-33555782 | Msa0115040:intron | 30.0% | |
| CATGGTTCAATCATCAAAAT+CGG | + | chr1_3:33555894-33555913 | None:intergenic | 30.0% | |
| ! | CAATTTTTCACCTAATCTCA+TGG | + | chr1_3:33556002-33556021 | None:intergenic | 30.0% |
| TGATCTTAGAAGTAAGAATG+AGG | - | chr1_3:33556299-33556318 | Msa0115040:intron | 30.0% | |
| GATCTTAGAAGTAAGAATGA+GGG | - | chr1_3:33556300-33556319 | Msa0115040:intron | 30.0% | |
| ATAATCTCAGTCATCTAAAC+AGG | + | chr1_3:33556356-33556375 | None:intergenic | 30.0% | |
| TGCAACTTCAAGACATTAAA+TGG | + | chr1_3:33556508-33556527 | None:intergenic | 30.0% | |
| TCTGCATACTCATTAAAGAT+GGG | - | chr1_3:33556631-33556650 | Msa0115040:intron | 30.0% | |
| CAACATATATGAGCGTAAAT+AGG | + | chr1_3:33556712-33556731 | None:intergenic | 30.0% | |
| CTATTTACGCTCATATATGT+TGG | - | chr1_3:33556710-33556729 | Msa0115040:intron | 30.0% | |
| ATTTACGCTCATATATGTTG+GGG | - | chr1_3:33556712-33556731 | Msa0115040:intron | 30.0% | |
| AAGGAATAGAAGTAAAAGCA+AGG | + | chr1_3:33557136-33557155 | None:intergenic | 30.0% | |
| TCAATCAACATAGAAGTCTT+TGG | + | chr1_3:33557232-33557251 | None:intergenic | 30.0% | |
| AGTATTTCAAAACTTTGCAG+CGG | + | chr1_3:33557262-33557281 | None:intergenic | 30.0% | |
| ! | ATTTTTATGTTGGGAAAACG+GGG | - | chr1_3:33557377-33557396 | Msa0115040:intron | 30.0% |
| TAATCGAGTTATAATTGCGT+CGG | + | chr1_3:33557707-33557726 | None:intergenic | 30.0% | |
| ACGCAATTATAACTCGATTA+GGG | - | chr1_3:33557707-33557726 | Msa0115040:intron | 30.0% | |
| ! | TGTGATAAATGACTTGGAAT+TGG | + | chr1_3:33557744-33557763 | None:intergenic | 30.0% |
| ACAACTTGTGATAAATGACT+TGG | + | chr1_3:33557750-33557769 | None:intergenic | 30.0% | |
| !! | GATGGGTTAGTAAAAGTTTA+CGG | + | chr1_3:33557889-33557908 | None:intergenic | 30.0% |
| ! | CAGAAAAACAATCTAAGGTA+AGG | - | chr1_3:33558249-33558268 | Msa0115040:CDS | 30.0% |
| TATGAACATATGAGTAGTGA+AGG | - | chr1_3:33558363-33558382 | Msa0115040:CDS | 30.0% | |
| ATGAACATATGAGTAGTGAA+GGG | - | chr1_3:33558364-33558383 | Msa0115040:CDS | 30.0% | |
| !!! | CTAATTTGTTGCTGTGATTT+TGG | - | chr1_3:33558444-33558463 | Msa0115040:CDS | 30.0% |
| !! | TTTGTTCTTTTGAGTGTATG+CGG | - | chr1_3:33558650-33558669 | Msa0115040:CDS | 30.0% |
| AATATCAGCAAATTGAGACA+CGG | + | chr1_3:33558728-33558747 | None:intergenic | 30.0% | |
| AGTAAAACAGTTGAGCTGTA+TGG | - | chr1_3:33549742-33549761 | Msa0115040:intron | 35.0% | |
| AAATCTCTTTACATCAGGCA+CGG | + | chr1_3:33549785-33549804 | None:intergenic | 35.0% | |
| AGATTTGTAGAGCAGTATAC+TGG | - | chr1_3:33549799-33549818 | Msa0115040:intron | 35.0% | |
| TTGCAAATGCTGTTCGATTA+CGG | + | chr1_3:33549867-33549886 | None:intergenic | 35.0% | |
| AGATCATGCTACAGATATGA+TGG | - | chr1_3:33549906-33549925 | Msa0115040:intron | 35.0% | |
| GGAGCTCCTATTTAAAAGTT+CGG | - | chr1_3:33549965-33549984 | Msa0115040:intron | 35.0% | |
| GAGCTCCTATTTAAAAGTTC+GGG | - | chr1_3:33549966-33549985 | Msa0115040:intron | 35.0% | |
| TGGAAAGAGATATTGTTCCA+AGG | - | chr1_3:33549992-33550011 | Msa0115040:intron | 35.0% | |
| AAACTGTGCAAAAATTCCCT+TGG | + | chr1_3:33550018-33550037 | None:intergenic | 35.0% | |
| ! | AAGGGAATTTTTGCACAGTT+TGG | - | chr1_3:33550017-33550036 | Msa0115040:intron | 35.0% |
| !! | GAGGATGTTAGAGTTGATTT+TGG | - | chr1_3:33550105-33550124 | Msa0115040:intron | 35.0% |
| !!! | GTTAGAGTTGATTTTGGGAT+TGG | - | chr1_3:33550111-33550130 | Msa0115040:intron | 35.0% |
| TTCTTGAGATCACTAAGCTT+GGG | + | chr1_3:33550418-33550437 | None:intergenic | 35.0% | |
| CTTAGTGATCTCAAGAACAT+TGG | - | chr1_3:33550421-33550440 | Msa0115040:intron | 35.0% | |
| CTTACTGAACATGAGATGAA+AGG | + | chr1_3:33550550-33550569 | None:intergenic | 35.0% | |
| AATCTATTGTACGGATCCAT+TGG | + | chr1_3:33550756-33550775 | None:intergenic | 35.0% | |
| ! | CAGAGATTTTCCGAATTTCA+GGG | - | chr1_3:33550834-33550853 | Msa0115040:intron | 35.0% |
| ! | GCAAAGTTTTCCCTGAAATT+CGG | + | chr1_3:33550847-33550866 | None:intergenic | 35.0% |
| ACATCCAGATTGCAAGAAAA+AGG | + | chr1_3:33550916-33550935 | None:intergenic | 35.0% | |
| !! | GTTAATTCATTGGTTCAGCA+CGG | - | chr1_3:33550991-33551010 | Msa0115040:intron | 35.0% |
| !! | TTAATTCATTGGTTCAGCAC+GGG | - | chr1_3:33550992-33551011 | Msa0115040:intron | 35.0% |
| ! | AGCTCAACATTCTTTCTAGT+TGG | + | chr1_3:33551066-33551085 | None:intergenic | 35.0% |
| !! | GAGGTGGATTATTTGAACTA+CGG | + | chr1_3:33551176-33551195 | None:intergenic | 35.0% |
| GTAGTTCAAATAATCCACCT+CGG | - | chr1_3:33551175-33551194 | Msa0115040:intron | 35.0% | |
| CCGTTATCCAAAGATATAGT+CGG | + | chr1_3:33551204-33551223 | None:intergenic | 35.0% | |
| CCGACTATATCTTTGGATAA+CGG | - | chr1_3:33551201-33551220 | Msa0115040:intron | 35.0% | |
