AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0122590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122590 MtrunA17_Chr1g0182391 97.380 229 6 0 6 234 387 615 6.87e-151 441
Msa0122590 MtrunA17_Chr5g0438781 84.716 229 35 0 6 234 387 615 1.11e-117 355
Msa0122590 MtrunA17_Chr7g0232251 35.500 200 128 1 35 233 411 610 5.11e-32 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122590 AT1G55250.5 53.913 230 105 1 6 234 387 616 1.51e-63 212
Msa0122590 AT1G55250.1 53.913 230 105 1 6 234 406 635 2.45e-63 212
Msa0122590 AT1G55250.3 52.991 234 105 3 6 234 387 620 4.43e-60 203
Msa0122590 AT2G44950.2 35.000 220 142 1 14 232 391 610 6.96e-29 114
Msa0122590 AT2G44950.1 35.000 220 142 1 14 232 391 610 9.23e-29 114
Msa0122590 AT1G55250.2 52.174 115 54 1 121 234 4 118 4.94e-25 101
Msa0122590 AT1G55250.4 52.174 115 54 1 121 234 4 118 5.97e-25 101

Find 39 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGAGTTGAAGTTGAAAT+TGG 0.231877 1_3:+49350387 Msa0122590:CDS
CAAATGTGCTGAACAGGTTT+TGG 0.250460 1_3:+49351508 Msa0122590:CDS
GTTACAGATTGAAAAGTTAC+AGG 0.298097 1_3:+49351888 Msa0122590:intron
CTTTCAGATTCTCTAACTTC+TGG 0.330016 1_3:-49352741 None:intergenic
TCGGGAGTTAGAATTTGTTT+TGG 0.337092 1_3:+49351918 Msa0122590:CDS
TTCAGCTTTATCTAAAGAAA+TGG 0.347729 1_3:+49350665 Msa0122590:CDS
AAGCTGAACTAGAGGAGTTA+AGG 0.349863 1_3:+49352883 Msa0122590:CDS
TCAGCTTTATCTAAAGAAAT+GGG 0.360839 1_3:+49350666 Msa0122590:CDS
TGCAAACAAATGTGCTGAAC+AGG 0.371578 1_3:+49351502 Msa0122590:CDS
TACGATGGAAGAGGCCAAAC+AGG 0.408232 1_3:+49350516 Msa0122590:CDS
AGCTGAACTAGAGGAGTTAA+GGG 0.411687 1_3:+49352884 Msa0122590:CDS
AAAAGTTACAGGAGGAGAAT+CGG 0.444664 1_3:+49351899 Msa0122590:CDS
ATCTAAAGAAATGGGGATGA+TGG 0.472663 1_3:+49350674 Msa0122590:CDS
ACGCAGACCAGTATCCTGTT+TGG 0.480102 1_3:-49350530 None:intergenic
CAGGGTTAACGTCTCAAAAC+GGG 0.481009 1_3:+49350363 Msa0122590:CDS
GAAGAGGCCAAACAGGATAC+TGG 0.487514 1_3:+49350523 Msa0122590:CDS
CCCAGTTTGATGAAAATGAA+AGG 0.491792 1_3:+49352907 Msa0122590:CDS
GCCTAGAAGATTATCAGAAA+AGG 0.494202 1_3:+49351950 Msa0122590:CDS
AAAGTTACAGGAGGAGAATC+GGG 0.500243 1_3:+49351900 Msa0122590:CDS
GCAGGGTTAACGTCTCAAAA+CGG 0.509035 1_3:+49350362 Msa0122590:CDS
GTTCAGCACATTTGTTTGCA+AGG 0.516708 1_3:-49351499 None:intergenic
CAAAGCCGAGTTTCGTGTGA+TGG 0.522522 1_3:+49350641 Msa0122590:CDS
TCCATGACAATTCTGACTCT+AGG 0.530871 1_3:+49350434 Msa0122590:CDS
AATGAAGTCTACAAAAGCAT+TGG 0.533686 1_3:+49351532 Msa0122590:CDS
TGAAGCCATCACACGAAACT+CGG 0.548398 1_3:-49350646 None:intergenic
TCCTAGAGTCAGAATTGTCA+TGG 0.550226 1_3:-49350435 None:intergenic
CTGAAGCTGCTTGTGAACAA+AGG 0.572664 1_3:+49352847 Msa0122590:CDS
TAACGTCTCAAAACGGGAGA+AGG 0.575407 1_3:+49350369 Msa0122590:CDS
TCTTGAAATTACGATGGAAG+AGG 0.580999 1_3:+49350507 Msa0122590:CDS
TCACTAAGAGCAACATTGAG+TGG 0.584786 1_3:+49350762 Msa0122590:CDS
TGGACGCGCAGGTGAAGCGA+TGG 0.595204 1_3:+49350694 Msa0122590:CDS
CAGCTTTATCTAAAGAAATG+GGG 0.599897 1_3:+49350667 Msa0122590:CDS
AATGGGGATGATGGACGCGC+AGG 0.601054 1_3:+49350683 Msa0122590:CDS
CAGAAGTTAGAGAATCTGAA+AGG 0.612893 1_3:+49352742 Msa0122590:CDS
AAGAGCAACATTGAGTGGAA+AGG 0.617926 1_3:+49350767 Msa0122590:CDS
TGGAGTCTGCTGTTAATGCA+AGG 0.625436 1_3:+49350407 Msa0122590:CDS
TGCTGCAGAAGCTGAACTAG+AGG 0.629556 1_3:+49352875 Msa0122590:CDS
GAATGATCTTGAAATTACGA+TGG 0.643737 1_3:+49350501 Msa0122590:CDS
