AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0166870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166870 MtrunA17_Chr1g0182391 97.273 880 24 0 1 880 1 880 0.0 1736
Msa0166870 MtrunA17_Chr5g0438781 87.955 880 106 0 1 880 1 880 0.0 1503
Msa0166870 MtrunA17_Chr7g0232251 31.543 875 571 8 18 880 19 877 6.77e-127 403
Msa0166870 MtrunA17_Chr3g0102941 75.714 140 18 2 724 861 15 140 4.16e-59 198
Msa0166870 MtrunA17_Chr8g0365251 82.143 84 15 0 252 335 2 85 3.38e-38 137
Msa0166870 MtrunA17_Chr5g0427091 74.713 87 21 1 275 360 1 87 2.39e-33 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166870 AT1G55250.5 55.215 882 392 3 1 880 1 881 0.0 935
Msa0166870 AT1G55250.3 54.111 900 392 6 1 880 1 899 0.0 915
Msa0166870 AT1G55250.1 53.710 903 392 5 1 880 1 900 0.0 912
Msa0166870 AT1G55250.2 57.895 380 159 1 502 880 4 383 3.36e-143 429
Msa0166870 AT1G55250.4 55.838 394 159 2 502 880 4 397 2.67e-139 420
Msa0166870 AT2G44950.1 30.587 886 589 11 8 880 6 878 5.82e-116 375
Msa0166870 AT2G44950.2 29.718 673 450 9 8 669 6 666 2.67e-73 254

Find 172 sgRNAs with CRISPR-Local

Find 904 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCGAAAATTGATTGCTTAT+TGG 0.134150 1_4:+48461280 None:intergenic
TTCCCTCAATAGAATCTTTC+TGG 0.156125 1_4:+48472873 None:intergenic
CTTCCACATCTTTCTGAATT+TGG 0.157200 1_4:+48463540 None:intergenic
TTTCTAGTTGGTTGATGATA+TGG 0.226057 1_4:-48473134 Msa0166870:intron
CCTTGTGCTGTTTAATGTTT+TGG 0.226756 1_4:-48461361 Msa0166870:three_prime_UTR
CAGAATTCAGCTCAGCAATT+TGG 0.228587 1_4:+48462544 None:intergenic
GAAGGAGTTGAAGTTGAAAT+TGG 0.231877 1_4:-48469445 Msa0166870:CDS
TCAACATTGGATTGCTGAAT+TGG 0.236912 1_4:-48469617 Msa0166870:CDS
CAAATGTGCTGAACAGGTTT+TGG 0.250460 1_4:-48467826 Msa0166870:CDS
GCTGAACAAGCTGCTGATTC+TGG 0.251145 1_4:+48473346 None:intergenic
ATTGACAAACCTGAAGTTCT+TGG 0.253258 1_4:+48469804 None:intergenic
GGAGAATGGTTGGTTGAATT+TGG 0.292304 1_4:+48474900 None:intergenic
GTTACAGATTGAAAAGTTAC+AGG 0.298097 1_4:-48467446 Msa0166870:intron
TCTGACATTAAACGCCTTAC+AGG 0.299793 1_4:-48472383 Msa0166870:intron
CAAAGATTCTTTGGAAACTT+TGG 0.300310 1_4:-48473083 Msa0166870:CDS
CAAACAAACAACATTGAAAA+AGG 0.303597 1_4:+48461336 None:intergenic
GATTGATGATATGACGAAAA+AGG 0.308345 1_4:-48472507 Msa0166870:CDS
TTCTGCGAATTTGAAGAAAA+AGG 0.321727 1_4:+48475003 None:intergenic
CTTTCAGATTCTCTAACTTC+TGG 0.330016 1_4:+48466592 None:intergenic
GCCCTGTCTGCAGGCTTCTC+AGG 0.332687 1_4:+48470026 None:intergenic
AACGCAGAAACACGCTTTAC+AGG 0.334237 1_4:-48473316 Msa0166870:CDS
TCGGGAGTTAGAATTTGTTT+TGG 0.337092 1_4:-48467416 Msa0166870:CDS
TGGGAGAGGCAAAGATTCTT+TGG 0.337753 1_4:-48473092 Msa0166870:CDS
TATCATCAATCTTAGACATT+TGG 0.341485 1_4:+48472519 None:intergenic
TTCAGCTTTATCTAAAGAAA+TGG 0.347729 1_4:-48469167 Msa0166870:CDS
AAGCTGAACTAGAGGAGTTA+AGG 0.349863 1_4:-48466450 Msa0166870:CDS
TTCCCACCTGGCAAACTCTA+AGG 0.353582 1_4:+48463631 None:intergenic
AGAGTTTGCCAGGTGGGAAT+TGG 0.354577 1_4:-48463627 Msa0166870:CDS
TCAGCTTTATCTAAAGAAAT+GGG 0.360839 1_4:-48469166 Msa0166870:CDS
AAAGAAATTCCAAGAACTTC+AGG 0.368208 1_4:-48469813 Msa0166870:intron
TGCAAACAAATGTGCTGAAC+AGG 0.371578 1_4:-48467832 Msa0166870:CDS
CTTCTTCCTAATGCTTCGTT+TGG 0.373933 1_4:-48475028 Msa0166870:five_prime_UTR
AGATGAGGCTTCTTGTTGTT+GGG 0.375831 1_4:+48474951 None:intergenic
TCAATGTTCCTGTAGACTAT+TGG 0.378826 1_4:-48464714 Msa0166870:intron
TTCCCTTCCTTCGTGTCATC+CGG 0.390660 1_4:-48472921 Msa0166870:CDS
GTTGATGATATGGCTCTTCT+CGG 0.394275 1_4:-48473124 Msa0166870:CDS
CAAATGATCAACTTCAACAT+TGG 0.395091 1_4:-48469630 Msa0166870:CDS
AAACCCATGGCCCTGTCTGC+AGG 0.401224 1_4:+48470017 None:intergenic
CCTGCCTGTGGAACAGCATT+TGG 0.404398 1_4:-48461443 Msa0166870:CDS
AACCTCGATTTCAGATATAT+AGG 0.404698 1_4:+48464828 None:intergenic
TACGATGGAAGAGGCCAAAC+AGG 0.408232 1_4:-48469316 Msa0166870:CDS
AGCTGAACTAGAGGAGTTAA+GGG 0.411687 1_4:-48466449 Msa0166870:CDS
CAATTCCCGAGTATACTCTT+TGG 0.412514 1_4:-48469653 Msa0166870:CDS
ATCCAGAAAGATTCTATTGA+GGG 0.419466 1_4:-48472875 Msa0166870:CDS
ATTTAGCGGCTTCTGATAGA+AGG 0.423094 1_4:+48463684 None:intergenic
AAGATGAGGCTTCTTGTTGT+TGG 0.429347 1_4:+48474950 None:intergenic
AAGGAACCAAACGAAGCATT+AGG 0.432172 1_4:+48475022 None:intergenic
GGTGAAACGCGGGAAGAAAC+AGG 0.432248 1_4:+48474921 None:intergenic
TCAAGATTTCTTTGTATACA+TGG 0.438637 1_4:+48461485 None:intergenic
CAGCCGCCTTAGAGTTTGCC+AGG 0.439108 1_4:-48463637 Msa0166870:CDS
AAAAGTTACAGGAGGAGAAT+CGG 0.444664 1_4:-48467435 Msa0166870:CDS
GCTCTTCTCGGGATACAAGC+TGG 0.449889 1_4:-48473112 Msa0166870:CDS
TCCAATGCTGATTCAGTGAA+TGG 0.450902 1_4:-48470059 Msa0166870:CDS
GGAAGCTTGTGAAAAGGAAT+TGG 0.451020 1_4:-48463522 Msa0166870:CDS
TCAAATTCGCAGAACCCAAA+TGG 0.455534 1_4:-48474994 Msa0166870:exon
TTCATCTTGAGTACATTTAG+CGG 0.459767 1_4:+48463670 None:intergenic
AATGCAAAAGGATGCAGCTA+TGG 0.467843 1_4:-48470093 Msa0166870:CDS
TGCTCCGTCCAGGCTGATGC+AGG 0.468473 1_4:-48473381 Msa0166870:intron
TCCTGAGAAGCCTGCAGACA+GGG 0.471244 1_4:-48470027 Msa0166870:CDS
ATCTAAAGAAATGGGGATGA+TGG 0.472663 1_4:-48469158 Msa0166870:CDS
ACGCAGACCAGTATCCTGTT+TGG 0.480102 1_4:+48469302 None:intergenic
CAGGGTTAACGTCTCAAAAC+GGG 0.481009 1_4:-48469469 Msa0166870:CDS
TCCATTCACTGAATCAGCAT+TGG 0.484524 1_4:+48470058 None:intergenic
GAAGAGGCCAAACAGGATAC+TGG 0.487514 1_4:-48469309 Msa0166870:intron
CCCAGTTTGATGAAAATGAA+AGG 0.491792 1_4:-48466426 Msa0166870:intron
CATTTGCCAAAGAGTATACT+CGG 0.492660 1_4:+48469647 None:intergenic
CTACATAGAAGTAGATCATC+CGG 0.493035 1_4:+48472902 None:intergenic
GCCTAGAAGATTATCAGAAA+AGG 0.494202 1_4:-48467384 Msa0166870:intron
AAGAATTGAGGATATAGGTC+AGG 0.494365 1_4:-48472741 Msa0166870:CDS
CGCCTTAGAGTTTGCCAGGT+GGG 0.494648 1_4:-48463633 Msa0166870:CDS
TTATGTCATGCAGGAGTTCA+CGG 0.495128 1_4:-48462602 Msa0166870:intron
TTCCACAGGCAGGACATTTG+CGG 0.497983 1_4:+48461453 None:intergenic
AAACATTTCAAATACCTGTA+AGG 0.500187 1_4:+48472369 None:intergenic
AAAGTTACAGGAGGAGAATC+GGG 0.500243 1_4:-48467434 Msa0166870:CDS
ATGGAAAGAATTGAGGATAT+AGG 0.501506 1_4:-48472746 Msa0166870:CDS
AGGCAGGACATTTGCGGTGA+CGG 0.501630 1_4:+48461459 None:intergenic
AATCCAGAAAGATTCTATTG+AGG 0.504272 1_4:-48472876 Msa0166870:CDS
CTCTTCTCGGGATACAAGCT+GGG 0.505460 1_4:-48473111 Msa0166870:CDS
GCAGGGTTAACGTCTCAAAA+CGG 0.509035 1_4:-48469470 Msa0166870:CDS
TGAGGCTATTAAAGTTAAAG+AGG 0.509176 1_4:-48464863 Msa0166870:CDS
CTCCTGAGAAGCCTGCAGAC+AGG 0.509679 1_4:-48470028 Msa0166870:CDS
CTTGTCTAAAAGTACTATCA+AGG 0.510264 1_4:+48461312 None:intergenic
AATCACTTCACGAAAATTGT+CGG 0.513242 1_4:+48472481 None:intergenic
TTCTGAGCTCCAAGATGCAC+GGG 0.513678 1_4:-48469855 Msa0166870:CDS
CTGTCCAAATGCTGTTCCAC+AGG 0.513830 1_4:+48461439 None:intergenic
ATTCACTGAATCAGCATTGG+AGG 0.514943 1_4:+48470061 None:intergenic
CCAAATGCTGTTCCACAGGC+AGG 0.515641 1_4:+48461443 None:intergenic
GTTCAGCACATTTGTTTGCA+AGG 0.516708 1_4:+48467835 None:intergenic
ATTGGACAGATATAAATCAT+TGG 0.516869 1_4:-48469599 Msa0166870:CDS
AGATGTGGAAGCTTGTGAAA+AGG 0.521111 1_4:-48463528 Msa0166870:CDS
CAAAGCCGAGTTTCGTGTGA+TGG 0.522522 1_4:-48469191 Msa0166870:CDS
CTGTTGAAGTTGATCAGCTA+AGG 0.522647 1_4:+48463878 None:intergenic
ATTGTGAAACTGTGTTGAGT+TGG 0.522872 1_4:+48475058 None:intergenic
CATATGTATTATACCTTCTG+TGG 0.523609 1_4:+48472700 None:intergenic
AAAAGGAATTGGACAGTGAA+AGG 0.524187 1_4:-48463511 Msa0166870:intron
TTGATGATATGGCTCTTCTC+GGG 0.526932 1_4:-48473123 Msa0166870:CDS
CTCAATTGAATGCTTCAACT+CGG 0.529213 1_4:+48469992 None:intergenic
CACGGAGATTTATCCACAGA+AGG 0.529280 1_4:-48472713 Msa0166870:intron
TCCATGACAATTCTGACTCT+AGG 0.530871 1_4:-48469398 Msa0166870:CDS
AGTGAGTCTGAAAATGCAAA+AGG 0.532068 1_4:-48470105 Msa0166870:CDS
AATGAAGTCTACAAAAGCAT+TGG 0.533686 1_4:-48467802 Msa0166870:intron
AATCAACCAACACTGGGATC+AGG 0.540393 1_4:-48473229 Msa0166870:intron
TAATTGCAATCAACCAACAC+TGG 0.541368 1_4:-48473236 Msa0166870:CDS
TTTGCTGTTAGGAGAATGGT+TGG 0.546271 1_4:+48474890 None:intergenic
GCATTCAATTGAGGAAGCCA+AGG 0.546475 1_4:-48469982 Msa0166870:intron
AGGAGAGCTTGACGAGATTG+TGG 0.546788 1_4:-48470156 Msa0166870:CDS
ATGCAAAAGGATGCAGCTAT+GGG 0.546927 1_4:-48470092 Msa0166870:CDS
TGAAGCCATCACACGAAACT+CGG 0.548398 1_4:+48469186 None:intergenic
TCCTAGAGTCAGAATTGTCA+TGG 0.550226 1_4:+48469397 None:intergenic
TAGATAACCGACGCAAAGCA+AGG 0.552835 1_4:+48472813 None:intergenic
ATCATTGGCAGAGTCTCTGC+AGG 0.554470 1_4:-48469584 Msa0166870:intron
GAAACAGGAGTGAGAAGATG+AGG 0.556873 1_4:+48474936 None:intergenic
AAGCCTGCAGACAGGGCCAT+GGG 0.559995 1_4:-48470020 Msa0166870:CDS
CTCGGGATACAAGCTGGGAG+AGG 0.560356 1_4:-48473106 Msa0166870:CDS
CCAACATCTGTTGCAGCAAG+TGG 0.560620 1_4:-48464661 Msa0166870:CDS
GAAGCCTGCAGACAGGGCCA+TGG 0.560728 1_4:-48470021 Msa0166870:CDS
AGGAAGCCCTTGCTTTGCGT+CGG 0.560789 1_4:-48472820 Msa0166870:CDS
CGAGTTGAAGCATTCAATTG+AGG 0.561024 1_4:-48469991 Msa0166870:CDS
TGATCAGATGGAAAGAATTG+AGG 0.561074 1_4:-48472753 Msa0166870:CDS
TATTAAAGTTAAAGAGGCTG+AGG 0.563348 1_4:-48464857 Msa0166870:CDS
GAGGGATGACTATAATATCA+AGG 0.565391 1_4:-48464634 Msa0166870:intron
TTTGCGTCGGTTATCTACTA+CGG 0.570748 1_4:-48472807 Msa0166870:CDS
CATCCGGATGACACGAAGGA+AGG 0.572324 1_4:+48472918 None:intergenic
CTGAAGCTGCTTGTGAACAA+AGG 0.572664 1_4:-48466486 Msa0166870:CDS
TAACGTCTCAAAACGGGAGA+AGG 0.575407 1_4:-48469463 Msa0166870:CDS
GGAATTGGCTGATGCTGAGA+AGG 0.575750 1_4:-48463612 Msa0166870:CDS
TGAGATTACTAATTATGTTG+AGG 0.578428 1_4:-48472840 Msa0166870:CDS
CCACTTGCTGCAACAGATGT+TGG 0.580687 1_4:+48464661 None:intergenic
TCTTGAAATTACGATGGAAG+AGG 0.580999 1_4:-48469325 Msa0166870:CDS
TTTCTGAGCTCCAAGATGCA+CGG 0.582913 1_4:-48469856 Msa0166870:CDS
AGATACCGTTGATGATCAGA+TGG 0.584592 1_4:-48472765 Msa0166870:CDS
TCACTAAGAGCAACATTGAG+TGG 0.584786 1_4:-48469070 Msa0166870:CDS
GAATAACCTGATCCCAGTGT+TGG 0.585715 1_4:+48473223 None:intergenic
AACCTATATATCTGAAATCG+AGG 0.589196 1_4:-48464830 Msa0166870:intron
TGGACGCGCAGGTGAAGCGA+TGG 0.595204 1_4:-48469138 Msa0166870:CDS
AGCATCAGCCAATTCCCACC+TGG 0.596588 1_4:+48463619 None:intergenic
ATCCGGATGACACGAAGGAA+GGG 0.598223 1_4:+48472919 None:intergenic
CAGCTTTATCTAAAGAAATG+GGG 0.599897 1_4:-48469165 Msa0166870:CDS
AATGGGGATGATGGACGCGC+AGG 0.601054 1_4:-48469149 Msa0166870:CDS
TCTTTCCATCTGATCATCAA+CGG 0.601325 1_4:+48472760 None:intergenic
CGACCAAATTCAGAAAGATG+TGG 0.602428 1_4:-48463543 Msa0166870:CDS
ATTGCTGAGCTGAATTCTGA+AGG 0.603898 1_4:-48462540 Msa0166870:CDS
AGATAACCGACGCAAAGCAA+GGG 0.606298 1_4:+48472814 None:intergenic
CACCGCAAATGTCCTGCCTG+TGG 0.609399 1_4:-48461455 Msa0166870:CDS
AAACACAAGGAGTATACTGT+TGG 0.609461 1_4:-48472443 Msa0166870:CDS
CTGTTCTGACCGTCCAAAGG+AGG 0.610575 1_4:-48462448 Msa0166870:intron
CAGAAGTTAGAGAATCTGAA+AGG 0.612893 1_4:-48466591 Msa0166870:CDS
TCTTGTTGTTGGGTTCGTCG+TGG 0.614659 1_4:+48474961 None:intergenic
CCAAAACATTAAACAGCACA+AGG 0.616290 1_4:+48461361 None:intergenic
AAGAGCAACATTGAGTGGAA+AGG 0.617926 1_4:-48469065 Msa0166870:intron
GTTGAGTTGGAAAATGAAGA+AGG 0.619761 1_4:+48475071 None:intergenic
GTTGCAGCAAGTGGCTGAGA+GGG 0.621288 1_4:-48464652 Msa0166870:CDS
TGGAGTCTGCTGTTAATGCA+AGG 0.625436 1_4:-48469425 Msa0166870:CDS
TGTCTGTTCTGACCGTCCAA+AGG 0.626715 1_4:-48462451 Msa0166870:CDS
TGCTGCAGAAGCTGAACTAG+AGG 0.629556 1_4:-48466458 Msa0166870:CDS