| ! | CCACAAAAGTATACTTTGCA+AGG | + | chr1_3:33551258-33551277 | None:intergenic | 35.0% |
| ! | CCTTGCAAAGTATACTTTTG+TGG | - | chr1_3:33551255-33551274 | Msa0115040:intron | 35.0% |
| TTTATCTTCACGTATTTCCG+TGG | - | chr1_3:33551389-33551408 | Msa0115040:intron | 35.0% | |
| TTATCTTCACGTATTTCCGT+GGG | - | chr1_3:33551390-33551409 | Msa0115040:intron | 35.0% | |
| ! | AACTATGCCATTTCTAAGGA+TGG | + | chr1_3:33551448-33551467 | None:intergenic | 35.0% |
| ACCAAATATGTCTTCTCTGA+TGG | - | chr1_3:33551717-33551736 | Msa0115040:intron | 35.0% | |
| TCCATCAGAGAAGACATATT+TGG | + | chr1_3:33551721-33551740 | None:intergenic | 35.0% | |
| TATGTCTTCTCTGATGGAAT+TGG | - | chr1_3:33551723-33551742 | Msa0115040:intron | 35.0% | |
| ATGTCTTCTCTGATGGAATT+GGG | - | chr1_3:33551724-33551743 | Msa0115040:intron | 35.0% | |
| AAATATCTCTTGAACTTGCC+AGG | - | chr1_3:33551748-33551767 | Msa0115040:intron | 35.0% | |
| ! | CAACACAGATTTGGATGTTT+TGG | - | chr1_3:33551914-33551933 | Msa0115040:intron | 35.0% |
| !! | AACTGTCGATTCAGATAACA+AGG | + | chr1_3:33551957-33551976 | None:intergenic | 35.0% |
| GGAGATCACTAATATTCTGA+AGG | - | chr1_3:33552112-33552131 | Msa0115040:intron | 35.0% | |
| TGCAGCATCATTGAAAGAAA+TGG | + | chr1_3:33552173-33552192 | None:intergenic | 35.0% | |
| AATGATGCTGCAGACATTTA+GGG | - | chr1_3:33552181-33552200 | Msa0115040:intron | 35.0% | |
| !! | ATTTAGGGCCTCAAAACTTT+TGG | - | chr1_3:33552196-33552215 | Msa0115040:intron | 35.0% |
| !!! | CCTCAAAACTTTTGGAATTG+CGG | - | chr1_3:33552204-33552223 | Msa0115040:intron | 35.0% |
| GAAACTAGAACCCTAGAATA+TGG | - | chr1_3:33552281-33552300 | Msa0115040:intron | 35.0% | |
| AAACAACACAATCCACCATA+TGG | + | chr1_3:33552448-33552467 | None:intergenic | 35.0% | |
| !!! | TGTGTTGTTTTCCCTCAAAA+AGG | - | chr1_3:33552458-33552477 | Msa0115040:intron | 35.0% |
| ! | CTGGATGAGTTTTTCTTCAA+TGG | + | chr1_3:33552764-33552783 | None:intergenic | 35.0% |
| AAAAACTCATCCAGAGAAGT+AGG | - | chr1_3:33552770-33552789 | Msa0115040:intron | 35.0% | |
| ACCACATCCAAATGAATGTT+CGG | - | chr1_3:33552937-33552956 | Msa0115040:intron | 35.0% | |
| ATGATCCAATACCATAGGTT+TGG | + | chr1_3:33553053-33553072 | None:intergenic | 35.0% | |
| ACATCATGATCCAATACCAT+AGG | + | chr1_3:33553058-33553077 | None:intergenic | 35.0% | |
| ! | TATGGTATTGGATCATGATG+TGG | - | chr1_3:33553057-33553076 | Msa0115040:intron | 35.0% |
| !!! | TCCTTTTAGCTTTACATCTG+TGG | - | chr1_3:33553094-33553113 | Msa0115040:intron | 35.0% |
| !!! | CCTTTTAGCTTTACATCTGT+GGG | - | chr1_3:33553095-33553114 | Msa0115040:intron | 35.0% |
| !! | TCTTTTAGTTATCACCCCTT+TGG | - | chr1_3:33553286-33553305 | Msa0115040:intron | 35.0% |
| GAGCAATAATTGTTTCAGCT+AGG | - | chr1_3:33553340-33553359 | Msa0115040:intron | 35.0% | |
| TTTCAGCTAGGATTCAAACT+CGG | - | chr1_3:33553352-33553371 | Msa0115040:intron | 35.0% | |
| ATAAAATGGTTTCATGGTGC+AGG | - | chr1_3:33553443-33553462 | Msa0115040:intron | 35.0% | |
| TACATACTCAACGATTGTCT+TGG | - | chr1_3:33553489-33553508 | Msa0115040:intron | 35.0% | |
| TGAAATCTGGATATTCTGTG+GGG | + | chr1_3:33553662-33553681 | None:intergenic | 35.0% | |
| CATGAAATCTGGATATTCTG+TGG | + | chr1_3:33553664-33553683 | None:intergenic | 35.0% | |
| CACAGAATATCCAGATTTCA+TGG | - | chr1_3:33553662-33553681 | Msa0115040:intron | 35.0% | |
| ! | CAAGGTATTTCAACTAAGGA+TGG | - | chr1_3:33553747-33553766 | Msa0115040:intron | 35.0% |
| TCCCAACTTGTAGTCATAAT+TGG | + | chr1_3:33553877-33553896 | None:intergenic | 35.0% | |
| TTTCACCAAAAGAAGGGATT+CGG | - | chr1_3:33553971-33553990 | Msa0115040:intron | 35.0% | |
| TGTACAATGATGGTATGCAA+AGG | - | chr1_3:33554144-33554163 | Msa0115040:intron | 35.0% | |
| GTACAATGATGGTATGCAAA+GGG | - | chr1_3:33554145-33554164 | Msa0115040:intron | 35.0% | |
| !! | TCTTGATTTGGACAAGCAAA+TGG | + | chr1_3:33554202-33554221 | None:intergenic | 35.0% |
| TTTGCTTGTCCAAATCAAGA+AGG | - | chr1_3:33554202-33554221 | Msa0115040:intron | 35.0% | |
| AAAAAGAAACCTCAGACTTC+TGG | - | chr1_3:33554691-33554710 | Msa0115040:intron | 35.0% | |
| GTATTATGGATGAACTGAAG+TGG | - | chr1_3:33554751-33554770 | Msa0115040:intron | 35.0% | |
| ! | AGTGGTAAAGGTTTAGAGTA+AGG | - | chr1_3:33554769-33554788 | Msa0115040:intron | 35.0% |
| ! | GTGGTAAAGGTTTAGAGTAA+GGG | - | chr1_3:33554770-33554789 | Msa0115040:intron | 35.0% |
| GAGTAAGGGAAATATATACG+AGG | - | chr1_3:33554784-33554803 | Msa0115040:intron | 35.0% | |
| CACAAAAAGAACGATCAATG+TGG | - | chr1_3:33554835-33554854 | Msa0115040:intron | 35.0% | |
| TGCGAAAAGTGAGTTAATCT+TGG | - | chr1_3:33554864-33554883 | Msa0115040:intron | 35.0% | |
| TTCAATCTTCGAGTAAAGTG+GGG | + | chr1_3:33554948-33554967 | None:intergenic | 35.0% | |
