AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0245940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0245940 MtrunA17_Chr2g0300211 92.805 1223 54 3 1 1223 6 1194 0.0 2203
Msa0245940 MtrunA17_Chr4g0070741 53.865 1216 405 23 14 1222 10 1076 0.0 1125
Msa0245940 MtrunA17_Chr1g0150791 37.157 401 199 12 14 391 25 395 3.82e-61 228
Msa0245940 MtrunA17_Chr6g0483131 35.928 167 104 1 76 239 113 279 1.72e-30 130
Msa0245940 MtrunA17_Chr6g0483131 30.928 194 112 6 728 912 514 694 2.36e-18 91.3
Msa0245940 MtrunA17_Chr8g0392621 35.119 168 104 2 74 238 128 293 3.69e-28 122
Msa0245940 MtrunA17_Chr8g0392621 23.690 477 218 17 728 1193 535 876 2.18e-21 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0245940 AT5G20610.1 53.143 700 275 14 534 1216 500 1163 0.0 610
Msa0245940 AT5G20610.1 49.859 355 152 6 5 352 3 338 4.49e-96 334
Msa0245940 AT5G26160.2 34.570 674 322 13 554 1223 418 976 2.04e-84 297
Msa0245940 AT5G26160.2 40.694 317 143 7 16 329 17 291 3.22e-59 222
Msa0245940 AT5G26160.1 34.570 674 322 13 554 1223 418 976 2.04e-84 297
Msa0245940 AT5G26160.1 40.694 317 143 7 16 329 17 291 3.22e-59 222
Msa0245940 AT5G26160.3 35.156 640 296 13 554 1189 418 942 1.85e-83 294
Msa0245940 AT5G26160.3 40.694 317 143 7 16 329 17 291 2.68e-59 222
Msa0245940 AT1G42550.1 31.429 210 129 6 73 277 115 314 2.12e-25 114
Msa0245940 AT1G42550.1 27.660 282 175 9 663 940 461 717 8.73e-16 83.2

Find 310 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTATACTTGTTCGGTTTA+TGG 0.150358 2_2:+26026201 Msa0245940:CDS
CAATTTCACAGTAGCGTTAA+TGG 0.213500 2_2:+26028977 Msa0245940:CDS
CAGTGCGCCGGAGCTTGATT+TGG 0.216747 2_2:+26026293 Msa0245940:CDS
CAAACCCCATTGACGCATTA+AGG 0.220008 2_2:-26027825 None:intergenic
AAGAAGAGTAGTGGGGTTTC+TGG 0.221014 2_2:+26025766 Msa0245940:CDS
GAAGAGGAGGGACGGGGTTT+TGG 0.224303 2_2:+26026125 Msa0245940:CDS
CAAATATATAATTTACTTGA+TGG 0.239987 2_2:-26029819 None:intergenic
GGAAGTGGACTACAAGTTTC+AGG 0.258749 2_2:+26026388 Msa0245940:CDS
TCATTATCTTGACGGTCTTC+AGG 0.265075 2_2:-26026981 None:intergenic
AACAAAATAAATCAATTTCT+TGG 0.271395 2_2:-26029680 None:intergenic
TTGCAGCATGATTCAATAAT+AGG 0.275473 2_2:+26028396 Msa0245940:CDS
CGAATTTGAATTGAAATTGC+TGG 0.276086 2_2:-26028478 None:intergenic
TAACCTTTCTGTTCCTTCTA+AGG 0.279800 2_2:-26028227 None:intergenic
AATGACTCCTCTACTTTAAC+AGG 0.280432 2_2:-26027047 None:intergenic
CTCCCTTTACCCTTCGGTTT+CGG 0.285358 2_2:-26025922 None:intergenic
GGCTCAAATGCTAGAAGATT+TGG 0.286989 2_2:+26027793 Msa0245940:CDS
TCATTTGGTATAATGACATT+AGG 0.290250 2_2:-26029524 None:intergenic
AGTGCGCCGGAGCTTGATTT+GGG 0.292250 2_2:+26026294 Msa0245940:CDS
TACAATTAAACCTCTTGTTT+CGG 0.306677 2_2:-26026029 None:intergenic
GATTTGAATTCCGCAACTTT+AGG 0.307221 2_2:-26027419 None:intergenic
AATCCGAGCCTGCTGGACTA+TGG 0.310295 2_2:-26027526 None:intergenic
CCGAAACCGGTACAATCTTT+TGG 0.312560 2_2:-26027875 None:intergenic
CCAAAAGATTGTACCGGTTT+CGG 0.315466 2_2:+26027875 Msa0245940:CDS
CTAAGTCTATTTGTGTCATT+TGG 0.323856 2_2:-26029539 None:intergenic
GCCTCCTCTTGCCGAGGGGT+TGG 0.325484 2_2:+26027937 Msa0245940:CDS
GTTAATTAAATTGAGCCATC+TGG 0.326064 2_2:+26029647 Msa0245940:three_prime_UTR
CCTCCTCTTGCCGAGGGGTT+GGG 0.326250 2_2:+26027938 Msa0245940:CDS
TCATGAAATGCATCAAGTTC+AGG 0.346697 2_2:-26026900 None:intergenic
CAGCAATTTCAATTCAAATT+CGG 0.348752 2_2:+26028479 Msa0245940:CDS
TACAAAGAGGATGAATCTTC+TGG 0.350124 2_2:+26027224 Msa0245940:CDS
TCGTTAACTGCATGCACTTC+AGG 0.350509 2_2:-26026849 None:intergenic
CATTTGGTATAATGACATTA+GGG 0.352561 2_2:-26029523 None:intergenic
AGCTGCTGGTTTGCAGTTGA+TGG 0.356175 2_2:+26028716 Msa0245940:CDS
GACTACAAGTTTCAGGTTAT+CGG 0.359817 2_2:+26026395 Msa0245940:CDS
TTACCCTTCGGTTTCGGATC+AGG 0.364182 2_2:-26025916 None:intergenic
AACTGTCTTTGTTTAACATC+TGG 0.365532 2_2:-26026552 None:intergenic
TCACGGTGGTTGCTTGCTAA+TGG 0.369219 2_2:+26029323 Msa0245940:CDS
ATTTCTGCAGGTACAACAAC+AGG 0.370298 2_2:-26028064 None:intergenic
GTATATCCATCTGGTTTGAT+TGG 0.377018 2_2:-26026801 None:intergenic
CGGAGGCTATCTACGATCTA+TGG 0.378525 2_2:+26027982 Msa0245940:CDS
TAATATCAATGCCTTGGCCT+TGG 0.382616 2_2:-26028671 None:intergenic
TGTTGTTGTACCTGCAGAAA+TGG 0.384066 2_2:+26028066 Msa0245940:CDS
TCTTCAGGTGGTAATTGAAT+TGG 0.384371 2_2:-26027902 None:intergenic
TAGTCAAAAGAAATTGTTAA+AGG 0.388576 2_2:+26025789 Msa0245940:CDS
GGCAACGTAGGAAGCTCTTC+AGG 0.390479 2_2:-26027917 None:intergenic
TCAACACATTAGGAGCATTA+TGG 0.391837 2_2:-26026497 None:intergenic
GGGGATGCCTTTGCGGTAAC+CGG 0.392638 2_2:-26029410 None:intergenic
GCCGTGATGAATGTCAGTTT+TGG 0.394511 2_2:+26026432 Msa0245940:CDS
GTACCTGCAGAAATGGGTTC+CGG 0.395115 2_2:+26028073 Msa0245940:CDS
TCTGCACTAGCCAGCTCAAT+AGG 0.396238 2_2:+26026690 Msa0245940:CDS
AGGAGAAGAGCTCGGGGAAG+TGG 0.397672 2_2:+26026373 Msa0245940:CDS
GTTAAACAAAGACAGTTTGA+TGG 0.401336 2_2:+26026558 Msa0245940:CDS
TTGCAGTTGATGGATGTAAA+AGG 0.402361 2_2:+26028726 Msa0245940:CDS
AGAAATGGGTTCCGGGATAA+TGG 0.405626 2_2:+26028081 Msa0245940:CDS
CGGTGTCTGGTTCGAATTCG+AGG 0.406241 2_2:+26025866 Msa0245940:CDS
CTCCTAATGTGTTGACTTCG+AGG 0.406506 2_2:+26026505 Msa0245940:CDS
CATCCCCTGCTGACACTTTG+TGG 0.408635 2_2:+26029426 Msa0245940:CDS
ACATTGTTGCACAATCCATT+GGG 0.409085 2_2:+26028634 Msa0245940:CDS
GATTAAACTCCCACTAGCTT+TGG 0.409557 2_2:-26028026 None:intergenic
ATAAGAGGTCTATATGGAAT+TGG 0.412448 2_2:+26025980 Msa0245940:CDS
GAGTGGATGAAGCTGGATTC+TGG 0.413959 2_2:+26028801 Msa0245940:CDS
CTATTACTCCCTTTACCCTT+CGG 0.419672 2_2:-26025928 None:intergenic
TTTGAGAAGGAAGCCCTAGA+TGG 0.421853 2_2:+26027593 Msa0245940:CDS
AGAAAAGGCGTGCAGCTCTC+TGG 0.422171 2_2:+26026737 Msa0245940:CDS
GAAGCTATGCCTGCCTTAGA+AGG 0.422956 2_2:+26028214 Msa0245940:CDS
CAGAAGCCTTAATGCGTCAA+TGG 0.424767 2_2:+26027819 Msa0245940:CDS
CTTCATGTACATTTGATTGA+AGG 0.424825 2_2:+26026060 Msa0245940:CDS
TAGAAGTGCTTCGAGGAATT+CGG 0.426780 2_2:+26025846 Msa0245940:CDS
GAAGTTGACTTATACTTGTT+CGG 0.427532 2_2:+26026194 Msa0245940:CDS
GCTTCGAGGAATTCGGTGTC+TGG 0.427810 2_2:+26025853 Msa0245940:CDS
AGAAGCCTTAATGCGTCAAT+GGG 0.432208 2_2:+26027820 Msa0245940:CDS
TTGAAAGGAACACCACCATC+TGG 0.432249 2_2:+26028447 Msa0245940:CDS
TACCTGCAGAAATGGGTTCC+GGG 0.433085 2_2:+26028074 Msa0245940:CDS
AACATTGTTGCACAATCCAT+TGG 0.433367 2_2:+26028633 Msa0245940:CDS
ATCCGAAACCGAAGGGTAAA+GGG 0.433812 2_2:+26025920 Msa0245940:CDS
GGAGTTCAAAAGGAGGAGTT+AGG 0.434151 2_2:+26028910 Msa0245940:CDS
GGCCAAGGCATTGATATTAA+CGG 0.434586 2_2:+26028675 Msa0245940:CDS
TTGGTATTCTTGAAAATTGA+GGG 0.436431 2_2:-26028007 None:intergenic
TTCATGTACATTTGATTGAA+GGG 0.438607 2_2:+26026061 Msa0245940:CDS
TTGAATTGGACTTCCGAAAC+CGG 0.441219 2_2:-26027888 None:intergenic
GAGGTTGCTTCCTCTCACTT+TGG 0.442211 2_2:+26026338 Msa0245940:CDS
CAGGTTATCGGGAAAGGCTA+AGG 0.445056 2_2:+26026407 Msa0245940:CDS
TTTATCCGTGGGAGTTCAAA+AGG 0.446491 2_2:+26028900 Msa0245940:CDS
CATTATCTTGACGGTCTTCA+GGG 0.446875 2_2:-26026980 None:intergenic
