AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1314340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1314340 MtrunA17_Chr8g0343561 96.875 224 7 0 1 224 1 224 9.53e-157 433
Msa1314340 MtrunA17_Chr2g0300321 84.821 224 33 1 1 224 1 223 1.86e-116 331
Msa1314340 MtrunA17_Chr1g0183621 41.553 219 117 1 4 222 7 214 1.66e-51 166
Msa1314340 MtrunA17_Chr2g0303251 39.732 224 122 3 4 224 3 216 2.18e-43 145
Msa1314340 MtrunA17_Chr7g0261511 45.662 219 108 2 4 222 3 210 6.94e-42 141
Msa1314340 MtrunA17_Chr4g0028231 27.602 221 157 3 4 222 7 226 4.48e-18 79.7
Msa1314340 MtrunA17_Chr2g0330571 25.882 170 114 2 53 222 45 202 6.54e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1314340 AT2G06530.1 87.556 225 26 2 1 224 2 225 2.98e-124 351
Msa1314340 AT2G06530.2 88.293 205 22 2 21 224 1 204 2.92e-111 317
Msa1314340 AT1G03950.1 42.534 221 112 4 4 222 3 210 6.69e-53 169
Msa1314340 AT5G44560.1 38.914 221 134 1 4 224 3 222 1.20e-46 154
Msa1314340 AT5G44560.4 41.477 176 103 0 4 179 3 178 8.21e-44 145
Msa1314340 AT5G44560.2 39.500 200 120 1 25 224 4 202 1.44e-41 140
Msa1314340 AT5G44560.3 37.143 140 87 1 4 142 3 142 2.46e-25 97.4
Msa1314340 AT5G22950.1 29.167 216 148 3 11 222 14 228 1.24e-17 79.0
Msa1314340 AT1G17730.1 24.490 196 134 2 27 222 19 200 1.92e-12 64.3
Msa1314340 AT3G45000.1 25.243 206 132 6 26 222 7 199 7.23e-11 60.1

Find 50 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGATGCGTAGGAATATT+TGG 0.269014 8_4:+13306880 Msa1314340:exon
GGGTGTTGCTTTGAGAATTC+AGG 0.273393 8_4:+13305593 Msa1314340:CDS
AGCGCTATTGCAAACAAAAT+TGG 0.291580 8_4:+13304365 Msa1314340:five_prime_UTR
CAAGCTTAAATCACAACTTC+AGG 0.310848 8_4:+13305572 Msa1314340:CDS
AAATACCATTTGTCCTTGTT+TGG 0.313748 8_4:-13304786 None:intergenic
CTGTGCCAGCAGCAAAGAAC+AGG 0.349780 8_4:+13306776 Msa1314340:CDS
TTAGGGTGCTGTGAGGGTTA+TGG 0.358019 8_4:+13305506 Msa1314340:intron
ATCATCATTGCCCGTTGGTT+CGG 0.375176 8_4:-13306809 None:intergenic
TGCTGCTGGCACAGCGGTTG+AGG 0.378473 8_4:-13306767 None:intergenic
GGAACTTGTTTCTGAGGTAA+TGG 0.405606 8_4:+13306217 Msa1314340:CDS
GAACTTGTTTCTGAGGTAAT+GGG 0.408793 8_4:+13306218 Msa1314340:CDS
TGCATTATCTTCTGTAAAGA+AGG 0.410358 8_4:-13306167 None:intergenic
GCAATTGATGATGCTTTAGA+AGG 0.423361 8_4:+13306245 Msa1314340:CDS
AAGCAATGGGTCAAATGAAT+AGG 0.427096 8_4:+13306132 Msa1314340:CDS
CTGAAATCTACTCAAGCAAT+GGG 0.427818 8_4:+13306086 Msa1314340:CDS
GCAACCCTGTTCTTTGCTGC+TGG 0.429757 8_4:-13306781 None:intergenic
AGCAAAGAACAGGGTTGCTC+AGG 0.453290 8_4:+13306786 Msa1314340:CDS