| CTTTCAATCTTCGAGTAAAG+TGG | + | chr1_3:33554950-33554969 | None:intergenic | 35.0% | |
| GAAGAGGTTAGGTTTAGAAA+AGG | - | chr1_3:33555671-33555690 | Msa0115040:intron | 35.0% | |
| ! | TTAGACAGTACGTACGTTTT+TGG | - | chr1_3:33555695-33555714 | Msa0115040:intron | 35.0% |
| !!! | ACGTACGTTTTTGGTGAAAA+AGG | - | chr1_3:33555704-33555723 | Msa0115040:intron | 35.0% |
| !!! | CGTACGTTTTTGGTGAAAAA+GGG | - | chr1_3:33555705-33555724 | Msa0115040:intron | 35.0% |
| ACAAACCTTAGACATTCCAT+AGG | - | chr1_3:33555945-33555964 | Msa0115040:intron | 35.0% | |
| CAAACCTTAGACATTCCATA+GGG | - | chr1_3:33555946-33555965 | Msa0115040:intron | 35.0% | |
| AGCATCTAATTATCACCCTA+TGG | + | chr1_3:33555964-33555983 | None:intergenic | 35.0% | |
| GGTGATAATTAGATGCTGTT+TGG | - | chr1_3:33555967-33555986 | Msa0115040:intron | 35.0% | |
| GATGATAGAACCATGAGATT+AGG | - | chr1_3:33555989-33556008 | Msa0115040:intron | 35.0% | |
| GATCGCATGGAAAACAATTT+GGG | + | chr1_3:33556256-33556275 | None:intergenic | 35.0% | |
| GAATGTCACAACATCATTTG+AGG | + | chr1_3:33556440-33556459 | None:intergenic | 35.0% | |
| ! | TGTCTAAGTTGTCAAGTTGT+AGG | - | chr1_3:33556600-33556619 | Msa0115040:intron | 35.0% |
| GTCTGCATACTCATTAAAGA+TGG | - | chr1_3:33556630-33556649 | Msa0115040:intron | 35.0% | |
| CTGCATACTCATTAAAGATG+GGG | - | chr1_3:33556632-33556651 | Msa0115040:intron | 35.0% | |
| TGCATACTCATTAAAGATGG+GGG | - | chr1_3:33556633-33556652 | Msa0115040:intron | 35.0% | |
| TTTACGCTCATATATGTTGG+GGG | - | chr1_3:33556713-33556732 | Msa0115040:intron | 35.0% | |
| TCTTGATATGCAAATGCATG+TGG | + | chr1_3:33556758-33556777 | None:intergenic | 35.0% | |
| !! | GCAACATTTTCAAGCAGAAT+GGG | + | chr1_3:33557015-33557034 | None:intergenic | 35.0% |
| !! | AGCAACATTTTCAAGCAGAA+TGG | + | chr1_3:33557016-33557035 | None:intergenic | 35.0% |
| TGAAAATGTTGCTCTTCGTA+TGG | - | chr1_3:33557023-33557042 | Msa0115040:intron | 35.0% | |
| GAAAATGTTGCTCTTCGTAT+GGG | - | chr1_3:33557024-33557043 | Msa0115040:intron | 35.0% | |
| AATGTTCTTTCAACGATTCC+TGG | + | chr1_3:33557410-33557429 | None:intergenic | 35.0% | |
| TGGAAATGAACTTCATCGTA+CGG | + | chr1_3:33557495-33557514 | None:intergenic | 35.0% | |
| ! | AAGAGTGTGTTCAAGTATGT+AGG | + | chr1_3:33557611-33557630 | None:intergenic | 35.0% |
| ACATACTTGAACACACTCTT+AGG | - | chr1_3:33557611-33557630 | Msa0115040:intron | 35.0% | |
| GACGCAATTATAACTCGATT+AGG | - | chr1_3:33557706-33557725 | Msa0115040:intron | 35.0% | |
| CGCAATTATAACTCGATTAG+GGG | - | chr1_3:33557708-33557727 | Msa0115040:intron | 35.0% | |
| !! | AAATGAGGGACTAGTTTGAT+GGG | + | chr1_3:33557906-33557925 | None:intergenic | 35.0% |
| !! | AAAATGAGGGACTAGTTTGA+TGG | + | chr1_3:33557907-33557926 | None:intergenic | 35.0% |
| CTGTGAATCATTCATGCTTT+AGG | - | chr1_3:33558300-33558319 | Msa0115040:CDS | 35.0% | |
| !! | TGCTTTAGGATGAGTTTGTA+TGG | - | chr1_3:33558314-33558333 | Msa0115040:CDS | 35.0% |
| !! | GCTTTAGGATGAGTTTGTAT+GGG | - | chr1_3:33558315-33558334 | Msa0115040:CDS | 35.0% |
| !! | CTTTAGGATGAGTTTGTATG+GGG | - | chr1_3:33558316-33558335 | Msa0115040:CDS | 35.0% |
| ! | TTTAGGATGAGTTTGTATGG+GGG | - | chr1_3:33558317-33558336 | Msa0115040:CDS | 35.0% |
| GTATACTGGTGAAAGAAGTG+TGG | - | chr1_3:33549813-33549832 | Msa0115040:intron | 40.0% | |
| TGCAAATGCTGTTCGATTAC+GGG | + | chr1_3:33549866-33549885 | None:intergenic | 40.0% | |
| TGACAAACTTCTGCTAGGTA+AGG | + | chr1_3:33549932-33549951 | None:intergenic | 40.0% | |
| AATGGTGACAAACTTCTGCT+AGG | + | chr1_3:33549937-33549956 | None:intergenic | 40.0% | |
| AGTTTGTCACCATTGCAGTA+CGG | - | chr1_3:33549943-33549962 | Msa0115040:intron | 40.0% | |
| AGATATTGTTCCAAGGCCAA+GGG | - | chr1_3:33549999-33550018 | Msa0115040:intron | 40.0% | |
| ! | ATCTGTTTTATGGAGAGAGG+AGG | - | chr1_3:33550086-33550105 | Msa0115040:intron | 40.0% |
| TTGGGATTGGAATGAGAAAG+TGG | - | chr1_3:33550124-33550143 | Msa0115040:intron | 40.0% | |
| !! | TACTTTGTAGTTTTACCCCG+TGG | + | chr1_3:33550231-33550250 | None:intergenic | 40.0% |
| GTTCTTGAGATCACTAAGCT+TGG | + | chr1_3:33550419-33550438 | None:intergenic | 40.0% | |
| TCATATGTGATGTGCAGCAA+AGG | + | chr1_3:33550595-33550614 | None:intergenic | 40.0% | |
| ! | TGTAGTTAATTGGTGCTCCT+CGG | - | chr1_3:33550641-33550660 | Msa0115040:intron | 40.0% |
| GAATAAAGCTCAAAAACCCG+AGG | + | chr1_3:33550661-33550680 | None:intergenic | 40.0% | |
| TTCACTCCATGCAGTTGTAT+TGG | - | chr1_3:33550775-33550794 | Msa0115040:intron | 40.0% | |
| TCACTCCATGCAGTTGTATT+GGG | - | chr1_3:33550776-33550795 | Msa0115040:intron | 40.0% | |
| ! | GCAGAGATTTTCCGAATTTC+AGG | - | chr1_3:33550833-33550852 | Msa0115040:intron | 40.0% |
| GGAAAACTTTGCTCATTACG+AGG | - | chr1_3:33550855-33550874 | Msa0115040:intron | 40.0% | |