GTCAGCAGGGGATGCCTTTG+CGG 0.449420 2_2:-26029417 None:intergenic
TTCAAGAATACCAAAGCTAG+TGG 0.449697 2_2:+26028016 Msa0245940:CDS
CTTTGATGATGTTACAGAAT+CGG 0.451114 2_2:+26027469 Msa0245940:CDS
AGGAGACGAAGCAGAGGCTC+CGG 0.451582 2_2:+26028930 Msa0245940:CDS
CTTGAGGAGGAGAAGAGCTC+GGG 0.451845 2_2:+26026366 Msa0245940:CDS
GCAGGCTTAAAAGTATCTTC+TGG 0.456549 2_2:+26027125 Msa0245940:CDS
ACCTCGATGCAGCAACAATC+TGG 0.457199 2_2:+26029299 Msa0245940:CDS
ATTGTTGTTGTTCCGTAACT+CGG 0.458042 2_2:-26029114 None:intergenic
CTTTCTGTTCCTTCTAAGGC+AGG 0.458559 2_2:-26028223 None:intergenic
ATAAATCAATTTCTTGGCAC+AGG 0.458869 2_2:-26029674 None:intergenic
TGGTTGCTTGCTAATGGAAT+GGG 0.460688 2_2:+26029329 Msa0245940:CDS
CTCGGCATGGAAGGAGCTGC+TGG 0.461743 2_2:+26028702 Msa0245940:CDS
TGTATTGGAAGAGGAGGGAC+GGG 0.463311 2_2:+26026118 Msa0245940:CDS
GATGGCTATGATGCTTCTAA+TGG 0.463402 2_2:+26027665 Msa0245940:CDS
GATGCTCCTTCTGAAGGTCT+TGG 0.463583 2_2:-26027736 None:intergenic
TCTCACTTTGGAGGAGCTTG+AGG 0.465573 2_2:+26026350 Msa0245940:CDS
TCACACCTTGCAATTATTGA+AGG 0.467249 2_2:-26029728 None:intergenic
CATCTGGCTTATCTGTCTCT+AGG 0.470084 2_2:-26026926 None:intergenic
TTTGGTGACTCGTCCGGCTA+AGG 0.470886 2_2:+26026143 Msa0245940:CDS
TAAGAAATTCGATGAAGAAA+AGG 0.470892 2_2:+26026722 Msa0245940:CDS
TCAAGTAAAAGGCAGCCATC+TGG 0.472950 2_2:-26026942 None:intergenic
AATTGAAGATCTTGCACCGT+TGG 0.473342 2_2:+26028533 Msa0245940:CDS
AGAAGGATAAGAGGTCTATA+TGG 0.473617 2_2:+26025974 Msa0245940:CDS
TGCCTCGAAGTCAACACATT+AGG 0.474277 2_2:-26026507 None:intergenic
CTTGTTCGGTTTATGGAAGT+AGG 0.476128 2_2:+26026208 Msa0245940:CDS
TGGAAGCAGCAGCATGAGGC+GGG 0.476172 2_2:+26026578 Msa0245940:CDS
AGCAGCAGCATGAGGCGGGC+CGG 0.479074 2_2:+26026582 Msa0245940:CDS
CTCGTCTCAAGCTGCGGAAG+AGG 0.479142 2_2:+26026632 Msa0245940:CDS
AGTAGCAAAGGTGGAGATGA+AGG 0.479221 2_2:+26029163 Msa0245940:CDS
TTTGTAGCGTGTCCGAGTTA+CGG 0.479480 2_2:+26029102 Msa0245940:CDS
GATCCGAAACCGAAGGGTAA+AGG 0.479881 2_2:+26025919 Msa0245940:CDS
ATGGAATTGGAGGCCGTTGA+AGG 0.481913 2_2:+26025993 Msa0245940:CDS
GTTGCTTCCTCTCACTTTGG+AGG 0.482124 2_2:+26026341 Msa0245940:CDS
AGCAGTGATGTTGGTGTTGA+CGG 0.483883 2_2:+26028750 Msa0245940:CDS
CAAAATCGAAGCACTTTCAA+TGG 0.485047 2_2:+26028563 Msa0245940:CDS
TTTGGTATTCTTGAAAATTG+AGG 0.485979 2_2:-26028008 None:intergenic
GATTGTGCAACAATGTTAGA+TGG 0.486818 2_2:-26028627 None:intergenic
TTAATTAAATTGAGCCATCT+GGG 0.487055 2_2:+26029648 Msa0245940:three_prime_UTR
GTTGTTGTACCTGCAGAAAT+GGG 0.488384 2_2:+26028067 Msa0245940:CDS
TTGCTTCATACTTCGCAGAA+TGG 0.489554 2_2:-26026242 None:intergenic
ACGTTGCCTCCTCTTGCCGA+GGG 0.492415 2_2:+26027932 Msa0245940:CDS
ACTACAAGTTTCAGGTTATC+GGG 0.493096 2_2:+26026396 Msa0245940:CDS
GGGCCCAACCCCTCGGCAAG+AGG 0.494969 2_2:-26027941 None:intergenic
CTTGGCACAGGCTCCCCAGA+TGG 0.495359 2_2:-26029662 None:intergenic
TAGTGGGAGTTTAATCATGC+AGG 0.496365 2_2:+26028033 Msa0245940:CDS
TACGTTGCCTCCTCTTGCCG+AGG 0.497116 2_2:+26027931 Msa0245940:CDS
GTGGTTGCTTGCTAATGGAA+TGG 0.497825 2_2:+26029328 Msa0245940:CDS
TTACAGTGTTTGGCTTCAGT+TGG 0.498327 2_2:+26028109 Msa0245940:CDS
AGCCCATAGTCCAGCAGGCT+CGG 0.500368 2_2:+26027523 Msa0245940:CDS
ATGCTCCACAAAGTGTCAGC+AGG 0.500424 2_2:-26029431 None:intergenic
GAGGGATTGAGAATACAATC+TGG 0.501547 2_2:+26028585 Msa0245940:CDS
AACTCTTTCGACTTTATCCG+TGG 0.502597 2_2:+26028888 Msa0245940:CDS
ATCCGAGCCTGCTGGACTAT+GGG 0.503922 2_2:-26027525 None:intergenic
ATCCCGGAACCCATTTCTGC+AGG 0.504024 2_2:-26028076 None:intergenic
AATTCGAGGTCTAAAACAGC+TGG 0.504680 2_2:+26025880 Msa0245940:CDS
TCAAGCTGCGGAAGAGGTAA+AGG 0.506259 2_2:+26026638 Msa0245940:CDS
TGTTAGAGCATCAATCAAGT+TGG 0.506281 2_2:+26029699 Msa0245940:three_prime_UTR
ATCCGTTAATATCAATGCCT+TGG 0.511498 2_2:-26028677 None:intergenic
GGCAAAGGAGTTAATGCCAC+TGG 0.511777 2_2:+26028153 Msa0245940:CDS
GTCGAAAGAGTTAGCATGAT+GGG 0.512946 2_2:-26028877 None:intergenic
ACACACTGAACCACCTTAGC+CGG 0.513179 2_2:-26026156 None:intergenic
CCCAACCCCTCGGCAAGAGG+AGG 0.513544 2_2:-26027938 None:intergenic
ATCGAAGCACTTTCAATGGA+GGG 0.515706 2_2:+26028567 Msa0245940:CDS
TTGAGAAGGAAGCCCTAGAT+GGG 0.516019 2_2:+26027594 Msa0245940:CDS
TGCAGGTACAACAACAGGGT+TGG 0.516777 2_2:-26028059 None:intergenic
TATGAATAAAGCTATGTACT+TGG 0.518447 2_2:+26025822 Msa0245940:CDS
TCAGAGGAAGTATATCCATC+TGG 0.518530 2_2:-26026810 None:intergenic
AACACCAGCGCGGCAAAAGA+TGG 0.519605 2_2:+26026474 Msa0245940:CDS
AGACTTAGTTGACTGAAAAG+TGG 0.522711 2_2:+26029554 Msa0245940:exon
CTTCTGAAGGTCTTGGAACA+AGG 0.522914 2_2:-26027729 None:intergenic
AGTTCAGGTGTGTCAAGCAC+TGG 0.525135 2_2:-26026885 None:intergenic
CATGGTTATTAGAGAAAACA+TGG 0.525249 2_2:+26029753 Msa0245940:three_prime_UTR
AAAGTGGTAAGAAGAGTAGT+GGG 0.525318 2_2:+26025758 Msa0245940:CDS
TGCAGCAACAATCTGGTTCA+CGG 0.525625 2_2:+26029306 Msa0245940:CDS
GACACAGCCCATAGTCCAGC+AGG 0.526823 2_2:+26027518 Msa0245940:CDS
AACGGATCCCTCGGCATGGA+AGG 0.527475 2_2:+26028693 Msa0245940:CDS
GCAAGCATAGGTGTTCCAAC+TGG 0.528237 2_2:-26029032 None:intergenic
AAGTTTCAGGTTATCGGGAA+AGG 0.529464 2_2:+26026401 Msa0245940:CDS
TCTTGATGAGTGGATGAAGC+TGG 0.530315 2_2:+26028794 Msa0245940:CDS
TGCTTCGCTTCTCAGTGCGC+CGG 0.533163 2_2:+26026281 Msa0245940:CDS
GAGAGCTGACATTTCCCCAA+TGG 0.533322 2_2:-26028649 None:intergenic
CACTTTGGAGGAGCTTGAGG+AGG 0.535429 2_2:+26026353 Msa0245940:CDS
CAATTTCAATTCAAATTCGG+TGG 0.536167 2_2:+26028482 Msa0245940:CDS
ATATAAGACGCCTATTGAGC+TGG 0.536219 2_2:-26026700 None:intergenic
GATGAAGGACACAGATAAAG+AGG 0.537631 2_2:+26029178 Msa0245940:CDS
AGAAGCTCTCTCGGAGACTC+CGG 0.538225 2_2:-26027560 None:intergenic
AGATGTGAGGGGAAAACAAA+GGG 0.540666 2_2:+26027772 Msa0245940:CDS
TCTCTTGATGAGGCAAATGA+TGG 0.541036 2_2:+26027167 Msa0245940:CDS
ATACATATCCTTGTTATCAC+AGG 0.541597 2_2:+26029605 Msa0245940:three_prime_UTR
GACAATACAACAAGTAGCAT+GGG 0.542723 2_2:+26028192 Msa0245940:CDS
TGTCTTAAGAGAAGCTCTCT+CGG 0.543137 2_2:-26027569 None:intergenic
ATGCCACTGGAAGATATCAC+GGG 0.545959 2_2:+26028166 Msa0245940:CDS
CTGTAAAACTTCCATTATCC+CGG 0.546253 2_2:-26028092 None:intergenic
GCAGTGATGTTGGTGTTGAC+GGG 0.547297 2_2:+26028751 Msa0245940:CDS
ATTACTGAAGTTCATGTGGC+AGG 0.548786 2_2:+26029239 Msa0245940:CDS
TGAGGCAAATGATGGTTGTA+AGG 0.551776 2_2:+26027175 Msa0245940:CDS
TGAGGCAAATGATGGTTGTA+AGG 0.551776 2_2:+26027274 Msa0245940:CDS
GAAAGTGGTAAGAAGAGTAG+TGG 0.551882 2_2:+26025757 Msa0245940:CDS
GGCAGAAAATGCGGTTTGCT+AGG 0.552629 2_2:+26028951 Msa0245940:CDS
TGCATCTAAATCGATTGCTC+CGG 0.552829 2_2:+26029391 Msa0245940:CDS
GGTGACTCGTCCGGCTAAGG+TGG 0.554227 2_2:+26026146 Msa0245940:CDS
GCTTGAGGAGGAGAAGAGCT+CGG 0.554372 2_2:+26026365 Msa0245940:CDS
ATCTATTGCCTGTGATAACA+AGG 0.558327 2_2:-26029613 None:intergenic
ATGGAAGCAGCAGCATGAGG+CGG 0.558667 2_2:+26026577 Msa0245940:CDS
GAGCATCAATCAAGTTGGAC+TGG 0.560186 2_2:+26029704 Msa0245940:three_prime_UTR
CTGAGAAATTATGAGCCAGT+TGG 0.560904 2_2:+26029017 Msa0245940:CDS