GTTGCTCAGGCCGAACCAAC+GGG 0.456495 8_4:+13306799 Msa1314340:CDS
GAATGCCAAACAAGGACAAA+TGG 0.480489 8_4:+13304781 Msa1314340:CDS
AAAGGAGTTGCTAAAGCAAT+GGG 0.494814 8_4:+13306119 Msa1314340:CDS
AGTCTATTAGAGAAATTGAA+AGG 0.508512 8_4:+13304705 Msa1314340:CDS
TGAAAGGCAGAATGAGAAGA+TGG 0.511267 8_4:+13306196 Msa1314340:CDS
AGATAATGCAAGAGTTTGAA+AGG 0.512294 8_4:+13306180 Msa1314340:CDS
AAGCTTAAATCACAACTTCA+GGG 0.512790 8_4:+13305573 Msa1314340:CDS
TTTAGAAGGTGATGAAGAAG+AGG 0.518323 8_4:+13306259 Msa1314340:CDS
GAACCAACGGGCAATGATGA+TGG 0.518414 8_4:+13306811 Msa1314340:CDS
GGTTGCTCAGGCCGAACCAA+CGG 0.520072 8_4:+13306798 Msa1314340:CDS
TGCTGTGAGGGTTATGGCCA+AGG 0.523944 8_4:+13305512 Msa1314340:CDS
GCGAGTTCTGATAAGATCCT+TGG 0.528182 8_4:-13305529 None:intergenic
GAAAGGAGTTGCTAAAGCAA+TGG 0.530228 8_4:+13306118 Msa1314340:CDS
GTCTATTAGAGAAATTGAAA+GGG 0.532893 8_4:+13304706 Msa1314340:CDS
ACAGCGGTTGAGGTTGATGC+AGG 0.540829 8_4:-13306757 None:intergenic
CCACCATCATCATTGCCCGT+TGG 0.548023 8_4:-13306814 None:intergenic
AATTTGTTAGGGTGCTGTGA+GGG 0.568995 8_4:+13305500 Msa1314340:intron
AATCAAGTTCTTGATGAGAT+CGG 0.569717 8_4:+13306302 Msa1314340:CDS
CTAAGGAAAATGTGATGCGT+AGG 0.571602 8_4:+13306871 Msa1314340:exon
AGACTAGGTTAGATAACCTA+AGG 0.575086 8_4:+13306854 Msa1314340:CDS
GAAGATGGAACTTGTTTCTG+AGG 0.576457 8_4:+13306211 Msa1314340:CDS
CAATTTGTTAGGGTGCTGTG+AGG 0.590012 8_4:+13305499 Msa1314340:intron
GGAATTGCACAGTAGAGCAT+AGG 0.604816 8_4:+13304386 Msa1314340:five_prime_UTR
ACTGAAATCTACTCAAGCAA+TGG 0.611599 8_4:+13306085 Msa1314340:CDS
GAAATCTACTCAAGCAATGG+GGG 0.624835 8_4:+13306088 Msa1314340:CDS
ATTAAGAAGAATGCCAAACA+AGG 0.625704 8_4:+13304773 Msa1314340:CDS
CCAACGGGCAATGATGATGG+TGG 0.626681 8_4:+13306814 Msa1314340:CDS
GAAATTGAAAGGGAAAGACA+AGG 0.636711 8_4:+13304716 Msa1314340:CDS
TGTGCCAGCAGCAAAGAACA+GGG 0.648778 8_4:+13306777 Msa1314340:CDS
TAGATGATGATCTACAGACT+AGG 0.660331 8_4:+13306839 Msa1314340:CDS
CGGAATCGATATCAACTCTG+AGG 0.660467 8_4:+13306322 Msa1314340:CDS
TGAAATCTACTCAAGCAATG+GGG 0.673116 8_4:+13306087 Msa1314340:CDS
GTTCTTTGCTGCTGGCACAG+CGG 0.716854 8_4:-13306773 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACAATAATTTAATAC+TGG + chr8_4:13304545-13304564 Msa1314340:intron 10.0%
!! AAAAACAATAATTTAATACT+GGG + chr8_4:13304546-13304565 Msa1314340:intron 10.0%
!!! AAAATTGATAATTACTTTTA+GGG + chr8_4:13305308-13305327 Msa1314340:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr8_4:13307096-13307115 Msa1314340:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr8_4:13307097-13307116 Msa1314340:intron 10.0%