| ! | ATCGCCTTTTTCTTGCAATC+TGG | - | chr1_3:33550909-33550928 | Msa0115040:intron | 40.0% |
| ! | CGATTTGAGACATTGATCTC+TGG | + | chr1_3:33551282-33551301 | None:intergenic | 40.0% |
| TATATCAGTTCTTCCACCCA+CGG | + | chr1_3:33551409-33551428 | None:intergenic | 40.0% | |
| GCTAAATATGCTGCTAGACT+TGG | - | chr1_3:33551615-33551634 | Msa0115040:intron | 40.0% | |
| ! | GCTAGACTTGGACAATCTTT+TGG | - | chr1_3:33551627-33551646 | Msa0115040:intron | 40.0% |
| TTCCTCTACCGAAACTACAA+CGG | - | chr1_3:33551650-33551669 | Msa0115040:intron | 40.0% | |
| !!! | ACATTTTTTAGCCACTCTCC+TGG | + | chr1_3:33551769-33551788 | None:intergenic | 40.0% |
| AGGAGAGTGGCTAAAAAATG+TGG | - | chr1_3:33551768-33551787 | Msa0115040:intron | 40.0% | |
| CGATTCAGACAACACAGATT+TGG | - | chr1_3:33551905-33551924 | Msa0115040:intron | 40.0% | |
| CTTATCCACTCTTGATGTCA+AGG | - | chr1_3:33551986-33552005 | Msa0115040:intron | 40.0% | |
| AATGTCCTTGACATCAAGAG+TGG | + | chr1_3:33551994-33552013 | None:intergenic | 40.0% | |
| !! | GTTTTGGACTTGATGTCTTC+CGG | - | chr1_3:33552089-33552108 | Msa0115040:intron | 40.0% |
| ! | TTTTGGACTTGATGTCTTCC+GGG | - | chr1_3:33552090-33552109 | Msa0115040:intron | 40.0% |
| CAGAATATTAGTGATCTCCC+CGG | + | chr1_3:33552111-33552130 | None:intergenic | 40.0% | |
| CTGAAGGAGATGCTTATTTG+TGG | - | chr1_3:33552128-33552147 | Msa0115040:intron | 40.0% | |
| CAATGATGCTGCAGACATTT+AGG | - | chr1_3:33552180-33552199 | Msa0115040:intron | 40.0% | |
| ! | CCGCAATTCCAAAAGTTTTG+AGG | + | chr1_3:33552207-33552226 | None:intergenic | 40.0% |
| TGGAATTGCGGCAAAAAACT+AGG | - | chr1_3:33552216-33552235 | Msa0115040:intron | 40.0% | |
| TCCAAAAGGAAGAGCAATGA+TGG | - | chr1_3:33552247-33552266 | Msa0115040:intron | 40.0% | |
| CCAAAAGGAAGAGCAATGAT+GGG | - | chr1_3:33552248-33552267 | Msa0115040:intron | 40.0% | |
| TCAAAACACGAACATCACCT+GGG | + | chr1_3:33552400-33552419 | None:intergenic | 40.0% | |
| TTCAAAACACGAACATCACC+TGG | + | chr1_3:33552401-33552420 | None:intergenic | 40.0% | |
| !! | AGGTGATGTTCGTGTTTTGA+AGG | - | chr1_3:33552400-33552419 | Msa0115040:intron | 40.0% |
| ! | TTTTCCCTCAAAAAGGTCAC+AGG | - | chr1_3:33552465-33552484 | Msa0115040:intron | 40.0% |
| ! | TCTACCTGTGACCTTTTTGA+GGG | + | chr1_3:33552472-33552491 | None:intergenic | 40.0% |
| ! | ATCTACCTGTGACCTTTTTG+AGG | + | chr1_3:33552473-33552492 | None:intergenic | 40.0% |
| ACATTCATTTGGATGTGGTC+TGG | + | chr1_3:33552936-33552955 | None:intergenic | 40.0% | |
| CCACATCCAAATGAATGTTC+GGG | - | chr1_3:33552938-33552957 | Msa0115040:intron | 40.0% | |
| TCACTTCCCGAACATTCATT+TGG | + | chr1_3:33552947-33552966 | None:intergenic | 40.0% | |
| ! | GGACATCTACTTTGTTTGCT+GGG | - | chr1_3:33552976-33552995 | Msa0115040:intron | 40.0% |
| ATTGGATCAATTGTTCGAGG+TGG | + | chr1_3:33553016-33553035 | None:intergenic | 40.0% | |
| ACCTCGAACAATTGATCCAA+TGG | - | chr1_3:33553015-33553034 | Msa0115040:intron | 40.0% | |
| TCCATTGGATCAATTGTTCG+AGG | + | chr1_3:33553019-33553038 | None:intergenic | 40.0% | |
| TTGGCAGAATCATACTCCAT+TGG | + | chr1_3:33553034-33553053 | None:intergenic | 40.0% | |
| GTATGATTCTGCCAAACCTA+TGG | - | chr1_3:33553039-33553058 | Msa0115040:intron | 40.0% | |
| TTCTGCCAAACCTATGGTAT+TGG | - | chr1_3:33553045-33553064 | Msa0115040:intron | 40.0% | |
| CCCACAGATGTAAAGCTAAA+AGG | + | chr1_3:33553098-33553117 | None:intergenic | 40.0% | |
| ! | TTTTCCCTCAGAAACCAAAG+GGG | + | chr1_3:33553303-33553322 | None:intergenic | 40.0% |
| ! | CTTTTCCCTCAGAAACCAAA+GGG | + | chr1_3:33553304-33553323 | None:intergenic | 40.0% |
| ! | CTTTGGTTTCTGAGGGAAAA+GGG | - | chr1_3:33553303-33553322 | Msa0115040:intron | 40.0% |
| GAAAAGGGATTGTGGTAATC+TGG | - | chr1_3:33553318-33553337 | Msa0115040:intron | 40.0% | |
| TTCAGCTAGGATTCAAACTC+GGG | - | chr1_3:33553353-33553372 | Msa0115040:intron | 40.0% | |
| AGGTTCTTTGTCTGCAAAGA+CGG | + | chr1_3:33553535-33553554 | None:intergenic | 40.0% | |
| CAAAGAACCTGGAAAAGCAA+TGG | - | chr1_3:33553545-33553564 | Msa0115040:intron | 40.0% | |
| AGCTTTGCAAGTTCAACACA+TGG | + | chr1_3:33553576-33553595 | None:intergenic | 40.0% | |
| ! | GCAGTTGACTTTCCAAAAAC+CGG | - | chr1_3:33553606-33553625 | Msa0115040:intron | 40.0% |
| TACATCCTTCACACTTGAAG+TGG | - | chr1_3:33553776-33553795 | Msa0115040:intron | 40.0% | |
| ! | CTACAAGTTGGGAAATCTGA+TGG | - | chr1_3:33553884-33553903 | Msa0115040:intron | 40.0% |
| !! | GGAAATCTGATGGACTACTA+TGG | - | chr1_3:33553894-33553913 | Msa0115040:intron | 40.0% |
| ATGCGATTACTATGGCTGTA+AGG | - | chr1_3:33553994-33554013 | Msa0115040:intron | 40.0% | |
| CTTATGCAAAAGCTTCTGCT+TGG | - | chr1_3:33554087-33554106 | Msa0115040:intron | 40.0% | |