ACAGATTGAAAAGTTACAGG+AGG 0.653733 1_3:+49351891 Msa0122590:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAACAAGAAA+GGG - chr1_3:49349379-49349398 None:intergenic 10.0%
!! AAAAAAAAAAAAAACAAGAA+AGG - chr1_3:49349380-49349399 None:intergenic 10.0%
!! TAATAACAATAATATAAGAA+TGG - chr1_3:49349513-49349532 None:intergenic 10.0%
!! NNNNNNNAGATATAAATCAT+TGG + chr1_3:49350232-49350251 Msa0122590:intron 10.0%
!!! AGAAATTTTTTGATAAGATA+AGG - chr1_3:49349280-49349299 None:intergenic 15.0%
!! AAAACATATTTATAATTGGT+GGG + chr1_3:49351210-49351229 Msa0122590:intron 15.0%
!! TAATTAACTCTTAGAATTTA+GGG - chr1_3:49351290-49351309 None:intergenic 15.0%
!! ATTAAATTTAATCTCAAATG+AGG - chr1_3:49351647-49351666 None:intergenic 15.0%
!! TTAACATCTAACATAAAATT+TGG - chr1_3:49352130-49352149 None:intergenic 15.0%
!!! TTTTATCTCCCTATAAATAA+GGG - chr1_3:49349211-49349230 None:intergenic 20.0%
!!! TTTTTATCTCCCTATAAATA+AGG - chr1_3:49349212-49349231 None:intergenic 20.0%
!! ATAAGAATGGAAAAGTAAAA+GGG - chr1_3:49349500-49349519 None:intergenic 20.0%
!! TATAAGAATGGAAAAGTAAA+AGG - chr1_3:49349501-49349520 None:intergenic 20.0%
!!! TTAAATTTTTGGATGTTACA+AGG + chr1_3:49349572-49349591 Msa0122590:intron 20.0%
!!! TTCTTTTCAAATGCAATTTT+AGG + chr1_3:49350336-49350355 Msa0122590:intron 20.0%
!!! CCAATTATAAATATGTTTTC+AGG - chr1_3:49351209-49351228 None:intergenic 20.0%
!! CCTGAAAACATATTTATAAT+TGG + chr1_3:49351206-49351225 Msa0122590:intron 20.0%
!! GAAAACATATTTATAATTGG+TGG + chr1_3:49351209-49351228 Msa0122590:intron 20.0%
!! GTAATTAACTCTTAGAATTT+AGG - chr1_3:49351291-49351310 None:intergenic 20.0%
!!! TAATGCTTAAAAAGTATGTA+TGG - chr1_3:49351432-49351451 None:intergenic 20.0%
!!! TACATACTTTTTAAGCATTA+AGG + chr1_3:49351432-49351451 Msa0122590:intron 20.0%
!! ATTATTTGTTTATACAACAG+AGG - chr1_3:49351609-49351628 None:intergenic 20.0%
!!! TATATGCATTATGATTTTAG+TGG + chr1_3:49351815-49351834 Msa0122590:intron 20.0%
!! AAGTGGTACATAAAATAATT+AGG - chr1_3:49352373-49352392 None:intergenic 20.0%
!!! AATGAATTTTAAAGGAATAG+TGG - chr1_3:49352417-49352436 None:intergenic 20.0%
!!! AAAAGGCAAATGAATTTTAA+AGG - chr1_3:49352425-49352444 None:intergenic 20.0%
!! GCTTAACTATTTAAAAAGTT+GGG - chr1_3:49352638-49352657 None:intergenic 20.0%
!! GCAATAAAACATTTATCATA+AGG - chr1_3:49352660-49352679 None:intergenic 20.0%
!!! GATAAATGTTTTATTGCATT+TGG + chr1_3:49352663-49352682 Msa0122590:intron 20.0%
!!! ATTGTTTTGTTTGAAAGTGA+AGG + chr1_3:49348977-49348996 Msa0122590:intron 25.0%
!! TAACTAAAGCCCTTATTTAT+AGG + chr1_3:49349199-49349218 Msa0122590:intron 25.0%
!! AACTAAAGCCCTTATTTATA+GGG + chr1_3:49349200-49349219 Msa0122590:intron 25.0%
!!! GTGCAGATATTTTAAATTGA+AGG - chr1_3:49349246-49349265 None:intergenic 25.0%
!! TTTTTGATAAGATAAGGAGA+AGG - chr1_3:49349274-49349293 None:intergenic 25.0%
! ATATATATATTGAGAACGTG+AGG + chr1_3:49349343-49349362 Msa0122590:intron 25.0%
!!! AAAAACTTGTTAAGTAACGT+GGG + chr1_3:49349408-49349427 Msa0122590:intron 25.0%
! TAAGAATGGAAAAGTAAAAG+GGG - chr1_3:49349499-49349518 None:intergenic 25.0%
! TGTTTGATATTATGATACCA+AGG + chr1_3:49349923-49349942 Msa0122590:intron 25.0%
!! TTACACCGTTAAATTTTTCA+GGG + chr1_3:49350607-49350626 Msa0122590:intron 25.0%
! TTTCTCCCTGAAAAATTTAA+CGG - chr1_3:49350615-49350634 None:intergenic 25.0%
!! TTCAGCTTTATCTAAAGAAA+TGG + chr1_3:49350665-49350684 Msa0122590:CDS 25.0%
!! TCAGCTTTATCTAAAGAAAT+GGG + chr1_3:49350666-49350685 Msa0122590:CDS 25.0%
! TAAAAGACTTATCACTAAGT+AGG - chr1_3:49350829-49350848 None:intergenic 25.0%