AATTGCAATCAACCAACACT+GGG 0.631357 1_4:-48473235 Msa0166870:CDS
AAGTACCTTGTGGATTATCG+AGG 0.633911 1_4:+48473056 None:intergenic
TGTTGCAGCAAGTGGCTGAG+AGG 0.640275 1_4:-48464653 Msa0166870:CDS
CTTCAACTCGGACAAACCCA+TGG 0.641274 1_4:+48470004 None:intergenic
GAATGATCTTGAAATTACGA+TGG 0.643737 1_4:-48469331 Msa0166870:CDS
GGTTGAATTTGGTGAAACGC+GGG 0.644185 1_4:+48474911 None:intergenic
GAGTTCACGGAAGAAGCTTG+AGG 0.652822 1_4:-48462589 Msa0166870:CDS
ACAGATTGAAAAGTTACAGG+AGG 0.653733 1_4:-48467443 Msa0166870:intron
AGATCATCCGGATGACACGA+AGG 0.657010 1_4:+48472914 None:intergenic
TACTCTCCATGCAAAACACA+AGG 0.662712 1_4:-48472456 Msa0166870:CDS
GCTTGTATCAGAAAGCGTGA+AGG 0.670954 1_4:-48463940 Msa0166870:CDS
ATTTGCCAAAGAGTATACTC+GGG 0.676867 1_4:+48469648 None:intergenic
CAAACTCTAAGGCGGCTGCG+AGG 0.683577 1_4:+48463642 None:intergenic
CCGCCTTAGAGTTTGCCAGG+TGG 0.688256 1_4:-48463634 Msa0166870:CDS
TGGTTGAATTTGGTGAAACG+CGG 0.705123 1_4:+48474910 None:intergenic
CCACCTGGCAAACTCTAAGG+CGG 0.716860 1_4:+48463634 None:intergenic
GATTACCTCGATAATCCACA+AGG 0.721386 1_4:-48473061 Msa0166870:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTTTAATAATTAA+AGG - chr1_4:48466091-48466110 Msa0166870:intron 0.0%
!! ATTATTCAAATTACTTAAAT+AGG + chr1_4:48462138-48462157 None:intergenic 10.0%
!! AAGAAATATAATTAAACAAA+AGG + chr1_4:48464063-48464082 None:intergenic 10.0%
!!! TAATATTTGTTAAATATCAT+TGG - chr1_4:48464238-48464257 Msa0166870:intron 10.0%
!! AAAAGATTATTAAATAGAAT+TGG + chr1_4:48464265-48464284 None:intergenic 10.0%
!!! CTTGATTATTTTTTTTTTTT+TGG + chr1_4:48465247-48465266 None:intergenic 10.0%
!! TTTATATCTTTAATATATAC+AGG - chr1_4:48470217-48470236 Msa0166870:intron 10.0%
!!! CACTAATATATTATTAATTT+TGG - chr1_4:48471798-48471817 Msa0166870:intron 10.0%
!! TTAAAAAAAAAATGAAGAAA+TGG + chr1_4:48471986-48472005 None:intergenic 10.0%
!!! TTTCTTCATTTTTTTTTTAA+AGG - chr1_4:48471986-48472005 Msa0166870:intron 10.0%
!!! TTTTTTTTAAAGGTTTTTAT+CGG - chr1_4:48471996-48472015 Msa0166870:intron 10.0%
!! AAAATAAAATTTATAAGTAG+GGG + chr1_4:48472493-48472512 None:intergenic 10.0%
!! CAAAATAAAATTTATAAGTA+GGG + chr1_4:48472494-48472513 None:intergenic 10.0%
!! TCAAAATAAAATTTATAAGT+AGG + chr1_4:48472495-48472514 None:intergenic 10.0%
!!! GTAAAATCATATTTTATAAA+AGG - chr1_4:48473059-48473078 Msa0166870:intron 10.0%
!! TTCTTAGTTATAATTATAAG+CGG - chr1_4:48464078-48464097 Msa0166870:intron 15.0%
!!! TTCTATTTAATAATCTTTTG+AGG - chr1_4:48464266-48464285 Msa0166870:intron 15.0%
!!! TCTATTTAATAATCTTTTGA+GGG - chr1_4:48464267-48464286 Msa0166870:intron 15.0%
!! TGATTAATGTTAGAATAATA+TGG - chr1_4:48464425-48464444 Msa0166870:intron 15.0%
!!! TATCAAGTAAATATGAATTT+TGG - chr1_4:48464615-48464634 Msa0166870:intron 15.0%
!!! ATCAAGTAAATATGAATTTT+GGG - chr1_4:48464616-48464635 Msa0166870:intron 15.0%
!!! AAATCTAATTTTATGTTTAG+AGG + chr1_4:48465365-48465384 None:intergenic 15.0%
!! TAATTAAGTAAATTATCAAG+AGG - chr1_4:48465689-48465708 Msa0166870:intron 15.0%
!!! TTTATTTAGTTACTTTTACT+TGG - chr1_4:48467321-48467340 Msa0166870:intron 15.0%
!! AAAACATATTTATAATTGGT+GGG - chr1_4:48468145-48468164 Msa0166870:intron 15.0%
!! TAATTAACTCTTAGAATTTA+GGG + chr1_4:48468225-48468244 None:intergenic 15.0%
!! ATTAAATTTAATCTCAAATG+AGG + chr1_4:48468580-48468599 None:intergenic 15.0%
!! TTAACATCTAACATAAAATT+TGG + chr1_4:48469063-48469082 None:intergenic 15.0%
!!! AAAAGGTAAATGAATTTTAA+AGG + chr1_4:48469358-48469377 None:intergenic 15.0%
!!! ATATTTGTGGTTTTTTATTT+GGG - chr1_4:48469960-48469979 Msa0166870:intron 15.0%
!! TTATTCTTATCTAATAACTT+AGG + chr1_4:48470181-48470200 None:intergenic 15.0%
!! ATTAGATAAGAATAATTGAA+TGG - chr1_4:48470186-48470205 Msa0166870:intron 15.0%
!! ATTATAAAAAATAAGTACCA+CGG + chr1_4:48470437-48470456 None:intergenic 15.0%
!! AATATAGAAGAGAAATTAAA+TGG + chr1_4:48470586-48470605 None:intergenic 15.0%
!!! AATTTTTTTGATTCATTCTA+CGG + chr1_4:48470664-48470683 None:intergenic 15.0%
!!! AATTGATTTTGAAAATATTC+AGG - chr1_4:48471890-48471909 Msa0166870:intron 15.0%
!! AAAAAATAAAATAATCGCAA+AGG + chr1_4:48471923-48471942 None:intergenic 15.0%
!!! AATTTTTTTAAACAACTGAT+GGG - chr1_4:48472169-48472188 Msa0166870:intron 15.0%
!! TTTACATAAATAATTCCATT+TGG - chr1_4:48472262-48472281 Msa0166870:intron 15.0%
!! TTACATAAATAATTCCATTT+GGG - chr1_4:48472263-48472282 Msa0166870:intron 15.0%
!! AAATAAAATTTATAAGTAGG+GGG + chr1_4:48472492-48472511 None:intergenic 15.0%
!!! TTTTGTTAAATGTTTTGTTT+AGG + chr1_4:48473417-48473436 None:intergenic 15.0%
!!! TTTTATGGTTAAATTAACTT+GGG - chr1_4:48473878-48473897 Msa0166870:intron 15.0%
!!! TAAGCATCTATATTTTTATT+TGG - chr1_4:48473939-48473958 Msa0166870:intron 15.0%
!! TTTCAGTTATTATAAAAAAG+AGG - chr1_4:48474290-48474309 Msa0166870:intron 15.0%
!! TTCAGTTATTATAAAAAAGA+GGG - chr1_4:48474291-48474310 Msa0166870:intron 15.0%
!! GATAAATTACAAAACTTATT+TGG - chr1_4:48474601-48474620 Msa0166870:intron 15.0%
!! AACAACAATTTATCACAAAA+AGG + chr1_4:48461417-48461436 None:intergenic 20.0%
!! ATGATAAATTCTTGTGTAAT+TGG - chr1_4:48461491-48461510 Msa0166870:CDS 20.0%
!!! TTTGATTTTTTTGAAAGAAG+TGG - chr1_4:48461593-48461612 Msa0166870:intron 20.0%
!!! TTTTGAATATATCGTAAGTA+GGG - chr1_4:48461950-48461969 Msa0166870:intron 20.0%
!! TAAAGATGTTCATAAGATAT+AGG - chr1_4:48462409-48462428 Msa0166870:intron 20.0%
!!! TGTGCTTAATATTTTTTAGA+GGG - chr1_4:48462791-48462810 Msa0166870:intron 20.0%
!! CATATAAACAAATCATCATT+AGG + chr1_4:48462842-48462861 None:intergenic 20.0%
!!! GTACTATATTGTTTTTACTA+AGG - chr1_4:48463612-48463631 Msa0166870:CDS 20.0%
!! TCATGTATACATATGATATA+TGG + chr1_4:48463658-48463677 None:intergenic 20.0%
!!! GAAGTTTAAAATAATTCAGT+AGG - chr1_4:48463962-48463981 Msa0166870:intron 20.0%
!!! AAGCAGCATTTTTTATTAAA+AGG - chr1_4:48464030-48464049 Msa0166870:intron 20.0%
!!! AGCATTTTTTATTAAAAGGA+AGG - chr1_4:48464034-48464053 Msa0166870:intron 20.0%
!!! ATATTAAAAGGAATGGTTTT+TGG - chr1_4:48464180-48464199 Msa0166870:intron 20.0%
!! TCATGAAATATAAGGAATTA+TGG + chr1_4:48464514-48464533 None:intergenic 20.0%
!!! TCAAGTAAATATGAATTTTG+GGG - chr1_4:48464617-48464636 Msa0166870:intron 20.0%
!! TTGAATATATCCTAACTATT+GGG + chr1_4:48465026-48465045 None:intergenic 20.0%
!! TTTGAATATATCCTAACTAT+TGG + chr1_4:48465027-48465046 None:intergenic 20.0%
!! GATATATTCAAATTTCAATG+AGG - chr1_4:48465035-48465054 Msa0166870:intron 20.0%
!! ATATGTCAGTTAGATAAATA+GGG - chr1_4:48465098-48465117 Msa0166870:intron 20.0%
!! AATTTGATGTTTGTGTAAAA+GGG - chr1_4:48465150-48465169 Msa0166870:intron 20.0%
!! AAAGATTGGAATTGAAAAAT+AGG + chr1_4:48465297-48465316 None:intergenic 20.0%
!! CATAAATTAATTACCATGTT+AGG + chr1_4:48465422-48465441 None:intergenic 20.0%
!! TAAATATTCAGATTAATGCA+AGG + chr1_4:48465481-48465500 None:intergenic 20.0%
!! TTGCATTAATCTGAATATTT+AGG - chr1_4:48465480-48465499 Msa0166870:intron 20.0%
!! ATGAAGTGCAAAAAAAAAAT+TGG + chr1_4:48465856-48465875 None:intergenic 20.0%
!! AATTGAAACACATTCATTAT+AGG - chr1_4:48466525-48466544 Msa0166870:CDS 20.0%
!! ATTGAAACACATTCATTATA+GGG - chr1_4:48466526-48466545 Msa0166870:CDS 20.0%
!!! TTCTTTTCAAATGCAATTTT+AGG - chr1_4:48466771-48466790 Msa0166870:intron 20.0%
!!! TTACACTGTTAAATTTTTCA+GGG - chr1_4:48467042-48467061 Msa0166870:intron 20.0%
!! TCTCTATATATAAAACAATG+TGG - chr1_4:48467668-48467687 Msa0166870:intron 20.0%
!!! GTAATTTTAGAATTTGTGTT+CGG - chr1_4:48467711-48467730 Msa0166870:intron 20.0%
!!! CCAATTATAAATATGTTTTC+AGG + chr1_4:48468144-48468163 None:intergenic 20.0%
!! CCTGAAAACATATTTATAAT+TGG - chr1_4:48468141-48468160 Msa0166870:intron 20.0%
!! GAAAACATATTTATAATTGG+TGG - chr1_4:48468144-48468163 Msa0166870:intron 20.0%
!! GTAATTAACTCTTAGAATTT+AGG + chr1_4:48468226-48468245 None:intergenic 20.0%
!!! TAATGCTTAAAAAGTATGTA+TGG + chr1_4:48468365-48468384 None:intergenic 20.0%
!!! TACATACTTTTTAAGCATTA+AGG - chr1_4:48468365-48468384 Msa0166870:intron 20.0%
!! ATTATTTGTTTATACAACAG+AGG + chr1_4:48468542-48468561 None:intergenic 20.0%
!!! TATATGCATTATGATTTTAG+TGG - chr1_4:48468748-48468767 Msa0166870:intron 20.0%
!! AAGTGGTACATAAAATAATT+AGG + chr1_4:48469306-48469325 None:intergenic 20.0%
!!! AATGAATTTTAAAGGAATAG+TGG + chr1_4:48469350-48469369 None:intergenic 20.0%
!! CTATAATTAAGTTCTTGAAA+AGG + chr1_4:48469375-48469394 None:intergenic 20.0%
!! GCTTAACTATTTAAAAAGTT+GGG + chr1_4:48469571-48469590 None:intergenic 20.0%
!! GCAATAAAACATTTATCATA+AGG + chr1_4:48469593-48469612 None:intergenic 20.0%
!!! GATAAATGTTTTATTGCATT+TGG - chr1_4:48469596-48469615 Msa0166870:CDS 20.0%
!! CAAATAAAAAACCACAAATA+TGG + chr1_4:48469961-48469980 None:intergenic 20.0%
!!! CATATTTGTGGTTTTTTATT+TGG - chr1_4:48469959-48469978 Msa0166870:intron 20.0%
!! AAAAATTATCTAAGAGAAAC+TGG - chr1_4:48470677-48470696 Msa0166870:intron 20.0%
!! AAAATTATCTAAGAGAAACT+GGG - chr1_4:48470678-48470697 Msa0166870:intron 20.0%
!! TTATTCAACCATTTCAATTA+GGG + chr1_4:48470846-48470865 None:intergenic 20.0%
!! ATTATTCAACCATTTCAATT+AGG + chr1_4:48470847-48470866 None:intergenic 20.0%
!!! TTGAAATGGTTGAATAATTT+TGG - chr1_4:48470849-48470868 Msa0166870:intron 20.0%
!! TAAGTATAGTAAATCTTTAG+TGG + chr1_4:48472097-48472116 None:intergenic 20.0%
!!! GAATTTTTTTAAACAACTGA+TGG - chr1_4:48472168-48472187 Msa0166870:intron 20.0%
!! TACATAAATAATTCCATTTG+GGG - chr1_4:48472264-48472283 Msa0166870:intron 20.0%
!! TTTGCAATATGATAAAAACA+AGG + chr1_4:48472298-48472317 None:intergenic 20.0%
!! TTCTGTTTAAAAATATGTTC+CGG + chr1_4:48472818-48472837 None:intergenic 20.0%
!!! TAAACATGTTGATTTTAAGA+TGG - chr1_4:48473143-48473162 Msa0166870:intron 20.0%
!!! GTTCAGTTTTTAATTAATTG+TGG + chr1_4:48473344-48473363 None:intergenic 20.0%
!!! CTTTTATGGTTAAATTAACT+TGG - chr1_4:48473877-48473896 Msa0166870:intron 20.0%
!!! CATAAGTCATTTTTATGAAT+TGG + chr1_4:48473966-48473985 None:intergenic 20.0%
!! CAATTCATAAAAATGACTTA+TGG - chr1_4:48473964-48473983 Msa0166870:intron 20.0%
!! CTTATTCAATAAACTATACT+AGG + chr1_4:48474066-48474085 None:intergenic 20.0%
!! TAGAATATAACACTAAGATA+AGG - chr1_4:48474146-48474165 Msa0166870:intron 20.0%
!! AAGTTAATTAAGAGTTGTTT+AGG - chr1_4:48474391-48474410 Msa0166870:intron 20.0%
!!! AACTTCTTTATCTTGAATTT+TGG - chr1_4:48474553-48474572 Msa0166870:intron 20.0%
!!! ACTTCTTTATCTTGAATTTT+GGG - chr1_4:48474554-48474573 Msa0166870:intron 20.0%
!!! AAGTTTACATTTTTGCTGTT+AGG + chr1_4:48461391-48461410 None:intergenic 25.0%
! TTGATCATGTTTATATACTG+TGG - chr1_4:48461436-48461455 Msa0166870:CDS 25.0%
!!! TATGAAACTATGGTTTTGTT+TGG - chr1_4:48461645-48461664 Msa0166870:intron 25.0%
!! CTTTTGAATATATCGTAAGT+AGG - chr1_4:48461949-48461968 Msa0166870:intron 25.0%
!!! GCTTTTTTCTTAAATAGAGA+AGG - chr1_4:48462030-48462049 Msa0166870:intron 25.0%
!! TAAAGCCTATTTAGCTTAAA+AGG - chr1_4:48462066-48462085 Msa0166870:intron 25.0%
!! ATAATCAACACGAGATTTTA+GGG + chr1_4:48462319-48462338 None:intergenic 25.0%
! CAATGTGATCTAAGTTTAAA+TGG + chr1_4:48462383-48462402 None:intergenic 25.0%
!! TAAGATATAGGCTTTTAAAC+AGG - chr1_4:48462421-48462440 Msa0166870:intron 25.0%
!!! TTTTTTTTGAGAGATACCTT+AGG + chr1_4:48462616-48462635 None:intergenic 25.0%
! TTATGTATGTTAGATTTGTG+TGG - chr1_4:48462738-48462757 Msa0166870:intron 25.0%
!!! GTGTGCTTAATATTTTTTAG+AGG - chr1_4:48462790-48462809 Msa0166870:intron 25.0%
!!! GTGCTTAATATTTTTTAGAG+GGG - chr1_4:48462792-48462811 Msa0166870:intron 25.0%