| ! | ACCATTTTCTCAGCTTTCCA+TGG | - | chr1_3:33554168-33554187 | Msa0115040:intron | 40.0% |
| ACCATGGAAAGCTGAGAAAA+TGG | + | chr1_3:33554172-33554191 | None:intergenic | 40.0% | |
| AGCAAATGGTAAACACACCA+TGG | + | chr1_3:33554188-33554207 | None:intergenic | 40.0% | |
| TGGCTTTCTCCTTCTTGATT+TGG | + | chr1_3:33554214-33554233 | None:intergenic | 40.0% | |
| AAATCAAGAAGGAGAAAGCC+AGG | - | chr1_3:33554213-33554232 | Msa0115040:intron | 40.0% | |
| GCATGATGCAAACTCTTTAG+TGG | - | chr1_3:33554358-33554377 | Msa0115040:intron | 40.0% | |
| ACCTGTAGCGGTATTATTCA+CGG | - | chr1_3:33554446-33554465 | Msa0115040:intron | 40.0% | |
| TGGATGAACTGAAGTGGTAA+AGG | - | chr1_3:33554757-33554776 | Msa0115040:intron | 40.0% | |
| AACTTGCAGAAGAAGACTCT+TGG | - | chr1_3:33555178-33555197 | Msa0115040:intron | 40.0% | |
| TAGAAGACTCATGACATCCA+TGG | - | chr1_3:33555205-33555224 | Msa0115040:intron | 40.0% | |
| ATCACCCTATGGAATGTCTA+AGG | + | chr1_3:33555953-33555972 | None:intergenic | 40.0% | |
| !! | GCTCTCTGGAACTCAAAAAT+TGG | + | chr1_3:33556175-33556194 | None:intergenic | 40.0% |
| GGATCGCATGGAAAACAATT+TGG | + | chr1_3:33556257-33556276 | None:intergenic | 40.0% | |
| TGTCTTGAAGTTGCATGAGT+CGG | - | chr1_3:33556513-33556532 | Msa0115040:intron | 40.0% | |
| TGAGTCGGTCTAAGTTGTAA+AGG | - | chr1_3:33556528-33556547 | Msa0115040:intron | 40.0% | |
| AGCTTTGCTCAAACTACGTT+GGG | - | chr1_3:33556669-33556688 | Msa0115040:intron | 40.0% | |
| AATGCATGTGGTACCATTCA+GGG | + | chr1_3:33556746-33556765 | None:intergenic | 40.0% | |
| AAATGCATGTGGTACCATTC+AGG | + | chr1_3:33556747-33556766 | None:intergenic | 40.0% | |
| ! | TCTTCGTATGGGTAACTTGT+AGG | - | chr1_3:33557035-33557054 | Msa0115040:intron | 40.0% |
| GGGAGTCTCTATTCACATAA+GGG | - | chr1_3:33558337-33558356 | Msa0115040:CDS | 40.0% | |
| !! | GCGGTGTCGATTAAAAGTAT+TGG | - | chr1_3:33558669-33558688 | Msa0115040:exon | 40.0% |
| GTTTGTCACCATTGCAGTAC+GGG | - | chr1_3:33549944-33549963 | Msa0115040:intron | 45.0% | |
| GAGATATTGTTCCAAGGCCA+AGG | - | chr1_3:33549998-33550017 | Msa0115040:intron | 45.0% | |
| TGCAAAAATTCCCTTGGCCT+TGG | + | chr1_3:33550012-33550031 | None:intergenic | 45.0% | |
| ! | GTAGTTAATTGGTGCTCCTC+GGG | - | chr1_3:33550642-33550661 | Msa0115040:intron | 45.0% |
| TACGGATCCATTGGTCATCA+GGG | + | chr1_3:33550747-33550766 | None:intergenic | 45.0% | |
| TTCGGAAAATCTCTGCTGCT+AGG | + | chr1_3:33550829-33550848 | None:intergenic | 45.0% | |
| TGCTCATTACGAGGAAAGTG+CGG | - | chr1_3:33550864-33550883 | Msa0115040:intron | 45.0% | |
| GATCCACTCTCCAATGTGTA+TGG | + | chr1_3:33550892-33550911 | None:intergenic | 45.0% | |
| ATTCCTTGAGGAGCAACCAT+GGG | + | chr1_3:33550943-33550962 | None:intergenic | 45.0% | |
| AATTCCTTGAGGAGCAACCA+TGG | + | chr1_3:33550944-33550963 | None:intergenic | 45.0% | |
| TCTGTTATGAACCCGTGAGA+TGG | - | chr1_3:33551127-33551146 | Msa0115040:intron | 45.0% | |
| TGATCTTTCAGCCATCTCAC+GGG | + | chr1_3:33551141-33551160 | None:intergenic | 45.0% | |
| CTGATCTTTCAGCCATCTCA+CGG | + | chr1_3:33551142-33551161 | None:intergenic | 45.0% | |
| AAAGATATAGTCGGTGACCG+AGG | + | chr1_3:33551195-33551214 | None:intergenic | 45.0% | |
| ! | TCGGTCACCGACTATATCTT+TGG | - | chr1_3:33551194-33551213 | Msa0115040:intron | 45.0% |
| !! | ACGGTTTGGTATATGTTCGC+AGG | - | chr1_3:33551220-33551239 | Msa0115040:intron | 45.0% |
| !! | CGGTTTGGTATATGTTCGCA+GGG | - | chr1_3:33551221-33551240 | Msa0115040:intron | 45.0% |
| ! | ACGTGTTTCGTTTGTTGACG+AGG | - | chr1_3:33551341-33551360 | Msa0115040:intron | 45.0% |
| ! | TTCGTTTGTTGACGAGGAGT+TGG | - | chr1_3:33551347-33551366 | Msa0115040:intron | 45.0% |
| AGTTGCGTGAAAGTTCGCTA+TGG | - | chr1_3:33551511-33551530 | Msa0115040:intron | 45.0% | |
| ATGTTTGCTCGTACACCAAC+TGG | - | chr1_3:33551534-33551553 | Msa0115040:intron | 45.0% | |
| AGATACCGCTGGATCCATAA+GGG | - | chr1_3:33551557-33551576 | Msa0115040:intron | 45.0% | |
| TGGATCCATAAGGGAATGGA+TGG | - | chr1_3:33551566-33551585 | Msa0115040:intron | 45.0% | |
| GGATCCATAAGGGAATGGAT+GGG | - | chr1_3:33551567-33551586 | Msa0115040:intron | 45.0% | |
| ATCTCCCATCCATTCCCTTA+TGG | + | chr1_3:33551574-33551593 | None:intergenic | 45.0% | |
| TTTGGACTTGATGTCTTCCG+GGG | - | chr1_3:33552091-33552110 | Msa0115040:intron | 45.0% | |
| ! | CCCATCATTGCTCTTCCTTT+TGG | + | chr1_3:33552251-33552270 | None:intergenic | 45.0% |
| !!! | TGTTCGTGTTTTGAAGGCTG+TGG | - | chr1_3:33552406-33552425 | Msa0115040:intron | 45.0% |
| CCCGAACATTCATTTGGATG+TGG | + | chr1_3:33552941-33552960 | None:intergenic | 45.0% | |
| TGTTCGGGAAGTGATCTTGA+TGG | - | chr1_3:33552953-33552972 | Msa0115040:intron | 45.0% | |
| GTTCGGGAAGTGATCTTGAT+GGG | - | chr1_3:33552954-33552973 | Msa0115040:intron | 45.0% | |