!!! AATTTTCACTTTTAATCAAA+TGG + chr8_4:13304472-13304491 Msa1314340:intron 15.0%
!!! ATTTTCACTTTTAATCAAAT+GGG + chr8_4:13304473-13304492 Msa1314340:intron 15.0%
!!! CAAAATTGATAATTACTTTT+AGG + chr8_4:13305307-13305326 Msa1314340:intron 15.0%
!! AAAATTGTGTCAATTAAATT+GGG - chr8_4:13307061-13307080 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr8_4:13307098-13307117 Msa1314340:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr8_4:13307161-13307180 Msa1314340:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr8_4:13307162-13307181 Msa1314340:intron 15.0%
!!! TTAGTTGTATATTTTGTTGT+AGG + chr8_4:13304863-13304882 Msa1314340:intron 20.0%
!! AAAGGAATATAATACAACAA+AGG - chr8_4:13305137-13305156 None:intergenic 20.0%
!!! TTGTTGTATTATATTCCTTT+TGG + chr8_4:13305137-13305156 Msa1314340:intron 20.0%
!! AACATTCAAATTAAACCAAA+AGG - chr8_4:13305155-13305174 None:intergenic 20.0%
!! GTTATTAAAGCAAATTTGTA+AGG + chr8_4:13305240-13305259 Msa1314340:intron 20.0%
!! GTATACAAGTATAGATTATT+TGG + chr8_4:13305341-13305360 Msa1314340:intron 20.0%
!!! ATTGTGGTTTTTAATATAGT+AGG + chr8_4:13305411-13305430 Msa1314340:intron 20.0%
!!! TTGTGGTTTTTAATATAGTA+GGG + chr8_4:13305412-13305431 Msa1314340:intron 20.0%
!!! ATTAAGTTGTTTATCCAAAA+AGG - chr8_4:13306403-13306422 None:intergenic 20.0%
!! AATAAGCTAAATACATCTTA+AGG + chr8_4:13306538-13306557 Msa1314340:intron 20.0%
!!! TTTAGTCACATTTTATTTTC+AGG + chr8_4:13306958-13306977 Msa1314340:three_prime_UTR 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG - chr8_4:13307062-13307081 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr8_4:13307121-13307140 Msa1314340:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr8_4:13307194-13307213 Msa1314340:intron 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + chr8_4:13307195-13307214 Msa1314340:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+AGG + chr8_4:13307231-13307250 Msa1314340:intron 20.0%
!! TTCAATATGAGTTTTCTGTT+CGG + chr8_4:13304418-13304437 Msa1314340:exon 25.0%
! AAAATTTGAAGAATTACCTG+CGG - chr8_4:13304458-13304477 None:intergenic 25.0%
!!! TCTTATTTGCTTTTCTAGTT+TGG + chr8_4:13304574-13304593 Msa1314340:intron 25.0%
! GAAAAATTGTGACTTTGATT+AGG + chr8_4:13304596-13304615 Msa1314340:intron 25.0%
!!! AACTGAGTTTTTTGGTTAAT+GGG + chr8_4:13304619-13304638 Msa1314340:intron 25.0%
! AGTCTATTAGAGAAATTGAA+AGG + chr8_4:13304705-13304724 Msa1314340:CDS 25.0%
! GTCTATTAGAGAAATTGAAA+GGG + chr8_4:13304706-13304725 Msa1314340:CDS 25.0%