CGTTGAGTCTCAAGATGTGA+GGG 0.562424 2_2:+26027760 Msa0245940:CDS
TCTCCACCAAAAGATTGTAC+CGG 0.562872 2_2:+26027869 Msa0245940:CDS
CAACGAGATGCTCCTTCTGA+AGG 0.563860 2_2:-26027742 None:intergenic
TTTCAGTGTATTGGAAGAGG+AGG 0.564248 2_2:+26026112 Msa0245940:CDS
TTTGCGCAAAAGGACTTGAA+AGG 0.564516 2_2:+26028432 Msa0245940:CDS
AGAGGTCTATATGGAATTGG+AGG 0.567301 2_2:+26025983 Msa0245940:CDS
GTGTATTGGAAGAGGAGGGA+CGG 0.567776 2_2:+26026117 Msa0245940:CDS
GATACACGATTCTCTTGATG+AGG 0.568964 2_2:+26027157 Msa0245940:CDS
GGAGAGCAAAATAGTAGCAA+AGG 0.569505 2_2:+26029151 Msa0245940:CDS
CTCGAGCCAATCAAACCAGA+TGG 0.570830 2_2:+26026795 Msa0245940:CDS
TGTGAGGATGAAGCTGATGA+TGG 0.571431 2_2:+26027647 Msa0245940:CDS
AGGTTATCGGGAAAGGCTAA+GGG 0.571817 2_2:+26026408 Msa0245940:CDS
GCTAGTGCAGACTTAGACGA+TGG 0.571929 2_2:-26026678 None:intergenic
GAGCAAAATAGTAGCAAAGG+TGG 0.572737 2_2:+26029154 Msa0245940:CDS
AAGAAAAGGGCCCAACCCCT+CGG 0.573547 2_2:-26027948 None:intergenic
TGTTTCCCCAAATCAAGCTC+CGG 0.574726 2_2:-26026300 None:intergenic
TCGGTTTATGGAAGTAGGAG+TGG 0.575273 2_2:+26026213 Msa0245940:CDS
AAAACTCTCAATGCAGGCAA+AGG 0.577233 2_2:+26028138 Msa0245940:CDS
ATTGATATTAACGGATCCCT+CGG 0.577279 2_2:+26028684 Msa0245940:CDS
AAACTCTGAGCCTGTGTGGT+TGG 0.577806 2_2:-26028505 None:intergenic
GGAGTTAGGAGACGAAGCAG+AGG 0.577814 2_2:+26028924 Msa0245940:CDS
AGATTCATCCTCTTTGTAAG+CGG 0.579266 2_2:-26027219 None:intergenic
CTTCTAATGGCTCTGAGCAG+TGG 0.579741 2_2:+26027678 Msa0245940:CDS
AGACAATACAACAAGTAGCA+TGG 0.580507 2_2:+26028191 Msa0245940:CDS
CTCGGATTCTGAAAACGAGC+CGG 0.580766 2_2:+26027541 Msa0245940:CDS
TTCAGTGTATTGGAAGAGGA+GGG 0.581577 2_2:+26026113 Msa0245940:CDS
GTTAGATGGTGCATCCTCCT+CGG 0.584673 2_2:-26028613 None:intergenic
AATGCCACTGGAAGATATCA+CGG 0.585124 2_2:+26028165 Msa0245940:CDS
AGCAGCTCCTTCCATGCCGA+GGG 0.585889 2_2:-26028700 None:intergenic
ATATGCGAAAGCGCCTTCAA+CGG 0.587923 2_2:-26026006 None:intergenic
ACTTCAGTAATCTTGAACTG+AGG 0.588259 2_2:-26029227 None:intergenic
GATTGCTCCGGTTACCGCAA+AGG 0.588406 2_2:+26029403 Msa0245940:CDS
CAACAATGACGAGGACGACG+AGG 0.588691 2_2:+26029130 Msa0245940:CDS
ATAGTTTGCAGAAGGATAAG+AGG 0.590341 2_2:+26025965 Msa0245940:CDS
TCTCTTAAGACAGTTTGAGA+AGG 0.590467 2_2:+26027580 Msa0245940:CDS
GTATTGGAAGAGGAGGGACG+GGG 0.590917 2_2:+26026119 Msa0245940:CDS
AGTAGAGGAGTCATTCTCAA+AGG 0.591086 2_2:+26027055 Msa0245940:CDS
GTGCGCCGGAGCTTGATTTG+GGG 0.592524 2_2:+26026295 Msa0245940:CDS
CAAGATTACTGAAGTTCATG+TGG 0.593112 2_2:+26029235 Msa0245940:CDS
ATGTCAGCTCTCCAAGGCCA+AGG 0.593181 2_2:+26028660 Msa0245940:CDS
CAGCAGCTCCTTCCATGCCG+AGG 0.593270 2_2:-26028701 None:intergenic
TGCTCCACAAAGTGTCAGCA+GGG 0.594409 2_2:-26029430 None:intergenic
TTGCTGGACTTCAGTCCAGA+TGG 0.596304 2_2:-26028462 None:intergenic
GTTTCCTGATCCGAAACCGA+AGG 0.596385 2_2:+26025912 Msa0245940:CDS
GGCTAAGGTGGTTCAGTGTG+TGG 0.597990 2_2:+26026158 Msa0245940:CDS
AATCGAAGCACTTTCAATGG+AGG 0.598982 2_2:+26028566 Msa0245940:CDS
AATTGAACCTGTTAAAGTAG+AGG 0.600835 2_2:+26027040 Msa0245940:CDS
AGGGATTGAGAATACAATCT+GGG 0.601300 2_2:+26028586 Msa0245940:CDS
TCTCTTGATGAGGCAAATGA+TGG 0.606951 2_2:+26027266 Msa0245940:CDS
TCGTTGAGTCTCAAGATGTG+AGG 0.609176 2_2:+26027759 Msa0245940:CDS
TTTCGCATATCCGAAACAAG+AGG 0.610923 2_2:+26026019 Msa0245940:CDS
CTCGAACCATCAAAAGTAGA+CGG 0.612749 2_2:-26026087 None:intergenic
TAATTGCAAGGTGTGAAACA+TGG 0.613174 2_2:+26029735 Msa0245940:three_prime_UTR
TATCGTTAACTCTTGATGAG+TGG 0.614675 2_2:+26028784 Msa0245940:CDS
ACTTGGATAGAAGTGCTTCG+AGG 0.614815 2_2:+26025839 Msa0245940:CDS
TCTAGAATCTCCTAAAGTTG+CGG 0.616090 2_2:+26027409 Msa0245940:CDS
GTAAAAGGCAGCAGTGATGT+TGG 0.616788 2_2:+26028741 Msa0245940:CDS
TGATCATGATAGTTTGCAGA+AGG 0.617815 2_2:+26025957 Msa0245940:CDS
AGTCGAAAGAGTTAGCATGA+TGG 0.618219 2_2:-26028878 None:intergenic
CTGGTCCTTCAATAATTGCA+AGG 0.619225 2_2:+26029723 Msa0245940:three_prime_UTR
AATTCGGTGGCCAACCACAC+AGG 0.620829 2_2:+26028495 Msa0245940:CDS
TATTAACGGATCCCTCGGCA+TGG 0.621452 2_2:+26028689 Msa0245940:CDS
TCGGTACTCGTCTCAAGCTG+CGG 0.623823 2_2:+26026626 Msa0245940:CDS
TCAAGCTCCTCCAAAGTGAG+AGG 0.624558 2_2:-26026348 None:intergenic
GAGCAGTGGAATTTCTCTGA+GGG 0.624989 2_2:+26027692 Msa0245940:CDS
ACTCATCAAGAGTTAACGAT+AGG 0.625250 2_2:-26028782 None:intergenic
TTTCCTGATCCGAAACCGAA+GGG 0.626582 2_2:+26025913 Msa0245940:CDS
TCAAGAATACCAAAGCTAGT+GGG 0.626934 2_2:+26028017 Msa0245940:CDS
GATACACGAGTCTCTTGATG+AGG 0.627352 2_2:+26027256 Msa0245940:CDS
TATTTGCAAATGCAAACTTG+TGG 0.630186 2_2:+26029836 Msa0245940:three_prime_UTR
CTTGTTCCAAGACCTTCAGA+AGG 0.630450 2_2:+26027730 Msa0245940:CDS
GGGGAAATGTCAGCTCTCCA+AGG 0.634629 2_2:+26028654 Msa0245940:CDS
TTGATGGAAGCAGCAGCATG+AGG 0.635239 2_2:+26026574 Msa0245940:CDS
AGAGGCTCCGGCAGAAAATG+CGG 0.636754 2_2:+26028942 Msa0245940:CDS
GAGAAGGAAGCCCTAGATGG+GGG 0.637335 2_2:+26027596 Msa0245940:CDS
TTGAGGAGGAGAAGAGCTCG+GGG 0.637637 2_2:+26026367 Msa0245940:CDS
ACTCTTTCGACTTTATCCGT+GGG 0.637876 2_2:+26028889 Msa0245940:CDS
CTGCCTTAGAAGGAACAGAA+AGG 0.639055 2_2:+26028224 Msa0245940:CDS
CCCAAAACTGACATTCATCA+CGG 0.640525 2_2:-26026433 None:intergenic
AAGTGGTAAGAAGAGTAGTG+GGG 0.642087 2_2:+26025759 Msa0245940:CDS
CTAGAGACAGATAAGCCAGA+TGG 0.644964 2_2:+26026927 Msa0245940:CDS
CGTTGCCTCCTCTTGCCGAG+GGG 0.645194 2_2:+26027933 Msa0245940:CDS
GTTTACAAAACTATAGCAGT+CGG 0.647515 2_2:+26026607 Msa0245940:CDS
CTGGACTTCAGTCCAGATGG+TGG 0.651983 2_2:-26028459 None:intergenic
TAATTAAATTGAGCCATCTG+GGG 0.653767 2_2:+26029649 Msa0245940:three_prime_UTR
TGAGAAGGAAGCCCTAGATG+GGG 0.654341 2_2:+26027595 Msa0245940:CDS
TCAATGGGGTTTGAACGAGA+AGG 0.657711 2_2:+26027835 Msa0245940:CDS
GAAGTGCATGCAGTTAACGA+TGG 0.662303 2_2:+26026852 Msa0245940:CDS
ACTTGTATAAGAGCAAGCAT+AGG 0.664968 2_2:-26029044 None:intergenic
TCATACTTCGCAGAATGGTG+AGG 0.666619 2_2:-26026237 None:intergenic
CATTGTTGCACAATCCATTG+GGG 0.667500 2_2:+26028635 Msa0245940:CDS
TCGGCAAGAGGAGGCAACGT+AGG 0.669852 2_2:-26027929 None:intergenic
TGAGCAGTGGAATTTCTCTG+AGG 0.670368 2_2:+26027691 Msa0245940:CDS
AGATGAATCCGCTTACAAAG+AGG 0.671074 2_2:+26027211 Msa0245940:CDS
AATACAATCTGGGATGTCCG+AGG 0.672605 2_2:+26028596 Msa0245940:CDS
AAGATGTGAGGGGAAAACAA+AGG 0.674875 2_2:+26027771 Msa0245940:CDS
GGTTGCTTGCTAATGGAATG+GGG 0.678755 2_2:+26029330 Msa0245940:CDS
AACGTAGGAAGCTCTTCAGG+TGG 0.681799 2_2:-26027914 None:intergenic
TTCCCCGTGATATCTTCCAG+TGG 0.684916 2_2:-26028169 None:intergenic
TTTCTGCAGGTACAACAACA+GGG 0.685625 2_2:-26028063 None:intergenic
TGTCTCAGATTTCGAGACAG+CGG 0.692288 2_2:+26027385 Msa0245940:CDS
TTTCTTCAGACAAAAGACGG+AGG 0.693029 2_2:+26027965 Msa0245940:CDS
ATCCGTGGGAGTTCAAAAGG+AGG 0.693609 2_2:+26028903 Msa0245940:CDS
ACAATCTGGGATGTCCGAGG+AGG 0.696494 2_2:+26028599 Msa0245940:CDS
ACTGGCTCATAATTTCTCAG+AGG 0.701368 2_2:-26029014 None:intergenic
GCTCCACAAAGTGTCAGCAG+GGG 0.702750 2_2:-26029429 None:intergenic