| TTCGGGAAGTGATCTTGATG+GGG | - | chr1_3:33552955-33552974 | Msa0115040:intron | 45.0% | |
| ! | GGGACATCTACTTTGTTTGC+TGG | - | chr1_3:33552975-33552994 | Msa0115040:intron | 45.0% |
| GGATCATGATGTGGAGATTG+AGG | - | chr1_3:33553066-33553085 | Msa0115040:intron | 45.0% | |
| AAAGACTCAAGCAAGCCACT+TGG | - | chr1_3:33553257-33553276 | Msa0115040:intron | 45.0% | |
| ! | TATCACCCCTTTGGTTTCTG+AGG | - | chr1_3:33553295-33553314 | Msa0115040:intron | 45.0% |
| ! | ATCACCCCTTTGGTTTCTGA+GGG | - | chr1_3:33553296-33553315 | Msa0115040:intron | 45.0% |
| ! | CCTTTTCCCTCAGAAACCAA+AGG | + | chr1_3:33553305-33553324 | None:intergenic | 45.0% |
| ! | CCTTTGGTTTCTGAGGGAAA+AGG | - | chr1_3:33553302-33553321 | Msa0115040:intron | 45.0% |
| ! | TTCTGAGGGAAAAGGGATTG+TGG | - | chr1_3:33553310-33553329 | Msa0115040:intron | 45.0% |
| GTCTTTGCAGACAAAGAACC+TGG | - | chr1_3:33553534-33553553 | Msa0115040:intron | 45.0% | |
| ! | AGGTATTTCTGCTGGGATAC+CGG | + | chr1_3:33553628-33553647 | None:intergenic | 45.0% |
| CTTAGCCACTTCAAGTGTGA+AGG | + | chr1_3:33553784-33553803 | None:intergenic | 45.0% | |
| CTTCACACTTGAAGTGGCTA+AGG | - | chr1_3:33553782-33553801 | Msa0115040:intron | 45.0% | |
| GATCCAGACATGGAATTCGA+CGG | - | chr1_3:33553813-33553832 | Msa0115040:intron | 45.0% | |
| CATGGAATTCGACGGCTTTA+TGG | - | chr1_3:33553821-33553840 | Msa0115040:intron | 45.0% | |
| ACCGAAGCAGAAATCCTAAG+TGG | - | chr1_3:33553924-33553943 | Msa0115040:intron | 45.0% | |
| CCCACTTAGGATTTCTGCTT+CGG | + | chr1_3:33553928-33553947 | None:intergenic | 45.0% | |
| CCGAAGCAGAAATCCTAAGT+GGG | - | chr1_3:33553925-33553944 | Msa0115040:intron | 45.0% | |
| GGATTCGGATGCGATTACTA+TGG | - | chr1_3:33553986-33554005 | Msa0115040:intron | 45.0% | |
| TGTAAGGTCCCTAAGGAAAG+AGG | - | chr1_3:33554010-33554029 | Msa0115040:intron | 45.0% | |
| TGGAACAAAGTTTCAGTCGC+AGG | - | chr1_3:33554255-33554274 | Msa0115040:intron | 45.0% | |
| CCTGTAGCGGTATTATTCAC+GGG | - | chr1_3:33554447-33554466 | Msa0115040:intron | 45.0% | |
| AATGGTTCACCAGAAGTCTG+AGG | + | chr1_3:33554703-33554722 | None:intergenic | 45.0% | |
| GGGCTACCTCACTCAAAAAT+TGG | + | chr1_3:33554928-33554947 | None:intergenic | 45.0% | |
| AGATGAAATTGGCACTCTCC+AGG | + | chr1_3:33555757-33555776 | None:intergenic | 45.0% | |
| CTGATATTCATCGCTCGCAA+CGG | - | chr1_3:33556046-33556065 | Msa0115040:intron | 45.0% | |
| GCGAGTACTATTGCTTGCAA+AGG | + | chr1_3:33556210-33556229 | None:intergenic | 45.0% | |
| ! | AACTAACAGTGTTACTCGCG+AGG | + | chr1_3:33556232-33556251 | None:intergenic | 45.0% |
| CTCATGACTATACGTGCGAA+AGG | + | chr1_3:33556278-33556297 | None:intergenic | 45.0% | |
| TAAACAGGCTTCTGGACATC+TGG | + | chr1_3:33556341-33556360 | None:intergenic | 45.0% | |
| CAGTCATCTAAACAGGCTTC+TGG | + | chr1_3:33556349-33556368 | None:intergenic | 45.0% | |
| GTAGTTTGAGCAAAGCTCCA+GGG | + | chr1_3:33556666-33556685 | None:intergenic | 45.0% | |
| GAGCTTTGCTCAAACTACGT+TGG | - | chr1_3:33556668-33556687 | Msa0115040:intron | 45.0% | |
| GCTTTGCTCAAACTACGTTG+GGG | - | chr1_3:33556670-33556689 | Msa0115040:intron | 45.0% | |
| CTTTGCTCAAACTACGTTGG+GGG | - | chr1_3:33556671-33556690 | Msa0115040:intron | 45.0% | |
| ATGAGCGTAAATAGGCTCCA+GGG | + | chr1_3:33556704-33556723 | None:intergenic | 45.0% | |
| TATGAGCGTAAATAGGCTCC+AGG | + | chr1_3:33556705-33556724 | None:intergenic | 45.0% | |
| CTAGGTGCTCTGATACGTAA+CGG | - | chr1_3:33557103-33557122 | Msa0115040:intron | 45.0% | |
| TAGGTGCTCTGATACGTAAC+GGG | - | chr1_3:33557104-33557123 | Msa0115040:intron | 45.0% | |
| AGCAGTGTTCTTCGTTCCTA+GGG | + | chr1_3:33558221-33558240 | None:intergenic | 45.0% | |
| AAGCAGTGTTCTTCGTTCCT+AGG | + | chr1_3:33558222-33558241 | None:intergenic | 45.0% | |
| GGGGAGTCTCTATTCACATA+AGG | - | chr1_3:33558336-33558355 | Msa0115040:CDS | 45.0% | |
| !! | ATTGAGACACGGTTTTGTGC+TGG | + | chr1_3:33558717-33558736 | None:intergenic | 45.0% |
| !! | AAATAATTAAATAATTAAGA+CGG | + | chr1_3:33555372-33555391 | None:intergenic | 5.0% |
| !! | AATATATTTATATAGTTTAT+GGG | + | chr1_3:33557859-33557878 | None:intergenic | 5.0% |
| !! | TAATATATTTATATAGTTTA+TGG | + | chr1_3:33557860-33557879 | None:intergenic | 5.0% |
| CAGGCACGGTCACATAATGA+GGG | + | chr1_3:33549771-33549790 | None:intergenic | 50.0% | |
| TCAGGCACGGTCACATAATG+AGG | + | chr1_3:33549772-33549791 | None:intergenic | 50.0% | |
| AGATTGAGCTGCATCAGCCA+CGG | - | chr1_3:33550211-33550230 | Msa0115040:intron | 50.0% | |
| TTGATCCCCCTGATGACCAA+TGG | - | chr1_3:33550737-33550756 | Msa0115040:intron | 50.0% | |
| ACGGATCCATTGGTCATCAG+GGG | + | chr1_3:33550746-33550765 | None:intergenic | 50.0% | |
| GTACGGATCCATTGGTCATC+AGG | + | chr1_3:33550748-33550767 | None:intergenic | 50.0% | |