!!! TGTTTTAATTGCGTAATAAC+TGG - chr1_4:48462860-48462879 Msa0166870:intron 25.0%
! ATTCAAGAATATGACAAAAC+TGG + chr1_4:48463084-48463103 None:intergenic 25.0%
!!! AACTTATTTCCATTTCTAGT+TGG - chr1_4:48463121-48463140 Msa0166870:intron 25.0%
! TGAGATTACTAATTATGTTG+AGG - chr1_4:48463427-48463446 Msa0166870:intron 25.0%
!! GTTTTTACTAAGGATTGAAT+TGG - chr1_4:48463622-48463641 Msa0166870:CDS 25.0%
!! ACTTTTGCTTTACTTATACT+TGG - chr1_4:48463707-48463726 Msa0166870:intron 25.0%
!! CTTTTGCTTTACTTATACTT+GGG - chr1_4:48463708-48463727 Msa0166870:intron 25.0%
! TATCATCAATCTTAGACATT+TGG + chr1_4:48463751-48463770 None:intergenic 25.0%
! AAACATTTCAAATACCTGTA+AGG + chr1_4:48463901-48463920 None:intergenic 25.0%
! AAACTTCATAATAACTGAAG+TGG + chr1_4:48463949-48463968 None:intergenic 25.0%
! ATCTTGATTATCATAAAACG+TGG - chr1_4:48463995-48464014 Msa0166870:intron 25.0%
! TCTTGATTATCATAAAACGT+GGG - chr1_4:48463996-48464015 Msa0166870:intron 25.0%
! ATAAGCGGTAGTATTATATA+TGG - chr1_4:48464093-48464112 Msa0166870:intron 25.0%
!! AAATCTTTGAAGGATCAAAT+TGG + chr1_4:48464134-48464153 None:intergenic 25.0%
! ATGTTCGAAAAAATCTTTGA+AGG + chr1_4:48464144-48464163 None:intergenic 25.0%
! TTGACCATGGAAATATTAAA+AGG - chr1_4:48464168-48464187 Msa0166870:intron 25.0%
!! CATTCCTTTTAATATTTCCA+TGG + chr1_4:48464175-48464194 None:intergenic 25.0%
! CATGGAAATATTAAAAGGAA+TGG - chr1_4:48464173-48464192 Msa0166870:intron 25.0%
! AACAAATATTACTGCATACA+GGG + chr1_4:48464229-48464248 None:intergenic 25.0%
! TAACAAATATTACTGCATAC+AGG + chr1_4:48464230-48464249 None:intergenic 25.0%
!! AAATCTTTCGAGTATCTAAA+TGG - chr1_4:48464308-48464327 Msa0166870:intron 25.0%
!! AATCTTTCGAGTATCTAAAT+GGG - chr1_4:48464309-48464328 Msa0166870:intron 25.0%
! GTTTACCATAAAGTTATAGT+GGG - chr1_4:48464332-48464351 Msa0166870:intron 25.0%
! TTTACCATAAAGTTATAGTG+GGG - chr1_4:48464333-48464352 Msa0166870:intron 25.0%
!! ATTTTCGTATCTTGAAACAA+AGG - chr1_4:48464468-48464487 Msa0166870:intron 25.0%
! AGTCCAGTTAAAGTATAAAT+AGG - chr1_4:48464563-48464582 Msa0166870:intron 25.0%
! GTCCAGTTAAAGTATAAATA+GGG - chr1_4:48464564-48464583 Msa0166870:intron 25.0%
! ATCCCTATTTATACTTTAAC+TGG + chr1_4:48464569-48464588 None:intergenic 25.0%
! GTTAAAGTATAAATAGGGAT+TGG - chr1_4:48464569-48464588 Msa0166870:intron 25.0%
! ATGTTTGGATGAAAAGAAAA+GGG - chr1_4:48464665-48464684 Msa0166870:CDS 25.0%
!! TAGTTAGTTAGTGTTGAAAT+TGG - chr1_4:48464702-48464721 Msa0166870:CDS 25.0%
!! AGTTAGTTAGTGTTGAAATT+GGG - chr1_4:48464703-48464722 Msa0166870:intron 25.0%
! GTAGATAAGAGTTTATAAAG+AGG + chr1_4:48464775-48464794 None:intergenic 25.0%
! CTTGATAAGAGTTTATAAAG+AGG + chr1_4:48464969-48464988 None:intergenic 25.0%
! CATATGTCAGTTAGATAAAT+AGG - chr1_4:48465097-48465116 Msa0166870:intron 25.0%
! TATGTCAGTTAGATAAATAG+GGG - chr1_4:48465099-48465118 Msa0166870:intron 25.0%
! ATAAATAGGGGAAATAAAGA+TGG - chr1_4:48465111-48465130 Msa0166870:intron 25.0%
! GAATTTGATGTTTGTGTAAA+AGG - chr1_4:48465149-48465168 Msa0166870:intron 25.0%
! ATTTGATGTTTGTGTAAAAG+GGG - chr1_4:48465151-48465170 Msa0166870:intron 25.0%
! AAATAGGATGAAAGATAGAA+AGG + chr1_4:48465281-48465300 None:intergenic 25.0%
! TTTATGATGAATTCCTAACA+TGG - chr1_4:48465406-48465425 Msa0166870:intron 25.0%
! ATCTGAATATTTAGGCAAAT+AGG - chr1_4:48465488-48465507 Msa0166870:intron 25.0%
! TAAATTATCAAGAGGAGTTA+TGG - chr1_4:48465697-48465716 Msa0166870:intron 25.0%
!!! TTTTAAAAATTAGTCCGAAC+TGG - chr1_4:48465738-48465757 Msa0166870:intron 25.0%
! AATTCTCTGCATAAATATCA+GGG + chr1_4:48465995-48466014 None:intergenic 25.0%
! AAATTCTCTGCATAAATATC+AGG + chr1_4:48465996-48466015 None:intergenic 25.0%
!!! CTTATTGGCTCATATAAATT+TGG - chr1_4:48466035-48466054 Msa0166870:intron 25.0%
! AATCACAAAAAGTTAAACCT+TGG + chr1_4:48466305-48466324 None:intergenic 25.0%
! AAAGAATCGACAAAAATGAA+TGG + chr1_4:48466341-48466360 None:intergenic 25.0%
!! CTTTGTCTAAGATATATGTT+TGG - chr1_4:48466357-48466376 Msa0166870:intron 25.0%
!! TATCATCATTTAGTTCATTC+TGG + chr1_4:48466584-48466603 None:intergenic 25.0%
! ATTGGACAGATATAAATCAT+TGG - chr1_4:48466668-48466687 Msa0166870:intron 25.0%
! TTAACAGTGTAAGAAATGAA+GGG + chr1_4:48467034-48467053 None:intergenic 25.0%
! TTTAACAGTGTAAGAAATGA+AGG + chr1_4:48467035-48467054 None:intergenic 25.0%
!! CTTACACTGTTAAATTTTTC+AGG - chr1_4:48467041-48467060 Msa0166870:intron 25.0%
!! TTCAGCTTTATCTAAAGAAA+TGG - chr1_4:48467100-48467119 Msa0166870:intron 25.0%
!! TCAGCTTTATCTAAAGAAAT+GGG - chr1_4:48467101-48467120 Msa0166870:intron 25.0%
! TAAAAGACTTATCACTAAGT+AGG + chr1_4:48467264-48467283 None:intergenic 25.0%
! ACTATGCAGCATATATTTAT+TGG + chr1_4:48467473-48467492 None:intergenic 25.0%
! TTATATATAGAGACTACATC+AGG + chr1_4:48467661-48467680 None:intergenic 25.0%
! CTAATACCATCTTAGAATTT+GGG + chr1_4:48468016-48468035 None:intergenic 25.0%
! TCTAATACCATCTTAGAATT+TGG + chr1_4:48468017-48468036 None:intergenic 25.0%
! CTAAGAGTTAATTACTAAAC+TGG - chr1_4:48468231-48468250 Msa0166870:intron 25.0%
! TGAAGTCATTAAATTCAAAG+AGG + chr1_4:48468278-48468297 None:intergenic 25.0%
! AATATACTCCAAGAGTTTAT+AGG - chr1_4:48468315-48468334 Msa0166870:intron 25.0%
! CATATAATGTTTGAGAATCA+TGG + chr1_4:48468734-48468753 None:intergenic 25.0%
! TTAGTTATAGACAATCTTGA+AGG + chr1_4:48468774-48468793 None:intergenic 25.0%
! AACAAAACATCTTAATGAGT+TGG + chr1_4:48468804-48468823 None:intergenic 25.0%
!!! GAATTTGTTTTGGATATGTA+TGG - chr1_4:48468861-48468880 Msa0166870:intron 25.0%
!! TTGTTATTCTATGTTGTGTT+TGG - chr1_4:48468968-48468987 Msa0166870:intron 25.0%
! TGTTATTCTATGTTGTGTTT+GGG - chr1_4:48468969-48468988 Msa0166870:intron 25.0%
! CTTACTACAGCAAATTAATT+CGG + chr1_4:48469002-48469021 None:intergenic 25.0%
!! TCTCTACATATTTTCATTGA+TGG - chr1_4:48469543-48469562 Msa0166870:intron 25.0%
! GGCTTAACTATTTAAAAAGT+TGG + chr1_4:48469572-48469591 None:intergenic 25.0%
!! AAAAATGCTTTAGATGAACA+TGG - chr1_4:48469726-48469745 Msa0166870:intron 25.0%
! AAAAGATTATGTAGAGTTCA+AGG - chr1_4:48470024-48470043 Msa0166870:CDS 25.0%
!! TAGTTTTTATCACAGAATGA+CGG - chr1_4:48470121-48470140 Msa0166870:CDS 25.0%
! TATCTAATAACTTAGGCTTT+GGG + chr1_4:48470174-48470193 None:intergenic 25.0%
! TTATCTAATAACTTAGGCTT+TGG + chr1_4:48470175-48470194 None:intergenic 25.0%
! TGTGTTTAAACAATTGTTAC+AGG + chr1_4:48470782-48470801 None:intergenic 25.0%
! ACTTGAAGAATTGAAAAAGA+AGG - chr1_4:48470810-48470829 Msa0166870:intron 25.0%
! ATCCGTTAATATTAATCCAA+GGG - chr1_4:48471064-48471083 Msa0166870:intron 25.0%
! AACCCTTGGATTAATATTAA+CGG + chr1_4:48471069-48471088 None:intergenic 25.0%
! TGCTAAAAAACGAAAAAACA+TGG + chr1_4:48471240-48471259 None:intergenic 25.0%
!!! CAGATTTTTTCTGAATAGTA+GGG + chr1_4:48471376-48471395 None:intergenic 25.0%
! TATAAACAGTTGTTAGTTGA+CGG - chr1_4:48471498-48471517 Msa0166870:intron 25.0%
! AGCATTAATTTATCATCAAC+TGG + chr1_4:48471768-48471787 None:intergenic 25.0%
! ACAATTAAAAGTTAGTTGCA+AGG - chr1_4:48472030-48472049 Msa0166870:intron 25.0%
! ATAGTAAATCTTTAGTGGTT+TGG + chr1_4:48472092-48472111 None:intergenic 25.0%
! GATTGTAAATAGTGAAAAAC+AGG - chr1_4:48472444-48472463 Msa0166870:CDS 25.0%
! AAACAGAAATATTCACATCA+AGG - chr1_4:48472830-48472849 Msa0166870:CDS 25.0%
! AACAGAGAGAAAATTTAGTT+TGG - chr1_4:48473119-48473138 Msa0166870:CDS 25.0%
! CTTTAATTCATGTAACTGTT+CGG - chr1_4:48473250-48473269 Msa0166870:CDS 25.0%
! TACGAAACGATGTAAAATAT+AGG + chr1_4:48473299-48473318 None:intergenic 25.0%
! TAACTAACACCCAATAAAAA+TGG - chr1_4:48473384-48473403 Msa0166870:intron 25.0%
! ATTCAATAAACTATACTAGG+AGG + chr1_4:48474063-48474082 None:intergenic 25.0%
! GCAATAGTTGCAATATTTAT+TGG - chr1_4:48474202-48474221 Msa0166870:intron 25.0%
! TGCAATATTTATTGGAATCT+AGG - chr1_4:48474210-48474229 Msa0166870:intron 25.0%
! AGTTTCAGTTATTAAAGAGA+GGG - chr1_4:48474236-48474255 Msa0166870:intron 25.0%
! AGTTTCAGTTATAAAAGAGA+GGG - chr1_4:48474343-48474362 Msa0166870:intron 25.0%
! TTCCAATAAATATTACAGCT+CGG - chr1_4:48474437-48474456 Msa0166870:intron 25.0%
! GAAATGGAAATAATAAACCA+GGG + chr1_4:48474479-48474498 None:intergenic 25.0%
! TGAAATGGAAATAATAAACC+AGG + chr1_4:48474480-48474499 None:intergenic 25.0%
!! CTTCTTTATCTTGAATTTTG+GGG - chr1_4:48474555-48474574 Msa0166870:intron 25.0%
!!! TCTATCAGATTGTTTTGAAA+TGG - chr1_4:48474579-48474598 Msa0166870:intron 25.0%
!! AACTTATTTGGCATATTTTC+TGG - chr1_4:48474613-48474632 Msa0166870:intron 25.0%
!! ACTTATTTGGCATATTTTCT+GGG - chr1_4:48474614-48474633 Msa0166870:intron 25.0%
! TCAAGATTTCTTTGTATACA+TGG + chr1_4:48474785-48474804 None:intergenic 25.0%
! CAAACAAACAACATTGAAAA+AGG + chr1_4:48474934-48474953 None:intergenic 25.0%
!! TCCAATAAGCAATCAATTTT+CGG - chr1_4:48474986-48475005 Msa0166870:exon 25.0%
!! AATTTTCGGATTGTAGATAT+TGG - chr1_4:48475000-48475019 Msa0166870:five_prime_UTR 25.0%
!! ATTTTCGGATTGTAGATATT+GGG - chr1_4:48475001-48475020 Msa0166870:five_prime_UTR 25.0%
!!! ACTTGTTTTGTGTATGATAT+TGG - chr1_4:48475033-48475052 Msa0166870:five_prime_UTR 25.0%
TTCTGCGAATTTGAAGAAAA+AGG + chr1_4:48461267-48461286 None:intergenic 30.0%
!!! ATTGGATTTTTAGAGCTGAT+TGG - chr1_4:48461509-48461528 Msa0166870:CDS 30.0%
!! GTTCATACTGAGTTGAATTT+TGG - chr1_4:48461563-48461582 Msa0166870:intron 30.0%
GATAAGAACTTAATGAAGCA+CGG + chr1_4:48461850-48461869 None:intergenic 30.0%
ATATCCAGCTTATGAAAGTT+AGG - chr1_4:48461917-48461936 Msa0166870:intron 30.0%
AATATATCGTAAGTAGGGAT+GGG - chr1_4:48461955-48461974 Msa0166870:intron 30.0%
CTCTATTTAAGAAAAAAGCC+TGG + chr1_4:48462029-48462048 None:intergenic 30.0%
!! ATAGGCTTTAAAAAAAGCCT+AGG + chr1_4:48462056-48462075 None:intergenic 30.0%
! GATAATCAACACGAGATTTT+AGG + chr1_4:48462320-48462339 None:intergenic 30.0%
!! GCTTAGGCTTTAGAAAAATA+TGG - chr1_4:48462519-48462538 Msa0166870:CDS 30.0%
GATTTGTGTGGTAAAGATTT+CGG - chr1_4:48462750-48462769 Msa0166870:intron 30.0%
ATTTGTGTGGTAAAGATTTC+GGG - chr1_4:48462751-48462770 Msa0166870:intron 30.0%
TATCATCAACCAACTAGAAA+TGG + chr1_4:48463133-48463152 None:intergenic 30.0%
!! TTTCTAGTTGGTTGATGATA+TGG - chr1_4:48463133-48463152 Msa0166870:intron 30.0%
! CAAAGATTCTTTGGAAACTT+TGG - chr1_4:48463184-48463203 Msa0166870:intron 30.0%
! ACTGACTTTACTTTCTTTCT+AGG - chr1_4:48463323-48463342 Msa0166870:intron 30.0%
AATCCAGAAAGATTCTATTG+AGG - chr1_4:48463391-48463410 Msa0166870:intron 30.0%
ATCCAGAAAGATTCTATTGA+GGG - chr1_4:48463392-48463411 Msa0166870:intron 30.0%
ATGGAAAGAATTGAGGATAT+AGG - chr1_4:48463521-48463540 Msa0166870:CDS 30.0%
CATATGTATTATACCTTCTG+TGG + chr1_4:48463570-48463589 None:intergenic 30.0%
! GATTGATGATATGACGAAAA+AGG - chr1_4:48463760-48463779 Msa0166870:intron 30.0%
AATCACTTCACGAAAATTGT+CGG + chr1_4:48463789-48463808 None:intergenic 30.0%
!!! CATAAAACGTGGGTTTTAAA+TGG - chr1_4:48464006-48464025 Msa0166870:intron 30.0%
ACAAATATTACTGCATACAG+GGG + chr1_4:48464228-48464247 None:intergenic 30.0%
! ATCTTTCGAGTATCTAAATG+GGG - chr1_4:48464310-48464329 Msa0166870:intron 30.0%
GGTTTACCATAAAGTTATAG+TGG - chr1_4:48464331-48464350 Msa0166870:intron 30.0%
GGAATGGATCATGAAATATA+AGG + chr1_4:48464522-48464541 None:intergenic 30.0%
! CTTTTCTTTTCATCCAAACA+TGG + chr1_4:48464666-48464685 None:intergenic 30.0%
CATGTTTGGATGAAAAGAAA+AGG - chr1_4:48464664-48464683 Msa0166870:CDS 30.0%
! GTTAGTTAGTGTTGAAATTG+GGG - chr1_4:48464704-48464723 Msa0166870:intron 30.0%
GATAAGAGTTTATAAAGAGG+AGG + chr1_4:48464772-48464791 None:intergenic 30.0%