TGGTTGTAAGGATCAGTCAG+TGG 0.703670 2_2:+26027286 Msa0245940:CDS
AACATCGAGTTGATCTTACG+AGG 0.703864 2_2:+26026319 Msa0245940:CDS
GTTGAGTCTCAAGATGTGAG+GGG 0.712630 2_2:+26027761 Msa0245940:CDS
AAACAAACTCTGAGCCTGTG+TGG 0.720121 2_2:-26028509 None:intergenic
ACCAGATTGTTGCTGCATCG+AGG 0.724400 2_2:-26029300 None:intergenic
GAAGCCTTAATGCGTCAATG+GGG 0.725101 2_2:+26027821 Msa0245940:CDS
AGATGAATCTGCTTACAGAG+AGG 0.725793 2_2:+26027310 Msa0245940:CDS
ATGTTGTCGAGAATGGAAAG+TGG 0.726760 2_2:+26025742 None:intergenic
TGCCACTGGAAGATATCACG+GGG 0.738197 2_2:+26028167 Msa0245940:CDS
ACGGAACAACAACAATGACG+AGG 0.743555 2_2:+26029121 Msa0245940:CDS
TGGTTGTAAGGATCACTCAG+TGG 0.749276 2_2:+26027187 Msa0245940:CDS
AGAGGTAAAGGATCTTCACG+AGG 0.753018 2_2:+26026650 Msa0245940:CDS
AGCAACAATCTGGTTCACGG+TGG 0.789915 2_2:+26029309 Msa0245940:CDS
TGTTGGTGATAACACCAGCG+CGG 0.808616 2_2:+26026464 Msa0245940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATGTTTATTTCATTTT+TGG + chr2_2:26029873-26029892 Msa0245940:three_prime_UTR 10.0%
!! TTGAGGTTAATTTATATATA+AGG + chr2_2:26028276-26028295 Msa0245940:intron 15.0%
!!! ATTTTTCTTTGCTTTTTTTT+AGG + chr2_2:26028364-26028383 Msa0245940:intron 15.0%
!! AACAAAATAAATCAATTTCT+TGG - chr2_2:26029683-26029702 None:intergenic 15.0%
!! CAAATATATAATTTACTTGA+TGG - chr2_2:26029822-26029841 None:intergenic 15.0%
!!! GAAATAAACATTTTATTACA+TGG - chr2_2:26029868-26029887 None:intergenic 15.0%
!! TAGTCAAAAGAAATTGTTAA+AGG + chr2_2:26025789-26025808 Msa0245940:CDS 20.0%
!! CAAAAAATTCATTATCTTGA+CGG - chr2_2:26026992-26027011 None:intergenic 20.0%
!!! TGAATTTTTTGTTGTTGATA+AGG + chr2_2:26027001-26027020 Msa0245940:CDS 20.0%
!!! GAATTTTTTGTTGTTGATAA+GGG + chr2_2:26027002-26027021 Msa0245940:CDS 20.0%
!!! CTCTTTATTTGATTTTGATA+TGG + chr2_2:26027622-26027641 Msa0245940:CDS 20.0%
!!! TTAAGTTTTTTAACCAAACA+TGG + chr2_2:26028320-26028339 Msa0245940:intron 20.0%
!!! TAAGTTTTTTAACCAAACAT+GGG + chr2_2:26028321-26028340 Msa0245940:intron 20.0%
!!! CTACAAAATATTTTTTGCTT+TGG - chr2_2:26029089-26029108 None:intergenic 20.0%
!!! TGTTTATTTCATTTTTGGTA+AGG + chr2_2:26029878-26029897 Msa0245940:three_prime_UTR 20.0%
! TATGAATAAAGCTATGTACT+TGG + chr2_2:26025822-26025841 Msa0245940:CDS 25.0%
!! TACAATTAAACCTCTTGTTT+CGG - chr2_2:26026032-26026051 None:intergenic 25.0%
! TTCATGTACATTTGATTGAA+GGG + chr2_2:26026061-26026080 Msa0245940:CDS 25.0%
! TAAGAAATTCGATGAAGAAA+AGG + chr2_2:26026722-26026741 Msa0245940:CDS 25.0%
!! AGATTTTCTTTTGACAAATC+AGG - chr2_2:26026777-26026796 None:intergenic 25.0%
! TTGGTATTCTTGAAAATTGA+GGG - chr2_2:26028010-26028029 None:intergenic 25.0%
! TTTGGTATTCTTGAAAATTG+AGG - chr2_2:26028011-26028030 None:intergenic 25.0%
!!! GTTTTGTATCATTGATTTTG+AGG + chr2_2:26028259-26028278 Msa0245940:intron 25.0%
! CAGCAATTTCAATTCAAATT+CGG + chr2_2:26028479-26028498 Msa0245940:CDS 25.0%
!!! TTTTTTGGTTCTGGTAAAAA+AGG + chr2_2:26029464-26029483 Msa0245940:CDS 25.0%
!!! TTTTTGGTTCTGGTAAAAAA+GGG + chr2_2:26029465-26029484 Msa0245940:CDS 25.0%
! CATTTGGTATAATGACATTA+GGG - chr2_2:26029526-26029545 None:intergenic 25.0%
! TCATTTGGTATAATGACATT+AGG - chr2_2:26029527-26029546 None:intergenic 25.0%
! TTAATTAAATTGAGCCATCT+GGG + chr2_2:26029648-26029667 Msa0245940:three_prime_UTR 25.0%
ATAAGAGGTCTATATGGAAT+TGG + chr2_2:26025980-26025999 Msa0245940:CDS 30.0%
CTTCATGTACATTTGATTGA+AGG + chr2_2:26026060-26026079 Msa0245940:CDS 30.0%
! GAAGTTGACTTATACTTGTT+CGG + chr2_2:26026194-26026213 Msa0245940:CDS 30.0%
ACTTATACTTGTTCGGTTTA+TGG + chr2_2:26026201-26026220 Msa0245940:CDS 30.0%
! AACTGTCTTTGTTTAACATC+TGG - chr2_2:26026555-26026574 None:intergenic 30.0%
GTTAAACAAAGACAGTTTGA+TGG + chr2_2:26026558-26026577 Msa0245940:CDS 30.0%
!!! GCTATAGTTTTGTAAACTTC+CGG - chr2_2:26026604-26026623 None:intergenic 30.0%
GTTTACAAAACTATAGCAGT+CGG + chr2_2:26026607-26026626 Msa0245940:CDS 30.0%
! CTTTTCCAGAATCAAGTAAA+AGG - chr2_2:26026956-26026975 None:intergenic 30.0%
AATTGAACCTGTTAAAGTAG+AGG + chr2_2:26027040-26027059 Msa0245940:CDS 30.0%
!! CTTTGATGATGTTACAGAAT+CGG + chr2_2:26027469-26027488 Msa0245940:CDS 30.0%
! AATGGAAGTTTTACAGTGTT+TGG + chr2_2:26028099-26028118 Msa0245940:CDS 30.0%
AATTGAAAAACTCTCAATGC+AGG + chr2_2:26028132-26028151 Msa0245940:CDS 30.0%
TTGCAGCATGATTCAATAAT+AGG + chr2_2:26028396-26028415 Msa0245940:CDS 30.0%
CGAATTTGAATTGAAATTGC+TGG - chr2_2:26028481-26028500 None:intergenic 30.0%
CAATTTCAATTCAAATTCGG+TGG + chr2_2:26028482-26028501 Msa0245940:CDS 30.0%
TGGTAAAAAAGGGAAAGAAT+CGG + chr2_2:26029475-26029494 Msa0245940:CDS 30.0%
! CTAAGTCTATTTGTGTCATT+TGG - chr2_2:26029542-26029561 None:intergenic 30.0%
! ATACATATCCTTGTTATCAC+AGG + chr2_2:26029605-26029624 Msa0245940:three_prime_UTR 30.0%
GTTAATTAAATTGAGCCATC+TGG + chr2_2:26029647-26029666 Msa0245940:three_prime_UTR 30.0%
TAATTAAATTGAGCCATCTG+GGG + chr2_2:26029649-26029668 Msa0245940:three_prime_UTR 30.0%
ATAAATCAATTTCTTGGCAC+AGG - chr2_2:26029677-26029696 None:intergenic 30.0%
CATGGTTATTAGAGAAAACA+TGG + chr2_2:26029753-26029772 Msa0245940:three_prime_UTR 30.0%
TATTTGCAAATGCAAACTTG+TGG + chr2_2:26029836-26029855 Msa0245940:three_prime_UTR 30.0%
! AACATTTTATTACATGGACG+AGG - chr2_2:26029862-26029881 None:intergenic 30.0%
AAAGTGGTAAGAAGAGTAGT+GGG + chr2_2:26025758-26025777 Msa0245940:CDS 35.0%
! TGATCATGATAGTTTGCAGA+AGG + chr2_2:26025957-26025976 Msa0245940:CDS 35.0%
! ATAGTTTGCAGAAGGATAAG+AGG + chr2_2:26025965-26025984 Msa0245940:CDS 35.0%
AGAAGGATAAGAGGTCTATA+TGG + chr2_2:26025974-26025993 Msa0245940:CDS 35.0%
!! GTTCGAGTTTTTCAGTGTAT+TGG + chr2_2:26026103-26026122 Msa0245940:CDS 35.0%
!! GTTTTTCAGTGTATTGGAAG+AGG + chr2_2:26026109-26026128 Msa0245940:CDS 35.0%
!! GACTACAAGTTTCAGGTTAT+CGG + chr2_2:26026395-26026414 Msa0245940:CDS 35.0%
!! ACTACAAGTTTCAGGTTATC+GGG + chr2_2:26026396-26026415 Msa0245940:CDS 35.0%
!!! GAATGTCAGTTTTGGGTATA+CGG + chr2_2:26026440-26026459 Msa0245940:CDS 35.0%
!! TCAACACATTAGGAGCATTA+TGG - chr2_2:26026500-26026519 None:intergenic 35.0%
! GTATATCCATCTGGTTTGAT+TGG - chr2_2:26026804-26026823 None:intergenic 35.0%
! CGTTTCTTTTCTGATATCAG+AGG - chr2_2:26026829-26026848 None:intergenic 35.0%
TCATGAAATGCATCAAGTTC+AGG - chr2_2:26026903-26026922 None:intergenic 35.0%
AATGACTCCTCTACTTTAAC+AGG - chr2_2:26027050-26027069 None:intergenic 35.0%
! ACTTTTACCTATGATACTGC+AGG + chr2_2:26027107-26027126 Msa0245940:CDS 35.0%
! TTTTAAGCCTGCAGTATCAT+AGG - chr2_2:26027117-26027136 None:intergenic 35.0%
AGATTCATCCTCTTTGTAAG+CGG - chr2_2:26027222-26027241 None:intergenic 35.0%
TACAAAGAGGATGAATCTTC+TGG + chr2_2:26027224-26027243 Msa0245940:CDS 35.0%
! TCTAGAATCTCCTAAAGTTG+CGG + chr2_2:26027409-26027428 Msa0245940:CDS 35.0%
GATTTGAATTCCGCAACTTT+AGG - chr2_2:26027422-26027441 None:intergenic 35.0%
TCTCTTAAGACAGTTTGAGA+AGG + chr2_2:26027580-26027599 Msa0245940:CDS 35.0%
!! TGATTTTGATATGGACTGTG+AGG + chr2_2:26027631-26027650 Msa0245940:CDS 35.0%