!! CTTTTACTTAGTATAGAAGT+TGG + chr1_3:49350898-49350917 Msa0122590:intron 25.0%
! CTAATAGCATCTTAGAATTT+GGG - chr1_3:49351081-49351100 None:intergenic 25.0%
! TCTAATAGCATCTTAGAATT+TGG - chr1_3:49351082-49351101 None:intergenic 25.0%
! CTAAGAGTTAATTACTAAAC+TGG + chr1_3:49351296-49351315 Msa0122590:intron 25.0%
! TGAAGTCATTAAATTCAAAG+AGG - chr1_3:49351343-49351362 None:intergenic 25.0%
! TATATACTGCAAGAGTTTAT+AGG + chr1_3:49351382-49351401 Msa0122590:intron 25.0%
! TTAATCTCAAATGAGGAAAA+TGG - chr1_3:49351640-49351659 None:intergenic 25.0%
! CATATAATGTTTGAGAATCA+TGG - chr1_3:49351801-49351820 None:intergenic 25.0%
! TTAGTTATAGACAATCTTGA+AGG - chr1_3:49351841-49351860 None:intergenic 25.0%
! AACAAAACATCTTAATGAGT+TGG - chr1_3:49351871-49351890 None:intergenic 25.0%
!!! GAATTTGTTTTGGATATGTA+TGG + chr1_3:49351928-49351947 Msa0122590:CDS 25.0%
!! TTGTTATTCTATGTTGTGTT+TGG + chr1_3:49352035-49352054 Msa0122590:intron 25.0%
! TGTTATTCTATGTTGTGTTT+GGG + chr1_3:49352036-49352055 Msa0122590:intron 25.0%
! CTTACTACAGCAAATTAATT+CGG - chr1_3:49352069-49352088 None:intergenic 25.0%
! CTATAATTACGTTCTTGAAA+AGG - chr1_3:49352442-49352461 None:intergenic 25.0%
!! TCTCTACATATTTTCATTGA+TGG + chr1_3:49352610-49352629 Msa0122590:intron 25.0%
! GGCTTAACTATTTAAAAAGT+TGG - chr1_3:49352639-49352658 None:intergenic 25.0%
!! AAAAATGCTTTAGATGAACA+TGG + chr1_3:49352792-49352811 Msa0122590:CDS 25.0%
! TCTTGTTTGTATTCTTGTAC+TGG - chr1_3:49349060-49349079 None:intergenic 30.0%
AAAAAAAAACAAGAAAGGGC+TGG - chr1_3:49349375-49349394 None:intergenic 30.0%
!! GAAAAACTTGTTAAGTAACG+TGG + chr1_3:49349407-49349426 Msa0122590:intron 30.0%
!! AAAACTTGTTAAGTAACGTG+GGG + chr1_3:49349409-49349428 Msa0122590:intron 30.0%
AAGAATGGAAAAGTAAAAGG+GGG - chr1_3:49349498-49349517 None:intergenic 30.0%
CAGCATAAATTTGACATTTG+TGG + chr1_3:49349609-49349628 Msa0122590:intron 30.0%
TCTTAACAATTTCCTTGACA+TGG + chr1_3:49349688-49349707 Msa0122590:intron 30.0%
ATACAAGAGGAATTATGACA+TGG - chr1_3:49349804-49349823 None:intergenic 30.0%
TGTCATAATTCCTCTTGTAT+AGG + chr1_3:49349804-49349823 Msa0122590:intron 30.0%
!! TAAAAAGACTTTGAGACGAT+GGG - chr1_3:49349858-49349877 None:intergenic 30.0%
!! ATAAAAAGACTTTGAGACGA+TGG - chr1_3:49349859-49349878 None:intergenic 30.0%
TTCAATAGTAAACACATGAG+CGG + chr1_3:49349988-49350007 Msa0122590:intron 30.0%
! TTTCAAATGCAATTTTAGGC+TGG + chr1_3:49350340-49350359 Msa0122590:intron 30.0%
GAATGATCTTGAAATTACGA+TGG + chr1_3:49350501-49350520 Msa0122590:CDS 30.0%
! CTTACACCGTTAAATTTTTC+AGG + chr1_3:49350606-49350625 Msa0122590:intron 30.0%
! CAGCTTTATCTAAAGAAATG+GGG + chr1_3:49350667-49350686 Msa0122590:CDS 30.0%
AGGCGATAAAGAAAATGAAA+GGG - chr1_3:49350809-49350828 None:intergenic 30.0%
TAGGCGATAAAGAAAATGAA+AGG - chr1_3:49350810-49350829 None:intergenic 30.0%
AAAAAGATAGTAAGAGTTGG+GGG - chr1_3:49350965-49350984 None:intergenic 30.0%
CAAAAAGATAGTAAGAGTTG+GGG - chr1_3:49350966-49350985 None:intergenic 30.0%
GCAAAAAGATAGTAAGAGTT+GGG - chr1_3:49350967-49350986 None:intergenic 30.0%
! AACTCTTACTATCTTTTTGC+CGG + chr1_3:49350967-49350986 Msa0122590:intron 30.0%
! TATTAGAGTCTAAGATCTGT+TGG + chr1_3:49351095-49351114 Msa0122590:intron 30.0%
! ATTAGAGTCTAAGATCTGTT+GGG + chr1_3:49351096-49351115 Msa0122590:intron 30.0%
! TAACTCTTAGAATTTAGGGT+GGG - chr1_3:49351286-49351305 None:intergenic 30.0%
TTAACTCTTAGAATTTAGGG+TGG - chr1_3:49351287-49351306 None:intergenic 30.0%