TCTGATACCATGTTGATATT+AGG - chr1_4:48464897-48464916 Msa0166870:intron 30.0%
CTGATACCATGTTGATATTA+GGG - chr1_4:48464898-48464917 Msa0166870:intron 30.0%
ATATGAACAGTTAGAGAAGT+TGG - chr1_4:48465062-48465081 Msa0166870:intron 30.0%
! AGTTAGAGAAGTTGGTTAAT+TGG - chr1_4:48465070-48465089 Msa0166870:intron 30.0%
AAGATGGAAAAGTTCATTCA+AGG - chr1_4:48465127-48465146 Msa0166870:intron 30.0%
TTCAGATTAATGCAAGGTAT+TGG + chr1_4:48465475-48465494 None:intergenic 30.0%
!! TTTATCTGCTTTTCGATGAA+TGG - chr1_4:48465540-48465559 Msa0166870:intron 30.0%
! ATTACAATTTTCTCCCTACT+CGG + chr1_4:48465649-48465668 None:intergenic 30.0%
AAGAGGAGTTATGGTTAATT+AGG - chr1_4:48465706-48465725 Msa0166870:intron 30.0%
AAACTAACAGGCAAATTGTT+AGG + chr1_4:48465789-48465808 None:intergenic 30.0%
AAAAAATTGGTTGAACCAAC+CGG + chr1_4:48465843-48465862 None:intergenic 30.0%
! TACGATTCTGAAGATCTTAT+TGG - chr1_4:48466020-48466039 Msa0166870:intron 30.0%
GCTCATATAAATTTGGTTGA+TGG - chr1_4:48466042-48466061 Msa0166870:intron 30.0%
AAAGAAATTCCAAGAACTTC+AGG - chr1_4:48466454-48466473 Msa0166870:CDS 30.0%
! CACGAAAAGATACTTTTACA+TGG + chr1_4:48466554-48466573 None:intergenic 30.0%
CAAATGATCAACTTCAACAT+TGG - chr1_4:48466637-48466656 Msa0166870:intron 30.0%
! TTTCAAATGCAATTTTAGGC+TGG - chr1_4:48466775-48466794 Msa0166870:intron 30.0%
GAATGATCTTGAAATTACGA+TGG - chr1_4:48466936-48466955 Msa0166870:intron 30.0%
ATATTTGCAGTGTGTATGTT+TGG - chr1_4:48467006-48467025 Msa0166870:intron 30.0%
! CAGCTTTATCTAAAGAAATG+GGG - chr1_4:48467102-48467121 Msa0166870:intron 30.0%
! CTTTTACTTGGTATAGAAGT+TGG - chr1_4:48467333-48467352 Msa0166870:intron 30.0%
ATGATTCACTCAAATGTTAG+CGG - chr1_4:48467406-48467425 Msa0166870:CDS 30.0%
!! AGTTCTAAGCTGTTTCAATA+AGG - chr1_4:48467490-48467509 Msa0166870:intron 30.0%
CTGTGTGCATGTTAATTTAT+AGG - chr1_4:48467563-48467582 Msa0166870:intron 30.0%
TGAATGCGAAAATTCCAATT+TGG - chr1_4:48467589-48467608 Msa0166870:intron 30.0%
AAAAAGATAGTAAGAGTTGG+GGG + chr1_4:48467900-48467919 None:intergenic 30.0%
CAAAAAGATAGTAAGAGTTG+GGG + chr1_4:48467901-48467920 None:intergenic 30.0%
GCAAAAAGATAGTAAGAGTT+GGG + chr1_4:48467902-48467921 None:intergenic 30.0%
AGCAAAAAGATAGTAAGAGT+TGG + chr1_4:48467903-48467922 None:intergenic 30.0%
! AACTCTTACTATCTTTTTGC+TGG - chr1_4:48467902-48467921 Msa0166870:intron 30.0%
! ACTCTTACTATCTTTTTGCT+GGG - chr1_4:48467903-48467922 Msa0166870:intron 30.0%
! TATTAGAGTCTAAGATCTGT+TGG - chr1_4:48468030-48468049 Msa0166870:intron 30.0%
! ATTAGAGTCTAAGATCTGTT+GGG - chr1_4:48468031-48468050 Msa0166870:intron 30.0%
! TAACTCTTAGAATTTAGGGT+GGG + chr1_4:48468221-48468240 None:intergenic 30.0%
TTAACTCTTAGAATTTAGGG+TGG + chr1_4:48468222-48468241 None:intergenic 30.0%
! AATGAAGTCTACAAAAGCAT+TGG - chr1_4:48468465-48468484 Msa0166870:intron 30.0%
ACAAGCAAAACACATAACAA+AGG + chr1_4:48468692-48468711 None:intergenic 30.0%
! TTGAGAATCATGGAAAGTAT+AGG + chr1_4:48468724-48468743 None:intergenic 30.0%
GTTACAGATTGAAAAGTTAC+AGG - chr1_4:48468821-48468840 Msa0166870:intron 30.0%
! ACCTTTTCTGATAATCTTCT+AGG + chr1_4:48468887-48468906 None:intergenic 30.0%
!! AATCAGCGGATTTTAAACAT+GGG + chr1_4:48469208-48469227 None:intergenic 30.0%
TATTCTAATCTATTCTCCCT+TGG - chr1_4:48469455-48469474 Msa0166870:CDS 30.0%
ATGGTAATACATACTTCAAG+TGG - chr1_4:48469481-48469500 Msa0166870:intron 30.0%
TGGTAATACATACTTCAAGT+GGG - chr1_4:48469482-48469501 Msa0166870:intron 30.0%
! CCTTTCATTTTCATCAAACT+GGG + chr1_4:48469844-48469863 None:intergenic 30.0%
! ACCTTTCATTTTCATCAAAC+TGG + chr1_4:48469845-48469864 None:intergenic 30.0%
! GCATACTACTACATTGATTA+TGG - chr1_4:48469875-48469894 Msa0166870:CDS 30.0%
AATATGGAACTAAAAGGGAA+GGG + chr1_4:48469945-48469964 None:intergenic 30.0%
AAATATGGAACTAAAAGGGA+AGG + chr1_4:48469946-48469965 None:intergenic 30.0%
CCACAAATATGGAACTAAAA+GGG + chr1_4:48469950-48469969 None:intergenic 30.0%
ACCACAAATATGGAACTAAA+AGG + chr1_4:48469951-48469970 None:intergenic 30.0%
! TTATTTGGGAGTGAATTTTC+TGG - chr1_4:48469974-48469993 Msa0166870:intron 30.0%
! AAAGAGAAGACTGCAATTTT+CGG + chr1_4:48470555-48470574 None:intergenic 30.0%
AGTTGAATCCCTAATTGAAA+TGG - chr1_4:48470835-48470854 Msa0166870:intron 30.0%
! AAGAATGATAGTGTACAACA+AGG - chr1_4:48471017-48471036 Msa0166870:intron 30.0%
GATCCGTTAATATTAATCCA+AGG - chr1_4:48471063-48471082 Msa0166870:intron 30.0%
! TTTTATTGTGAGAGATGAGA+GGG + chr1_4:48471101-48471120 None:intergenic 30.0%
! TATTGATTGCCTTCATATGA+AGG - chr1_4:48471281-48471300 Msa0166870:intron 30.0%
TGCATCAACATATTGATAAG+CGG + chr1_4:48471331-48471350 None:intergenic 30.0%
ATAGTAGGGCATATAAAACA+TGG + chr1_4:48471362-48471381 None:intergenic 30.0%
!!! CCAGATTTTTTCTGAATAGT+AGG + chr1_4:48471377-48471396 None:intergenic 30.0%
CCTACTATTCAGAAAAAATC+TGG - chr1_4:48471374-48471393 Msa0166870:intron 30.0%
TGAGGCTATTAAAGTTAAAG+AGG - chr1_4:48471404-48471423 Msa0166870:intron 30.0%
TATTAAAGTTAAAGAGGCTG+AGG - chr1_4:48471410-48471429 Msa0166870:intron 30.0%
! AACCTATATATCTGAAATCG+AGG - chr1_4:48471437-48471456 Msa0166870:intron 30.0%
AACCTCGATTTCAGATATAT+AGG + chr1_4:48471442-48471461 None:intergenic 30.0%
ATAAACAGTTGTTAGTTGAC+GGG - chr1_4:48471499-48471518 Msa0166870:intron 30.0%
AAAGTAGCATTTACAACTAC+TGG + chr1_4:48471674-48471693 None:intergenic 30.0%
ATGTTGATATGTTGAAGAAC+TGG - chr1_4:48471858-48471877 Msa0166870:intron 30.0%
!! CTGTTTTCAAGATTTAGCAT+TGG + chr1_4:48472059-48472078 None:intergenic 30.0%
! AAAGTTGATTCTAGCAGATA+TGG + chr1_4:48472195-48472214 None:intergenic 30.0%
AATTAAATTATCAGCCAAGC+TGG + chr1_4:48472221-48472240 None:intergenic 30.0%
TTCATCTTGAGTACATTTAG+CGG + chr1_4:48472600-48472619 None:intergenic 30.0%
AATCGATGAATTAGCGATAT+TGG - chr1_4:48472940-48472959 Msa0166870:intron 30.0%
! ATGAATTAGCGATATTGGTT+CGG - chr1_4:48472945-48472964 Msa0166870:intron 30.0%
TTGAACAACAAAATAGTTGC+TGG - chr1_4:48473200-48473219 Msa0166870:intron 30.0%
AAGAGATATCTCTCAAAAGA+TGG + chr1_4:48473445-48473464 None:intergenic 30.0%
GTGTTAATGTTATGCATTGA+TGG - chr1_4:48473576-48473595 Msa0166870:intron 30.0%
ATAAAAGCAAGAACTGTTGT+TGG + chr1_4:48473864-48473883 None:intergenic 30.0%
!! AACAACAGTTCTTGCTTTTA+TGG - chr1_4:48473863-48473882 Msa0166870:intron 30.0%
! TATGGTTAAATTAACTTGGG+AGG - chr1_4:48473881-48473900 Msa0166870:intron 30.0%
! ATGGTTAAATTAACTTGGGA+GGG - chr1_4:48473882-48473901 Msa0166870:intron 30.0%
! GCTGAAAACAACTTTTGAAT+AGG + chr1_4:48473990-48474009 None:intergenic 30.0%
GAGTTTCAGTTATTAAAGAG+AGG - chr1_4:48474235-48474254 Msa0166870:intron 30.0%
GAGTTTCAGTTATAAAAGAG+AGG - chr1_4:48474342-48474361 Msa0166870:intron 30.0%
TCCAATAAATATTACAGCTC+GGG - chr1_4:48474438-48474457 Msa0166870:intron 30.0%
CAATGGTGATAAAACTGAAA+TGG + chr1_4:48474495-48474514 None:intergenic 30.0%
! ATCTCTTTGAACTTTGAAGA+AGG - chr1_4:48474661-48474680 Msa0166870:intron 30.0%
AAACTCTTAGATAATGCTGT+TGG + chr1_4:48474710-48474729 None:intergenic 30.0%
!! CTTGTCTAAAAGTACTATCA+AGG + chr1_4:48474958-48474977 None:intergenic 30.0%
TCCGAAAATTGATTGCTTAT+TGG + chr1_4:48474990-48475009 None:intergenic 30.0%
! TTTTCGGATTGTAGATATTG+GGG - chr1_4:48475002-48475021 Msa0166870:five_prime_UTR 30.0%
!! GTTGAGTTGGAAAATGAAGA+AGG + chr1_4:48461199-48461218 None:intergenic 35.0%
ATTGTGAAACTGTGTTGAGT+TGG + chr1_4:48461212-48461231 None:intergenic 35.0%
! GTGGTCTGAATTTTCCATTT+GGG + chr1_4:48461290-48461309 None:intergenic 35.0%
!!! CATTTTTGCTGTTAGGAGAA+TGG + chr1_4:48461384-48461403 None:intergenic 35.0%
!!! TTTAGAGCTGATTGGTTTTG+TGG - chr1_4:48461517-48461536 Msa0166870:CDS 35.0%
!!! TTAGAGCTGATTGGTTTTGT+GGG - chr1_4:48461518-48461537 Msa0166870:CDS 35.0%
TTTGTGGGTATCTACTGAAT+TGG - chr1_4:48461533-48461552 Msa0166870:intron 35.0%
TTGTGGGTATCTACTGAATT+GGG - chr1_4:48461534-48461553 Msa0166870:intron 35.0%
GCTCACTAACTATGAAACTA+TGG - chr1_4:48461635-48461654 Msa0166870:intron 35.0%
TTCACCTAACTTTCATAAGC+TGG + chr1_4:48461924-48461943 None:intergenic 35.0%
GAATATATCGTAAGTAGGGA+TGG - chr1_4:48461954-48461973 Msa0166870:intron 35.0%
TTCTTAAATAGAGAAGGCCT+AGG - chr1_4:48462036-48462055 Msa0166870:intron 35.0%
AAAAGCCTCTTAAGCCTATT+AGG - chr1_4:48462108-48462127 Msa0166870:intron 35.0%
!!! ATTTTTCTAAAGCCTAAGCC+TGG + chr1_4:48462518-48462537 None:intergenic 35.0%
!! AGGCTTTAGAAAAATATGGC+AGG - chr1_4:48462523-48462542 Msa0166870:CDS 35.0%
AGGAAAACAGCTTACGATTA+GGG + chr1_4:48462596-48462615 None:intergenic 35.0%
TAGGAAAACAGCTTACGATT+AGG + chr1_4:48462597-48462616 None:intergenic 35.0%
!! AATCGTAAGCTGTTTTCCTA+AGG - chr1_4:48462597-48462616 Msa0166870:intron 35.0%
TTTGTGTGGTAAAGATTTCG+GGG - chr1_4:48462752-48462771 Msa0166870:intron 35.0%
TAATTGCAATCAACCAACAC+TGG - chr1_4:48463031-48463050 Msa0166870:intron 35.0%
AATTGCAATCAACCAACACT+GGG - chr1_4:48463032-48463051 Msa0166870:intron 35.0%
TTCTTGAATGATGTGCACAT+TGG - chr1_4:48463095-48463114 Msa0166870:intron 35.0%
CTACATAGAAGTAGATCATC+CGG + chr1_4:48463368-48463387 None:intergenic 35.0%
TTCCCTCAATAGAATCTTTC+TGG + chr1_4:48463397-48463416 None:intergenic 35.0%
TCTTTCCATCTGATCATCAA+CGG + chr1_4:48463510-48463529 None:intergenic 35.0%
TGATCAGATGGAAAGAATTG+AGG - chr1_4:48463514-48463533 Msa0166870:CDS 35.0%
AAGAATTGAGGATATAGGTC+AGG - chr1_4:48463526-48463545 Msa0166870:CDS 35.0%
! GATATAGGTCAGGTTTTACA+CGG - chr1_4:48463536-48463555 Msa0166870:CDS 35.0%
TGATGATATGACGAAAAAGG+AGG - chr1_4:48463763-48463782 Msa0166870:intron 35.0%
! TATACTCCTTGTGTTTTGCA+TGG + chr1_4:48463820-48463839 None:intergenic 35.0%
! AAACACAAGGAGTATACTGT+TGG - chr1_4:48463824-48463843 Msa0166870:CDS 35.0%
TTCGAACATCAATTTGACCA+TGG - chr1_4:48464155-48464174 Msa0166870:intron 35.0%
GTCACTACATGACATCAATT+TGG - chr1_4:48464202-48464221 Msa0166870:intron 35.0%
AATTGTACAGAGAACATCTC+TGG - chr1_4:48464371-48464390 Msa0166870:intron 35.0%
CTTAAGTCCTGATTAAACGA+GGG + chr1_4:48464543-48464562 None:intergenic 35.0%
TCTTAAGTCCTGATTAAACG+AGG + chr1_4:48464544-48464563 None:intergenic 35.0%
!!! CTCTTTTTTCTCTCCATGTT+TGG - chr1_4:48464650-48464669 Msa0166870:CDS 35.0%
GTAACTCATCCTTACAAAAC+CGG - chr1_4:48464922-48464941 Msa0166870:intron 35.0%
! TTGGTTCTTTCCCAATAGTT+AGG - chr1_4:48465013-48465032 Msa0166870:intron 35.0%
! TAGAGAAGTTGGTTAATTGG+AGG - chr1_4:48465073-48465092 Msa0166870:intron 35.0%
! AGAGAAGTTGGTTAATTGGA+GGG - chr1_4:48465074-48465093 Msa0166870:intron 35.0%
ATGATTTAATCCTGCTCCAA+GGG + chr1_4:48465180-48465199 None:intergenic 35.0%
AATGATTTAATCCTGCTCCA+AGG + chr1_4:48465181-48465200 None:intergenic 35.0%
AGTAACTTACGAGCAAAGAT+TGG + chr1_4:48465311-48465330 None:intergenic 35.0%
!! GATTAATGCAAGGTATTGGT+TGG + chr1_4:48465471-48465490 None:intergenic 35.0%
!! AAAAGTAACACTAGCCTTAG+TGG - chr1_4:48465599-48465618 Msa0166870:intron 35.0%
! TTTGCCTGTTAGTTTGATCT+CGG - chr1_4:48465794-48465813 Msa0166870:intron 35.0%
AAAAATTGGTTGAACCAACC+GGG + chr1_4:48465842-48465861 None:intergenic 35.0%
TTTCGCATTCTATTAATCCG+TGG - chr1_4:48465904-48465923 Msa0166870:intron 35.0%
! CATAAATATCAGGGTGTTAC+CGG + chr1_4:48465986-48466005 None:intergenic 35.0%
CTCAATTGAATGCTTCAACT+CGG + chr1_4:48466278-48466297 None:intergenic 35.0%
GAATCGACAAAAATGAATGG+TGG + chr1_4:48466338-48466357 None:intergenic 35.0%
ATTGACAAACCTGAAGTTCT+TGG + chr1_4:48466466-48466485 None:intergenic 35.0%
TCAATTTGAGCTATCTGCAA+TGG - chr1_4:48466481-48466500 Msa0166870:CDS 35.0%