TCTTCAGGTGGTAATTGAAT+TGG - chr2_2:26027905-26027924 None:intergenic 35.0%
! CGTCTTTTGTCTGAAGAAAA+GGG - chr2_2:26027964-26027983 None:intergenic 35.0%
! CCTTTTCTTCAGACAAAAGA+CGG + chr2_2:26027962-26027981 Msa0245940:CDS 35.0%
TTCAAGAATACCAAAGCTAG+TGG + chr2_2:26028016-26028035 Msa0245940:CDS 35.0%
TCAAGAATACCAAAGCTAGT+GGG + chr2_2:26028017-26028036 Msa0245940:CDS 35.0%
CTGTAAAACTTCCATTATCC+CGG - chr2_2:26028095-26028114 None:intergenic 35.0%
AGACAATACAACAAGTAGCA+TGG + chr2_2:26028191-26028210 Msa0245940:CDS 35.0%
GACAATACAACAAGTAGCAT+GGG + chr2_2:26028192-26028211 Msa0245940:CDS 35.0%
TAACCTTTCTGTTCCTTCTA+AGG - chr2_2:26028230-26028249 None:intergenic 35.0%
! AGATACAACTTTTGCGCAAA+AGG + chr2_2:26028422-26028441 Msa0245940:CDS 35.0%
! TCGATTTTGTTCATAGCCAA+CGG - chr2_2:26028552-26028571 None:intergenic 35.0%
! CAAAATCGAAGCACTTTCAA+TGG + chr2_2:26028563-26028582 Msa0245940:CDS 35.0%
AGGGATTGAGAATACAATCT+GGG + chr2_2:26028586-26028605 Msa0245940:CDS 35.0%
GATTGTGCAACAATGTTAGA+TGG - chr2_2:26028630-26028649 None:intergenic 35.0%
AACATTGTTGCACAATCCAT+TGG + chr2_2:26028633-26028652 Msa0245940:CDS 35.0%
ACATTGTTGCACAATCCATT+GGG + chr2_2:26028634-26028653 Msa0245940:CDS 35.0%
ATCCGTTAATATCAATGCCT+TGG - chr2_2:26028680-26028699 None:intergenic 35.0%
! ATTGATATTAACGGATCCCT+CGG + chr2_2:26028684-26028703 Msa0245940:CDS 35.0%
!! TTGCAGTTGATGGATGTAAA+AGG + chr2_2:26028726-26028745 Msa0245940:CDS 35.0%
ACTCATCAAGAGTTAACGAT+AGG - chr2_2:26028785-26028804 None:intergenic 35.0%
TATCGTTAACTCTTGATGAG+TGG + chr2_2:26028784-26028803 Msa0245940:CDS 35.0%
CAATTTCACAGTAGCGTTAA+TGG + chr2_2:26028977-26028996 Msa0245940:CDS 35.0%
ACTTGTATAAGAGCAAGCAT+AGG - chr2_2:26029047-26029066 None:intergenic 35.0%
! ATTGTTGTTGTTCCGTAACT+CGG - chr2_2:26029117-26029136 None:intergenic 35.0%
ACTTCAGTAATCTTGAACTG+AGG - chr2_2:26029230-26029249 None:intergenic 35.0%
CAAGATTACTGAAGTTCATG+TGG + chr2_2:26029235-26029254 Msa0245940:CDS 35.0%
!!! GATGCAGCTTTTGACTTAAT+TGG - chr2_2:26029377-26029396 None:intergenic 35.0%
!!! AGCATTTCTTCACGCTTTTT+TGG + chr2_2:26029449-26029468 Msa0245940:CDS 35.0%
AGACTTAGTTGACTGAAAAG+TGG + chr2_2:26029554-26029573 Msa0245940:exon 35.0%
ATCTATTGCCTGTGATAACA+AGG - chr2_2:26029616-26029635 None:intergenic 35.0%
! TGTTAGAGCATCAATCAAGT+TGG + chr2_2:26029699-26029718 Msa0245940:three_prime_UTR 35.0%
TCACACCTTGCAATTATTGA+AGG - chr2_2:26029731-26029750 None:intergenic 35.0%
TAATTGCAAGGTGTGAAACA+TGG + chr2_2:26029735-26029754 Msa0245940:three_prime_UTR 35.0%
GAAAGTGGTAAGAAGAGTAG+TGG + chr2_2:26025757-26025776 Msa0245940:CDS 40.0%
AAGTGGTAAGAAGAGTAGTG+GGG + chr2_2:26025759-26025778 Msa0245940:CDS 40.0%
!! TAGAAGTGCTTCGAGGAATT+CGG + chr2_2:26025846-26025865 Msa0245940:CDS 40.0%
! AATTCGAGGTCTAAAACAGC+TGG + chr2_2:26025880-26025899 Msa0245940:CDS 40.0%
CTATTACTCCCTTTACCCTT+CGG - chr2_2:26025931-26025950 None:intergenic 40.0%
AGAGGTCTATATGGAATTGG+AGG + chr2_2:26025983-26026002 Msa0245940:CDS 40.0%
TTTCGCATATCCGAAACAAG+AGG + chr2_2:26026019-26026038 Msa0245940:CDS 40.0%
CTCGAACCATCAAAAGTAGA+CGG - chr2_2:26026090-26026109 None:intergenic 40.0%
TTTCAGTGTATTGGAAGAGG+AGG + chr2_2:26026112-26026131 Msa0245940:CDS 40.0%
TTCAGTGTATTGGAAGAGGA+GGG + chr2_2:26026113-26026132 Msa0245940:CDS 40.0%
CTTGTTCGGTTTATGGAAGT+AGG + chr2_2:26026208-26026227 Msa0245940:CDS 40.0%
TTGCTTCATACTTCGCAGAA+TGG - chr2_2:26026245-26026264 None:intergenic 40.0%
!! AACATCGAGTTGATCTTACG+AGG + chr2_2:26026319-26026338 Msa0245940:CDS 40.0%
!! AAGTTTCAGGTTATCGGGAA+AGG + chr2_2:26026401-26026420 Msa0245940:CDS 40.0%
CCCAAAACTGACATTCATCA+CGG - chr2_2:26026436-26026455 None:intergenic 40.0%
! CCGTGATGAATGTCAGTTTT+GGG + chr2_2:26026433-26026452 Msa0245940:CDS 40.0%
!!! AGTTTTGGGTATACGGTTGT+TGG + chr2_2:26026447-26026466 Msa0245940:CDS 40.0%
ATATAAGACGCCTATTGAGC+TGG - chr2_2:26026703-26026722 None:intergenic 40.0%
! TCAGAGGAAGTATATCCATC+TGG - chr2_2:26026813-26026832 None:intergenic 40.0%
CATTATCTTGACGGTCTTCA+GGG - chr2_2:26026983-26027002 None:intergenic 40.0%
TCATTATCTTGACGGTCTTC+AGG - chr2_2:26026984-26027003 None:intergenic 40.0%
AGTAGAGGAGTCATTCTCAA+AGG + chr2_2:26027055-26027074 Msa0245940:CDS 40.0%
!! GCAGGCTTAAAAGTATCTTC+TGG + chr2_2:26027125-26027144 Msa0245940:CDS 40.0%
GATACACGATTCTCTTGATG+AGG + chr2_2:26027157-26027176 Msa0245940:CDS 40.0%
TCTCTTGATGAGGCAAATGA+TGG + chr2_2:26027167-26027186 Msa0245940:CDS 40.0%
TGAGGCAAATGATGGTTGTA+AGG + chr2_2:26027175-26027194 Msa0245940:CDS 40.0%
AGATGAATCCGCTTACAAAG+AGG + chr2_2:26027211-26027230 Msa0245940:CDS 40.0%
TCTCTTGATGAGGCAAATGA+TGG + chr2_2:26027167-26027186 Msa0245940:CDS 40.0%
TGAGGCAAATGATGGTTGTA+AGG + chr2_2:26027175-26027194 Msa0245940:CDS 40.0%
AGATGAATCTGCTTACAGAG+AGG + chr2_2:26027310-26027329 Msa0245940:CDS 40.0%
TGTCTTAAGAGAAGCTCTCT+CGG - chr2_2:26027572-26027591 None:intergenic 40.0%
GATGGCTATGATGCTTCTAA+TGG + chr2_2:26027665-26027684 Msa0245940:CDS 40.0%
AAGATGTGAGGGGAAAACAA+AGG + chr2_2:26027771-26027790 Msa0245940:CDS 40.0%
AGATGTGAGGGGAAAACAAA+GGG + chr2_2:26027772-26027791 Msa0245940:CDS 40.0%
GGCTCAAATGCTAGAAGATT+TGG + chr2_2:26027793-26027812 Msa0245940:CDS 40.0%
AGAAGCCTTAATGCGTCAAT+GGG + chr2_2:26027820-26027839 Msa0245940:CDS 40.0%
TCTCCACCAAAAGATTGTAC+CGG + chr2_2:26027869-26027888 Msa0245940:CDS 40.0%
! AAACCGGTACAATCTTTTGG+TGG - chr2_2:26027875-26027894 None:intergenic 40.0%
!! CCAAAAGATTGTACCGGTTT+CGG + chr2_2:26027875-26027894 Msa0245940:CDS 40.0%
TTGAATTGGACTTCCGAAAC+CGG - chr2_2:26027891-26027910 None:intergenic 40.0%
! CCGTCTTTTGTCTGAAGAAA+AGG - chr2_2:26027965-26027984 None:intergenic 40.0%
TTTCTTCAGACAAAAGACGG+AGG + chr2_2:26027965-26027984 Msa0245940:CDS 40.0%
! GATTAAACTCCCACTAGCTT+TGG - chr2_2:26028029-26028048 None:intergenic 40.0%
TAGTGGGAGTTTAATCATGC+AGG + chr2_2:26028033-26028052 Msa0245940:CDS 40.0%
TTTCTGCAGGTACAACAACA+GGG - chr2_2:26028066-26028085 None:intergenic 40.0%
ATTTCTGCAGGTACAACAAC+AGG - chr2_2:26028067-26028086 None:intergenic 40.0%
TGTTGTTGTACCTGCAGAAA+TGG + chr2_2:26028066-26028085 Msa0245940:CDS 40.0%
GTTGTTGTACCTGCAGAAAT+GGG + chr2_2:26028067-26028086 Msa0245940:CDS 40.0%
! TTACAGTGTTTGGCTTCAGT+TGG + chr2_2:26028109-26028128 Msa0245940:CDS 40.0%
AAAACTCTCAATGCAGGCAA+AGG + chr2_2:26028138-26028157 Msa0245940:CDS 40.0%
AATGCCACTGGAAGATATCA+CGG + chr2_2:26028165-26028184 Msa0245940:CDS 40.0%
GAAACATGTAAGCCCATGTT+TGG - chr2_2:26028336-26028355 None:intergenic 40.0%
TTTGCGCAAAAGGACTTGAA+AGG + chr2_2:26028432-26028451 Msa0245940:CDS 40.0%
AATTGAAGATCTTGCACCGT+TGG + chr2_2:26028533-26028552 Msa0245940:CDS 40.0%
! AATCGAAGCACTTTCAATGG+AGG + chr2_2:26028566-26028585 Msa0245940:CDS 40.0%
! ATCGAAGCACTTTCAATGGA+GGG + chr2_2:26028567-26028586 Msa0245940:CDS 40.0%
GAGGGATTGAGAATACAATC+TGG + chr2_2:26028585-26028604 Msa0245940:CDS 40.0%
CATTGTTGCACAATCCATTG+GGG + chr2_2:26028635-26028654 Msa0245940:CDS 40.0%