! AACTAAGTGCAATAGAAAAA+TGG - chr8_4:13304849-13304868 None:intergenic 25.0%
! CAAAAAACACAATAATTGCA+GGG - chr8_4:13304906-13304925 None:intergenic 25.0%
!! CAATAGTTTTTGAATTTGCA+GGG - chr8_4:13304966-13304985 None:intergenic 25.0%
!! ACAATAGTTTTTGAATTTGC+AGG - chr8_4:13304967-13304986 None:intergenic 25.0%
! TCAGTTTCAATATTCACTAA+CGG + chr8_4:13305216-13305235 Msa1314340:intron 25.0%
!!! TGAGAAGTTAATTGCTTTTA+AGG + chr8_4:13305388-13305407 Msa1314340:intron 25.0%
!!! TTAATTGCTTTTAAGGATTG+TGG + chr8_4:13305395-13305414 Msa1314340:intron 25.0%
!!! AGTTTGGTTTCAATTTGTTA+GGG + chr8_4:13305489-13305508 Msa1314340:intron 25.0%
!! TGTAAAACTTTTCAATCTGA+AGG - chr8_4:13305554-13305573 None:intergenic 25.0%
!!! AATAATAGACTAGTCCTTTT+TGG + chr8_4:13306386-13306405 Msa1314340:intron 25.0%
! ACTTATTTGTGTTTATCTAC+TGG - chr8_4:13306620-13306639 None:intergenic 25.0%
! AGAAGCTGTAACAATAATAA+TGG + chr8_4:13306687-13306706 Msa1314340:intron 25.0%
!! ATATACGATCATTGTTTTCA+TGG - chr8_4:13306923-13306942 None:intergenic 25.0%
!!! TCACATTTTATTTTCAGGTT+TGG + chr8_4:13306963-13306982 Msa1314340:three_prime_UTR 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr8_4:13307120-13307139 Msa1314340:intron 25.0%
AAATTTGAAGAATTACCTGC+GGG - chr8_4:13304457-13304476 None:intergenic 30.0%
!!! TGATTAGGAACTGAGTTTTT+TGG + chr8_4:13304611-13304630 Msa1314340:intron 30.0%
!!! GAACTGAGTTTTTTGGTTAA+TGG + chr8_4:13304618-13304637 Msa1314340:intron 30.0%
!! TTTTGGTTAATGGGTAGTTT+TGG + chr8_4:13304628-13304647 Msa1314340:intron 30.0%
! TTTTGTTAACAGAGCTTTTG+AGG + chr8_4:13304660-13304679 Msa1314340:intron 30.0%
! TTTGTTAACAGAGCTTTTGA+GGG + chr8_4:13304661-13304680 Msa1314340:intron 30.0%
!! AGCTTTTGAGGGAAAATAAA+AGG + chr8_4:13304672-13304691 Msa1314340:CDS 30.0%
ATTAAGAAGAATGCCAAACA+AGG + chr8_4:13304773-13304792 Msa1314340:CDS 30.0%
AAATACCATTTGTCCTTGTT+TGG - chr8_4:13304789-13304808 None:intergenic 30.0%
CCAAAAAACACAATAATTGC+AGG - chr8_4:13304907-13304926 None:intergenic 30.0%
!!! CCTGCAATTATTGTGTTTTT+TGG + chr8_4:13304904-13304923 Msa1314340:intron 30.0%
CTCAAACAAAAGAACTTACA+CGG - chr8_4:13304937-13304956 None:intergenic 30.0%
AGTCTCTAACATCACTTAAT+CGG - chr8_4:13305038-13305057 None:intergenic 30.0%
!!! AGCTGCTTTTTTAATTTGCA+CGG + chr8_4:13305064-13305083 Msa1314340:intron 30.0%
! GAGTTTGGTTTCAATTTGTT+AGG + chr8_4:13305488-13305507 Msa1314340:intron 30.0%
AAGCTTAAATCACAACTTCA+GGG + chr8_4:13305573-13305592 Msa1314340:CDS 30.0%
AACTTATCTGCTAAAATCCT+AGG - chr8_4:13305693-13305712 None:intergenic 30.0%