! ATTTGCCAAAGAGTATACTC+GGG + chr1_4:48466622-48466641 None:intergenic 35.0%
! CATTTGCCAAAGAGTATACT+CGG + chr1_4:48466623-48466642 None:intergenic 35.0%
TCAACATTGGATTGCTGAAT+TGG - chr1_4:48466650-48466669 Msa0166870:intron 35.0%
GAAGGAGTTGAAGTTGAAAT+TGG - chr1_4:48466822-48466841 Msa0166870:intron 35.0%
TCTTGAAATTACGATGGAAG+AGG - chr1_4:48466942-48466961 Msa0166870:intron 35.0%
ATCTAAAGAAATGGGGATGA+TGG - chr1_4:48467109-48467128 Msa0166870:intron 35.0%
AGGCGAGAAAGAAAATGAAA+GGG + chr1_4:48467244-48467263 None:intergenic 35.0%
TAGGCGAGAAAGAAAATGAA+AGG + chr1_4:48467245-48467264 None:intergenic 35.0%
! ATGTTAGCGGTTTGGAAAAA+AGG - chr1_4:48467419-48467438 Msa0166870:CDS 35.0%
! AAGCTGTTTCAATAAGGCAT+TGG - chr1_4:48467496-48467515 Msa0166870:intron 35.0%
! TTTGATGACTTGCACCAAAT+TGG + chr1_4:48467606-48467625 None:intergenic 35.0%
AAAAGATAGTAAGAGTTGGG+GGG + chr1_4:48467899-48467918 None:intergenic 35.0%
! TTAGAGTCTAAGATCTGTTG+GGG - chr1_4:48468032-48468051 Msa0166870:intron 35.0%
TAACTCAACCCTTACAAAAC+CGG + chr1_4:48468196-48468215 None:intergenic 35.0%
AATGACTTCACAAATCGTGT+TGG - chr1_4:48468288-48468307 Msa0166870:intron 35.0%
GTATGTATGGTACTAGTTCA+AGG + chr1_4:48468352-48468371 None:intergenic 35.0%
!! CAGAGGCATTAATACAGTTA+AGG + chr1_4:48468525-48468544 None:intergenic 35.0%
!! GACATGCTCTAAGATTTAGA+AGG + chr1_4:48468626-48468645 None:intergenic 35.0%
ACAGATTGAAAAGTTACAGG+AGG - chr1_4:48468824-48468843 Msa0166870:intron 35.0%
AAAAGTTACAGGAGGAGAAT+CGG - chr1_4:48468832-48468851 Msa0166870:intron 35.0%
!! TCGGGAGTTAGAATTTGTTT+TGG - chr1_4:48468851-48468870 Msa0166870:intron 35.0%
GCCTAGAAGATTATCAGAAA+AGG - chr1_4:48468883-48468902 Msa0166870:intron 35.0%
! ATAACAAGCATTCTAGAGAC+TGG + chr1_4:48469164-48469183 None:intergenic 35.0%
!! CAATCAGCGGATTTTAAACA+TGG + chr1_4:48469209-48469228 None:intergenic 35.0%
ATCCACCAAAACTTGAATAC+AGG + chr1_4:48469242-48469261 None:intergenic 35.0%
!!! ATTCAAGTTTTGGTGGATTC+TGG - chr1_4:48469244-48469263 Msa0166870:intron 35.0%
!! TCTGGAACTTGCTTTGTTTA+TGG - chr1_4:48469262-48469281 Msa0166870:intron 35.0%
AATCCATGAAAATCAGCAAG+TGG + chr1_4:48469323-48469342 None:intergenic 35.0%
!!! ACTTGCTGATTTTCATGGAT+TGG - chr1_4:48469322-48469341 Msa0166870:CDS 35.0%
! AGATTTGCAAAAGAAAGTGC+TGG + chr1_4:48469427-48469446 None:intergenic 35.0%
TATGTATTACCATCCTCCAA+GGG + chr1_4:48469474-48469493 None:intergenic 35.0%
!! GCATTTGGTTAATTGACTTG+AGG - chr1_4:48469611-48469630 Msa0166870:CDS 35.0%
CTTTCAGATTCTCTAACTTC+TGG + chr1_4:48469678-48469697 None:intergenic 35.0%
CAGAAGTTAGAGAATCTGAA+AGG - chr1_4:48469676-48469695 Msa0166870:CDS 35.0%
CCCAGTTTGATGAAAATGAA+AGG - chr1_4:48469841-48469860 Msa0166870:CDS 35.0%
!! GATTTGCTGCATTGAAAAAC+TGG - chr1_4:48469897-48469916 Msa0166870:intron 35.0%
ATATGGAACTAAAAGGGAAG+GGG + chr1_4:48469944-48469963 None:intergenic 35.0%
!!! CCCTTTTAGTTCCATATTTG+TGG - chr1_4:48469947-48469966 Msa0166870:intron 35.0%
! TCTAAAGGAGCACAATATAC+CGG + chr1_4:48470064-48470083 None:intergenic 35.0%
CTTTAGATAGTGTATGCCTT+GGG - chr1_4:48470077-48470096 Msa0166870:CDS 35.0%
!!! AGAATTCTGCAATTTTGGCT+TGG + chr1_4:48470519-48470538 None:intergenic 35.0%
! GAGAGAGAATTCTGCAATTT+TGG + chr1_4:48470524-48470543 None:intergenic 35.0%
ATCATCTAATCTCCTATCCA+TGG - chr1_4:48470875-48470894 Msa0166870:intron 35.0%
! CTTTTATTGTGAGAGATGAG+AGG + chr1_4:48471102-48471121 None:intergenic 35.0%
AGAGGACATATCAAATGAGA+GGG + chr1_4:48471125-48471144 None:intergenic 35.0%
TAGAGGACATATCAAATGAG+AGG + chr1_4:48471126-48471145 None:intergenic 35.0%
TCGTTTACTCCTTCATATGA+AGG + chr1_4:48471293-48471312 None:intergenic 35.0%
ATCAACATATTGATAAGCGG+AGG + chr1_4:48471328-48471347 None:intergenic 35.0%
AAAAAATCTGGAGATGACTG+AGG - chr1_4:48471386-48471405 Msa0166870:intron 35.0%
GAAGAAAAGTGAAGTCATGA+AGG + chr1_4:48471466-48471485 None:intergenic 35.0%
TCAATGTTCCTGTAGACTAT+TGG - chr1_4:48471553-48471572 Msa0166870:intron 35.0%
GAGGGATGACTATAATATCA+AGG - chr1_4:48471633-48471652 Msa0166870:intron 35.0%
! CAGATGTCTTTGTTATGTCT+AGG - chr1_4:48471731-48471750 Msa0166870:intron 35.0%
CTTCCACATCTTTCTGAATT+TGG + chr1_4:48472730-48472749 None:intergenic 35.0%
AAAAGGAATTGGACAGTGAA+AGG - chr1_4:48472756-48472775 Msa0166870:CDS 35.0%
CTTAGTCATTCGATCAAGTT+TGG - chr1_4:48472790-48472809 Msa0166870:CDS 35.0%
!! TGAATTAGCGATATTGGTTC+GGG - chr1_4:48472946-48472965 Msa0166870:intron 35.0%
! CTCAACAAGTTTTCGCAATT+AGG - chr1_4:48473087-48473106 Msa0166870:CDS 35.0%
TTGCTGGAAATGAAAATGAC+AGG - chr1_4:48473216-48473235 Msa0166870:intron 35.0%
AGATATCTCTTTACTCGTCT+AGG - chr1_4:48473454-48473473 Msa0166870:intron 35.0%
TAGCATTTGCATTTCACCTA+GGG + chr1_4:48473481-48473500 None:intergenic 35.0%
ATAGCATTTGCATTTCACCT+AGG + chr1_4:48473482-48473501 None:intergenic 35.0%
! TGTCTAGATTCTGGAAAGTT+TGG - chr1_4:48473529-48473548 Msa0166870:intron 35.0%
! TATGCATTGATGGTTGACTT+TGG - chr1_4:48473586-48473605 Msa0166870:intron 35.0%
TACATCCAATTATGTCATGC+AGG - chr1_4:48473656-48473675 Msa0166870:intron 35.0%
AGAACTGTTGTTGGAAAAGT+TGG + chr1_4:48473855-48473874 None:intergenic 35.0%
! AATGCACACATGTTGTCTTT+TGG - chr1_4:48474109-48474128 Msa0166870:intron 35.0%
TTCTTAATGACTAACCCTCT+AGG + chr1_4:48474265-48474284 None:intergenic 35.0%
TAAAAAAGAGGGAAGTCTAG+AGG - chr1_4:48474302-48474321 Msa0166870:intron 35.0%
AAAAAAGAGGGAAGTCTAGA+GGG - chr1_4:48474303-48474322 Msa0166870:intron 35.0%
TTTAGGAGAGAAATTCTCAC+TGG - chr1_4:48474408-48474427 Msa0166870:intron 35.0%
ACCCGAGCTGTAATATTTAT+TGG + chr1_4:48474442-48474461 None:intergenic 35.0%
ATAAATATTACAGCTCGGGT+AGG - chr1_4:48474442-48474461 Msa0166870:intron 35.0%
GGAAATAATAAACCAGGGTT+TGG + chr1_4:48474474-48474493 None:intergenic 35.0%
GAGTTTGATCTGTATTTGAC+AGG - chr1_4:48474724-48474743 Msa0166870:intron 35.0%
CCAAAACATTAAACAGCACA+AGG + chr1_4:48474909-48474928 None:intergenic 35.0%
!!! CCTTGTGCTGTTTAATGTTT+TGG - chr1_4:48474906-48474925 Msa0166870:CDS 35.0%
CTTCTTCCTAATGCTTCGTT+TGG - chr1_4:48461239-48461258 Msa0166870:three_prime_UTR 40.0%
! AAGGAACCAAACGAAGCATT+AGG + chr1_4:48461248-48461267 None:intergenic 40.0%
TCAAATTCGCAGAACCCAAA+TGG - chr1_4:48461273-48461292 Msa0166870:three_prime_UTR 40.0%
! CGTGGTCTGAATTTTCCATT+TGG + chr1_4:48461291-48461310 None:intergenic 40.0%
!! AGATGAGGCTTCTTGTTGTT+GGG + chr1_4:48461319-48461338 None:intergenic 40.0%
! AAGATGAGGCTTCTTGTTGT+TGG + chr1_4:48461320-48461339 None:intergenic 40.0%
! TGGTTGAATTTGGTGAAACG+CGG + chr1_4:48461360-48461379 None:intergenic 40.0%
! GGAGAATGGTTGGTTGAATT+TGG + chr1_4:48461370-48461389 None:intergenic 40.0%
!! TTTGCTGTTAGGAGAATGGT+TGG + chr1_4:48461380-48461399 None:intergenic 40.0%
TTTAAGAAAAAAGCCTGGCC+TGG + chr1_4:48462024-48462043 None:intergenic 40.0%
!! CCTGGCCTTTTAAGCTAAAT+AGG + chr1_4:48462074-48462093 None:intergenic 40.0%
! CCTATTTAGCTTAAAAGGCC+AGG - chr1_4:48462071-48462090 Msa0166870:intron 40.0%
CTTAAATAGGCCAGCCTAAT+AGG + chr1_4:48462125-48462144 None:intergenic 40.0%
!!! CTGTCATAGGCCTACTTTTT+AGG + chr1_4:48462487-48462506 None:intergenic 40.0%
CTAAAAAGTAGGCCTATGAC+AGG - chr1_4:48462485-48462504 Msa0166870:CDS 40.0%
TTAGAAAAATATGGCAGGCC+AGG - chr1_4:48462528-48462547 Msa0166870:CDS 40.0%
TTACGATTAGGGATGGGAAT+AGG + chr1_4:48462585-48462604 None:intergenic 40.0%
AACAGCTTACGATTAGGGAT+GGG + chr1_4:48462591-48462610 None:intergenic 40.0%
AAACAGCTTACGATTAGGGA+TGG + chr1_4:48462592-48462611 None:intergenic 40.0%
AGTCGATCTAAACAGACTCT+AGG - chr1_4:48462657-48462676 Msa0166870:intron 40.0%
GTCGATCTAAACAGACTCTA+GGG - chr1_4:48462658-48462677 Msa0166870:intron 40.0%
GGGCTATGAAGAGTAGAAAA+AGG - chr1_4:48462678-48462697 Msa0166870:intron 40.0%
!! GTTGATGATATGGCTCTTCT+CGG - chr1_4:48463143-48463162 Msa0166870:intron 40.0%
! TTGATGATATGGCTCTTCTC+GGG - chr1_4:48463144-48463163 Msa0166870:intron 40.0%
GATTACCTCGATAATCCACA+AGG - chr1_4:48463206-48463225 Msa0166870:intron 40.0%
! AAGTACCTTGTGGATTATCG+AGG + chr1_4:48463214-48463233 None:intergenic 40.0%
! GTGCTTGTTAAAGTACCTTG+TGG + chr1_4:48463224-48463243 None:intergenic 40.0%
!! TTTGCGTCGGTTATCTACTA+CGG - chr1_4:48463460-48463479 Msa0166870:intron 40.0%
!! AGATACCGTTGATGATCAGA+TGG - chr1_4:48463502-48463521 Msa0166870:intron 40.0%
TACTCTCCATGCAAAACACA+AGG - chr1_4:48463811-48463830 Msa0166870:intron 40.0%
TCTGACATTAAACGCCTTAC+AGG - chr1_4:48463884-48463903 Msa0166870:CDS 40.0%
GATGCCCCACTATAACTTTA+TGG + chr1_4:48464340-48464359 None:intergenic 40.0%
TGAAACAAAGGTGATCTCTG+AGG - chr1_4:48464480-48464499 Msa0166870:intron 40.0%
ATCCATTCCCTCGTTTAATC+AGG - chr1_4:48464533-48464552 Msa0166870:intron 40.0%
CTAACTCAGCCTTACAAAAC+CGG - chr1_4:48464728-48464747 Msa0166870:intron 40.0%
!! TCTTATGAGCCGGTTTTGTA+AGG + chr1_4:48464740-48464759 None:intergenic 40.0%
AACTCTTATCTACCCGAAGT+AGG - chr1_4:48464782-48464801 Msa0166870:intron 40.0%
TCAGAGCTTGTCGAATTCAA+GGG + chr1_4:48464882-48464901 None:intergenic 40.0%
ATCAGAGCTTGTCGAATTCA+AGG + chr1_4:48464883-48464902 None:intergenic 40.0%
GTTACGCCCTAATATCAACA+TGG + chr1_4:48464907-48464926 None:intergenic 40.0%
!! TCTTATGAGCCGGTTTTGTA+AGG + chr1_4:48464740-48464759 None:intergenic 40.0%
ACACTCTTCATCTTATGAGC+CGG + chr1_4:48464944-48464963 None:intergenic 40.0%
AAAGAACCAAGTCCTACTTC+GGG + chr1_4:48465003-48465022 None:intergenic 40.0%
GAAAGAACCAAGTCCTACTT+CGG + chr1_4:48465004-48465023 None:intergenic 40.0%
AAAAATTAGTCCGAACTGGC+TGG - chr1_4:48465742-48465761 Msa0166870:intron 40.0%
GTAACCGAGATCAAACTAAC+AGG + chr1_4:48465801-48465820 None:intergenic 40.0%
AAAATTGGTTGAACCAACCG+GGG + chr1_4:48465841-48465860 None:intergenic 40.0%
TGGTTCTCTTGGTTTAACCA+CGG + chr1_4:48465924-48465943 None:intergenic 40.0%
TACCGGAGTAGATATTGAAC+CGG + chr1_4:48465969-48465988 None:intergenic 40.0%
AATGCAAAAGGATGCAGCTA+TGG - chr1_4:48466174-48466193 Msa0166870:intron 40.0%
ATGCAAAAGGATGCAGCTAT+GGG - chr1_4:48466175-48466194 Msa0166870:intron 40.0%
! ATTCACTGAATCAGCATTGG+AGG + chr1_4:48466209-48466228 None:intergenic 40.0%
!! TCCAATGCTGATTCAGTGAA+TGG - chr1_4:48466208-48466227 Msa0166870:intron 40.0%
TCCATTCACTGAATCAGCAT+TGG + chr1_4:48466212-48466231 None:intergenic 40.0%
! CGAGTTGAAGCATTCAATTG+AGG - chr1_4:48466276-48466295 Msa0166870:intron 40.0%
! CGACAAAAATGAATGGTGGA+AGG + chr1_4:48466334-48466353 None:intergenic 40.0%
CAATTCCCGAGTATACTCTT+TGG - chr1_4:48466614-48466633 Msa0166870:intron 40.0%
! AAATGCAATTTTAGGCTGGC+AGG - chr1_4:48466779-48466798 Msa0166870:intron 40.0%
! AATGCAATTTTAGGCTGGCA+GGG - chr1_4:48466780-48466799 Msa0166870:intron 40.0%
TCCATGACAATTCTGACTCT+AGG - chr1_4:48466869-48466888 Msa0166870:intron 40.0%
TCCTAGAGTCAGAATTGTCA+TGG + chr1_4:48466873-48466892 None:intergenic 40.0%
TCACTAAGAGCAACATTGAG+TGG - chr1_4:48467197-48467216 Msa0166870:intron 40.0%
AAGAGCAACATTGAGTGGAA+AGG - chr1_4:48467202-48467221 Msa0166870:intron 40.0%
TCACTCAAATGTTAGCGGTT+TGG - chr1_4:48467411-48467430 Msa0166870:CDS 40.0%
! GGTGAACCCAAATTCTAAGA+TGG - chr1_4:48468007-48468026 Msa0166870:intron 40.0%
!! TTCACAAGCCGGTTTTGTAA+GGG - chr1_4:48468185-48468204 Msa0166870:intron 40.0%
!! GGTTTTGTAAGGGTTGAGTT+AGG - chr1_4:48468195-48468214 Msa0166870:intron 40.0%
! ACTTCACAAATCGTGTTGGT+TGG - chr1_4:48468292-48468311 Msa0166870:intron 40.0%
TACTCCAAGAGTTTATAGGC+AGG - chr1_4:48468319-48468338 Msa0166870:intron 40.0%