! AATGAAGTCTACAAAAGCAT+TGG + chr1_3:49351532-49351551 Msa0122590:CDS 30.0%
ACAAGCAAAACACAAAACAA+AGG - chr1_3:49351759-49351778 None:intergenic 30.0%
! TTGAGAATCATGGAAAGTAT+AGG - chr1_3:49351791-49351810 None:intergenic 30.0%
GTTACAGATTGAAAAGTTAC+AGG + chr1_3:49351888-49351907 Msa0122590:intron 30.0%
! ACCTTTTCTGATAATCTTCT+AGG - chr1_3:49351954-49351973 None:intergenic 30.0%
!! AATCAGCGGATTTTAAACAT+GGG - chr1_3:49352275-49352294 None:intergenic 30.0%
TATTCTAATCTATTCTCCCT+TGG + chr1_3:49352522-49352541 Msa0122590:intron 30.0%
TTTGTTTGAAAGTGAAGGTG+TGG + chr1_3:49348982-49349001 Msa0122590:intron 35.0%
TGAGAGAGAAAGTTGAGAAA+AGG + chr1_3:49349102-49349121 Msa0122590:intron 35.0%
GAGAAAGTTGAGAAAAGGAA+AGG + chr1_3:49349107-49349126 Msa0122590:intron 35.0%
! TCTTCTCTCTAAGAAAAACC+AGG - chr1_3:49349154-49349173 None:intergenic 35.0%
AGAATGGAAAAGTAAAAGGG+GGG - chr1_3:49349497-49349516 None:intergenic 35.0%
TCAAGGAAATTGTTAAGAGC+CGG - chr1_3:49349686-49349705 None:intergenic 35.0%
! ATGTACATGACGGTACTTTT+GGG - chr1_3:49349733-49349752 None:intergenic 35.0%
TTGATGCATGATGTACATGA+CGG - chr1_3:49349743-49349762 None:intergenic 35.0%
GTCTATCAACACACTTCAAT+AGG + chr1_3:49349777-49349796 Msa0122590:intron 35.0%
! GTCTCAAAGTCTTTTTATCC+CGG + chr1_3:49349861-49349880 Msa0122590:intron 35.0%
TCAATAGTAAACACATGAGC+GGG + chr1_3:49349989-49350008 Msa0122590:intron 35.0%
ATGTTACAACCATATTCCTC+GGG - chr1_3:49350116-49350135 None:intergenic 35.0%
GATGTTACAACCATATTCCT+CGG - chr1_3:49350117-49350136 None:intergenic 35.0%
GAAGGAGTTGAAGTTGAAAT+TGG + chr1_3:49350387-49350406 Msa0122590:CDS 35.0%
TCTTGAAATTACGATGGAAG+AGG + chr1_3:49350507-49350526 Msa0122590:CDS 35.0%
ATATTTGCAGCGTGTATGTT+TGG + chr1_3:49350571-49350590 Msa0122590:intron 35.0%
TTAACGGTGTAAGAAACGAA+GGG - chr1_3:49350599-49350618 None:intergenic 35.0%
TTTAACGGTGTAAGAAACGA+AGG - chr1_3:49350600-49350619 None:intergenic 35.0%
ATCTAAAGAAATGGGGATGA+TGG + chr1_3:49350674-49350693 Msa0122590:CDS 35.0%
AAAAGATAGTAAGAGTTGGG+GGG - chr1_3:49350964-49350983 None:intergenic 35.0%
GGCAAAAAGATAGTAAGAGT+TGG - chr1_3:49350968-49350987 None:intergenic 35.0%
! ACTCTTACTATCTTTTTGCC+GGG + chr1_3:49350968-49350987 Msa0122590:intron 35.0%
! TTAGAGTCTAAGATCTGTTG+GGG + chr1_3:49351097-49351116 Msa0122590:intron 35.0%
!! TTCAAAAGCCGGTTTTGTAA+GGG + chr1_3:49351250-49351269 Msa0122590:intron 35.0%
TAACTCAACCCTTACAAAAC+CGG - chr1_3:49351261-49351280 None:intergenic 35.0%
AATGACTTCACAAATCGTGT+TGG + chr1_3:49351353-49351372 Msa0122590:intron 35.0%
GTATGTATGGTACTAGTTCA+AGG - chr1_3:49351419-49351438 None:intergenic 35.0%
!! GACATGCTCTAAGATTTAGA+AGG - chr1_3:49351693-49351712 None:intergenic 35.0%
ACAGATTGAAAAGTTACAGG+AGG + chr1_3:49351891-49351910 Msa0122590:intron 35.0%
AAAAGTTACAGGAGGAGAAT+CGG + chr1_3:49351899-49351918 Msa0122590:CDS 35.0%
!! TCGGGAGTTAGAATTTGTTT+TGG + chr1_3:49351918-49351937 Msa0122590:CDS 35.0%
GCCTAGAAGATTATCAGAAA+AGG + chr1_3:49351950-49351969 Msa0122590:CDS 35.0%
! ATAACAAGCATTCTAGAGAC+TGG - chr1_3:49352231-49352250 None:intergenic 35.0%
!! CAATCAGCGGATTTTAAACA+TGG - chr1_3:49352276-49352295 None:intergenic 35.0%
ATCCACCAAAACTTGAATAC+AGG - chr1_3:49352309-49352328 None:intergenic 35.0%
!!! ATTCAAGTTTTGGTGGATTC+TGG + chr1_3:49352311-49352330 Msa0122590:intron 35.0%
!! TCTGGAACTTGCTTTGTTTA+TGG + chr1_3:49352329-49352348 Msa0122590:intron 35.0%
AATCCATGAAAATCAGCAAG+TGG - chr1_3:49352390-49352409 None:intergenic 35.0%