TAATATCAATGCCTTGGCCT+TGG - chr2_2:26028674-26028693 None:intergenic 40.0%
!! GGCCAAGGCATTGATATTAA+CGG + chr2_2:26028675-26028694 Msa0245940:CDS 40.0%
GTCGAAAGAGTTAGCATGAT+GGG - chr2_2:26028880-26028899 None:intergenic 40.0%
AGTCGAAAGAGTTAGCATGA+TGG - chr2_2:26028881-26028900 None:intergenic 40.0%
AACTCTTTCGACTTTATCCG+TGG + chr2_2:26028888-26028907 Msa0245940:CDS 40.0%
ACTCTTTCGACTTTATCCGT+GGG + chr2_2:26028889-26028908 Msa0245940:CDS 40.0%
TTTATCCGTGGGAGTTCAAA+AGG + chr2_2:26028900-26028919 Msa0245940:CDS 40.0%
! ACTGGCTCATAATTTCTCAG+AGG - chr2_2:26029017-26029036 None:intergenic 40.0%
CTGAGAAATTATGAGCCAGT+TGG + chr2_2:26029017-26029036 Msa0245940:CDS 40.0%
GGAGAGCAAAATAGTAGCAA+AGG + chr2_2:26029151-26029170 Msa0245940:CDS 40.0%
GAGCAAAATAGTAGCAAAGG+TGG + chr2_2:26029154-26029173 Msa0245940:CDS 40.0%
GATGAAGGACACAGATAAAG+AGG + chr2_2:26029178-26029197 Msa0245940:CDS 40.0%
ATTACTGAAGTTCATGTGGC+AGG + chr2_2:26029239-26029258 Msa0245940:CDS 40.0%
AGCCTCAGAAAAAGAAGCTT+TGG + chr2_2:26029273-26029292 Msa0245940:CDS 40.0%
GCCTCAGAAAAAGAAGCTTT+GGG + chr2_2:26029274-26029293 Msa0245940:CDS 40.0%
CCTCAGAAAAAGAAGCTTTG+GGG + chr2_2:26029275-26029294 Msa0245940:CDS 40.0%
! TGGTTGCTTGCTAATGGAAT+GGG + chr2_2:26029329-26029348 Msa0245940:CDS 40.0%
TGCATCTAAATCGATTGCTC+CGG + chr2_2:26029391-26029410 Msa0245940:CDS 40.0%
!!! TCTTCACGCTTTTTTGGTTC+TGG + chr2_2:26029455-26029474 Msa0245940:CDS 40.0%
CTGGTCCTTCAATAATTGCA+AGG + chr2_2:26029723-26029742 Msa0245940:three_prime_UTR 40.0%
! AAGAAGAGTAGTGGGGTTTC+TGG + chr2_2:26025766-26025785 Msa0245940:CDS 45.0%
!! ACTTGGATAGAAGTGCTTCG+AGG + chr2_2:26025839-26025858 Msa0245940:CDS 45.0%
TTTCCTGATCCGAAACCGAA+GGG + chr2_2:26025913-26025932 Msa0245940:CDS 45.0%
ATCCGAAACCGAAGGGTAAA+GGG + chr2_2:26025920-26025939 Msa0245940:CDS 45.0%
!! ATATGCGAAAGCGCCTTCAA+CGG - chr2_2:26026009-26026028 None:intergenic 45.0%
TCGGTTTATGGAAGTAGGAG+TGG + chr2_2:26026213-26026232 Msa0245940:CDS 45.0%
TCATACTTCGCAGAATGGTG+AGG - chr2_2:26026240-26026259 None:intergenic 45.0%
TGTTTCCCCAAATCAAGCTC+CGG - chr2_2:26026303-26026322 None:intergenic 45.0%
!! GGAAGTGGACTACAAGTTTC+AGG + chr2_2:26026388-26026407 Msa0245940:CDS 45.0%
AGGTTATCGGGAAAGGCTAA+GGG + chr2_2:26026408-26026427 Msa0245940:CDS 45.0%
! GCCGTGATGAATGTCAGTTT+TGG + chr2_2:26026432-26026451 Msa0245940:CDS 45.0%
!! CTCCTAATGTGTTGACTTCG+AGG + chr2_2:26026505-26026524 Msa0245940:CDS 45.0%
TGCCTCGAAGTCAACACATT+AGG - chr2_2:26026510-26026529 None:intergenic 45.0%
AGAGGTAAAGGATCTTCACG+AGG + chr2_2:26026650-26026669 Msa0245940:CDS 45.0%
TCGTTAACTGCATGCACTTC+AGG - chr2_2:26026852-26026871 None:intergenic 45.0%
GAAGTGCATGCAGTTAACGA+TGG + chr2_2:26026852-26026871 Msa0245940:CDS 45.0%
! CATCTGGCTTATCTGTCTCT+AGG - chr2_2:26026929-26026948 None:intergenic 45.0%
CTAGAGACAGATAAGCCAGA+TGG + chr2_2:26026927-26026946 Msa0245940:CDS 45.0%
TCAAGTAAAAGGCAGCCATC+TGG - chr2_2:26026945-26026964 None:intergenic 45.0%
! GGCTGCCTTTTACTTGATTC+TGG + chr2_2:26026948-26026967 Msa0245940:CDS 45.0%
TGGTTGTAAGGATCACTCAG+TGG + chr2_2:26027187-26027206 Msa0245940:CDS 45.0%
GATACACGAGTCTCTTGATG+AGG + chr2_2:26027256-26027275 Msa0245940:CDS 45.0%
TGGTTGTAAGGATCAGTCAG+TGG + chr2_2:26027286-26027305 Msa0245940:CDS 45.0%
TGTCTCAGATTTCGAGACAG+CGG + chr2_2:26027385-26027404 Msa0245940:CDS 45.0%
TTTGAGAAGGAAGCCCTAGA+TGG + chr2_2:26027593-26027612 Msa0245940:CDS 45.0%
TTGAGAAGGAAGCCCTAGAT+GGG + chr2_2:26027594-26027613 Msa0245940:CDS 45.0%
TAAAGAGAAGCCCCCATCTA+GGG - chr2_2:26027609-26027628 None:intergenic 45.0%
ATAAAGAGAAGCCCCCATCT+AGG - chr2_2:26027610-26027629 None:intergenic 45.0%
TGTGAGGATGAAGCTGATGA+TGG + chr2_2:26027647-26027666 Msa0245940:CDS 45.0%
TGAGCAGTGGAATTTCTCTG+AGG + chr2_2:26027691-26027710 Msa0245940:CDS 45.0%
GAGCAGTGGAATTTCTCTGA+GGG + chr2_2:26027692-26027711 Msa0245940:CDS 45.0%
! CTTCTGAAGGTCTTGGAACA+AGG - chr2_2:26027732-26027751 None:intergenic 45.0%
CTTGTTCCAAGACCTTCAGA+AGG + chr2_2:26027730-26027749 Msa0245940:CDS 45.0%
TCGTTGAGTCTCAAGATGTG+AGG + chr2_2:26027759-26027778 Msa0245940:CDS 45.0%
CGTTGAGTCTCAAGATGTGA+GGG + chr2_2:26027760-26027779 Msa0245940:CDS 45.0%
GTTGAGTCTCAAGATGTGAG+GGG + chr2_2:26027761-26027780 Msa0245940:CDS 45.0%
CAGAAGCCTTAATGCGTCAA+TGG + chr2_2:26027819-26027838 Msa0245940:CDS 45.0%
GAAGCCTTAATGCGTCAATG+GGG + chr2_2:26027821-26027840 Msa0245940:CDS 45.0%
CAAACCCCATTGACGCATTA+AGG - chr2_2:26027828-26027847 None:intergenic 45.0%
TCAATGGGGTTTGAACGAGA+AGG + chr2_2:26027835-26027854 Msa0245940:CDS 45.0%
! CCGAAACCGGTACAATCTTT+TGG - chr2_2:26027878-26027897 None:intergenic 45.0%
! AGAAATGGGTTCCGGGATAA+TGG + chr2_2:26028081-26028100 Msa0245940:CDS 45.0%
ATGCCACTGGAAGATATCAC+GGG + chr2_2:26028166-26028185 Msa0245940:CDS 45.0%
!! CTTTCTGTTCCTTCTAAGGC+AGG - chr2_2:26028226-26028245 None:intergenic 45.0%
CTGCCTTAGAAGGAACAGAA+AGG + chr2_2:26028224-26028243 Msa0245940:CDS 45.0%
TTGAAAGGAACACCACCATC+TGG + chr2_2:26028447-26028466 Msa0245940:CDS 45.0%
AAACAAACTCTGAGCCTGTG+TGG - chr2_2:26028512-26028531 None:intergenic 45.0%
! AATACAATCTGGGATGTCCG+AGG + chr2_2:26028596-26028615 Msa0245940:CDS 45.0%
GTAAAAGGCAGCAGTGATGT+TGG + chr2_2:26028741-26028760 Msa0245940:CDS 45.0%
!! AGCAGTGATGTTGGTGTTGA+CGG + chr2_2:26028750-26028769 Msa0245940:CDS 45.0%
TCTTGATGAGTGGATGAAGC+TGG + chr2_2:26028794-26028813 Msa0245940:CDS 45.0%
GGAGTTCAAAAGGAGGAGTT+AGG + chr2_2:26028910-26028929 Msa0245940:CDS 45.0%
! TAGCAAACCGCATTTTCTGC+CGG - chr2_2:26028952-26028971 None:intergenic 45.0%
TTTGTAGCGTGTCCGAGTTA+CGG + chr2_2:26029102-26029121 Msa0245940:CDS 45.0%
ACGGAACAACAACAATGACG+AGG + chr2_2:26029121-26029140 Msa0245940:CDS 45.0%
AGTAGCAAAGGTGGAGATGA+AGG + chr2_2:26029163-26029182 Msa0245940:CDS 45.0%
!!! AGCTTCTTTTTCTGAGGCTC+AGG - chr2_2:26029272-26029291 None:intergenic 45.0%
! CCCCAAAGCTTCTTTTTCTG+AGG - chr2_2:26029278-26029297 None:intergenic 45.0%
! TGCAGCAACAATCTGGTTCA+CGG + chr2_2:26029306-26029325 Msa0245940:CDS 45.0%
! GTGGTTGCTTGCTAATGGAA+TGG + chr2_2:26029328-26029347 Msa0245940:CDS 45.0%
! GGTTGCTTGCTAATGGAATG+GGG + chr2_2:26029330-26029349 Msa0245940:CDS 45.0%
!! GAGCATCAATCAAGTTGGAC+TGG + chr2_2:26029704-26029723 Msa0245940:three_prime_UTR 45.0%
GTTTCCTGATCCGAAACCGA+AGG + chr2_2:26025912-26025931 Msa0245940:CDS 50.0%
TTACCCTTCGGTTTCGGATC+AGG - chr2_2:26025919-26025938 None:intergenic 50.0%
GATCCGAAACCGAAGGGTAA+AGG + chr2_2:26025919-26025938 Msa0245940:CDS 50.0%
CTCCCTTTACCCTTCGGTTT+CGG - chr2_2:26025925-26025944 None:intergenic 50.0%
ATGGAATTGGAGGCCGTTGA+AGG + chr2_2:26025993-26026012 Msa0245940:CDS 50.0%
!! GGGTTGCCGTCTACTTTTGA+TGG + chr2_2:26026081-26026100 Msa0245940:CDS 50.0%
GTGTATTGGAAGAGGAGGGA+CGG + chr2_2:26026117-26026136 Msa0245940:CDS 50.0%
TGTATTGGAAGAGGAGGGAC+GGG + chr2_2:26026118-26026137 Msa0245940:CDS 50.0%
ACACACTGAACCACCTTAGC+CGG - chr2_2:26026159-26026178 None:intergenic 50.0%