CTCATTATGTATCTTCAATG+AGG - chr8_4:13305919-13305938 None:intergenic 30.0%
TGCATTATCTTCTGTAAAGA+AGG - chr8_4:13306170-13306189 None:intergenic 30.0%
AGATAATGCAAGAGTTTGAA+AGG + chr8_4:13306180-13306199 Msa1314340:CDS 30.0%
AATCAAGTTCTTGATGAGAT+CGG + chr8_4:13306302-13306321 Msa1314340:CDS 30.0%
ACATCTTAAGGATATGTCAT+AGG + chr8_4:13306550-13306569 Msa1314340:intron 30.0%
ACAAATAAGTCAGTTCAAAC+AGG + chr8_4:13306630-13306649 Msa1314340:intron 30.0%
TTGTGTCAATTAAATTGGGA+CGG - chr8_4:13307057-13307076 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr8_4:13307105-13307124 Msa1314340:intron 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + chr8_4:13307208-13307227 Msa1314340:intron 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + chr8_4:13307209-13307228 Msa1314340:intron 30.0%
AGAAAATAGGTCAGTTATTC+CGG + chr8_4:13307244-13307263 Msa1314340:intron 30.0%
AGCGCTATTGCAAACAAAAT+TGG + chr8_4:13304365-13304384 Msa1314340:five_prime_UTR 35.0%
GAAATTGAAAGGGAAAGACA+AGG + chr8_4:13304716-13304735 Msa1314340:CDS 35.0%
CCACTAGTAATGAAAGAAGA+AGG - chr8_4:13304821-13304840 None:intergenic 35.0%
CCTTCTTCTTTCATTACTAG+TGG + chr8_4:13304818-13304837 Msa1314340:intron 35.0%
GTCTCTAACATCACTTAATC+GGG - chr8_4:13305037-13305056 None:intergenic 35.0%
! TGTAAGGAACTGTGTTGTTA+AGG + chr8_4:13305256-13305275 Msa1314340:intron 35.0%
! GTAAGGAACTGTGTTGTTAA+GGG + chr8_4:13305257-13305276 Msa1314340:intron 35.0%
!! TAGGGTGTTGTTATTTGAAC+AGG + chr8_4:13305430-13305449 Msa1314340:intron 35.0%
GAACAGGTATGTCATATGTT+TGG + chr8_4:13305446-13305465 Msa1314340:intron 35.0%
GTTTGAGTAGTTTCTGAGTT+TGG + chr8_4:13305473-13305492 Msa1314340:intron 35.0%
CAAGCTTAAATCACAACTTC+AGG + chr8_4:13305572-13305591 Msa1314340:CDS 35.0%
!! GGATTTTAGCAGATAAGTTG+AGG + chr8_4:13305694-13305713 Msa1314340:intron 35.0%
! TGAGCATGAAAGTATACACA+AGG - chr8_4:13305942-13305961 None:intergenic 35.0%
TTTCATGCTCATTCGTACTA+TGG + chr8_4:13305951-13305970 Msa1314340:intron 35.0%
TGTCTACAATTAATCTCAGG+AGG - chr8_4:13306066-13306085 None:intergenic 35.0%
CAGTGTCTACAATTAATCTC+AGG - chr8_4:13306069-13306088 None:intergenic 35.0%
ACTGAAATCTACTCAAGCAA+TGG + chr8_4:13306085-13306104 Msa1314340:CDS 35.0%
CTGAAATCTACTCAAGCAAT+GGG + chr8_4:13306086-13306105 Msa1314340:CDS 35.0%
TGAAATCTACTCAAGCAATG+GGG + chr8_4:13306087-13306106 Msa1314340:CDS 35.0%
AAAGGAGTTGCTAAAGCAAT+GGG + chr8_4:13306119-13306138 Msa1314340:CDS 35.0%
AAGCAATGGGTCAAATGAAT+AGG + chr8_4:13306132-13306151 Msa1314340:CDS 35.0%
!! GAACTTGTTTCTGAGGTAAT+GGG + chr8_4:13306218-13306237 Msa1314340:CDS 35.0%