!!! ACTTGCTGATTTTCATGGAT+TGG + chr1_3:49352389-49352408 Msa0122590:intron 35.0%
!! AGATTTGCTAAAGAAAGTGC+TGG - chr1_3:49352494-49352513 None:intergenic 35.0%
ATGGCAATACATACTTCAAG+TGG + chr1_3:49352548-49352567 Msa0122590:intron 35.0%
TGGCAATACATACTTCAAGT+GGG + chr1_3:49352549-49352568 Msa0122590:intron 35.0%
!! TGCATTTGGTAATTGACTTG+AGG + chr1_3:49352677-49352696 Msa0122590:intron 35.0%
CTTTCAGATTCTCTAACTTC+TGG - chr1_3:49352744-49352763 None:intergenic 35.0%
CAGAAGTTAGAGAATCTGAA+AGG + chr1_3:49352742-49352761 Msa0122590:CDS 35.0%
! TTTGAAAGTGAAGGTGTGGT+GGG + chr1_3:49348986-49349005 Msa0122590:intron 40.0%
!! GTGGGGTATAGATCTAGTTT+TGG + chr1_3:49349004-49349023 Msa0122590:intron 40.0%
!!! AGAGAGAAGAGAGTGTTTTG+TGG + chr1_3:49349164-49349183 Msa0122590:intron 40.0%
GAATGGAAAAGTAAAAGGGG+GGG - chr1_3:49349496-49349515 None:intergenic 40.0%
CATAGTTATCCAGTAGTAGC+CGG + chr1_3:49349664-49349683 Msa0122590:intron 40.0%
! GATGTACATGACGGTACTTT+TGG - chr1_3:49349734-49349753 None:intergenic 40.0%
ACGGAGAAATCCTATACAAG+AGG - chr1_3:49349817-49349836 None:intergenic 40.0%
! CAAAGTCTTTTTATCCCGGT+TGG + chr1_3:49349865-49349884 Msa0122590:intron 40.0%
CAGAATCATGAATATCCACC+TGG - chr1_3:49349896-49349915 None:intergenic 40.0%
ATGCGAACAATGGAAAACCT+TGG - chr1_3:49349943-49349962 None:intergenic 40.0%
GCTGATAAAGATGCGAACAA+TGG - chr1_3:49349953-49349972 None:intergenic 40.0%
GCATCTTTATCAGCTTGATC+TGG + chr1_3:49349959-49349978 Msa0122590:intron 40.0%
AAGACGCTGCACTTTGATTA+CGG + chr1_3:49350018-49350037 Msa0122590:intron 40.0%
! AAATGCAATTTTAGGCTGGC+AGG + chr1_3:49350344-49350363 Msa0122590:intron 40.0%
! AATGCAATTTTAGGCTGGCA+GGG + chr1_3:49350345-49350364 Msa0122590:intron 40.0%
TCCATGACAATTCTGACTCT+AGG + chr1_3:49350434-49350453 Msa0122590:CDS 40.0%
TCCTAGAGTCAGAATTGTCA+TGG - chr1_3:49350438-49350457 None:intergenic 40.0%
TCACTAAGAGCAACATTGAG+TGG + chr1_3:49350762-49350781 Msa0122590:CDS 40.0%
AAGAGCAACATTGAGTGGAA+AGG + chr1_3:49350767-49350786 Msa0122590:CDS 40.0%
AAAGATAGTAAGAGTTGGGG+GGG - chr1_3:49350963-49350982 None:intergenic 40.0%
TCACATGAGACCTTACAAGA+TGG - chr1_3:49351004-49351023 None:intergenic 40.0%
TGATGCATGTGAGGTGTATT+GGG + chr1_3:49351021-49351040 Msa0122590:intron 40.0%
!! CTTCAAAAGCCGGTTTTGTA+AGG + chr1_3:49351249-49351268 Msa0122590:intron 40.0%
!! GGTTTTGTAAGGGTTGAGTT+AGG + chr1_3:49351260-49351279 Msa0122590:intron 40.0%
! ACTTCACAAATCGTGTTGGT+TGG + chr1_3:49351357-49351376 Msa0122590:intron 40.0%
TACTGCAAGAGTTTATAGGC+AGG + chr1_3:49351386-49351405 Msa0122590:intron 40.0%
GCTTGTCTGCTTCAAAACAA+AGG - chr1_3:49351468-49351487 None:intergenic 40.0%
GTTCAGCACATTTGTTTGCA+AGG - chr1_3:49351502-49351521 None:intergenic 40.0%
TGCAAACAAATGTGCTGAAC+AGG + chr1_3:49351502-49351521 Msa0122590:CDS 40.0%
! CAAATGTGCTGAACAGGTTT+TGG + chr1_3:49351508-49351527 Msa0122590:CDS 40.0%
!! AAGCATTGGTGAGTCTACTT+TGG + chr1_3:49351546-49351565 Msa0122590:intron 40.0%
AAAGTTACAGGAGGAGAATC+GGG + chr1_3:49351900-49351919 Msa0122590:CDS 40.0%
! TCAGAAAAGGTATGCTGATC+TGG + chr1_3:49351963-49351982 Msa0122590:intron 40.0%
! CAGAAAAGGTATGCTGATCT+GGG + chr1_3:49351964-49351983 Msa0122590:intron 40.0%
! AGAAAAGGTATGCTGATCTG+GGG + chr1_3:49351965-49351984 Msa0122590:intron 40.0%
CTCTTGTAGCAAAGAGAAAG+AGG - chr1_3:49352160-49352179 None:intergenic 40.0%
! GATTTTAAACATGGGCAAGG+GGG - chr1_3:49352267-49352286 None:intergenic 40.0%