GAGGTTGCTTCCTCTCACTT+TGG + chr2_2:26026338-26026357 Msa0245940:CDS 50.0%
GTTGCTTCCTCTCACTTTGG+AGG + chr2_2:26026341-26026360 Msa0245940:CDS 50.0%
TCAAGCTCCTCCAAAGTGAG+AGG - chr2_2:26026351-26026370 None:intergenic 50.0%
! TCTCACTTTGGAGGAGCTTG+AGG + chr2_2:26026350-26026369 Msa0245940:CDS 50.0%
CAGGTTATCGGGAAAGGCTA+AGG + chr2_2:26026407-26026426 Msa0245940:CDS 50.0%
!! TGTTGGTGATAACACCAGCG+CGG + chr2_2:26026464-26026483 Msa0245940:CDS 50.0%
TTGATGGAAGCAGCAGCATG+AGG + chr2_2:26026574-26026593 Msa0245940:CDS 50.0%
TCAAGCTGCGGAAGAGGTAA+AGG + chr2_2:26026638-26026657 Msa0245940:CDS 50.0%
GCTAGTGCAGACTTAGACGA+TGG - chr2_2:26026681-26026700 None:intergenic 50.0%
TCTGCACTAGCCAGCTCAAT+AGG + chr2_2:26026690-26026709 Msa0245940:CDS 50.0%
CTCGAGCCAATCAAACCAGA+TGG + chr2_2:26026795-26026814 Msa0245940:CDS 50.0%
AGTTCAGGTGTGTCAAGCAC+TGG - chr2_2:26026888-26026907 None:intergenic 50.0%
! TTTTCAGAATCCGAGCCTGC+TGG - chr2_2:26027536-26027555 None:intergenic 50.0%
! CTCGGATTCTGAAAACGAGC+CGG + chr2_2:26027541-26027560 Msa0245940:CDS 50.0%
TGAGAAGGAAGCCCTAGATG+GGG + chr2_2:26027595-26027614 Msa0245940:CDS 50.0%
!! CTTCTAATGGCTCTGAGCAG+TGG + chr2_2:26027678-26027697 Msa0245940:CDS 50.0%
! GATGCTCCTTCTGAAGGTCT+TGG - chr2_2:26027739-26027758 None:intergenic 50.0%
CAACGAGATGCTCCTTCTGA+AGG - chr2_2:26027745-26027764 None:intergenic 50.0%
AACGTAGGAAGCTCTTCAGG+TGG - chr2_2:26027917-26027936 None:intergenic 50.0%
CGGAGGCTATCTACGATCTA+TGG + chr2_2:26027982-26028001 Msa0245940:CDS 50.0%
TGCAGGTACAACAACAGGGT+TGG - chr2_2:26028062-26028081 None:intergenic 50.0%
! GTACCTGCAGAAATGGGTTC+CGG + chr2_2:26028073-26028092 Msa0245940:CDS 50.0%
! TACCTGCAGAAATGGGTTCC+GGG + chr2_2:26028074-26028093 Msa0245940:CDS 50.0%
GGCAAAGGAGTTAATGCCAC+TGG + chr2_2:26028153-26028172 Msa0245940:CDS 50.0%
TGCCACTGGAAGATATCACG+GGG + chr2_2:26028167-26028186 Msa0245940:CDS 50.0%
TTCCCCGTGATATCTTCCAG+TGG - chr2_2:26028172-26028191 None:intergenic 50.0%
GAAGCTATGCCTGCCTTAGA+AGG + chr2_2:26028214-26028233 Msa0245940:CDS 50.0%
TTGCTGGACTTCAGTCCAGA+TGG - chr2_2:26028465-26028484 None:intergenic 50.0%
AAACTCTGAGCCTGTGTGGT+TGG - chr2_2:26028508-26028527 None:intergenic 50.0%
GTTAGATGGTGCATCCTCCT+CGG - chr2_2:26028616-26028635 None:intergenic 50.0%
GAGAGCTGACATTTCCCCAA+TGG - chr2_2:26028652-26028671 None:intergenic 50.0%
! TATTAACGGATCCCTCGGCA+TGG + chr2_2:26028689-26028708 Msa0245940:CDS 50.0%
!! AGCTGCTGGTTTGCAGTTGA+TGG + chr2_2:26028716-26028735 Msa0245940:CDS 50.0%
!! GCAGTGATGTTGGTGTTGAC+GGG + chr2_2:26028751-26028770 Msa0245940:CDS 50.0%
GAGTGGATGAAGCTGGATTC+TGG + chr2_2:26028801-26028820 Msa0245940:CDS 50.0%
ATCCGTGGGAGTTCAAAAGG+AGG + chr2_2:26028903-26028922 Msa0245940:CDS 50.0%
! CTCCTCCTTTTGAACTCCCA+CGG - chr2_2:26028908-26028927 None:intergenic 50.0%
! GGCAGAAAATGCGGTTTGCT+AGG + chr2_2:26028951-26028970 Msa0245940:CDS 50.0%
GCAAGCATAGGTGTTCCAAC+TGG - chr2_2:26029035-26029054 None:intergenic 50.0%
ACCTCGATGCAGCAACAATC+TGG + chr2_2:26029299-26029318 Msa0245940:CDS 50.0%
ACCAGATTGTTGCTGCATCG+AGG - chr2_2:26029303-26029322 None:intergenic 50.0%
! AGCAACAATCTGGTTCACGG+TGG + chr2_2:26029309-26029328 Msa0245940:CDS 50.0%
! TCACGGTGGTTGCTTGCTAA+TGG + chr2_2:26029323-26029342 Msa0245940:CDS 50.0%
! TGCTCCACAAAGTGTCAGCA+GGG - chr2_2:26029433-26029452 None:intergenic 50.0%
! ATGCTCCACAAAGTGTCAGC+AGG - chr2_2:26029434-26029453 None:intergenic 50.0%
!! GCTTCGAGGAATTCGGTGTC+TGG + chr2_2:26025853-26025872 Msa0245940:CDS 55.0%
! CGGTGTCTGGTTCGAATTCG+AGG + chr2_2:26025866-26025885 Msa0245940:CDS 55.0%
GTATTGGAAGAGGAGGGACG+GGG + chr2_2:26026119-26026138 Msa0245940:CDS 55.0%
! TTTGGTGACTCGTCCGGCTA+AGG + chr2_2:26026143-26026162 Msa0245940:CDS 55.0%
GGCTAAGGTGGTTCAGTGTG+TGG + chr2_2:26026158-26026177 Msa0245940:CDS 55.0%
AGTGCGCCGGAGCTTGATTT+GGG + chr2_2:26026294-26026313 Msa0245940:CDS 55.0%
! CACTTTGGAGGAGCTTGAGG+AGG + chr2_2:26026353-26026372 Msa0245940:CDS 55.0%
GCTTGAGGAGGAGAAGAGCT+CGG + chr2_2:26026365-26026384 Msa0245940:CDS 55.0%
CTTGAGGAGGAGAAGAGCTC+GGG + chr2_2:26026366-26026385 Msa0245940:CDS 55.0%
TTGAGGAGGAGAAGAGCTCG+GGG + chr2_2:26026367-26026386 Msa0245940:CDS 55.0%
AACACCAGCGCGGCAAAAGA+TGG + chr2_2:26026474-26026493 Msa0245940:CDS 55.0%
ATGGAAGCAGCAGCATGAGG+CGG + chr2_2:26026577-26026596 Msa0245940:CDS 55.0%
TCGGTACTCGTCTCAAGCTG+CGG + chr2_2:26026626-26026645 Msa0245940:CDS 55.0%
! AGAAAAGGCGTGCAGCTCTC+TGG + chr2_2:26026737-26026756 Msa0245940:CDS 55.0%
ATCCGAGCCTGCTGGACTAT+GGG - chr2_2:26027528-26027547 None:intergenic 55.0%
AATCCGAGCCTGCTGGACTA+TGG - chr2_2:26027529-26027548 None:intergenic 55.0%
AGAAGCTCTCTCGGAGACTC+CGG - chr2_2:26027563-26027582 None:intergenic 55.0%
GAGAAGGAAGCCCTAGATGG+GGG + chr2_2:26027596-26027615 Msa0245940:CDS 55.0%
GGCAACGTAGGAAGCTCTTC+AGG - chr2_2:26027920-26027939 None:intergenic 55.0%
AAGAAAAGGGCCCAACCCCT+CGG - chr2_2:26027951-26027970 None:intergenic 55.0%
ATCCCGGAACCCATTTCTGC+AGG - chr2_2:26028079-26028098 None:intergenic 55.0%
CTGGACTTCAGTCCAGATGG+TGG - chr2_2:26028462-26028481 None:intergenic 55.0%
! AATTCGGTGGCCAACCACAC+AGG + chr2_2:26028495-26028514 Msa0245940:CDS 55.0%
! ACAATCTGGGATGTCCGAGG+AGG + chr2_2:26028599-26028618 Msa0245940:CDS 55.0%
GGGGAAATGTCAGCTCTCCA+AGG + chr2_2:26028654-26028673 Msa0245940:CDS 55.0%
ATGTCAGCTCTCCAAGGCCA+AGG + chr2_2:26028660-26028679 Msa0245940:CDS 55.0%
GGAGTTAGGAGACGAAGCAG+AGG + chr2_2:26028924-26028943 Msa0245940:CDS 55.0%
AGAGGCTCCGGCAGAAAATG+CGG + chr2_2:26028942-26028961 Msa0245940:CDS 55.0%
CAACAATGACGAGGACGACG+AGG + chr2_2:26029130-26029149 Msa0245940:CDS 55.0%
GATTGCTCCGGTTACCGCAA+AGG + chr2_2:26029403-26029422 Msa0245940:CDS 55.0%
CATCCCCTGCTGACACTTTG+TGG + chr2_2:26029426-26029445 Msa0245940:CDS 55.0%
! GCTCCACAAAGTGTCAGCAG+GGG - chr2_2:26029432-26029451 None:intergenic 55.0%
! GAAGAGGAGGGACGGGGTTT+TGG + chr2_2:26026125-26026144 Msa0245940:CDS 60.0%
!! CGGGGTTTTGGTGACTCGTC+CGG + chr2_2:26026137-26026156 Msa0245940:CDS 60.0%
TGCTTCGCTTCTCAGTGCGC+CGG + chr2_2:26026281-26026300 Msa0245940:CDS 60.0%
CAGTGCGCCGGAGCTTGATT+TGG + chr2_2:26026293-26026312 Msa0245940:CDS 60.0%
! GTGCGCCGGAGCTTGATTTG+GGG + chr2_2:26026295-26026314 Msa0245940:CDS 60.0%
AGGAGAAGAGCTCGGGGAAG+TGG + chr2_2:26026373-26026392 Msa0245940:CDS 60.0%
! ATGGCCATCTTTTGCCGCGC+TGG - chr2_2:26026481-26026500 None:intergenic 60.0%
TGGAAGCAGCAGCATGAGGC+GGG + chr2_2:26026578-26026597 Msa0245940:CDS 60.0%
CTCGTCTCAAGCTGCGGAAG+AGG + chr2_2:26026632-26026651 Msa0245940:CDS 60.0%
GACACAGCCCATAGTCCAGC+AGG + chr2_2:26027518-26027537 Msa0245940:CDS 60.0%
AGCCCATAGTCCAGCAGGCT+CGG + chr2_2:26027523-26027542 Msa0245940:CDS 60.0%
TCGGCAAGAGGAGGCAACGT+AGG - chr2_2:26027932-26027951 None:intergenic 60.0%
TACGTTGCCTCCTCTTGCCG+AGG + chr2_2:26027931-26027950 Msa0245940:CDS 60.0%
ACGTTGCCTCCTCTTGCCGA+GGG + chr2_2:26027932-26027951 Msa0245940:CDS 60.0%