!! GCAATTGATGATGCTTTAGA+AGG + chr8_4:13306245-13306264 Msa1314340:CDS 35.0%
TTTAGAAGGTGATGAAGAAG+AGG + chr8_4:13306259-13306278 Msa1314340:CDS 35.0%
!! CTTATTTTCATAAGCTCGCT+AGG - chr8_4:13306524-13306543 None:intergenic 35.0%
TACAGCTTCTTTCTAAGCTA+GGG - chr8_4:13306677-13306696 None:intergenic 35.0%
TTACAGCTTCTTTCTAAGCT+AGG - chr8_4:13306678-13306697 None:intergenic 35.0%
TAGATGATGATCTACAGACT+AGG + chr8_4:13306839-13306858 Msa1314340:CDS 35.0%
AGACTAGGTTAGATAACCTA+AGG + chr8_4:13306854-13306873 Msa1314340:CDS 35.0%
ATGTGATGCGTAGGAATATT+TGG + chr8_4:13306880-13306899 Msa1314340:exon 35.0%
GAAAATAGGTCAGTTATTCC+GGG + chr8_4:13307245-13307264 Msa1314340:intron 35.0%
GAATGCCAAACAAGGACAAA+TGG + chr8_4:13304781-13304800 Msa1314340:CDS 40.0%
TTAGTCTCTGACGTCATATG+CGG + chr8_4:13304989-13305008 Msa1314340:intron 40.0%
GCCACATGGCGTATTATATT+GGG - chr8_4:13305015-13305034 None:intergenic 40.0%
GGTATGTCATATGTTTGGTC+TGG + chr8_4:13305451-13305470 Msa1314340:intron 40.0%
!! AATTTGTTAGGGTGCTGTGA+GGG + chr8_4:13305500-13305519 Msa1314340:intron 40.0%
TTCATGCTTATTGTGCTCCT+AGG + chr8_4:13305673-13305692 Msa1314340:intron 40.0%
! GCAGATAAGTTGAGGTTATG+TGG + chr8_4:13305702-13305721 Msa1314340:intron 40.0%
GAAATCTACTCAAGCAATGG+GGG + chr8_4:13306088-13306107 Msa1314340:CDS 40.0%
GAAAGGAGTTGCTAAAGCAA+TGG + chr8_4:13306118-13306137 Msa1314340:CDS 40.0%
TGAAAGGCAGAATGAGAAGA+TGG + chr8_4:13306196-13306215 Msa1314340:CDS 40.0%
!! GAAGATGGAACTTGTTTCTG+AGG + chr8_4:13306211-13306230 Msa1314340:CDS 40.0%
!! GGAACTTGTTTCTGAGGTAA+TGG + chr8_4:13306217-13306236 Msa1314340:CDS 40.0%
ACAGCTTCTTTCTAAGCTAG+GGG - chr8_4:13306676-13306695 None:intergenic 40.0%
! CTACGCATCACATTTTCCTT+AGG - chr8_4:13306873-13306892 None:intergenic 40.0%
CTAAGGAAAATGTGATGCGT+AGG + chr8_4:13306871-13306890 Msa1314340:exon 40.0%
GACGGAGGTAGTATATATCA+TGG - chr8_4:13307039-13307058 None:intergenic 40.0%
TGTCAATTAAATTGGGACGG+AGG - chr8_4:13307054-13307073 None:intergenic 40.0%
GGAATTGCACAGTAGAGCAT+AGG + chr8_4:13304386-13304405 Msa1314340:five_prime_UTR 45.0%
GCCCAATATAATACGCCATG+TGG + chr8_4:13305011-13305030 Msa1314340:intron 45.0%
GGCCACATGGCGTATTATAT+TGG - chr8_4:13305016-13305035 None:intergenic 45.0%
!! CAATTTGTTAGGGTGCTGTG+AGG + chr8_4:13305499-13305518 Msa1314340:intron 45.0%
! GCGAGTTCTGATAAGATCCT+TGG - chr8_4:13305532-13305551 None:intergenic 45.0%
!! GGGTGTTGCTTTGAGAATTC+AGG + chr8_4:13305593-13305612 Msa1314340:CDS 45.0%
CACATGTCGGATACTTGTCA+CGG - chr8_4:13305787-13305806 None:intergenic 45.0%