AGAACCTGCCTATAAACTCT+TGG + chr1_4:48468326-48468345 None:intergenic 40.0%
GCTTGTCTGCTTCAAAACAA+AGG + chr1_4:48468401-48468420 None:intergenic 40.0%
GTTCAGCACATTTGTTTGCA+AGG + chr1_4:48468435-48468454 None:intergenic 40.0%
TGCAAACAAATGTGCTGAAC+AGG - chr1_4:48468435-48468454 Msa0166870:intron 40.0%
! CAAATGTGCTGAACAGGTTT+TGG - chr1_4:48468441-48468460 Msa0166870:intron 40.0%
!! AAGCATTGGTGAGTCTACTT+TGG - chr1_4:48468479-48468498 Msa0166870:intron 40.0%
AAAGTTACAGGAGGAGAATC+GGG - chr1_4:48468833-48468852 Msa0166870:intron 40.0%
! TCAGAAAAGGTATGCTGATC+TGG - chr1_4:48468896-48468915 Msa0166870:intron 40.0%
! CAGAAAAGGTATGCTGATCT+GGG - chr1_4:48468897-48468916 Msa0166870:intron 40.0%
! AGAAAAGGTATGCTGATCTG+GGG - chr1_4:48468898-48468917 Msa0166870:intron 40.0%
CTCTTGTAGCAAAGAGAAAG+AGG + chr1_4:48469093-48469112 None:intergenic 40.0%
! GATTTTAAACATGGGCAAGG+GGG + chr1_4:48469200-48469219 None:intergenic 40.0%
! GGATTTTAAACATGGGCAAG+GGG + chr1_4:48469201-48469220 None:intergenic 40.0%
! CGGATTTTAAACATGGGCAA+GGG + chr1_4:48469202-48469221 None:intergenic 40.0%
AACTTGAATACAGGAGGTCA+GGG + chr1_4:48469233-48469252 None:intergenic 40.0%
AAACTTGAATACAGGAGGTC+AGG + chr1_4:48469234-48469253 None:intergenic 40.0%
!! GACCTCCTGTATTCAAGTTT+TGG - chr1_4:48469234-48469253 Msa0166870:intron 40.0%
CACCAAAACTTGAATACAGG+AGG + chr1_4:48469239-48469258 None:intergenic 40.0%
!! CTCCTGTATTCAAGTTTTGG+TGG - chr1_4:48469237-48469256 Msa0166870:intron 40.0%
!!! GTACCACTTGCTGATTTTCA+TGG - chr1_4:48469317-48469336 Msa0166870:CDS 40.0%
! CCATTGGTGGACAAAATTTG+AGG + chr1_4:48469402-48469421 None:intergenic 40.0%
! CCTCAAATTTTGTCCACCAA+TGG - chr1_4:48469399-48469418 Msa0166870:CDS 40.0%
!! AAAGAAAGTGCTGGAACCAT+TGG + chr1_4:48469418-48469437 None:intergenic 40.0%
TCTAATCTATTCTCCCTTGG+AGG - chr1_4:48469458-48469477 Msa0166870:CDS 40.0%
GTATGTATTACCATCCTCCA+AGG + chr1_4:48469475-48469494 None:intergenic 40.0%
AAGCTGAACTAGAGGAGTTA+AGG - chr1_4:48469817-48469836 Msa0166870:CDS 40.0%
AGCTGAACTAGAGGAGTTAA+GGG - chr1_4:48469818-48469837 Msa0166870:CDS 40.0%
! TTCTGGTGATGAAGAGTGAA+AGG - chr1_4:48469991-48470010 Msa0166870:CDS 40.0%
AGTTCAAGGACTTTGTCCTT+TGG - chr1_4:48470038-48470057 Msa0166870:CDS 40.0%
CCAAGGCATACACTATCTAA+AGG + chr1_4:48470079-48470098 None:intergenic 40.0%
CCTTTAGATAGTGTATGCCT+TGG - chr1_4:48470076-48470095 Msa0166870:CDS 40.0%
ATGACGGTCACTAGTTAATC+TGG - chr1_4:48470137-48470156 Msa0166870:CDS 40.0%
TGACGGTCACTAGTTAATCT+GGG - chr1_4:48470138-48470157 Msa0166870:CDS 40.0%
GATCCAAGGGTCATGATTTA+AGG + chr1_4:48470406-48470425 None:intergenic 40.0%
!!! ATTCTGCAATTTTGGCTTGG+TGG + chr1_4:48470516-48470535 None:intergenic 40.0%
! AGAAGACTGCAATTTTCGGT+TGG + chr1_4:48470551-48470570 None:intergenic 40.0%
TCTTCTTTCTTAGCTTCTCC+AGG + chr1_4:48471001-48471020 None:intergenic 40.0%
GAGGGCTAAAATATAACCCT+TGG + chr1_4:48471083-48471102 None:intergenic 40.0%
ATGCTTGACCAATAGTCTAC+AGG + chr1_4:48471564-48471583 None:intergenic 40.0%
GACATAACAAAGACATCTGC+AGG + chr1_4:48471730-48471749 None:intergenic 40.0%
! GAATCAACTTTTGACCAGCT+TGG - chr1_4:48472204-48472223 Msa0166870:intron 40.0%
! CTGTTGAAGTTGATCAGCTA+AGG + chr1_4:48472392-48472411 None:intergenic 40.0%
ATTTAGCGGCTTCTGATAGA+AGG + chr1_4:48472586-48472605 None:intergenic 40.0%
CGACCAAATTCAGAAAGATG+TGG - chr1_4:48472724-48472743 Msa0166870:CDS 40.0%
AGATGTGGAAGCTTGTGAAA+AGG - chr1_4:48472739-48472758 Msa0166870:CDS 40.0%
GGAAGCTTGTGAAAAGGAAT+TGG - chr1_4:48472745-48472764 Msa0166870:CDS 40.0%
CATTCGATCAAGTTTGGATC+CGG - chr1_4:48472796-48472815 Msa0166870:CDS 40.0%
ACTAAACCTCACTTAGTGGA+GGG + chr1_4:48472865-48472884 None:intergenic 40.0%
ACACACTAAACCTCACTTAG+TGG + chr1_4:48472869-48472888 None:intergenic 40.0%
! TCATCGATTACACAACCTTG+CGG + chr1_4:48472929-48472948 None:intergenic 40.0%
AAGAACCGTGGTATATGGTT+CGG - chr1_4:48472996-48473015 Msa0166870:intron 40.0%
TACACAAACTAAGCAGCCAT+GGG + chr1_4:48473042-48473061 None:intergenic 40.0%
TTACACAAACTAAGCAGCCA+TGG + chr1_4:48473043-48473062 None:intergenic 40.0%
!!! GGACTGCTGCCATTTTTATT+GGG + chr1_4:48473396-48473415 None:intergenic 40.0%
!!! AGGACTGCTGCCATTTTTAT+TGG + chr1_4:48473397-48473416 None:intergenic 40.0%
GAGTGAAATGCCCTCTAAAT+TGG - chr1_4:48473623-48473642 Msa0166870:intron 40.0%
CTGTGTTGAGCCAATTTAGA+GGG + chr1_4:48473636-48473655 None:intergenic 40.0%
ACTGTGTTGAGCCAATTTAG+AGG + chr1_4:48473637-48473656 None:intergenic 40.0%
GAACTCCTGCATGACATAAT+TGG + chr1_4:48473664-48473683 None:intergenic 40.0%
TTATGTCATGCAGGAGTTCA+CGG - chr1_4:48473665-48473684 Msa0166870:intron 40.0%
CAGAATTCAGCTCAGCAATT+TGG + chr1_4:48473726-48473745 None:intergenic 40.0%
ATTGCTGAGCTGAATTCTGA+AGG - chr1_4:48473727-48473746 Msa0166870:intron 40.0%
!!! CTGTTTTTACCTCCTTTGGA+CGG + chr1_4:48473831-48473850 None:intergenic 40.0%
TAAAAGAGAGGGAAGTCTAG+AGG - chr1_4:48474354-48474373 Msa0166870:intron 40.0%
AAAAGAGAGGGAAGTCTAGA+GGG - chr1_4:48474355-48474374 Msa0166870:intron 40.0%
TGAGCTTAAGAGCTCTACAA+TGG + chr1_4:48474512-48474531 None:intergenic 40.0%
GAAACAGGAGTGAGAAGATG+AGG + chr1_4:48461334-48461353 None:intergenic 45.0%
! GGTTGAATTTGGTGAAACGC+GGG + chr1_4:48461359-48461378 None:intergenic 45.0%
!! TCAGAAGTGTCAGTGCTACA+TGG + chr1_4:48461704-48461723 None:intergenic 45.0%
!! GTAGCACTGACACTTCTGAT+AGG - chr1_4:48461705-48461724 Msa0166870:intron 45.0%
TGAAGCACGGACACTTACAT+CGG + chr1_4:48461837-48461856 None:intergenic 45.0%
TCGTAAGTAGGGATGGGAAT+AGG - chr1_4:48461961-48461980 Msa0166870:intron 45.0%
!! GGCTTAAGAGGCTTTTTGAG+AGG + chr1_4:48462104-48462123 None:intergenic 45.0%
! AGGCTTTTAAACAGGCTAGC+AGG - chr1_4:48462429-48462448 Msa0166870:intron 45.0%
!!! CTACTTTTTAGGCATGAGCC+TGG + chr1_4:48462476-48462495 None:intergenic 45.0%
CAGGCTCATGCCTAAAAAGT+AGG - chr1_4:48462474-48462493 Msa0166870:CDS 45.0%
ATTAGGGATGGGAATAGGCT+AGG + chr1_4:48462580-48462599 None:intergenic 45.0%
AACGCAGAAACACGCTTTAC+AGG - chr1_4:48462951-48462970 Msa0166870:intron 45.0%
AATCAACCAACACTGGGATC+AGG - chr1_4:48463038-48463057 Msa0166870:intron 45.0%
GAATAACCTGATCCCAGTGT+TGG + chr1_4:48463047-48463066 None:intergenic 45.0%
TGGGAGAGGCAAAGATTCTT+TGG - chr1_4:48463175-48463194 Msa0166870:intron 45.0%
AGATAACCGACGCAAAGCAA+GGG + chr1_4:48463456-48463475 None:intergenic 45.0%
TAGATAACCGACGCAAAGCA+AGG + chr1_4:48463457-48463476 None:intergenic 45.0%
CACGGAGATTTATCCACAGA+AGG - chr1_4:48463554-48463573 Msa0166870:CDS 45.0%
GTCCTGATTAAACGAGGGAA+TGG + chr1_4:48464538-48464557 None:intergenic 45.0%
!! CGGTTTTGTAAGGCTGAGTT+AGG + chr1_4:48464730-48464749 None:intergenic 45.0%
! CAAAACCGGCTCATAAGATG+AGG - chr1_4:48464742-48464761 Msa0166870:intron 45.0%
TATCTACCCGAAGTAGGACT+TGG - chr1_4:48464788-48464807 Msa0166870:intron 45.0%
ATCTACCCGAAGTAGGACTT+GGG - chr1_4:48464789-48464808 Msa0166870:intron 45.0%
AAACACCCAAGTCCTACTTC+GGG + chr1_4:48464797-48464816 None:intergenic 45.0%
GAAACACCCAAGTCCTACTT+CGG + chr1_4:48464798-48464817 None:intergenic 45.0%
!! AAAAAGAGTGCTGGGCGTAA+GGG + chr1_4:48464832-48464851 None:intergenic 45.0%
! TTACGCCCAGCACTCTTTTT+GGG - chr1_4:48464832-48464851 Msa0166870:CDS 45.0%
! GAGTCTTATCTACCCGAAGT+AGG - chr1_4:48464988-48465007 Msa0166870:intron 45.0%
TATCTACCCGAAGTAGGACT+TGG - chr1_4:48464788-48464807 Msa0166870:intron 45.0%
TGTGTAAAAGGGGAAACCCT+TGG - chr1_4:48465161-48465180 Msa0166870:intron 45.0%
!! AGTAACACTAGCCTTAGTGG+AGG - chr1_4:48465602-48465621 Msa0166870:intron 45.0%
CAAAACTGCATCCTCCACTA+AGG + chr1_4:48465616-48465635 None:intergenic 45.0%
TTTGCAGTAGTATGCCGAGT+AGG - chr1_4:48465632-48465651 Msa0166870:intron 45.0%
TTGCAGTAGTATGCCGAGTA+GGG - chr1_4:48465633-48465652 Msa0166870:intron 45.0%
ACCAATTGAACCAGCCAGTT+CGG + chr1_4:48465755-48465774 None:intergenic 45.0%
ATCTCGGTTACATTGCAGTC+TGG - chr1_4:48465810-48465829 Msa0166870:intron 45.0%
!! CTCTAGGACATTGGTTCTCT+TGG + chr1_4:48465935-48465954 None:intergenic 45.0%
CAAGAGAACCAATGTCCTAG+AGG - chr1_4:48465933-48465952 Msa0166870:intron 45.0%
GCATTCAATTGAGGAAGCCA+AGG - chr1_4:48466285-48466304 Msa0166870:intron 45.0%
TTTCTGAGCTCCAAGATGCA+CGG - chr1_4:48466411-48466430 Msa0166870:intron 45.0%
! GATTTTCTTCCCGTGCATCT+TGG + chr1_4:48466424-48466443 None:intergenic 45.0%
GCAGGGTTAACGTCTCAAAA+CGG - chr1_4:48466797-48466816 Msa0166870:intron 45.0%
CAGGGTTAACGTCTCAAAAC+GGG - chr1_4:48466798-48466817 Msa0166870:intron 45.0%
TAACGTCTCAAAACGGGAGA+AGG - chr1_4:48466804-48466823 Msa0166870:intron 45.0%
TGGAGTCTGCTGTTAATGCA+AGG - chr1_4:48466842-48466861 Msa0166870:intron 45.0%
TGAAGCCATCACACGAAACT+CGG + chr1_4:48467084-48467103 None:intergenic 45.0%
! TAGCGGTTTGGAAAAAAGGC+AGG - chr1_4:48467423-48467442 Msa0166870:CDS 45.0%
CCTTACAAGATGGCAAAACG+AGG + chr1_4:48467929-48467948 None:intergenic 45.0%
! CCTCGTTTTGCCATCTTGTA+AGG - chr1_4:48467926-48467945 Msa0166870:intron 45.0%
TCGCATGAGACCTTACAAGA+TGG + chr1_4:48467939-48467958 None:intergenic 45.0%
CGATGCATGTGAGGTGTATT+GGG - chr1_4:48467956-48467975 Msa0166870:intron 45.0%
GATGCATGTGAGGTGTATTG+GGG - chr1_4:48467957-48467976 Msa0166870:intron 45.0%
ATGCATGTGAGGTGTATTGG+GGG - chr1_4:48467958-48467977 Msa0166870:intron 45.0%
TCGGTCACACACAAAATGAC+CGG - chr1_4:48468078-48468097 Msa0166870:intron 45.0%
CACACAAAATGACCGGTCAT+AGG - chr1_4:48468085-48468104 Msa0166870:intron 45.0%
ACTCTCAACACACCTATGAC+CGG + chr1_4:48468100-48468119 None:intergenic 45.0%
GTGTGTTGAGAGTCTCACAT+TGG - chr1_4:48468107-48468126 Msa0166870:intron 45.0%
GTTGAGAGTCTCACATTGGA+CGG - chr1_4:48468111-48468130 Msa0166870:intron 45.0%
TTGAGAGTCTCACATTGGAC+GGG - chr1_4:48468112-48468131 Msa0166870:intron 45.0%
!! CTTCACAAGCCGGTTTTGTA+AGG - chr1_4:48468184-48468203 Msa0166870:intron 45.0%
! GATCTGGGGTTGTTCAGTAA+TGG - chr1_4:48468912-48468931 Msa0166870:intron 45.0%
! GCGGATTTTAAACATGGGCA+AGG + chr1_4:48469203-48469222 None:intergenic 45.0%
ATCTATTCTCCCTTGGAGGA+TGG - chr1_4:48469462-48469481 Msa0166870:CDS 45.0%
CTGAAGCTGCTTGTGAACAA+AGG - chr1_4:48469781-48469800 Msa0166870:intron 45.0%
CAGCTCTTACAAACATCCCA+AGG + chr1_4:48470096-48470115 None:intergenic 45.0%
! TAGAGGGCATATCAAGTGAG+AGG - chr1_4:48470356-48470375 Msa0166870:intron 45.0%
! AGAGGGCATATCAAGTGAGA+GGG - chr1_4:48470357-48470376 Msa0166870:intron 45.0%
GAGCCTTAAATCATGACCCT+TGG - chr1_4:48470400-48470419 Msa0166870:intron 45.0%
CACGGTAAAGATCGATCCAA+GGG + chr1_4:48470419-48470438 None:intergenic 45.0%
CTTATCTCAGTGCCATGGAT+AGG + chr1_4:48470890-48470909 None:intergenic 45.0%
! TGTTGCTTATCTCAGTGCCA+TGG + chr1_4:48470895-48470914 None:intergenic 45.0%
AGCAACAGAAGAAGCCAAGA+AGG - chr1_4:48470908-48470927 Msa0166870:intron 45.0%
GCAACAGAAGAAGCCAAGAA+GGG - chr1_4:48470909-48470928 Msa0166870:intron 45.0%
CAACAGAAGAAGCCAAGAAG+GGG - chr1_4:48470910-48470929 Msa0166870:intron 45.0%
AACAGAAGAAGCCAAGAAGG+GGG - chr1_4:48470911-48470930 Msa0166870:intron 45.0%
TGAGTTGCGATGTGATGAAG+CGG - chr1_4:48470949-48470968 Msa0166870:intron 45.0%
TGTGATGAAGCGGTGAAAGA+AGG - chr1_4:48470959-48470978 Msa0166870:intron 45.0%
GTGATGAAGCGGTGAAAGAA+GGG - chr1_4:48470960-48470979 Msa0166870:intron 45.0%
TGATGAAGCGGTGAAAGAAG+GGG - chr1_4:48470961-48470980 Msa0166870:intron 45.0%
GAAAGAAGGGGATCGAGAAT+TGG - chr1_4:48470973-48470992 Msa0166870:intron 45.0%
AGGAGTTGGGCATGGAAAAA+TGG + chr1_4:48471710-48471729 None:intergenic 45.0%