AACGGATCCCTCGGCATGGA+AGG + chr2_2:26028693-26028712 Msa0245940:CDS 60.0%
AGCAGCTCCTTCCATGCCGA+GGG - chr2_2:26028703-26028722 None:intergenic 60.0%
AGGAGACGAAGCAGAGGCTC+CGG + chr2_2:26028930-26028949 Msa0245940:CDS 60.0%
GGGGATGCCTTTGCGGTAAC+CGG - chr2_2:26029413-26029432 None:intergenic 60.0%
GTCAGCAGGGGATGCCTTTG+CGG - chr2_2:26029420-26029439 None:intergenic 60.0%
GGTGACTCGTCCGGCTAAGG+TGG + chr2_2:26026146-26026165 Msa0245940:CDS 65.0%
CGTTGCCTCCTCTTGCCGAG+GGG + chr2_2:26027933-26027952 Msa0245940:CDS 65.0%
CCTCCTCTTGCCGAGGGGTT+GGG + chr2_2:26027938-26027957 Msa0245940:CDS 65.0%
CAGCAGCTCCTTCCATGCCG+AGG - chr2_2:26028704-26028723 None:intergenic 65.0%
CTCGGCATGGAAGGAGCTGC+TGG + chr2_2:26028702-26028721 Msa0245940:CDS 65.0%
CTTGGCACAGGCTCCCCAGA+TGG - chr2_2:26029665-26029684 None:intergenic 65.0%
AGCAGCAGCATGAGGCGGGC+CGG + chr2_2:26026582-26026601 Msa0245940:CDS 70.0%
GCCTCCTCTTGCCGAGGGGT+TGG + chr2_2:26027937-26027956 Msa0245940:CDS 70.0%
CCCAACCCCTCGGCAAGAGG+AGG - chr2_2:26027941-26027960 None:intergenic 70.0%
GGGCCCAACCCCTCGGCAAG+AGG - chr2_2:26027944-26027963 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 26025754 26029943 26025754 ID=Msa0245940;Name=Msa0245940
chr2_2 mRNA 26025754 26029943 26025754 ID=Msa0245940-mRNA-1;Parent=Msa0245940;Name=Msa0245940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.5|1|1|1|2|378|1223
chr2_2 exon 26025754 26028245 26025754 ID=Msa0245940-mRNA-1:exon:9730;Parent=Msa0245940-mRNA-1
chr2_2 exon 26028386 26029943 26028386 ID=Msa0245940-mRNA-1:exon:9731;Parent=Msa0245940-mRNA-1
chr2_2 CDS 26025754 26028245 26025754 ID=Msa0245940-mRNA-1:cds;Parent=Msa0245940-mRNA-1
chr2_2 CDS 26028386 26029565 26028386 ID=Msa0245940-mRNA-1:cds;Parent=Msa0245940-mRNA-1
chr2_2 three_prime_UTR 26029566 26029943 26029566 ID=Msa0245940-mRNA-1:three_prime_utr;Parent=Msa0245940-mRNA-1
Gene Sequence

>Msa0245940

ATGGAAAGTGGTAAGAAGAGTAGTGGGGTTTCTGGTAGTCAAAAGAAATTGTTAAAGGATGTTGAAACTATGAATAAAGCTATGTACTTGGATAGAAGTGCTTCGAGGAATTCGGTGTCTGGTTCGAATTCGAGGTCTAAAACAGCTGGAAAATCGTTGTTTCCTGATCCGAAACCGAAGGGTAAAGGGAGTAATAGTAATGATGATCATGATAGTTTGCAGAAGGATAAGAGGTCTATATGGAATTGGAGGCCGTTGAAGGCGCTTTCGCATATCCGAAACAAGAGGTTTAATTGTAGTTTTTATCTTCATGTACATTTGATTGAAGGGTTGCCGTCTACTTTTGATGGTTCGAGTTTTTCAGTGTATTGGAAGAGGAGGGACGGGGTTTTGGTGACTCGTCCGGCTAAGGTGGTTCAGTGTGTGGCTGAATTTGATGAGAAGTTGACTTATACTTGTTCGGTTTATGGAAGTAGGAGTGGACCTCACCATTCTGCGAAGTATGAAGCAAAGCATTTTTTGCTTTATGCTTCGCTTCTCAGTGCGCCGGAGCTTGATTTGGGGAAACATCGAGTTGATCTTACGAGGTTGCTTCCTCTCACTTTGGAGGAGCTTGAGGAGGAGAAGAGCTCGGGGAAGTGGACTACAAGTTTCAGGTTATCGGGAAAGGCTAAGGGTGCCGTGATGAATGTCAGTTTTGGGTATACGGTTGTTGGTGATAACACCAGCGCGGCAAAAGATGGCCATAATGCTCCTAATGTGTTGACTTCGAGGCAGAATAGTCTTGCGTTGACGAAGCCAGATGTTAAACAAAGACAGTTTGATGGAAGCAGCAGCATGAGGCGGGCCGGAAGTTTACAAAACTATAGCAGTCGGTACTCGTCTCAAGCTGCGGAAGAGGTAAAGGATCTTCACGAGGTGTTGCCATCGTCTAAGTCTGCACTAGCCAGCTCAATAGGCGTCTTATATAAGAAATTCGATGAAGAAAAGGCGTGCAGCTCTCTGGACAATGAATCTGATCCTGATTTGTCAAAAGAAAATCTCGAGCCAATCAAACCAGATGGATATACTTCCTCTGATATCAGAAAAGAAACGCCTGAAGTGCATGCAGTTAACGATGGAAATACATGTCCAGTGCTTGACACACCTGAACTTGATGCATTTCATGAAAACCTAGAGACAGATAAGCCAGATGGCTGCCTTTTACTTGATTCTGGAAAAGAAAACCCTGAAGACCGTCAAGATAATGAATTTTTTGTTGTTGATAAGGGTATAGAAATGTCATCAATTGAACCTGTTAAAGTAGAGGAGTCATTCTCAAAGGCTTCTGAAGATACTTCTACAGTTGATAGTACTTTTACCTATGATACTGCAGGCTTAAAAGTATCTTCTGGAGATAGTTTGATACACGATTCTCTTGATGAGGCAAATGATGGTTGTAAGGATCACTCAGTGGTAGATGAATCCGCTTACAAAGAGGATGAATCTTCTGGAGATAGTTTGATACACGAGTCTCTTGATGAGGCAAATGATGGTTGTAAGGATCAGTCAGTGGTAGATGAATCTGCTTACAGAGAGGATGACTTATTCACAAATGAACTGCTGCAAGAATTAGAATCAGCTATAAATAGTGTCTCAGATTTCGAGACAGCGGCTCTAGAATCTCCTAAAGTTGCGGAATTCAAATCTGAATATAAGATGAGAAAGACACATAGCTTTGATGATGTTACAGAATCGGTTGCAAATGAGTTTTTAAGCATGCTAGACACAGCCCATAGTCCAGCAGGCTCGGATTCTGAAAACGAGCCGGAGTCTCCGAGAGAGCTTCTCTTAAGACAGTTTGAGAAGGAAGCCCTAGATGGGGGCTTCTCTTTATTTGATTTTGATATGGACTGTGAGGATGAAGCTGATGATGGCTATGATGCTTCTAATGGCTCTGAGCAGTGGAATTTCTCTGAGGGTATGCACTCATCATCCTTGTTCCAAGACCTTCAGAAGGAGCATCTCGTTGAGTCTCAAGATGTGAGGGGAAAACAAAGGGCTCAAATGCTAGAAGATTTGGAAACAGAAGCCTTAATGCGTCAATGGGGTTTGAACGAGAAGGCTTTTCATCATTCTCCACCAAAAGATTGTACCGGTTTCGGAAGTCCAATTCAATTACCACCTGAAGAGCTTCCTACGTTGCCTCCTCTTGCCGAGGGGTTGGGCCCTTTTCTTCAGACAAAAGACGGAGGCTATCTACGATCTATGGATCCCTCAATTTTCAAGAATACCAAAGCTAGTGGGAGTTTAATCATGCAGGTTTCCAACCCTGTTGTTGTACCTGCAGAAATGGGTTCCGGGATAATGGAAGTTTTACAGTGTTTGGCTTCAGTTGGAATTGAAAAACTCTCAATGCAGGCAAAGGAGTTAATGCCACTGGAAGATATCACGGGGAAGACAATACAACAAGTAGCATGGGAAGCTATGCCTGCCTTAGAAGGAACAGAAAGGCAATGTCATTTGCAGCATGATTCAATAATAGGTCAAGATACAACTTTTGCGCAAAAGGACTTGAAAGGAACACCACCATCTGGACTGAAGTCCAGCAATTTCAATTCAAATTCGGTGGCCAACCACACAGGCTCAGAGTTTGTTTCAATTGAAGATCTTGCACCGTTGGCTATGAACAAAATCGAAGCACTTTCAATGGAGGGATTGAGAATACAATCTGGGATGTCCGAGGAGGATGCACCATCTAACATTGTTGCACAATCCATTGGGGAAATGTCAGCTCTCCAAGGCCAAGGCATTGATATTAACGGATCCCTCGGCATGGAAGGAGCTGCTGGTTTGCAGTTGATGGATGTAAAAGGCAGCAGTGATGTTGGTGTTGACGGGATAATGAGCCTATCGTTAACTCTTGATGAGTGGATGAAGCTGGATTCTGGTGACATTGACGATGTCGATAATATCAGTGAGCATACTTCGAAACTTCTTGCAGCCCATCATGCTAACTCTTTCGACTTTATCCGTGGGAGTTCAAAAGGAGGAGTTAGGAGACGAAGCAGAGGCTCCGGCAGAAAATGCGGTTTGCTAGGAAACAATTTCACAGTAGCGTTAATGGTGCAGCTTCGTGATCCTCTGAGAAATTATGAGCCAGTTGGAACACCTATGCTTGCTCTTATACAAGTTGAGCGAGAGTTTGTCTTGCCAAAGCAAAAAATATTTTGTAGCGTGTCCGAGTTACGGAACAACAACAATGACGAGGACGACGAGGAGAGCAAAATAGTAGCAAAGGTGGAGATGAAGGACACAGATAAAGAGGATAAAATTTCTGAAGCAGAACTCATTCCTCAGTTCAAGATTACTGAAGTTCATGTGGCAGGTCTTACACCTGAGCCTCAGAAAAAGAAGCTTTGGGGCACCTCGATGCAGCAACAATCTGGTTCACGGTGGTTGCTTGCTAATGGAATGGGGAAGAACAATAATAAGTTTCAACCAATTAAGTCAAAAGCTGCATCTAAATCGATTGCTCCGGTTACCGCAAAGGCATCCCCTGCTGACACTTTGTGGAGCATTTCTTCACGCTTTTTTGGTTCTGGTAAAAAAGGGAAAGAATCGGAAACACAAAATCTACATACAAGAAACCCTAATGTCATTATACCAAATGACACAAATAGACTTAGTTGA
Protein sequence

>Msa0245940

MESGKKSSGVSGSQKKLLKDVETMNKAMYLDRSASRNSVSGSNSRSKTAGKSLFPDPKPKGKGSNSNDDHDSLQKDKRSIWNWRPLKALSHIRNKRFNCSFYLHVHLIEGLPSTFDGSSFSVYWKRRDGVLVTRPAKVVQCVAEFDEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGKAKGAVMNVSFGYTVVGDNTSAAKDGHNAPNVLTSRQNSLALTKPDVKQRQFDGSSSMRRAGSLQNYSSRYSSQAAEEVKDLHEVLPSSKSALASSIGVLYKKFDEEKACSSLDNESDPDLSKENLEPIKPDGYTSSDIRKETPEVHAVNDGNTCPVLDTPELDAFHENLETDKPDGCLLLDSGKENPEDRQDNEFFVVDKGIEMSSIEPVKVEESFSKASEDTSTVDSTFTYDTAGLKVSSGDSLIHDSLDEANDGCKDHSVVDESAYKEDESSGDSLIHESLDEANDGCKDQSVVDESAYREDDLFTNELLQELESAINSVSDFETAALESPKVAEFKSEYKMRKTHSFDDVTESVANEFLSMLDTAHSPAGSDSENEPESPRELLLRQFEKEALDGGFSLFDFDMDCEDEADDGYDASNGSEQWNFSEGMHSSSLFQDLQKEHLVESQDVRGKQRAQMLEDLETEALMRQWGLNEKAFHHSPPKDCTGFGSPIQLPPEELPTLPPLAEGLGPFLQTKDGGYLRSMDPSIFKNTKASGSLIMQVSNPVVVPAEMGSGIMEVLQCLASVGIEKLSMQAKELMPLEDITGKTIQQVAWEAMPALEGTERQCHLQHDSIIGQDTTFAQKDLKGTPPSGLKSSNFNSNSVANHTGSEFVSIEDLAPLAMNKIEALSMEGLRIQSGMSEEDAPSNIVAQSIGEMSALQGQGIDINGSLGMEGAAGLQLMDVKGSSDVGVDGIMSLSLTLDEWMKLDSGDIDDVDNISEHTSKLLAAHHANSFDFIRGSSKGGVRRRSRGSGRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFVLPKQKIFCSVSELRNNNNDEDDEESKIVAKVEMKDTDKEDKISEAELIPQFKITEVHVAGLTPEPQKKKLWGTSMQQQSGSRWLLANGMGKNNNKFQPIKSKAASKSIAPVTAKASPADTLWSISSRFFGSGKKGKESETQNLHTRNPNVIIPNDTNRLS*