! GGATTTTAAACATGGGCAAG+GGG - chr1_3:49352268-49352287 None:intergenic 40.0%
! CGGATTTTAAACATGGGCAA+GGG - chr1_3:49352269-49352288 None:intergenic 40.0%
AACTTGAATACAGGAGGTCA+GGG - chr1_3:49352300-49352319 None:intergenic 40.0%
AAACTTGAATACAGGAGGTC+AGG - chr1_3:49352301-49352320 None:intergenic 40.0%
!! GACCTCCTGTATTCAAGTTT+TGG + chr1_3:49352301-49352320 Msa0122590:intron 40.0%
CACCAAAACTTGAATACAGG+AGG - chr1_3:49352306-49352325 None:intergenic 40.0%
!! CTCCTGTATTCAAGTTTTGG+TGG + chr1_3:49352304-49352323 Msa0122590:intron 40.0%
!!! GTACCACTTGCTGATTTTCA+TGG + chr1_3:49352384-49352403 Msa0122590:intron 40.0%
! CCATTGGTGGACAAAATTTG+AGG - chr1_3:49352469-49352488 None:intergenic 40.0%
! CCTCAAATTTTGTCCACCAA+TGG + chr1_3:49352466-49352485 Msa0122590:intron 40.0%
!! AAAGAAAGTGCTGGAACCAT+TGG - chr1_3:49352485-49352504 None:intergenic 40.0%
TCTAATCTATTCTCCCTTGG+AGG + chr1_3:49352525-49352544 Msa0122590:intron 40.0%
TATGTATTGCCATCCTCCAA+GGG - chr1_3:49352541-49352560 None:intergenic 40.0%
AAGCTGAACTAGAGGAGTTA+AGG + chr1_3:49352883-49352902 Msa0122590:CDS 40.0%
AGCTGAACTAGAGGAGTTAA+GGG + chr1_3:49352884-49352903 Msa0122590:CDS 40.0%
! GTTTGAAAGTGAAGGTGTGG+TGG + chr1_3:49348985-49349004 Msa0122590:intron 45.0%
! TTGAAAGTGAAGGTGTGGTG+GGG + chr1_3:49348987-49349006 Msa0122590:intron 45.0%
AGAGAGAGAGAAGACTAACC+TGG + chr1_3:49349133-49349152 Msa0122590:intron 45.0%
!!! GAGAGTGTTTTGTGGTGTGT+TGG + chr1_3:49349172-49349191 Msa0122590:intron 45.0%
GGCATCTCTTGACATGTTTG+TGG + chr1_3:49349630-49349649 Msa0122590:intron 45.0%
CGGCTACTACTGGATAACTA+TGG - chr1_3:49349666-49349685 None:intergenic 45.0%
!!! TACTTTTGGGACCCATGCTT+CGG - chr1_3:49349720-49349739 None:intergenic 45.0%
ATAGGATTTCTCCGTCCAGA+AGG + chr1_3:49349822-49349841 Msa0122590:intron 45.0%
GCTAGCAAATTCCTTCTGGA+CGG - chr1_3:49349836-49349855 None:intergenic 45.0%
!! ATGGGCTAGCAAATTCCTTC+TGG - chr1_3:49349840-49349859 None:intergenic 45.0%
AGACGCTGCACTTTGATTAC+GGG + chr1_3:49350019-49350038 Msa0122590:intron 45.0%
CCATGTTTCGTGTGAATCAC+TGG - chr1_3:49350054-49350073 None:intergenic 45.0%
CCAGTGATTCACACGAAACA+TGG + chr1_3:49350051-49350070 Msa0122590:intron 45.0%
! GGTTTTCATCCCGAGGAATA+TGG + chr1_3:49350104-49350123 Msa0122590:intron 45.0%
GCAGGGTTAACGTCTCAAAA+CGG + chr1_3:49350362-49350381 Msa0122590:CDS 45.0%
CAGGGTTAACGTCTCAAAAC+GGG + chr1_3:49350363-49350382 Msa0122590:CDS 45.0%
TAACGTCTCAAAACGGGAGA+AGG + chr1_3:49350369-49350388 Msa0122590:CDS 45.0%
TGGAGTCTGCTGTTAATGCA+AGG + chr1_3:49350407-49350426 Msa0122590:CDS 45.0%
TGAAGCCATCACACGAAACT+CGG - chr1_3:49350649-49350668 None:intergenic 45.0%
CCTTACAAGATGGCAAAACG+AGG - chr1_3:49350994-49351013 None:intergenic 45.0%
! CCTCGTTTTGCCATCTTGTA+AGG + chr1_3:49350991-49351010 Msa0122590:intron 45.0%
GTGATGCATGTGAGGTGTAT+TGG + chr1_3:49351020-49351039 Msa0122590:intron 45.0%
GATGCATGTGAGGTGTATTG+GGG + chr1_3:49351022-49351041 Msa0122590:intron 45.0%
ATGCATGTGAGGTGTATTGG+GGG + chr1_3:49351023-49351042 Msa0122590:intron 45.0%
TCGGTCACACACAAAATGAC+CGG + chr1_3:49351143-49351162 Msa0122590:intron 45.0%
CACACAAAATGACCGGTCAT+AGG + chr1_3:49351150-49351169 Msa0122590:intron 45.0%
ACTCTCAACACACCTATGAC+CGG - chr1_3:49351165-49351184 None:intergenic 45.0%
GTGTGTTGAGAGTCTCACAT+TGG + chr1_3:49351172-49351191 Msa0122590:intron 45.0%
GTTGAGAGTCTCACATTGGA+CGG + chr1_3:49351176-49351195 Msa0122590:intron 45.0%
TTGAGAGTCTCACATTGGAC+GGG + chr1_3:49351177-49351196 Msa0122590:intron 45.0%
TCACTCAGGACTTCAAAAGC+CGG + chr1_3:49351239-49351258 Msa0122590:intron 45.0%
! GCGGATTTTAAACATGGGCA+AGG - chr1_3:49352270-49352289 None:intergenic 45.0%
ATCTATTCTCCCTTGGAGGA+TGG + chr1_3:49352529-49352548 Msa0122590:intron 45.0%
GTATGTATTGCCATCCTCCA+AGG - chr1_3:49352542-49352561 None:intergenic 45.0%
CTGAAGCTGCTTGTGAACAA+AGG + chr1_3:49352847-49352866 Msa0122590:CDS 45.0%
!!! TTAAATATAAGTTAAATTTT+TGG + chr1_3:49349561-49349580 Msa0122590:intron 5.0%
!!! TTTGATAATTTTTTTTTTTT+TGG + chr1_3:49350294-49350313 Msa0122590:intron 5.0%
TGGAAAAGTAAAAGGGGGGG+TGG - chr1_3:49349493-49349512 None:intergenic 50.0%
TGTTAAGAGCCGGCTACTAC+TGG - chr1_3:49349676-49349695 None:intergenic 50.0%
!!! ACTTTTGGGACCCATGCTTC+GGG - chr1_3:49349719-49349738 None:intergenic 50.0%
TCGGGATGAAAACCAGATGG+CGG - chr1_3:49350098-49350117 None:intergenic 50.0%
TCCTCGGGATGAAAACCAGA+TGG - chr1_3:49350101-49350120 None:intergenic 50.0%
ATCATTGGCAGAGTCTCTGC+AGG + chr1_3:49350247-49350266 Msa0122590:intron 50.0%
TACGATGGAAGAGGCCAAAC+AGG + chr1_3:49350516-49350535 Msa0122590:CDS 50.0%
GAAGAGGCCAAACAGGATAC+TGG + chr1_3:49350523-49350542 Msa0122590:CDS 50.0%
ACGCAGACCAGTATCCTGTT+TGG - chr1_3:49350533-49350552 None:intergenic 50.0%
CAAAGCCGAGTTTCGTGTGA+TGG + chr1_3:49350641-49350660 Msa0122590:CDS 50.0%
GGTCTCATGTGATGCATGTG+AGG + chr1_3:49351012-49351031 Msa0122590:intron 50.0%
AACCGGGCAATGGTTGAGTT+AGG + chr1_3:49351051-49351070 Msa0122590:intron 50.0%
CACCTAACTCAACCATTGCC+CGG - chr1_3:49351056-49351075 None:intergenic 50.0%
TGAGAGTCTCACATTGGACG+GGG + chr1_3:49351178-49351197 Msa0122590:intron 50.0%
! GATCTGGGGTTGTTCAGTAG+TGG + chr1_3:49351979-49351998 Msa0122590:intron 50.0%
TTGGTAAGCACAACAGCCAC+AGG - chr1_3:49352111-49352130 None:intergenic 50.0%
TGGGCAAGGGGGAAAAATGA+GGG - chr1_3:49352256-49352275 None:intergenic 50.0%
ATGGGCAAGGGGGAAAAATG+AGG - chr1_3:49352257-49352276 None:intergenic 50.0%
!! GAAAGTGCTGGAACCATTGG+TGG - chr1_3:49352482-49352501 None:intergenic 50.0%
TGCTGCAGAAGCTGAACTAG+AGG + chr1_3:49352875-49352894 Msa0122590:CDS 50.0%
CTTCGGGTCACACCATGTCA+AGG - chr1_3:49349703-49349722 None:intergenic 55.0%
ACATGGTGTGACCCGAAGCA+TGG + chr1_3:49349705-49349724 Msa0122590:intron 55.0%
CATGGTGTGACCCGAAGCAT+GGG + chr1_3:49349706-49349725 Msa0122590:intron 55.0%
!! TTATCCCGGTTGGAAGCACC+AGG + chr1_3:49349875-49349894 Msa0122590:intron 55.0%
ATCCACCTGGTGCTTCCAAC+CGG - chr1_3:49349883-49349902 None:intergenic 55.0%
!! TAGCAAGAGTGTCCGCCATC+TGG + chr1_3:49350083-49350102 Msa0122590:intron 55.0%
!!! GCCATCTGGTTTTCATCCCG+AGG + chr1_3:49350097-49350116 Msa0122590:intron 55.0%
CAAGATGGCAAAACGAGGCC+CGG - chr1_3:49350989-49351008 None:intergenic 55.0%
GTGTATTGGGGGACGCTAAC+CGG + chr1_3:49351034-49351053 Msa0122590:intron 55.0%
TGTATTGGGGGACGCTAACC+GGG + chr1_3:49351035-49351054 Msa0122590:intron 55.0%
TTGTGTGTGACCGACCAGAG+AGG - chr1_3:49351137-49351156 None:intergenic 55.0%
GTCTCACATTGGACGGGGTT+TGG + chr1_3:49351183-49351202 Msa0122590:intron 55.0%
! TTGGTGGGCAGTCATCACTC+AGG + chr1_3:49351225-49351244 Msa0122590:intron 55.0%
!! TGAAAAGAAGCACCCGCCTG+TGG + chr1_3:49352092-49352111 Msa0122590:intron 55.0%
TAAGCACAACAGCCACAGGC+GGG - chr1_3:49352107-49352126 None:intergenic 55.0%
GTAAGCACAACAGCCACAGG+CGG - chr1_3:49352108-49352127 None:intergenic 55.0%
AGGAGGTCAGGGACAATCAG+CGG - chr1_3:49352289-49352308 None:intergenic 55.0%