| GACTGCCCAATACAACTGCA+TGG | + | chr1_3:33550784-33550803 | None:intergenic | 50.0% | |
| ! | GCTCATTACGAGGAAAGTGC+GGG | - | chr1_3:33550865-33550884 | Msa0115040:intron | 50.0% |
| AAGTGCGGGTCCATACACAT+TGG | - | chr1_3:33550879-33550898 | Msa0115040:intron | 50.0% | |
| GGTCCATACACATTGGAGAG+TGG | - | chr1_3:33550886-33550905 | Msa0115040:intron | 50.0% | |
| CAATCTGGATGTTGTCCCCA+TGG | - | chr1_3:33550924-33550943 | Msa0115040:intron | 50.0% | |
| TTCCTTGAGGAGCAACCATG+GGG | + | chr1_3:33550942-33550961 | None:intergenic | 50.0% | |
| TCTTCACGTATTTCCGTGGG+TGG | - | chr1_3:33551393-33551412 | Msa0115040:intron | 50.0% | |
| GAGATACCGCTGGATCCATA+AGG | - | chr1_3:33551556-33551575 | Msa0115040:intron | 50.0% | |
| CCATTCCCTTATGGATCCAG+CGG | + | chr1_3:33551565-33551584 | None:intergenic | 50.0% | |
| GACCGTTGTAGTTTCGGTAG+AGG | + | chr1_3:33551655-33551674 | None:intergenic | 50.0% | |
| GCTGCTGACCGTTGTAGTTT+CGG | + | chr1_3:33551661-33551680 | None:intergenic | 50.0% | |
| TCTTGAACTTGCCAGGAGAG+TGG | - | chr1_3:33551755-33551774 | Msa0115040:intron | 50.0% | |
| GGCTGTTGATCCAACCTCAT+CGG | - | chr1_3:33551848-33551867 | Msa0115040:intron | 50.0% | |
| GACAACTTCACCGATGAGGT+TGG | + | chr1_3:33551861-33551880 | None:intergenic | 50.0% | |
| CAGTGACAACTTCACCGATG+AGG | + | chr1_3:33551865-33551884 | None:intergenic | 50.0% | |
| CATCGGTGAAGTTGTCACTG+AGG | - | chr1_3:33551865-33551884 | Msa0115040:intron | 50.0% | |
| ! | AGATTCGACAAAGGCACACG+AGG | - | chr1_3:33552067-33552086 | Msa0115040:intron | 50.0% |
| !! | GACAAAGGCACACGAGGTTT+TGG | - | chr1_3:33552073-33552092 | Msa0115040:intron | 50.0% |
| TGCAAAGACGGTGTGTGCAT+TGG | + | chr1_3:33553523-33553542 | None:intergenic | 50.0% | |
| GAACCTGGAAAAGCAATGGC+AGG | - | chr1_3:33553549-33553568 | Msa0115040:intron | 50.0% | |
| !!! | TCTGCTGGGATACCGGTTTT+TGG | + | chr1_3:33553621-33553640 | None:intergenic | 50.0% |
| ! | GACGACGAGGTATTTCTGCT+GGG | + | chr1_3:33553635-33553654 | None:intergenic | 50.0% |
| ! | AGACGACGAGGTATTTCTGC+TGG | + | chr1_3:33553636-33553655 | None:intergenic | 50.0% |
| GGAGTCGTATGATCCAGACA+TGG | - | chr1_3:33553803-33553822 | Msa0115040:intron | 50.0% | |
| AAGCCGTCGAATTCCATGTC+TGG | + | chr1_3:33553819-33553838 | None:intergenic | 50.0% | |
| ! | CGCATCCGAATCCCTTCTTT+TGG | + | chr1_3:33553979-33553998 | None:intergenic | 50.0% |
| CTATGGCTGTAAGGTCCCTA+AGG | - | chr1_3:33554003-33554022 | Msa0115040:intron | 50.0% | |
| ACTCCTCGCCTCTTTCCTTA+GGG | + | chr1_3:33554021-33554040 | None:intergenic | 50.0% | |
| AACTCCTCGCCTCTTTCCTT+AGG | + | chr1_3:33554022-33554041 | None:intergenic | 50.0% | |
| TAAGGAAAGAGGCGAGGAGT+TGG | - | chr1_3:33554021-33554040 | Msa0115040:intron | 50.0% | |
| ! | GCGAGGAGTTGGTTCAATGA+CGG | - | chr1_3:33554032-33554051 | Msa0115040:intron | 50.0% |
| ! | AGGAGTTGGTTCAATGACGG+CGG | - | chr1_3:33554035-33554054 | Msa0115040:intron | 50.0% |
| AGAAGGAGAAAGCCAGGATG+AGG | - | chr1_3:33554219-33554238 | Msa0115040:intron | 50.0% | |
| GATGAGGATGCATTCGAGCA+TGG | - | chr1_3:33554235-33554254 | Msa0115040:intron | 50.0% | |
| CCCGTGAATAATACCGCTAC+AGG | + | chr1_3:33554450-33554469 | None:intergenic | 50.0% | |
| GGGAGAAAGAGTCAGAGAAG+AGG | - | chr1_3:33555725-33555744 | Msa0115040:intron | 50.0% | |
| TCAGAGAAGAGGAGAAGACC+TGG | - | chr1_3:33555736-33555755 | Msa0115040:intron | 50.0% | |
| GAGCGATGAATATCAGGCTC+GGG | + | chr1_3:33556042-33556061 | None:intergenic | 50.0% | |
| CGAGCGATGAATATCAGGCT+CGG | + | chr1_3:33556043-33556062 | None:intergenic | 50.0% | |
| CGTTGCGAGCGATGAATATC+AGG | + | chr1_3:33556048-33556067 | None:intergenic | 50.0% | |
| !! | CAAAAATTGGCTTGCTCGCG+AGG | + | chr1_3:33556162-33556181 | None:intergenic | 50.0% |
| ATACGTGCGAAAGGATCGCA+TGG | + | chr1_3:33556269-33556288 | None:intergenic | 50.0% | |
| CGTAGTTTGAGCAAAGCTCC+AGG | + | chr1_3:33556667-33556686 | None:intergenic | 50.0% | |
| !! | AGATTAGAGGCGTTCGTGAG+TGG | - | chr1_3:33557064-33557083 | Msa0115040:intron | 50.0% |
| GGACTCCTCACATTGTGTCT+AGG | - | chr1_3:33557085-33557104 | Msa0115040:intron | 50.0% | |
| GAGCACCTAGACACAATGTG+AGG | + | chr1_3:33557093-33557112 | None:intergenic | 50.0% | |
| ! | TGCTCTGATACGTAACGGGA+TGG | - | chr1_3:33557108-33557127 | Msa0115040:intron | 50.0% |
| ! | GCTCTGATACGTAACGGGAT+GGG | - | chr1_3:33557109-33557128 | Msa0115040:intron | 50.0% |
| CATAGAAGTCTTTGGCACGC+AGG | + | chr1_3:33557224-33557243 | None:intergenic | 50.0% | |
| TAGGAGCTCCCGTACTGCAA+TGG | + | chr1_3:33549955-33549974 | None:intergenic | 55.0% | |
| GATTGAGCTGCATCAGCCAC+GGG | - | chr1_3:33550212-33550231 | Msa0115040:intron | 55.0% | |