TGACAAGTATCCGACATGTG+TGG + chr8_4:13305787-13305806 Msa1314340:intron 45.0%
GACAAGTATCCGACATGTGT+GGG + chr8_4:13305788-13305807 Msa1314340:intron 45.0%
TCCGGTATCTATGTCTCTGT+CGG + chr8_4:13305891-13305910 Msa1314340:intron 45.0%
ACCGACAGAGACATAGATAC+CGG - chr8_4:13305895-13305914 None:intergenic 45.0%
CGGAATCGATATCAACTCTG+AGG + chr8_4:13306322-13306341 Msa1314340:CDS 45.0%
! ATCATCATTGCCCGTTGGTT+CGG - chr8_4:13306812-13306831 None:intergenic 45.0%
ATAGGTCAGTTATTCCGGGA+CGG + chr8_4:13307249-13307268 Msa1314340:intron 45.0%
!! TTAAAAATTATAAATTTAAC+AGG - chr8_4:13306003-13306022 None:intergenic 5.0%
CATCACTTAATCGGGCCACA+TGG - chr8_4:13305029-13305048 None:intergenic 50.0%
!! TTAGGGTGCTGTGAGGGTTA+TGG + chr8_4:13305506-13305525 Msa1314340:intron 50.0%
TATCCGACATGTGTGGGCAT+TGG + chr8_4:13305794-13305813 Msa1314340:intron 50.0%
ATCCGACATGTGTGGGCATT+GGG + chr8_4:13305795-13305814 Msa1314340:intron 50.0%
TGTGCCAGCAGCAAAGAACA+GGG + chr8_4:13306777-13306796 Msa1314340:CDS 50.0%
AGCAAAGAACAGGGTTGCTC+AGG + chr8_4:13306786-13306805 Msa1314340:CDS 50.0%
GAACCAACGGGCAATGATGA+TGG + chr8_4:13306811-13306830 Msa1314340:CDS 50.0%
AATTGATACTCCCTCCGTCC+CGG - chr8_4:13307266-13307285 None:intergenic 50.0%
GGCAGTAGAAAAACTCCCGC+AGG + chr8_4:13304439-13304458 Msa1314340:CDS 55.0%
TGCTGTGAGGGTTATGGCCA+AGG + chr8_4:13305512-13305531 Msa1314340:CDS 55.0%
TGCCCAATGCCCACACATGT+CGG - chr8_4:13305800-13305819 None:intergenic 55.0%
! CGACGTGTAAGTGTCGTGTC+CGG + chr8_4:13305873-13305892 Msa1314340:intron 55.0%
GCAATGGGGGACGCTATGAA+AGG + chr8_4:13306101-13306120 Msa1314340:CDS 55.0%
!! ACAGCGGTTGAGGTTGATGC+AGG - chr8_4:13306760-13306779 None:intergenic 55.0%
GTTCTTTGCTGCTGGCACAG+CGG - chr8_4:13306776-13306795 None:intergenic 55.0%
CTGTGCCAGCAGCAAAGAAC+AGG + chr8_4:13306776-13306795 Msa1314340:CDS 55.0%
GCAACCCTGTTCTTTGCTGC+TGG - chr8_4:13306784-13306803 None:intergenic 55.0%
CCACCATCATCATTGCCCGT+TGG - chr8_4:13306817-13306836 None:intergenic 55.0%
!! CCAACGGGCAATGATGATGG+TGG + chr8_4:13306814-13306833 Msa1314340:CDS 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr8_4:13307253-13307272 Msa1314340:intron 55.0%
GGTTGCTCAGGCCGAACCAA+CGG + chr8_4:13306798-13306817 Msa1314340:CDS 60.0%
GTTGCTCAGGCCGAACCAAC+GGG + chr8_4:13306799-13306818 Msa1314340:CDS 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr8_4:13307252-13307271 Msa1314340:intron 60.0%
TGCTGCTGGCACAGCGGTTG+AGG - chr8_4:13306770-13306789 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 13304343 13307322 13304343 ID=Msa1314340;Name=Msa1314340