TCCACCTGGTGCTTCCAACC+GGG - chr1_3:49349882-49349901 None:intergenic 60.0%
!! AATGGGGATGATGGACGCGC+AGG + chr1_3:49350683-49350702 Msa0122590:CDS 60.0%
TCTGTTGGGGCCCTCGCTAT+CGG + chr1_3:49351110-49351129 Msa0122590:intron 60.0%
!! TCCCGGTTGGAAGCACCAGG+TGG + chr1_3:49349878-49349897 Msa0122590:intron 65.0%
TGGACGCGCAGGTGAAGCGA+TGG + chr1_3:49350694-49350713 Msa0122590:CDS 65.0%
CTGTTGGGGCCCTCGCTATC+GGG + chr1_3:49351111-49351130 Msa0122590:intron 65.0%
CCAGAGAGGCCCGATAGCGA+GGG - chr1_3:49351123-49351142 None:intergenic 65.0%
ACCAGAGAGGCCCGATAGCG+AGG - chr1_3:49351124-49351143 None:intergenic 65.0%
CGCTATCGGGCCTCTCTGGT+CGG + chr1_3:49351124-49351143 Msa0122590:intron 65.0%
GGGGGACGCTAACCGGGCAA+TGG + chr1_3:49351041-49351060 Msa0122590:intron 70.0%
CCCTCGCTATCGGGCCTCTC+TGG + chr1_3:49351120-49351139 Msa0122590:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 49348965 49352926 49348965 ID=Msa0122590;Name=Msa0122590
chr1_3 mRNA 49348965 49352926 49348965 ID=Msa0122590-mRNA-1;Parent=Msa0122590;Name=Msa0122590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.66|0.42|0.71|0.83|0.85|7|0|234
chr1_3 exon 49348965 49348971 49348965 ID=Msa0122590-mRNA-1:exon:14916;Parent=Msa0122590-mRNA-1
chr1_3 exon 49349408 49349415 49349408 ID=Msa0122590-mRNA-1:exon:14917;Parent=Msa0122590-mRNA-1
chr1_3 exon 49350358 49350544 49350358 ID=Msa0122590-mRNA-1:exon:14918;Parent=Msa0122590-mRNA-1
chr1_3 exon 49350628 49350788 49350628 ID=Msa0122590-mRNA-1:exon:14919;Parent=Msa0122590-mRNA-1
chr1_3 exon 49351482 49351553 49351482 ID=Msa0122590-mRNA-1:exon:14920;Parent=Msa0122590-mRNA-1
chr1_3 exon 49351895 49351971 49351895 ID=Msa0122590-mRNA-1:exon:14921;Parent=Msa0122590-mRNA-1
chr1_3 exon 49352737 49352926 49352737 ID=Msa0122590-mRNA-1:exon:14922;Parent=Msa0122590-mRNA-1
chr1_3 CDS 49348965 49348971 49348965 ID=Msa0122590-mRNA-1:cds;Parent=Msa0122590-mRNA-1
chr1_3 CDS 49349408 49349415 49349408 ID=Msa0122590-mRNA-1:cds;Parent=Msa0122590-mRNA-1
chr1_3 CDS 49350358 49350544 49350358 ID=Msa0122590-mRNA-1:cds;Parent=Msa0122590-mRNA-1
chr1_3 CDS 49350628 49350788 49350628 ID=Msa0122590-mRNA-1:cds;Parent=Msa0122590-mRNA-1
chr1_3 CDS 49351482 49351553 49351482 ID=Msa0122590-mRNA-1:cds;Parent=Msa0122590-mRNA-1
chr1_3 CDS 49351895 49351971 49351895 ID=Msa0122590-mRNA-1:cds;Parent=Msa0122590-mRNA-1
chr1_3 CDS 49352737 49352926 49352737 ID=Msa0122590-mRNA-1:cds;Parent=Msa0122590-mRNA-1
Gene Sequence

>Msa0122590

ATGAAAAAAAAACTTGCTGGCAGGGTTAACGTCTCAAAACGGGAGAAGGAGTTGAAGTTGAAATTGGAGTCTGCTGTTAATGCAAGGCATATCCATGACAATTCTGACTCTAGGATTGATGAGCTCAAGCTTCAATTGCAAAAGTGTATTCTTGAAAAGAATGATCTTGAAATTACGATGGAAGAGGCCAAACAGGATACTGGGAGAAAAGATATCAAAGCCGAGTTTCGTGTGATGGCTTCAGCTTTATCTAAAGAAATGGGGATGATGGACGCGCAGGTGAAGCGATGGAAAGATGCAGCTCTTGAAGCTGTATCATTACGTGAGAAAGCGCATTCACTAAGAGCAACATTGAGTGGAAAGACAAGCGAACTCAAGAGCCTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATGAAGTCTACAAAAGCATTGATTGAAAAGTTACAGGAGGAGAATCGGGAGTTAGAATTTGTTTTGGATATGTATGGCCTAGAAGATTATCAGAAAAGCTTGCCAGAAGTTAGAGAATCTGAAAGGAAAGCTCGCTCTCAAGCTGAAATGCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTGCTGCTGCAGAAGCTGAACTAGAGGAGTTAAGGGCCCAGTTTGATGAAAATGAA

Protein sequence

>Msa0122590

MKKKLAGRVNVSKREKELKLKLESAVNARHIHDNSDSRIDELKLQLQKCILEKNDLEITMEEAKQDTGRKDIKAEFRVMASALSKEMGMMDAQVKRWKDAALEAVSLREKAHSLRATLSGKTSELKSLANKCAEQVLEMKSTKALIEKLQEENRELEFVLDMYGLEDYQKSLPEVRESERKARSQAEMLKNALDEHGLELRVRAANEAEAACEQRLAAAEAELEELRAQFDENE