| ATTGAGCTGCATCAGCCACG+GGG | - | chr1_3:33550213-33550232 | Msa0115040:intron | 55.0% | |
| CGGATCCATTGGTCATCAGG+GGG | + | chr1_3:33550745-33550764 | None:intergenic | 55.0% | |
| GTTCAGCACGGGTGTCTTTC+AGG | - | chr1_3:33551003-33551022 | Msa0115040:intron | 55.0% | |
| GATATAGTCGGTGACCGAGG+TGG | + | chr1_3:33551192-33551211 | None:intergenic | 55.0% | |
| ACACCAACTGGAGATACCGC+TGG | - | chr1_3:33551546-33551565 | Msa0115040:intron | 55.0% | |
| GATCCAGCGGTATCTCCAGT+TGG | + | chr1_3:33551552-33551571 | None:intergenic | 55.0% | |
| CCGCTGGATCCATAAGGGAA+TGG | - | chr1_3:33551562-33551581 | Msa0115040:intron | 55.0% | |
| TTCTATGCCGTCTGCCTTCC+AGG | - | chr1_3:33551797-33551816 | Msa0115040:intron | 55.0% | |
| TACCGAACCTGGAAGGCAGA+CGG | + | chr1_3:33551807-33551826 | None:intergenic | 55.0% | |
| ! | TCTGCCTTCCAGGTTCGGTA+TGG | - | chr1_3:33551807-33551826 | Msa0115040:intron | 55.0% |
| !! | GTTCGGTATGGCGGGTACAA+AGG | - | chr1_3:33551819-33551838 | Msa0115040:intron | 55.0% |
| ! | TGGCGGGTACAAAGGAGTTG+TGG | - | chr1_3:33551827-33551846 | Msa0115040:intron | 55.0% |
| AAAAACCCGTGCTTGCACCC+AGG | - | chr1_3:33552380-33552399 | Msa0115040:intron | 55.0% | |
| ACATCACCTGGGTGCAAGCA+CGG | + | chr1_3:33552389-33552408 | None:intergenic | 55.0% | |
| TGTGCCAGCTTTGCGCCATA+TGG | - | chr1_3:33552430-33552449 | Msa0115040:intron | 55.0% | |
| TCCACCATATGGCGCAAAGC+TGG | + | chr1_3:33552437-33552456 | None:intergenic | 55.0% | |
| !! | GGACCTGCCATTGCTTTTCC+AGG | + | chr1_3:33553555-33553574 | None:intergenic | 55.0% |
| TCTGTGGGGATAAGACGACG+AGG | + | chr1_3:33553648-33553667 | None:intergenic | 55.0% | |
| ! | GGAGTTGGTTCAATGACGGC+GGG | - | chr1_3:33554036-33554055 | Msa0115040:intron | 55.0% |
| ! | GAGTTGGTTCAATGACGGCG+GGG | - | chr1_3:33554037-33554056 | Msa0115040:intron | 55.0% |
| GCTCGAATGCATCCTCATCC+TGG | + | chr1_3:33554234-33554253 | None:intergenic | 55.0% | |
| GATGAAGCTCATAGCTCGCG+AGG | + | chr1_3:33556088-33556107 | None:intergenic | 55.0% | |
| GGCGAGCAAAACATGCTCTC+TGG | + | chr1_3:33556189-33556208 | None:intergenic | 55.0% | |
| ! | GGAAAACGGGGTGTTACACC+AGG | - | chr1_3:33557389-33557408 | Msa0115040:intron | 55.0% |
| GTCCCCATGGTTGCTCCTCA+AGG | - | chr1_3:33550937-33550956 | Msa0115040:intron | 60.0% | |
| TGCCGTCTGCCTTCCAGGTT+CGG | - | chr1_3:33551802-33551821 | Msa0115040:intron | 60.0% | |
| ! | GCCTTCCAGGTTCGGTATGG+CGG | - | chr1_3:33551810-33551829 | Msa0115040:intron | 60.0% |
| ! | CCTTCCAGGTTCGGTATGGC+GGG | - | chr1_3:33551811-33551830 | Msa0115040:intron | 60.0% |
| TGTACCCGCCATACCGAACC+TGG | + | chr1_3:33551818-33551837 | None:intergenic | 60.0% | |
| CATCACCTGGGTGCAAGCAC+GGG | + | chr1_3:33552388-33552407 | None:intergenic | 60.0% | |
| GCCAGCTTTGCGCCATATGG+TGG | - | chr1_3:33552433-33552452 | Msa0115040:intron | 60.0% | |
| GGTCCCTAAGGAAAGAGGCG+AGG | - | chr1_3:33554015-33554034 | Msa0115040:intron | 60.0% | |
| GCGGGGCTGATGTAGATGCT+GGG | - | chr1_3:33554054-33554073 | Msa0115040:intron | 60.0% | |
| !! | GAGTACTGGGTTTGCTCGCG+AGG | + | chr1_3:33556116-33556135 | None:intergenic | 60.0% |
| TGCTCGCAGTGGCGAGTACT+GGG | + | chr1_3:33556129-33556148 | None:intergenic | 60.0% | |
| TTGCTCGCAGTGGCGAGTAC+TGG | + | chr1_3:33556130-33556149 | None:intergenic | 60.0% | |
| ! | GCGAGCTACTTTGCTCGCAG+TGG | + | chr1_3:33556140-33556159 | None:intergenic | 60.0% |
| AAGATGGGGGCTTGATGCCC+TGG | - | chr1_3:33556646-33556665 | Msa0115040:intron | 60.0% | |
| TGGGGGCTTGATGCCCTGAA+TGG | - | chr1_3:33556730-33556749 | Msa0115040:intron | 60.0% | |
| CCCGCCATACCGAACCTGGA+AGG | + | chr1_3:33551814-33551833 | None:intergenic | 65.0% | |
| GGCGGGGCTGATGTAGATGC+TGG | - | chr1_3:33554053-33554072 | Msa0115040:intron | 65.0% | |
| ACGTTGGGGGCTTGATGCCC+TGG | - | chr1_3:33556684-33556703 | Msa0115040:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 33549622 | 33558789 | 33549622 | ID=Msa0115040;Name=Msa0115040 |
| chr1_3 | mRNA | 33549622 | 33558789 | 33549622 | ID=Msa0115040-mRNA-1;Parent=Msa0115040;Name=Msa0115040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=111|0|0.5|0.5|1|1|2|0|200 |
| chr1_3 | exon | 33549622 | 33549693 | 33549622 | ID=Msa0115040-mRNA-1:exon:10512;Parent=Msa0115040-mRNA-1 |
| chr1_3 | exon | 33558148 | 33558789 | 33558148 | ID=Msa0115040-mRNA-1:exon:10511;Parent=Msa0115040-mRNA-1 |
| chr1_3 | five_prime_UTR | 33558679 | 33558789 | 33558679 | ID=Msa0115040-mRNA-1:five_prime_utr;Parent=Msa0115040-mRNA-1 |
| chr1_3 | CDS | 33558148 | 33558678 | 33558148 | ID=Msa0115040-mRNA-1:cds;Parent=Msa0115040-mRNA-1 |
| chr1_3 | CDS | 33549622 | 33549693 | 33549622 | ID=Msa0115040-mRNA-1:cds;Parent=Msa0115040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