chr8_4 mRNA 13304343 13307322 13304343 ID=Msa1314340-mRNA-1;Parent=Msa1314340;Name=Msa1314340-mRNA-1;_AED=0.10;_eAED=0.10;_QI=81|1|1|1|0.8|0.66|6|203|224
chr8_4 exon 13304343 13304460 13304343 ID=Msa1314340-mRNA-1:exon:4973;Parent=Msa1314340-mRNA-1
chr8_4 exon 13304672 13304802 13304672 ID=Msa1314340-mRNA-1:exon:4974;Parent=Msa1314340-mRNA-1
chr8_4 exon 13305510 13305614 13305510 ID=Msa1314340-mRNA-1:exon:4975;Parent=Msa1314340-mRNA-1
chr8_4 exon 13306083 13306343 13306083 ID=Msa1314340-mRNA-1:exon:4976;Parent=Msa1314340-mRNA-1
chr8_4 exon 13306745 13307039 13306745 ID=Msa1314340-mRNA-1:exon:4977;Parent=Msa1314340-mRNA-1
chr8_4 exon 13307274 13307322 13307274 ID=Msa1314340-mRNA-1:exon:4978;Parent=Msa1314340-mRNA-1
chr8_4 five_prime_UTR 13304343 13304423 13304343 ID=Msa1314340-mRNA-1:five_prime_utr;Parent=Msa1314340-mRNA-1
chr8_4 CDS 13304424 13304460 13304424 ID=Msa1314340-mRNA-1:cds;Parent=Msa1314340-mRNA-1
chr8_4 CDS 13304672 13304802 13304672 ID=Msa1314340-mRNA-1:cds;Parent=Msa1314340-mRNA-1
chr8_4 CDS 13305510 13305614 13305510 ID=Msa1314340-mRNA-1:cds;Parent=Msa1314340-mRNA-1
chr8_4 CDS 13306083 13306343 13306083 ID=Msa1314340-mRNA-1:cds;Parent=Msa1314340-mRNA-1
chr8_4 CDS 13306745 13306885 13306745 ID=Msa1314340-mRNA-1:cds;Parent=Msa1314340-mRNA-1
chr8_4 three_prime_UTR 13306886 13307039 13306886 ID=Msa1314340-mRNA-1:three_prime_utr;Parent=Msa1314340-mRNA-1
chr8_4 three_prime_UTR 13307274 13307322 13307274 ID=Msa1314340-mRNA-1:three_prime_utr;Parent=Msa1314340-mRNA-1
Gene Sequence

>Msa1314340

ATGAGTTTTCTGTTCGGCAGTAGAAAAACTCCCGCAGAGCTTTTGAGGGAAAATAAAAGGATGTTAGATAAGTCTATTAGAGAAATTGAAAGGGAAAGACAAGGATTGCAGTCTCAAGAAAAGAAATTGATTGTAGAGATTAAGAAGAATGCCAAACAAGGACAAATGGGTGCTGTGAGGGTTATGGCCAAGGATCTTATCAGAACTCGCCTTCAGATTGAAAAGTTTTACAAGCTTAAATCACAACTTCAGGGTGTTGCTTTGAGAATTCAGACACTGAAATCTACTCAAGCAATGGGGGACGCTATGAAAGGAGTTGCTAAAGCAATGGGTCAAATGAATAGGCAGATGAATTTGCCTTCTTTACAGAAGATAATGCAAGAGTTTGAAAGGCAGAATGAGAAGATGGAACTTGTTTCTGAGGTAATGGGAGATGCAATTGATGATGCTTTAGAAGGTGATGAAGAAGAGGAAGAGACAGAAGATCTTGTGAATCAAGTTCTTGATGAGATCGGAATCGATATCAACTCTGAGCTTTTGAATGCACCTGCATCAACCTCAACCGCTGTGCCAGCAGCAAAGAACAGGGTTGCTCAGGCCGAACCAACGGGCAATGATGATGGTGGAATAGATGATGATCTACAGACTAGGTTAGATAACCTAAGGAAAATGTGA

Protein sequence

>Msa1314340

MSFLFGSRKTPAELLRENKRMLDKSIREIERERQGLQSQEKKLIVEIKKNAKQGQMGAVRVMAKDLIRTRLQIEKFYKLKSQLQGVALRIQTLKSTQAMGDAMKGVAKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMGDAIDDALEGDEEEEETEDLVNQVLDEIGIDINSELLNAPASTSTAVPAAKNRVAQAEPTGNDDGGIDDDLQTRLDNLRKM*