CAAAGACATCTGCAGGAGTT+GGG + chr1_4:48471723-48471742 None:intergenic 45.0%
ACAAAGACATCTGCAGGAGT+TGG + chr1_4:48471724-48471743 None:intergenic 45.0%
! GCTTGTATCAGAAAGCGTGA+AGG - chr1_4:48472327-48472346 Msa0166870:intron 45.0%
GGCTAAGTAGCAGAGGAAAT+AGG + chr1_4:48472471-48472490 None:intergenic 45.0%
CACTAAACCTCACTTAGTGG+AGG + chr1_4:48472866-48472885 None:intergenic 45.0%
ATAATCGTAGAACCTCCGCA+AGG - chr1_4:48472911-48472930 Msa0166870:CDS 45.0%
AGCTCAAGAACCGTGGTATA+TGG - chr1_4:48472991-48473010 Msa0166870:intron 45.0%
CAGAACCGAACCATATACCA+CGG + chr1_4:48473004-48473023 None:intergenic 45.0%
GATGTCAGCTTACTTTCCCA+TGG - chr1_4:48473023-48473042 Msa0166870:intron 45.0%
CTTGTGCTGTGTCTAGATTC+TGG - chr1_4:48473520-48473539 Msa0166870:intron 45.0%
CGTCCAAAGGAGGTAAAAAC+AGG - chr1_4:48473829-48473848 Msa0166870:intron 45.0%
!!! TGGCCTGTTTTTACCTCCTT+TGG + chr1_4:48473835-48473854 None:intergenic 45.0%
TAGAAGCTTGTCGAAGCTGT+AGG - chr1_4:48474176-48474195 Msa0166870:intron 45.0%
TTAAAGAGAGGGAAGCCTAG+AGG - chr1_4:48474247-48474266 Msa0166870:intron 45.0%
TAAAGAGAGGGAAGCCTAGA+GGG - chr1_4:48474248-48474267 Msa0166870:intron 45.0%
!!! GATAATTTTTTTTTTTTTTT+TGG - chr1_4:48466729-48466748 Msa0166870:intron 5.0%
!! ATATATATATATATATATAG+AGG - chr1_4:48470339-48470358 Msa0166870:intron 5.0%
!! TATATATATATATATATAGA+GGG - chr1_4:48470340-48470359 Msa0166870:intron 5.0%
!! ATATATATATATATATATAG+AGG + chr1_4:48470339-48470358 None:intergenic 5.0%
!! TCTTGTTGTTGGGTTCGTCG+TGG + chr1_4:48461309-48461328 None:intergenic 50.0%
! GCACTGACACTTCTGATAGG+AGG - chr1_4:48461708-48461727 Msa0166870:intron 50.0%
CTGACACTTCTGATAGGAGG+CGG - chr1_4:48461711-48461730 Msa0166870:intron 50.0%
AGCTTAAAAGGCCAGGCCAT+AGG - chr1_4:48462078-48462097 Msa0166870:intron 50.0%
!! TTTTTGAGAGGCCTATGGCC+TGG + chr1_4:48462092-48462111 None:intergenic 50.0%
!! GAGGCTTTTTGAGAGGCCTA+TGG + chr1_4:48462097-48462116 None:intergenic 50.0%
GCCTCTTAAGCCTATTAGGC+TGG - chr1_4:48462112-48462131 Msa0166870:intron 50.0%
GCCAGCCTAATAGGCTTAAG+AGG + chr1_4:48462116-48462135 None:intergenic 50.0%
! GGCCTTCTGAAAGCCTGATA+CGG + chr1_4:48462455-48462474 None:intergenic 50.0%
TATCAGGCTTTCAGAAGGCC+AGG - chr1_4:48462455-48462474 Msa0166870:CDS 50.0%
AAATATGGCAGGCCAGGCTT+AGG - chr1_4:48462534-48462553 Msa0166870:CDS 50.0%
TAACTGGAAATGCTCCGTCC+AGG - chr1_4:48462876-48462895 Msa0166870:intron 50.0%
!! GCTGAACAAGCTGCTGATTC+TGG + chr1_4:48462924-48462943 None:intergenic 50.0%
CTCTTCTCGGGATACAAGCT+GGG - chr1_4:48463156-48463175 Msa0166870:intron 50.0%
TTCCCTTCCTTCGTGTCATC+CGG - chr1_4:48463346-48463365 Msa0166870:intron 50.0%
ATCCGGATGACACGAAGGAA+GGG + chr1_4:48463351-48463370 None:intergenic 50.0%
AGATCATCCGGATGACACGA+AGG + chr1_4:48463356-48463375 None:intergenic 50.0%
GCACTCCTCATCTTATGAGC+CGG + chr1_4:48464750-48464769 None:intergenic 50.0%
!! AAAAGAGTGCTGGGCGTAAG+GGG + chr1_4:48464831-48464850 None:intergenic 50.0%
!! CAAAAAGAGTGCTGGGCGTA+AGG + chr1_4:48464833-48464852 None:intergenic 50.0%
! CTTACGCCCAGCACTCTTTT+TGG - chr1_4:48464831-48464850 Msa0166870:CDS 50.0%
!! CCAAGCCCAAAAAGAGTGCT+GGG + chr1_4:48464840-48464859 None:intergenic 50.0%
! ACCAAGCCCAAAAAGAGTGC+TGG + chr1_4:48464841-48464860 None:intergenic 50.0%
! TCCGAACTGGCTGGTTCAAT+TGG - chr1_4:48465751-48465770 Msa0166870:intron 50.0%
ATTGCAGTCTGGTTGAACCC+CGG - chr1_4:48465821-48465840 Msa0166870:intron 50.0%
GAGTAGATATTGAACCGGCG+TGG + chr1_4:48465964-48465983 None:intergenic 50.0%
!! CGCCGGTTCAATATCTACTC+CGG - chr1_4:48465964-48465983 Msa0166870:intron 50.0%
AGGAGAGCTTGACGAGATTG+TGG - chr1_4:48466111-48466130 Msa0166870:intron 50.0%
CTTCAACTCGGACAAACCCA+TGG + chr1_4:48466266-48466285 None:intergenic 50.0%
TTCTGAGCTCCAAGATGCAC+GGG - chr1_4:48466412-48466431 Msa0166870:intron 50.0%
ATCATTGGCAGAGTCTCTGC+AGG - chr1_4:48466683-48466702 Msa0166870:intron 50.0%
TACGATGGAAGAGGCCAAAC+AGG - chr1_4:48466951-48466970 Msa0166870:intron 50.0%
GAAGAGGCCAAACAGGATAC+TGG - chr1_4:48466958-48466977 Msa0166870:intron 50.0%
ACGCAGACCAGTATCCTGTT+TGG + chr1_4:48466968-48466987 None:intergenic 50.0%
CAAAGCCGAGTTTCGTGTGA+TGG - chr1_4:48467076-48467095 Msa0166870:intron 50.0%
!! GGACGCAAGCTGGTTTGTAA+GGG + chr1_4:48467747-48467766 None:intergenic 50.0%
TCGACCTGTAGGAGCTATTG+GGG + chr1_4:48467768-48467787 None:intergenic 50.0%
GTCGACCTGTAGGAGCTATT+GGG + chr1_4:48467769-48467788 None:intergenic 50.0%
TGTCGACCTGTAGGAGCTAT+TGG + chr1_4:48467770-48467789 None:intergenic 50.0%
ACAACGTGAGAGTCCATGTG+AGG + chr1_4:48467799-48467818 None:intergenic 50.0%
GCACATGGCGAAGATCAAAC+AGG + chr1_4:48467831-48467850 None:intergenic 50.0%
TTCGCCATGTGCACCATGAT+TGG - chr1_4:48467839-48467858 Msa0166870:CDS 50.0%
CAAGCCAATCATGGTGCACA+TGG + chr1_4:48467846-48467865 None:intergenic 50.0%
CAAAGCGAGCAAGCCAATCA+TGG + chr1_4:48467855-48467874 None:intergenic 50.0%
!! TGGGGGGAGCTGTTTTGTTA+CGG + chr1_4:48467883-48467902 None:intergenic 50.0%
GCGATGCATGTGAGGTGTAT+TGG - chr1_4:48467955-48467974 Msa0166870:intron 50.0%
AACCGGGCAATGGTTGAGTT+AGG - chr1_4:48467986-48468005 Msa0166870:intron 50.0%
CACCTAACTCAACCATTGCC+CGG + chr1_4:48467991-48468010 None:intergenic 50.0%
TGAGAGTCTCACATTGGACG+GGG - chr1_4:48468113-48468132 Msa0166870:intron 50.0%
TCACTCAGGACTTCACAAGC+CGG - chr1_4:48468174-48468193 Msa0166870:intron 50.0%
TTGGTAAGCACAACAGCCAC+AGG + chr1_4:48469044-48469063 None:intergenic 50.0%
TGGGCAAGGGGGAAAAATGA+GGG + chr1_4:48469189-48469208 None:intergenic 50.0%
ATGGGCAAGGGGGAAAAATG+AGG + chr1_4:48469190-48469209 None:intergenic 50.0%
!! GAAAGTGCTGGAACCATTGG+TGG + chr1_4:48469415-48469434 None:intergenic 50.0%
TGCTGCAGAAGCTGAACTAG+AGG - chr1_4:48469809-48469828 Msa0166870:intron 50.0%
CAAGGACTTTGTCCTTTGGC+CGG - chr1_4:48470042-48470061 Msa0166870:CDS 50.0%
GAGCACAATATACCGGCCAA+AGG + chr1_4:48470057-48470076 None:intergenic 50.0%
! GAGGGCATATCAAGTGAGAG+GGG - chr1_4:48470358-48470377 Msa0166870:intron 50.0%
CCACGGTAAAGATCGATCCA+AGG + chr1_4:48470420-48470439 None:intergenic 50.0%
CCTTGGATCGATCTTTACCG+TGG - chr1_4:48470417-48470436 Msa0166870:intron 50.0%
GAAGACAAGACGACGCAGAA+GGG + chr1_4:48470488-48470507 None:intergenic 50.0%
AGAAGACAAGACGACGCAGA+AGG + chr1_4:48470489-48470508 None:intergenic 50.0%
! CCACTTGCTGCAACAGATGT+TGG + chr1_4:48471609-48471628 None:intergenic 50.0%
CCAACATCTGTTGCAGCAAG+TGG - chr1_4:48471606-48471625 Msa0166870:intron 50.0%
CAAGGTCTCACAACCCCAAA+TGG + chr1_4:48472280-48472299 None:intergenic 50.0%
TTCCCACCTGGCAAACTCTA+AGG + chr1_4:48472639-48472658 None:intergenic 50.0%
AGAGTTTGCCAGGTGGGAAT+TGG - chr1_4:48472640-48472659 Msa0166870:intron 50.0%
GGAATTGGCTGATGCTGAGA+AGG - chr1_4:48472655-48472674 Msa0166870:intron 50.0%
AAGCTACCCTCCACTAAGTG+AGG - chr1_4:48472856-48472875 Msa0166870:CDS 50.0%
TCGATTACACAACCTTGCGG+AGG + chr1_4:48472926-48472945 None:intergenic 50.0%
!! TAGCGATATTGGTTCGGGCA+TGG - chr1_4:48472951-48472970 Msa0166870:intron 50.0%
GCATGGATCAGTCGTAGTCT+TGG - chr1_4:48472968-48472987 Msa0166870:intron 50.0%
! CTTTACTCGTCTAGGACCCT+AGG - chr1_4:48473462-48473481 Msa0166870:intron 50.0%
GAGTTCACGGAAGAAGCTTG+AGG - chr1_4:48473678-48473697 Msa0166870:intron 50.0%
TGTCTGTTCTGACCGTCCAA+AGG - chr1_4:48473816-48473835 Msa0166870:intron 50.0%
GGTAGGAGTTATCCAAACCC+TGG - chr1_4:48474459-48474478 Msa0166870:intron 50.0%
TTCCACAGGCAGGACATTTG+CGG + chr1_4:48474817-48474836 None:intergenic 50.0%
CTGTCCAAATGCTGTTCCAC+AGG + chr1_4:48474831-48474850 None:intergenic 50.0%
GGTGAAACGCGGGAAGAAAC+AGG + chr1_4:48461349-48461368 None:intergenic 55.0%
AGTAGGGATGGGAATAGGCC+AGG - chr1_4:48461966-48461985 Msa0166870:intron 55.0%
GGCCGTATCAGGCTTTCAGA+AGG - chr1_4:48462450-48462469 Msa0166870:CDS 55.0%
TAAAGCCTAAGCCTGGCCTG+CGG + chr1_4:48462511-48462530 None:intergenic 55.0%
AGGCCTTGCAAAGCCTAGCT+CGG - chr1_4:48462554-48462573 Msa0166870:CDS 55.0%
GTAAGAGACCTGCATCAGCC+TGG + chr1_4:48462897-48462916 None:intergenic 55.0%
GCTCTTCTCGGGATACAAGC+TGG - chr1_4:48463155-48463174 Msa0166870:intron 55.0%
CATCCGGATGACACGAAGGA+AGG + chr1_4:48463352-48463371 None:intergenic 55.0%
AGGAAGCCCTTGCTTTGCGT+CGG - chr1_4:48463447-48463466 Msa0166870:intron 55.0%
!! AAAGAGTGCTGGGCGTAAGG+GGG + chr1_4:48464830-48464849 None:intergenic 55.0%
!! CCCAGCACTCTTTTTGGGCT+TGG - chr1_4:48464837-48464856 Msa0166870:CDS 55.0%
!!! CTCTTTTTGGGCTTGGTGCG+TGG - chr1_4:48464844-48464863 Msa0166870:CDS 55.0%
!! TTTGGGCTTGGTGCGTGGAT+AGG - chr1_4:48464849-48464868 Msa0166870:CDS 55.0%
TTGGTGCGTGGATAGGTAGG+TGG - chr1_4:48464856-48464875 Msa0166870:CDS 55.0%
AAAGGGGAAACCCTTGGAGC+AGG - chr1_4:48465167-48465186 Msa0166870:intron 55.0%
!! TGGCGAGACCTCTAGGACAT+TGG + chr1_4:48465944-48465963 None:intergenic 55.0%
TCCTGAGAAGCCTGCAGACA+GGG - chr1_4:48466240-48466259 Msa0166870:intron 55.0%
!! GGGACGCAAGCTGGTTTGTA+AGG + chr1_4:48467748-48467767 None:intergenic 55.0%
AGGTGGTACTGTCGACCTGT+AGG + chr1_4:48467779-48467798 None:intergenic 55.0%
GTCGACAGTACCACCTCACA+TGG - chr1_4:48467783-48467802 Msa0166870:intron 55.0%
ACGTGAGAGTCCATGTGAGG+TGG + chr1_4:48467796-48467815 None:intergenic 55.0%
!! GGGGGGAGCTGTTTTGTTAC+GGG + chr1_4:48467882-48467901 None:intergenic 55.0%
GGTCTCATGCGATGCATGTG+AGG - chr1_4:48467947-48467966 Msa0166870:intron 55.0%
GTGTATTGGGGGACGCTAAC+CGG - chr1_4:48467969-48467988 Msa0166870:intron 55.0%
TGTATTGGGGGACGCTAACC+GGG - chr1_4:48467970-48467989 Msa0166870:intron 55.0%
TTGTGTGTGACCGACCAGAG+AGG + chr1_4:48468072-48468091 None:intergenic 55.0%
GTCTCACATTGGACGGGGTT+TGG - chr1_4:48468118-48468137 Msa0166870:intron 55.0%
! TTGGTGGGCAGTCATCACTC+AGG - chr1_4:48468160-48468179 Msa0166870:intron 55.0%
!! TGAAAAGAAGCACCCGCCTG+TGG - chr1_4:48469025-48469044 Msa0166870:intron 55.0%
TAAGCACAACAGCCACAGGC+GGG + chr1_4:48469040-48469059 None:intergenic 55.0%
GTAAGCACAACAGCCACAGG+CGG + chr1_4:48469041-48469060 None:intergenic 55.0%
AGGAGGTCAGGGACAATCAG+CGG + chr1_4:48469222-48469241 None:intergenic 55.0%
GGGGATCGAGAATTGGAACC+TGG - chr1_4:48470980-48470999 Msa0166870:intron 55.0%
TGTTGCAGCAAGTGGCTGAG+AGG - chr1_4:48471614-48471633 Msa0166870:intron 55.0%
GTTGCAGCAAGTGGCTGAGA+GGG - chr1_4:48471615-48471634 Msa0166870:intron 55.0%
ACATCTGCAGGAGTTGGGCA+TGG + chr1_4:48471718-48471737 None:intergenic 55.0%
AGTAGGGGGCTAAGTAGCAG+AGG + chr1_4:48472478-48472497 None:intergenic 55.0%
! CCACCTGGCAAACTCTAAGG+CGG + chr1_4:48472636-48472655 None:intergenic 55.0%
CGCCTTAGAGTTTGCCAGGT+GGG - chr1_4:48472634-48472653 Msa0166870:intron 55.0%
AGCATCAGCCAATTCCCACC+TGG + chr1_4:48472651-48472670 None:intergenic 55.0%
GTCTTGGAGCTCAAGAACCG+TGG - chr1_4:48472984-48473003 Msa0166870:intron 55.0%
CTGTTCTGACCGTCCAAAGG+AGG - chr1_4:48473819-48473838 Msa0166870:intron 55.0%
AGGCAGGACATTTGCGGTGA+CGG + chr1_4:48474811-48474830 None:intergenic 55.0%
CCAAATGCTGTTCCACAGGC+AGG + chr1_4:48474827-48474846 None:intergenic 55.0%
CCTGCCTGTGGAACAGCATT+TGG - chr1_4:48474824-48474843 Msa0166870:intron 55.0%
TCATAGGCTAGGCCGTAGGC+CGG + chr1_4:48461992-48462011 None:intergenic 60.0%
CCTGTCATAGGCTAGGCCGT+AGG + chr1_4:48461996-48462015 None:intergenic 60.0%
CCTACGGCCTAGCCTATGAC+AGG - chr1_4:48461993-48462012 Msa0166870:intron 60.0%
GGCCTAGCCTATGACAGGTC+AGG - chr1_4:48461998-48462017 Msa0166870:intron 60.0%
GGCCTGACCTGTCATAGGCT+AGG + chr1_4:48462003-48462022 None:intergenic 60.0%
AGCCTATGACAGGTCAGGCC+AGG - chr1_4:48462003-48462022 Msa0166870:intron 60.0%
ACAGGCTAGCAGGCCGTATC+AGG - chr1_4:48462439-48462458 Msa0166870:intron 60.0%
GGCTTTGCAAGGCCTAAGCC+TGG + chr1_4:48462549-48462568 None:intergenic 60.0%
AGGCCGAGCTAGGCTTTGCA+AGG + chr1_4:48462560-48462579 None:intergenic 60.0%
GGAATAGGCTAGGCCGAGCT+AGG + chr1_4:48462570-48462589 None:intergenic 60.0%
GAGACCTGCATCAGCCTGGA+CGG + chr1_4:48462893-48462912 None:intergenic 60.0%
CTCGGGATACAAGCTGGGAG+AGG - chr1_4:48463161-48463180 Msa0166870:intron 60.0%
! GGGCGTAAGGGGGGTGTATT+AGG + chr1_4:48464820-48464839 None:intergenic 60.0%
!! AAGAGTGCTGGGCGTAAGGG+GGG + chr1_4:48464829-48464848 None:intergenic 60.0%
!! GGCTTGGTGCGTGGATAGGT+AGG - chr1_4:48464853-48464872 Msa0166870:CDS 60.0%
CAGTCTGGTTGAACCCCGGT+TGG - chr1_4:48465825-48465844 Msa0166870:intron 60.0%
CTCCTGAGAAGCCTGCAGAC+AGG - chr1_4:48466239-48466258 Msa0166870:intron 60.0%
AAGCCTGCAGACAGGGCCAT+GGG - chr1_4:48466247-48466266 Msa0166870:intron 60.0%
AAACCCATGGCCCTGTCTGC+AGG + chr1_4:48466253-48466272 None:intergenic 60.0%
!! AATGGGGATGATGGACGCGC+AGG - chr1_4:48467118-48467137 Msa0166870:intron 60.0%
GAGCTATTGGGGACGCAAGC+TGG + chr1_4:48467757-48467776 None:intergenic 60.0%
GCGTCCCCAATAGCTCCTAC+AGG - chr1_4:48467761-48467780 Msa0166870:intron 60.0%
GAAGCCAAGAAGGGGGTCGA+TGG - chr1_4:48470918-48470937 Msa0166870:intron 60.0%
AGTGCCATCGACCCCCTTCT+TGG + chr1_4:48470925-48470944 None:intergenic 60.0%
!! CAAACTCTAAGGCGGCTGCG+AGG + chr1_4:48472628-48472647 None:intergenic 60.0%
CAGCCGCCTTAGAGTTTGCC+AGG - chr1_4:48472630-48472649 Msa0166870:intron 60.0%
CCGCCTTAGAGTTTGCCAGG+TGG - chr1_4:48472633-48472652 Msa0166870:intron 60.0%
CACCGCAAATGTCCTGCCTG+TGG - chr1_4:48474812-48474831 Msa0166870:intron 60.0%
GGGATGGGAATAGGCCAGGC+CGG - chr1_4:48461970-48461989 Msa0166870:intron 65.0%
GAATAGGCCAGGCCGGCCTA+CGG - chr1_4:48461977-48461996 Msa0166870:intron 65.0%
GGCCTGGCCTGACCTGTCAT+AGG + chr1_4:48462008-48462027 None:intergenic 65.0%
ATGACAGGTCAGGCCAGGCC+AGG - chr1_4:48462008-48462027 Msa0166870:intron 65.0%
GTAGGCCTATGACAGGCCGC+AGG - chr1_4:48462492-48462511 Msa0166870:CDS 65.0%
TGCTCCGTCCAGGCTGATGC+AGG - chr1_4:48462886-48462905 Msa0166870:intron 65.0%
TCCTAGAGGTCTCGCCACGC+CGG - chr1_4:48465947-48465966 Msa0166870:intron 65.0%
GCCCTGTCTGCAGGCTTCTC+AGG + chr1_4:48466244-48466263 None:intergenic 65.0%
GAAGCCTGCAGACAGGGCCA+TGG - chr1_4:48466246-48466265 Msa0166870:intron 65.0%
TGGACGCGCAGGTGAAGCGA+TGG - chr1_4:48467129-48467148 Msa0166870:intron 65.0%
TCTGTTGGGGCCCCCGCTAT+CGG - chr1_4:48468045-48468064 Msa0166870:intron 65.0%
ACCAGAGAGGCCCGATAGCG+GGG + chr1_4:48468059-48468078 None:intergenic 65.0%
GACCAGAGAGGCCCGATAGC+GGG + chr1_4:48468060-48468079 None:intergenic 65.0%
CGACCAGAGAGGCCCGATAG+CGG + chr1_4:48468061-48468080 None:intergenic 65.0%
CGCTATCGGGCCTCTCTGGT+CGG - chr1_4:48468059-48468078 Msa0166870:intron 65.0%
CCTGGCCTGCGGCCTGTCAT+AGG + chr1_4:48462500-48462519 None:intergenic 70.0%
CCTATGACAGGCCGCAGGCC+AGG - chr1_4:48462497-48462516 Msa0166870:CDS 70.0%
ACAGGCCGCAGGCCAGGCTT+AGG - chr1_4:48462503-48462522 Msa0166870:CDS 70.0%
ACCGGCGTGGCGAGACCTCT+AGG + chr1_4:48465951-48465970 None:intergenic 70.0%
GGGGGACGCTAACCGGGCAA+TGG - chr1_4:48467976-48467995 Msa0166870:intron 70.0%
CTGTTGGGGCCCCCGCTATC+GGG - chr1_4:48468046-48468065 Msa0166870:intron 70.0%
! CCAGAGAGGCCCGATAGCGG+GGG + chr1_4:48468058-48468077 None:intergenic 70.0%
CCCCCGCTATCGGGCCTCTC+TGG - chr1_4:48468055-48468074 Msa0166870:intron 75.0%
! GGCTAGGCCGTAGGCCGGCC+TGG + chr1_4:48461987-48462006 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 48461172 48475117 48461172 ID=Msa0166870;Name=Msa0166870
chr1_4 mRNA 48461172 48475117 48461172 ID=Msa0166870-mRNA-1;Parent=Msa0166870;Name=Msa0166870-mRNA-1;_AED=0.14;_eAED=0.14;_QI=120|1|1|1|0.94|0.89|19|240|880
chr1_4 exon 48461172 48461543 48461172 ID=Msa0166870-mRNA-1:exon:14117;Parent=Msa0166870-mRNA-1
chr1_4 exon 48462449 48462611 48462449 ID=Msa0166870-mRNA-1:exon:14116;Parent=Msa0166870-mRNA-1
chr1_4 exon 48463512 48463714 48463512 ID=Msa0166870-mRNA-1:exon:14115;Parent=Msa0166870-mRNA-1
chr1_4 exon 48463824 48463961 48463824 ID=Msa0166870-mRNA-1:exon:14114;Parent=Msa0166870-mRNA-1
chr1_4 exon 48464635 48464721 48464635 ID=Msa0166870-mRNA-1:exon:14113;Parent=Msa0166870-mRNA-1
chr1_4 exon 48464831 48464903 48464831 ID=Msa0166870-mRNA-1:exon:14112;Parent=Msa0166870-mRNA-1
chr1_4 exon 48466427 48466618 48466427 ID=Msa0166870-mRNA-1:exon:14111;Parent=Msa0166870-mRNA-1
chr1_4 exon 48467385 48467461 48467385 ID=Msa0166870-mRNA-1:exon:14110;Parent=Msa0166870-mRNA-1
chr1_4 exon 48467803 48467874 48467803 ID=Msa0166870-mRNA-1:exon:14109;Parent=Msa0166870-mRNA-1
chr1_4 exon 48469066 48469226 48469066 ID=Msa0166870-mRNA-1:exon:14108;Parent=Msa0166870-mRNA-1
chr1_4 exon 48469310 48469496 48469310 ID=Msa0166870-mRNA-1:exon:14107;Parent=Msa0166870-mRNA-1
chr1_4 exon 48469585 48469704 48469585 ID=Msa0166870-mRNA-1:exon:14106;Parent=Msa0166870-mRNA-1
chr1_4 exon 48469814 48469897 48469814 ID=Msa0166870-mRNA-1:exon:14105;Parent=Msa0166870-mRNA-1
chr1_4 exon 48469983 48470176 48469983 ID=Msa0166870-mRNA-1:exon:14104;Parent=Msa0166870-mRNA-1
chr1_4 exon 48472384 48472551 48472384 ID=Msa0166870-mRNA-1:exon:14103;Parent=Msa0166870-mRNA-1
chr1_4 exon 48472714 48472944 48472714 ID=Msa0166870-mRNA-1:exon:14102;Parent=Msa0166870-mRNA-1
chr1_4 exon 48473062 48473149 48473062 ID=Msa0166870-mRNA-1:exon:14101;Parent=Msa0166870-mRNA-1
chr1_4 exon 48473230 48473391 48473230 ID=Msa0166870-mRNA-1:exon:14100;Parent=Msa0166870-mRNA-1
chr1_4 exon 48474887 48475117 48474887 ID=Msa0166870-mRNA-1:exon:14099;Parent=Msa0166870-mRNA-1
chr1_4 five_prime_UTR 48474998 48475117 48474998 ID=Msa0166870-mRNA-1:five_prime_utr;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48474887 48474997 48474887 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48473230 48473391 48473230 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48473062 48473149 48473062 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48472714 48472944 48472714 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48472384 48472551 48472384 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48469983 48470176 48469983 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48469814 48469897 48469814 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48469585 48469704 48469585 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48469310 48469496 48469310 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48469066 48469226 48469066 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48467803 48467874 48467803 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48467385 48467461 48467385 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48466427 48466618 48466427 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48464831 48464903 48464831 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48464635 48464721 48464635 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48463824 48463961 48463824 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48463512 48463714 48463512 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48462449 48462611 48462449 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 CDS 48461412 48461543 48461412 ID=Msa0166870-mRNA-1:cds;Parent=Msa0166870-mRNA-1
chr1_4 three_prime_UTR 48461172 48461411 48461172 ID=Msa0166870-mRNA-1:three_prime_utr;Parent=Msa0166870-mRNA-1
Gene Sequence

>Msa0166870

ATGGAAAATTCAGACCACGACGAACCCAACAACAAGAAGCCTCATCTTCTCACTCCTGTTTCTTCCCGCGTTTCACCAAATTCAACCAACCATTCTCCTAACAGCAAAAATGCTGATGCAGGTCTCTTACAGCTCCAGAATCAGCAGCTTGTTCAGCAGACAGAAACGCAGAAACACGCTTTACAGGATCTTGAAGAAAAGACTAGAGAATTAAAAGAAAGACAAAATTCATACGATGACATATTAATTGCAATCAACCAACACTGGGATCAGTTGGTTGATGATATGGCTCTTCTCGGGATACAAGCTGGGAGAGGCAAAGATTCTTTGGAAACTTTGGATTACCTCGATAATCCACAAGGTTCCCTTCCTTCGTGTCATCCGGATGATCTACTTCTATGTAGATTAATCCAGAAAGATTCTATTGAGGGAAGCAGTAATGATGAGATTACTAATTATGTTGAGGAAGCCCTTGCTTTGCGTCGGTTATCTACTACGGAGTTGTTGAAACTCATTCAAGATACCGTTGATGATCAGATGGAAAGAATTGAGGATATAGGTCAGGTTTTACACGGAGATTTATCCACAGAAGATGTTATCATCCAAATGTCTAAGATTGATGATATGACGAAAAAGGAGGCCGACAATTTTCGTGAAGTGATTGATACTCTCCATGCAAAACACAAGGAGTATACTGTTGGTATTCAGAATTATATAAACGAGTGCTCGCGAGATCAATCTGACATTAAACGCCTTACAGGAGAGCTTGACGAGATTGTGGCTGAACTCGAAGAGAGTAGAAGAAAAATAGTGAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCCAATGCTGATTCAGTGAATGGAAACTTGTCTCCTGAGAAGCCTGCAGACAGGGCCATGGGTTTGTCCGAGTTGAAGCATTCAATTGAGGAAGCCAAGATCGTGAATGCTGATCGTCTTTCTGAGCTCCAAGATGCACGGGAAGAAAATCAAATATTGACAAAGAAATTCCAAGAACTTCAGAATGAACTAAATGATGATAAGTATGTACGCAATTCCCGAGTATACTCTTTGGCAAATGATCAACTTCAACATTGGATTGCTGAATTGGACAGATATAAATCATTGGCAGAGTCTCTGCAGGCTGGCAGGGTTAACGTCTCAAAACGGGAGAAGGAGTTGAAGTTGAAATTGGAGTCTGCTGTTAATGCAAGGCATATCCATGACAATTCTGACTCTAGGATTGATGAGCTCAAGCTTCAATTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTACGATGGAAGAGGCCAAACAGGATACTGGGAGAAAAGATATCAAAGCCGAGTTTCGTGTGATGGCTTCAGCTTTATCTAAAGAAATGGGGATGATGGACGCGCAGGTGAAGCGATGGAAAGATGCAGCTCTTGAAGCTGTATCATTACGTGAGAAAGCGCATTCACTAAGAGCAACATTGAGTGGAAAGACAAGCGAACTCAAGAGCCTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATGAAGTCTACAAAAGCATTGATTGAAAAGTTACAGGAGGAGAATCGGGAGTTAGAATTTGTTTTGGATATGTATGGCCTAGAAGATTATCAGAAAAGCTTGCCAGAAGTTAGAGAATCTGAAAGGAAAGCTCGCTCTCAAGCTGAAATGCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTGCTGCTGCAGAAGCTGAACTAGAGGAGTTAAGGGCCCAGTTTGATGAAAATGAAAGAAAAAATCTGGAGATGACTGAGGCTATTAAAGTTAAAGAGGCTGAGGCAATAACCTATATATCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAAGTGGCTGAGAGGGATGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAATTACATAGCACTTTACTGTCTGAACAGCAAGCCTTAGCTGATCAACTTCAACAGATTAATTCTTTGATAGAAAATTCAAAGATGAAGATTGTAAATAGTGAAAAACAGATCGAATGCCTTCTATCAGAAGCCGCTAAATGTACTCAAGATGAAAAACACCTCGCAGCCGCCTTAGAGTTTGCCAGGTGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTGTTGCTTCAGCTTCAGAGAAAGAGTACGACCAAATTCAGAAAGATGTGGAAGCTTGTGAAAAGGAATTGGACAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGATGAACTAATGCAAGTGAACAACCAAATTGCTGAGCTGAATTCTGAAGGCAGAAAAACTGCAGTACAACAACTTGAAGAAGAAATAAGAGTTTGTAAGAACATGATCAAGTGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTGTGAAGTGCTATCATCTGTTCTGCAATCCATGTATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGCGATGTTCGTTTTGTTAAAATATGA
Protein sequence

>Msa0166870

MENSDHDEPNNKKPHLLTPVSSRVSPNSTNHSPNSKNADAGLLQLQNQQLVQQTETQKHALQDLEEKTRELKERQNSYDDILIAINQHWDQLVDDMALLGIQAGRGKDSLETLDYLDNPQGSLPSCHPDDLLLCRLIQKDSIEGSSNDEITNYVEEALALRRLSTTELLKLIQDTVDDQMERIEDIGQVLHGDLSTEDVIIQMSKIDDMTKKEADNFREVIDTLHAKHKEYTVGIQNYINECSRDQSDIKRLTGELDEIVAELEESRRKIVSLKMQKDAAMGMNSSNADSVNGNLSPEKPADRAMGLSELKHSIEEAKIVNADRLSELQDAREENQILTKKFQELQNELNDDKYVRNSRVYSLANDQLQHWIAELDRYKSLAESLQAGRVNVSKREKELKLKLESAVNARHIHDNSDSRIDELKLQLQKCIIEKNDLEITMEEAKQDTGRKDIKAEFRVMASALSKEMGMMDAQVKRWKDAALEAVSLREKAHSLRATLSGKTSELKSLANKCAEQVLEMKSTKALIEKLQEENRELEFVLDMYGLEDYQKSLPEVRESERKARSQAEMLKNALDEHGLELRVRAANEAEAACEQRLAAAEAELEELRAQFDENERKNLEMTEAIKVKEAEAITYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSTLLSEQQALADQLQQINSLIENSKMKIVNSEKQIECLLSEAAKCTQDEKHLAAALEFARWELADAEKELKLLKSVASASEKEYDQIQKDVEACEKELDSERSSRKKLEDELMQVNNQIAELNSEGRKTAVQQLEEEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI*