Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121430 | sp|F4KFB3|PTST3_ARATH | 35.914 | 607 | 308 | 17 | 41 | 619 | 35 | 588 | 1.74e-89 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121430 | A0A072VJE8 | 91.987 | 624 | 34 | 6 | 1 | 619 | 1 | 613 | 0.0 | 1133 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046820 | Msa0121430 | 0.803048 | 4.198878e-49 | -8.615850e-47 |
| Msa0073230 | Msa0121430 | 0.897346 | 1.537739e-76 | -8.615850e-47 |
| Msa0121430 | Msa0166050 | 0.864398 | 1.251704e-64 | -8.615850e-47 |
| Msa0121430 | Msa0345010 | 0.806301 | 8.792199e-50 | -8.615850e-47 |
| Msa0121430 | Msa0382200 | 0.808997 | 2.352629e-50 | -8.615850e-47 |
| Msa0121430 | Msa0416800 | 0.801354 | 9.367844e-49 | -8.615850e-47 |
| Msa0121430 | Msa0463460 | 0.808073 | 3.704864e-50 | -8.615850e-47 |
| Msa0121430 | Msa0509020 | 0.800919 | 1.149540e-48 | -8.615850e-47 |
| Msa0121430 | Msa0757180 | 0.809272 | 2.053587e-50 | -8.615850e-47 |
| Msa0121430 | Msa0769390 | 0.824786 | 6.682319e-54 | -8.615850e-47 |
| Msa0121430 | Msa0789690 | 0.830373 | 3.046849e-55 | -8.615850e-47 |
| Msa0121430 | Msa0968320 | -0.803895 | 2.802661e-49 | -8.615850e-47 |
| Msa0121430 | Msa1170040 | -0.801107 | 1.052187e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121430 | MtrunA17_Chr1g0180511 | 91.987 | 624 | 34 | 6 | 1 | 619 | 1 | 613 | 0.0 | 1133 |
| Msa0121430 | MtrunA17_Chr5g0415861 | 34.615 | 130 | 73 | 2 | 482 | 611 | 389 | 506 | 9.23e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121430 | AT5G03420.1 | 35.914 | 607 | 308 | 17 | 41 | 619 | 35 | 588 | 1.77e-90 | 292 |
| Msa0121430 | AT1G27070.1 | 31.507 | 146 | 86 | 2 | 482 | 627 | 399 | 530 | 3.44e-13 | 72.8 |
Find 189 sgRNAs with CRISPR-Local
Find 578 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTGAGGATCCATCTTTAT+TGG | 0.210353 | 1_3:+47248039 | None:intergenic |
| GAGGCTGAAGAAAGTCTTTC+AGG | 0.211074 | 1_3:-47248653 | Msa0121430:CDS |
| CCACCATCGCTGTATCTATT+TGG | 0.233113 | 1_3:-47246549 | Msa0121430:three_prime_UTR |
| GGTTGTGGTGGCGGTGGTTT+TGG | 0.255607 | 1_3:+47254698 | None:intergenic |
| TACCCAGGAAATCAAGATTT+TGG | 0.263422 | 1_3:-47247640 | Msa0121430:intron |
| TCCTTGTCAAAATGAGTAAT+TGG | 0.264078 | 1_3:+47251579 | None:intergenic |
| TATAGTAGTAGTGGTGTAAA+TGG | 0.271902 | 1_3:-47254868 | Msa0121430:exon |
| AGAATGCGATGACGCTTTAA+TGG | 0.274132 | 1_3:-47252893 | Msa0121430:CDS |
| CACTTCATTCAACTTGTCTA+TGG | 0.293386 | 1_3:-47252581 | Msa0121430:CDS |
| GGAGAAAACGATTGCTTCAT+TGG | 0.311763 | 1_3:-47246528 | Msa0121430:three_prime_UTR |
| AACAATGCCATGGCACATAA+TGG | 0.319841 | 1_3:-47251793 | Msa0121430:CDS |
| GGTATCAACTGAATTTCTTC+AGG | 0.320026 | 1_3:-47253214 | Msa0121430:CDS |
| TAGATAAAATTTGTTGTTGA+TGG | 0.320425 | 1_3:-47247421 | Msa0121430:CDS |
| CAGAGATGTGTGAAGCAGTT+TGG | 0.333304 | 1_3:+47254816 | None:intergenic |
| CCTATCATTCATCCTTGTCC+TGG | 0.345357 | 1_3:-47254937 | None:intergenic |
| TCCATGCCAACAGAAATTTC+TGG | 0.345810 | 1_3:-47252952 | Msa0121430:CDS |
| GAAAGTTGGACCAGCCTCTT+TGG | 0.349591 | 1_3:-47251735 | Msa0121430:intron |
| ATTGAGGATCCATCTTTATT+GGG | 0.352743 | 1_3:+47248040 | None:intergenic |
| ACCACTGTGGATAATGATTT+AGG | 0.354121 | 1_3:-47253018 | Msa0121430:CDS |
| GAAAGGATTAGTTTATGATT+AGG | 0.356681 | 1_3:-47246660 | Msa0121430:three_prime_UTR |
| TACATAGGAATTGAAGATAA+TGG | 0.357393 | 1_3:-47246884 | Msa0121430:CDS |
| AACATTGATTCTTTAGAAAC+GGG | 0.360442 | 1_3:-47253420 | Msa0121430:CDS |
| AGTGAGAGGGAGAGAAATAG+TGG | 0.365796 | 1_3:+47254740 | None:intergenic |
| ATATTAGACTTACCTTCAAC+TGG | 0.371243 | 1_3:+47252517 | None:intergenic |
| AGAGATGTGTGAAGCAGTTT+GGG | 0.371482 | 1_3:+47254817 | None:intergenic |
| AGAGAAAGAGTTCAGTCGTT+TGG | 0.375021 | 1_3:-47252776 | Msa0121430:CDS |
| GCTGATTTCTTCCTCTGCCT+TGG | 0.376594 | 1_3:+47248718 | None:intergenic |
| TTAGGAGAAAATAAACAATT+AGG | 0.377868 | 1_3:-47246642 | Msa0121430:three_prime_UTR |
| TCCAATCAAGTTGTTCCATC+TGG | 0.387208 | 1_3:-47251757 | Msa0121430:CDS |
| GAGACAGTTCCAACTCCTTC+TGG | 0.394600 | 1_3:+47250082 | None:intergenic |
| CGAGCTACTGACTCCCTTTG+TGG | 0.394919 | 1_3:+47247382 | None:intergenic |
| GAATGCGATGACGCTTTAAT+GGG | 0.407613 | 1_3:-47252892 | Msa0121430:CDS |
| CAACATTGATTCTTTAGAAA+CGG | 0.409475 | 1_3:-47253421 | Msa0121430:CDS |
| ATTTAAATGTGCATACTAGA+TGG | 0.410241 | 1_3:+47246759 | None:intergenic |
| TCCAGATGGAACAACTTGAT+TGG | 0.410526 | 1_3:+47251756 | None:intergenic |
| TTCTCTCTATTGTCAACATC+AGG | 0.412640 | 1_3:+47252793 | None:intergenic |
| AAACTCAGAGCCAGAGGTTG+TGG | 0.414256 | 1_3:+47252663 | None:intergenic |
| TTTCTGTTGGCATGGAACTT+TGG | 0.418429 | 1_3:+47252959 | None:intergenic |
| TACTTTCAGCTCAGCTGAAA+AGG | 0.420378 | 1_3:+47254911 | None:intergenic |
| CGTCAATTTCTCGACGAAGT+TGG | 0.426510 | 1_3:-47254512 | Msa0121430:CDS |
| ACAATGCCATGGCACATAAT+GGG | 0.428974 | 1_3:-47251792 | Msa0121430:CDS |
| GAGGTGGCTGGTAGCTTCAA+TGG | 0.431007 | 1_3:-47248072 | Msa0121430:CDS |
| TGATTTGTCCATAGAGCAAA+AGG | 0.443744 | 1_3:-47252743 | Msa0121430:CDS |
| GCCATGGCATTGTTATCTTC+AGG | 0.448831 | 1_3:+47251802 | None:intergenic |
| TTACCGTGTGGTTGTGGTGG+CGG | 0.451745 | 1_3:+47254689 | None:intergenic |
| GATATTGAGGTTCTATCAAC+AGG | 0.455374 | 1_3:-47253363 | Msa0121430:intron |
| AAAATATCCGAGGATTCTAC+AGG | 0.459760 | 1_3:+47253129 | None:intergenic |
| AGAACAGATTGAGAAGGAAA+AGG | 0.463574 | 1_3:-47250052 | Msa0121430:intron |
| TCCGTGGAAGGAACTGTCAA+TGG | 0.466430 | 1_3:+47252844 | None:intergenic |
| AGTTGTTCCATCTGGAAAGT+TGG | 0.466950 | 1_3:-47251749 | Msa0121430:CDS |
| TATGCACTTGTTGTTGGTGT+TGG | 0.468497 | 1_3:+47254785 | None:intergenic |
| TTTAGAACCTTGATCCATCA+TGG | 0.470651 | 1_3:+47247998 | None:intergenic |
| GAACTTTGGCTATCAAAGTT+CGG | 0.471263 | 1_3:+47252973 | None:intergenic |
| AGAGAATATGCACTTGTTGT+TGG | 0.473316 | 1_3:+47254779 | None:intergenic |
| GTCCATAGAGCAAAAGGACT+GGG | 0.475132 | 1_3:-47252737 | Msa0121430:CDS |
| TCCGTCTGACAATGTTTGCC+AGG | 0.475420 | 1_3:+47253490 | None:intergenic |
| GCGGTGCTGTGGCTTTATCC+TGG | 0.477203 | 1_3:-47247614 | Msa0121430:CDS |
| CTATCATTCATCCTTGTCCT+GGG | 0.478875 | 1_3:-47254936 | None:intergenic |
| ACCAGAAATTTCTGTTGGCA+TGG | 0.480364 | 1_3:+47252951 | None:intergenic |
| CAGGTTCTTGTTGAATTCTG+TGG | 0.486855 | 1_3:-47248111 | Msa0121430:CDS |
| CCGTGTGGTTGTGGTGGCGG+TGG | 0.487170 | 1_3:+47254692 | None:intergenic |
| GATGATGTTCCCACAACCTC+TGG | 0.487197 | 1_3:-47252673 | Msa0121430:CDS |
| GTATCAACTGAATTTCTTCA+GGG | 0.491308 | 1_3:-47253213 | Msa0121430:CDS |
| ATAGTAGTAGTGGTGTAAAT+GGG | 0.494585 | 1_3:-47254867 | Msa0121430:exon |
| GCTTTATCCTGGTGTATATG+AGG | 0.496818 | 1_3:-47247603 | Msa0121430:intron |
| TGGCTGGTAGCTTCAATGGC+TGG | 0.501850 | 1_3:-47248068 | Msa0121430:CDS |
| GAATGAGAAGGTTGACGGCT+CGG | 0.502596 | 1_3:-47253250 | Msa0121430:CDS |
| AATTTGTTGTTGATGGCGAC+TGG | 0.503081 | 1_3:-47247414 | Msa0121430:CDS |
| TTCAGCTGAGCTGAAAGTAA+AGG | 0.503279 | 1_3:-47254907 | Msa0121430:five_prime_UTR |
| AACTCAGAGCCAGAGGTTGT+GGG | 0.505238 | 1_3:+47252664 | None:intergenic |
| GGTGATGTTGTTGAGGTGGC+TGG | 0.506525 | 1_3:-47248084 | Msa0121430:CDS |
| TTATTCGTGGAGGATGGCCT+AGG | 0.508296 | 1_3:-47253108 | Msa0121430:CDS |
| TTCCGCCCCTGTAGAATCCT+CGG | 0.509559 | 1_3:-47253136 | Msa0121430:CDS |
| CAACTTGTCTATGGAGGAAA+GGG | 0.509652 | 1_3:-47252572 | Msa0121430:CDS |
| TCCACAGTGGTCACTTCAGT+TGG | 0.511638 | 1_3:+47253030 | None:intergenic |
| TAAGATGCAATGTAGTATGA+TGG | 0.511848 | 1_3:-47246417 | Msa0121430:three_prime_UTR |
| AAATGGGTACCTCCACTCTC+TGG | 0.514504 | 1_3:-47254851 | Msa0121430:CDS |
| CATTGTTATCTTCAGGTGGA+TGG | 0.517779 | 1_3:+47251809 | None:intergenic |
| GATTCACCAGAAATTTCTGT+TGG | 0.518420 | 1_3:+47252946 | None:intergenic |
| TTGACAGCAACATGGAAAAG+AGG | 0.519204 | 1_3:-47246833 | Msa0121430:three_prime_UTR |
| AAGGTTGACGGCTCGGATGA+TGG | 0.519792 | 1_3:-47253243 | Msa0121430:CDS |
| CATTATACGAAGTGTTGGAA+TGG | 0.520758 | 1_3:+47252818 | None:intergenic |
| CTGGCATCACCCAATAAAGA+TGG | 0.522059 | 1_3:-47248049 | Msa0121430:CDS |
| TGACAGCAACATGGAAAAGA+GGG | 0.522491 | 1_3:-47246832 | Msa0121430:three_prime_UTR |
| TGGCCACATTCCCTCTACTA+AGG | 0.523289 | 1_3:-47254480 | Msa0121430:CDS |
| TCCATTGACAGTTCCTTCCA+CGG | 0.525012 | 1_3:-47252845 | Msa0121430:CDS |
| TCATTTGAGACAACACGGTA+TGG | 0.525060 | 1_3:-47252922 | Msa0121430:CDS |
| ACATCTTCCACGTATGTGAA+AGG | 0.533520 | 1_3:-47246677 | Msa0121430:three_prime_UTR |
| TGAACTGTTGTAGGGTACAT+AGG | 0.534895 | 1_3:-47246899 | Msa0121430:intron |
| AGGATCATTATACGAAGTGT+TGG | 0.535407 | 1_3:+47252813 | None:intergenic |
| AGAAGTCAACAACGTGGCAG+AGG | 0.537900 | 1_3:-47253064 | Msa0121430:CDS |
| GACAAGTTGAATGAAGTGTC+GGG | 0.539012 | 1_3:+47252586 | None:intergenic |
| GACGAAGTTGGTCTTCCTCA+TGG | 0.541010 | 1_3:-47254500 | Msa0121430:CDS |
| AGAAAATAAACAATTAGGCG+TGG | 0.542565 | 1_3:-47246637 | Msa0121430:three_prime_UTR |
| AATAATTGAAAGACCTTCCG+TGG | 0.543122 | 1_3:+47254447 | None:intergenic |
| GGTCAGAATGAGAAGGTTGA+CGG | 0.549557 | 1_3:-47253255 | Msa0121430:CDS |
| CTTCTCACAAGTTCATTATG+TGG | 0.549567 | 1_3:-47253444 | Msa0121430:CDS |
| GGAGATCTAGATCCAGTTGA+AGG | 0.550006 | 1_3:-47252529 | Msa0121430:intron |
| GCAAAGTAGTATAGTAGTAG+TGG | 0.550251 | 1_3:-47254877 | Msa0121430:five_prime_UTR |
| CTTGTTGAATTCTGTGGCGA+CGG | 0.551688 | 1_3:-47248105 | Msa0121430:CDS |
| CAGTGGTCACTTCAGTTGGA+TGG | 0.552128 | 1_3:+47253034 | None:intergenic |
| TAGATACAGCGATGGTGGCG+TGG | 0.552834 | 1_3:+47246554 | None:intergenic |
| GAAGTCAACAACGTGGCAGA+GGG | 0.553220 | 1_3:-47253063 | Msa0121430:CDS |
| CTGGAGAACAGATCCACAAA+GGG | 0.554459 | 1_3:-47247395 | Msa0121430:CDS |
| TCAACTTGTCTATGGAGGAA+AGG | 0.554637 | 1_3:-47252573 | Msa0121430:CDS |
| ATAGTGGATTGGTGTTGCGT+TGG | 0.555387 | 1_3:+47254756 | None:intergenic |
| ATAACACTAGTTAATGATTG+AGG | 0.555605 | 1_3:+47248024 | None:intergenic |
| AAAAGGTGGAAATGAGTGAG+AGG | 0.557135 | 1_3:+47254726 | None:intergenic |
| GAAAATAAACAATTAGGCGT+GGG | 0.559016 | 1_3:-47246636 | Msa0121430:three_prime_UTR |
| GAGGGAGAGAAATAGTGGAT+TGG | 0.560233 | 1_3:+47254745 | None:intergenic |
| AGACAAGTTGAATGAAGTGT+CGG | 0.561921 | 1_3:+47252585 | None:intergenic |
| AGAAAGTCTTTCAGGACTCA+AGG | 0.562500 | 1_3:-47248645 | Msa0121430:CDS |
| TGACAAGGATTTGGATGCTG+AGG | 0.564953 | 1_3:-47251565 | Msa0121430:intron |
| TTATAGACCATGATGGATCA+AGG | 0.567399 | 1_3:-47248005 | Msa0121430:intron |
| GGCTGGTCCAACTTTCCAGA+TGG | 0.570271 | 1_3:+47251742 | None:intergenic |
| CTGAAAAGGAACCCAGGACA+AGG | 0.571580 | 1_3:+47254925 | None:intergenic |
| CACGAAATGAATTTGTATCA+CGG | 0.573343 | 1_3:+47246446 | None:intergenic |
| CCAAATAGATACAGCGATGG+TGG | 0.577476 | 1_3:+47246549 | None:intergenic |
| AGAAGGAGTTGGAACTGTCT+CGG | 0.579202 | 1_3:-47250080 | Msa0121430:CDS |
| GTGCTAGTACCAGAAGGAGT+TGG | 0.582635 | 1_3:-47250091 | Msa0121430:intron |
| TGAGTTCCCATTATGTGCCA+TGG | 0.584922 | 1_3:+47251786 | None:intergenic |
| CTTAAAAGCTCCTTAGTAGA+GGG | 0.586209 | 1_3:+47254470 | None:intergenic |
| AAGGTGTTACCGTGTGGTTG+TGG | 0.587121 | 1_3:+47254683 | None:intergenic |
| TGTCCATAGAGCAAAAGGAC+TGG | 0.587697 | 1_3:-47252738 | Msa0121430:CDS |
| GGATGCTGCAAATGATATTG+AGG | 0.590010 | 1_3:-47253376 | Msa0121430:CDS |
| AAAGGTGGAAATGAGTGAGA+GGG | 0.590308 | 1_3:+47254727 | None:intergenic |
| ACTAGTGTTATAGACCATGA+TGG | 0.591582 | 1_3:-47248012 | Msa0121430:CDS |
| TTCATTCAACTTGTCTATGG+AGG | 0.594794 | 1_3:-47252578 | Msa0121430:CDS |
| CAAACACTTACCAAAGAGGC+TGG | 0.595729 | 1_3:+47251725 | None:intergenic |
| TGTCTTGCAAACCAAGGCAG+AGG | 0.596959 | 1_3:-47248729 | Msa0121430:CDS |
| ATACCAAACACTTACCAAAG+AGG | 0.597173 | 1_3:+47251721 | None:intergenic |
| AACTAATCCTTTCACATACG+TGG | 0.597521 | 1_3:+47246670 | None:intergenic |
| AAATCATCTCAAGTTCATGC+TGG | 0.600300 | 1_3:-47251437 | Msa0121430:intron |
| ATGGCATTGTTATCTTCAGG+TGG | 0.604132 | 1_3:+47251805 | None:intergenic |
| GTCAGAGCGGATCTCATCAT+CGG | 0.605498 | 1_3:+47254538 | None:intergenic |
| ATTTAAAGGTCAGAATGAGA+AGG | 0.605549 | 1_3:-47253262 | Msa0121430:intron |
| GCTTAAAAGCTCCTTAGTAG+AGG | 0.607264 | 1_3:+47254469 | None:intergenic |
| GCTGAAAGAACAGATTGAGA+AGG | 0.608814 | 1_3:-47250058 | Msa0121430:CDS |
| GATTTAGGTAGTTCAAGCGA+AGG | 0.608993 | 1_3:-47253003 | Msa0121430:CDS |
| GTGTTACCGTGTGGTTGTGG+TGG | 0.610122 | 1_3:+47254686 | None:intergenic |
| CCTAGTGGCATATCAACAGC+AGG | 0.611521 | 1_3:+47251835 | None:intergenic |
| CGACGGTGATGTTGTTGAGG+TGG | 0.612943 | 1_3:-47248088 | Msa0121430:CDS |
| ATCAACTGAATTTCTTCAGG+GGG | 0.613079 | 1_3:-47253211 | Msa0121430:CDS |
| CACATAATGAACTTGTGAGA+AGG | 0.616043 | 1_3:+47253445 | None:intergenic |
| GAAATAACATAACCAGAGAG+TGG | 0.617452 | 1_3:+47254839 | None:intergenic |
| TCTATGGACAAATCAACTGA+TGG | 0.619476 | 1_3:+47252751 | None:intergenic |
| GCTCCTTAGTAGAGGGAATG+TGG | 0.619864 | 1_3:+47254477 | None:intergenic |
| ACCTGGCAAACATTGTCAGA+CGG | 0.622952 | 1_3:-47253491 | Msa0121430:CDS |
| GGATGATCACATGCTACATG+AGG | 0.625741 | 1_3:-47251604 | Msa0121430:CDS |
| CTCAGAAAACTCAGAGCCAG+AGG | 0.625929 | 1_3:+47252657 | None:intergenic |
| CCTGCTGTTGATATGCCACT+AGG | 0.626325 | 1_3:-47251835 | Msa0121430:CDS |
| ATCCGAGGATTCTACAGGGG+CGG | 0.627206 | 1_3:+47253134 | None:intergenic |
| CCACCGCCACCACAACCACA+CGG | 0.629623 | 1_3:-47254692 | Msa0121430:intron |
| TTAGGCGTGGGCTGATAGTG+AGG | 0.631300 | 1_3:-47246624 | Msa0121430:three_prime_UTR |
| TGGCGACGGTGATGTTGTTG+AGG | 0.633088 | 1_3:-47248091 | Msa0121430:CDS |
| GCAAACATTGTCAGACGGAG+AGG | 0.639169 | 1_3:-47253486 | Msa0121430:CDS |
| TCTCCAAATAGATACAGCGA+TGG | 0.642541 | 1_3:+47246546 | None:intergenic |
| AGTGATCTTTGAGTTCACCT+AGG | 0.642551 | 1_3:+47253091 | None:intergenic |
| AAATATCCGAGGATTCTACA+GGG | 0.643478 | 1_3:+47253130 | None:intergenic |
| TTTGTCTGTCTTGCAAACCA+AGG | 0.647837 | 1_3:-47248735 | Msa0121430:CDS |
| TTGTATTTATAGGAATGACC+TGG | 0.649997 | 1_3:-47253508 | Msa0121430:intron |
| AAAATGACTGAGAAGAGGAG+AGG | 0.651561 | 1_3:+47246501 | None:intergenic |
| ACCTGAAGATAACAATGCCA+TGG | 0.653047 | 1_3:-47251803 | Msa0121430:CDS |
| GCTCAGCTGAAAAGGAACCC+AGG | 0.653399 | 1_3:+47254919 | None:intergenic |
| ACGATAAAAGTTAAAACCTG+TGG | 0.655831 | 1_3:+47246577 | None:intergenic |
| TCAGGTGGATGGACACCTAG+TGG | 0.658156 | 1_3:+47251820 | None:intergenic |
| GCACGCACCTCATATACACC+AGG | 0.663325 | 1_3:+47247596 | None:intergenic |
| AAGAAATTCAGTTGATACCG+TGG | 0.664333 | 1_3:+47253218 | None:intergenic |
| GAAGTGCATTCATCTAAACT+CGG | 0.666994 | 1_3:+47253156 | None:intergenic |
| TATTGGGTGCTAGTACCAGA+AGG | 0.670191 | 1_3:-47250097 | Msa0121430:intron |
| ACTGGAGAACAGATCCACAA+AGG | 0.670248 | 1_3:-47247396 | Msa0121430:CDS |
| CTCCACGAATAAAATATCCG+AGG | 0.671089 | 1_3:+47253119 | None:intergenic |
| TCCATAGAGCAAAAGGACTG+GGG | 0.672682 | 1_3:-47252736 | Msa0121430:CDS |
| TATCAACTGAATTTCTTCAG+GGG | 0.673369 | 1_3:-47253212 | Msa0121430:CDS |
| GACAGCAACATGGAAAAGAG+GGG | 0.676424 | 1_3:-47246831 | Msa0121430:three_prime_UTR |
| GTAGAGGGAATGTGGCCATG+AGG | 0.677553 | 1_3:+47254485 | None:intergenic |
| CAAAGGGAGTCAGTAGCTCG+AGG | 0.685170 | 1_3:-47247379 | Msa0121430:intron |
| AACTGCTTCACACATCTCTG+TGG | 0.692375 | 1_3:-47254813 | Msa0121430:CDS |
| AAGTCTTTCAGGACTCAAGG+AGG | 0.706762 | 1_3:-47248642 | Msa0121430:intron |
| ATAACATAACCAGAGAGTGG+AGG | 0.711629 | 1_3:+47254842 | None:intergenic |
| AATCATCATTTGAGACAACA+CGG | 0.711660 | 1_3:-47252927 | Msa0121430:CDS |
| AAGTCAACAACGTGGCAGAG+GGG | 0.721712 | 1_3:-47253062 | Msa0121430:CDS |
| AAAAGATGCAGAGTTGCATG+AGG | 0.730970 | 1_3:-47248672 | Msa0121430:CDS |
| CGGCTCGGATGATGGTACCA+CGG | 0.731376 | 1_3:-47253235 | Msa0121430:CDS |
| AATATCCGAGGATTCTACAG+GGG | 0.732323 | 1_3:+47253131 | None:intergenic |
| ACCTAAATCATTATCCACAG+TGG | 0.733210 | 1_3:+47253017 | None:intergenic |
| GAAATTGACGAATGTCAGAG+CGG | 0.742026 | 1_3:+47254525 | None:intergenic |
| CTCTAAAGAAGTCAACAACG+TGG | 0.748360 | 1_3:-47253070 | Msa0121430:CDS |
| TCCAACTGAAGTGACCACTG+TGG | 0.757560 | 1_3:-47253031 | Msa0121430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTAATTCCTAATT+TGG | - | chr1_3:47246685-47246704 | Msa0121430:three_prime_UTR | 10.0% |
| !! | TTATAAAATTTACAGAAATT+CGG | + | chr1_3:47248969-47248988 | None:intergenic | 10.0% |
| !!! | TTAAAAAAAAAAATCCATTT+TGG | + | chr1_3:47250321-47250340 | None:intergenic | 10.0% |
| !!! | AAATGGATTTTTTTTTTTAA+AGG | - | chr1_3:47250321-47250340 | Msa0121430:intron | 10.0% |
| !!! | GGTATTTTAATATTAAATAT+AGG | + | chr1_3:47250800-47250819 | None:intergenic | 10.0% |
| !! | CAAAAAATATACTAAAATAT+AGG | + | chr1_3:47250772-47250791 | None:intergenic | 10.0% |
| !!! | GGTATTTTAATATTAAATAT+AGG | - | chr1_3:47250800-47250819 | Msa0121430:intron | 10.0% |
| !! | AAATGAAATTAATCCAAATT+AGG | + | chr1_3:47246701-47246720 | None:intergenic | 15.0% |
| !!! | CAATTTTAAAATTTAAACTC+AGG | + | chr1_3:47246951-47246970 | None:intergenic | 15.0% |
| !! | ATTCAGTTATATACAAATAA+TGG | + | chr1_3:47247013-47247032 | None:intergenic | 15.0% |
| !!! | TTATAAGTGTTAGAATATTT+TGG | - | chr1_3:47247053-47247072 | Msa0121430:intron | 15.0% |
| !!! | TTTCTTCTTTTAATAAAATC+TGG | - | chr1_3:47247267-47247286 | Msa0121430:intron | 15.0% |
| !! | GAACATATTTAACAAAAAAA+AGG | - | chr1_3:47247484-47247503 | Msa0121430:intron | 15.0% |
| !!! | TAAATTTCATTTTTCCTTTT+AGG | - | chr1_3:47247633-47247652 | Msa0121430:CDS | 15.0% |
| !!! | AAATTTCATTTTTCCTTTTA+GGG | - | chr1_3:47247634-47247653 | Msa0121430:CDS | 15.0% |
| !! | TATTTAACCATTGTATTTAT+AGG | - | chr1_3:47247765-47247784 | Msa0121430:intron | 15.0% |
| !! | AAAAAAAAAGGAAAAAAATG+AGG | - | chr1_3:47248876-47248895 | Msa0121430:intron | 15.0% |
| !!! | AATGATTCTTTTAAAATGTT+CGG | + | chr1_3:47249089-47249108 | None:intergenic | 15.0% |
| !! | TGAAATGAAAAAAAAGTTAA+GGG | + | chr1_3:47249973-47249992 | None:intergenic | 15.0% |
| !! | ATGAAATGAAAAAAAAGTTA+AGG | + | chr1_3:47249974-47249993 | None:intergenic | 15.0% |
| !!! | GTTTTTTATGTTTCATATTT+TGG | + | chr1_3:47250232-47250251 | None:intergenic | 15.0% |
| !! | TATGAAACATAAAAAACTTA+AGG | - | chr1_3:47250235-47250254 | Msa0121430:intron | 15.0% |
| !! | ATGAAACATAAAAAACTTAA+GGG | - | chr1_3:47250236-47250255 | Msa0121430:intron | 15.0% |
| !!! | AGTATATTTTTTGTATAGTA+TGG | - | chr1_3:47250779-47250798 | Msa0121430:intron | 15.0% |
| !! | TATAACTATTCTAAACAAAA+AGG | + | chr1_3:47251107-47251126 | None:intergenic | 15.0% |
| !!! | ATTTAGTATTGTTTTTGTTT+TGG | - | chr1_3:47251792-47251811 | Msa0121430:CDS | 15.0% |
| !!! | TATTAAAATTTGAAATCAGA+TGG | - | chr1_3:47252035-47252054 | Msa0121430:intron | 15.0% |
| !!! | ATTAAAATTTGAAATCAGAT+GGG | - | chr1_3:47252036-47252055 | Msa0121430:intron | 15.0% |
| !!! | TTTTTTTTATCTTTTTGGAT+AGG | + | chr1_3:47253101-47253120 | None:intergenic | 15.0% |
| !!! | CACTATTTTTTTTATCTTTT+TGG | + | chr1_3:47253106-47253125 | None:intergenic | 15.0% |
| !!! | GTTAAAGTGATATTTTTTTT+TGG | - | chr1_3:47253446-47253465 | Msa0121430:CDS | 15.0% |
| !!! | TGATATTTTTTTTTGGTTTA+TGG | - | chr1_3:47253453-47253472 | Msa0121430:CDS | 15.0% |
| !! | TAAATTCAATTAAACATTAG+TGG | + | chr1_3:47253718-47253737 | None:intergenic | 15.0% |
| !! | ATGTTTAATTGAATTTACTT+CGG | - | chr1_3:47253721-47253740 | Msa0121430:intron | 15.0% |
| !!! | AATTTAAATTGATGATTATG+AGG | + | chr1_3:47254033-47254052 | None:intergenic | 15.0% |
| !! | CATCAATTTAAATTAATGTT+TGG | - | chr1_3:47254039-47254058 | Msa0121430:intron | 15.0% |
| !! | CTTCGTTTATAGTTAATTAT+TGG | + | chr1_3:47246657-47246676 | None:intergenic | 20.0% |
| !!! | TTTGGATTAATTTCATTTTC+AGG | - | chr1_3:47246703-47246722 | Msa0121430:three_prime_UTR | 20.0% |
| !!! | TAATTTTTGTACCTACTTTT+CGG | - | chr1_3:47247203-47247222 | Msa0121430:intron | 20.0% |
| !!! | AACTTTTCTTCAAGTAAAAA+CGG | + | chr1_3:47247364-47247383 | None:intergenic | 20.0% |
| !!! | TAATTTGTAGAGACTAAAAA+AGG | - | chr1_3:47247416-47247435 | Msa0121430:CDS | 20.0% |
| !! | AATTTGTAGAGACTAAAAAA+GGG | - | chr1_3:47247417-47247436 | Msa0121430:CDS | 20.0% |
| !!! | CAAAAAAATGTACATTTTGT+AGG | - | chr1_3:47247455-47247474 | Msa0121430:intron | 20.0% |
| !! | GATTAATGACAAACAATTAT+TGG | + | chr1_3:47247540-47247559 | None:intergenic | 20.0% |
| !! | TTAATATTGTGGAAATGAAA+AGG | + | chr1_3:47247600-47247619 | None:intergenic | 20.0% |
| !! | AAAAAGTTTAGATGAAAGAT+CGG | - | chr1_3:47247886-47247905 | Msa0121430:intron | 20.0% |
| !! | CCTTTAAATTGTATTAAAGT+TGG | + | chr1_3:47248010-47248029 | None:intergenic | 20.0% |
| !! | CCAACTTTAATACAATTTAA+AGG | - | chr1_3:47248007-47248026 | Msa0121430:CDS | 20.0% |
| !! | TAATAAAGAAAAACAGAACA+CGG | + | chr1_3:47248911-47248930 | None:intergenic | 20.0% |
| !! | TCACAATATCAAACAAATAT+GGG | + | chr1_3:47248943-47248962 | None:intergenic | 20.0% |
| !! | ATCACAATATCAAACAAATA+TGG | + | chr1_3:47248944-47248963 | None:intergenic | 20.0% |
| !!! | GAACATTTTAAAAGAATCAT+TGG | - | chr1_3:47249088-47249107 | Msa0121430:intron | 20.0% |
| !!! | AGTTTTATTATGTTTGAATC+TGG | - | chr1_3:47249615-47249634 | Msa0121430:intron | 20.0% |
| !!! | CTGGATTTGAAATATATATA+GGG | - | chr1_3:47249658-47249677 | Msa0121430:intron | 20.0% |
| !! | ATTTAGATATTACGTATTGT+TGG | - | chr1_3:47249894-47249913 | Msa0121430:intron | 20.0% |
| !! | AAACCTAAAAATAACTTTAG+GGG | + | chr1_3:47249941-47249960 | None:intergenic | 20.0% |
| !! | GAAACCTAAAAATAACTTTA+GGG | + | chr1_3:47249942-47249961 | None:intergenic | 20.0% |
| !! | TGAAACCTAAAAATAACTTT+AGG | + | chr1_3:47249943-47249962 | None:intergenic | 20.0% |
| !!! | ATGTGTTTAATGTTACTTAA+GGG | + | chr1_3:47250003-47250022 | None:intergenic | 20.0% |
| !!! | AATGTGTTTAATGTTACTTA+AGG | + | chr1_3:47250004-47250023 | None:intergenic | 20.0% |
| !! | TTAAGTAACATTAAACACAT+TGG | - | chr1_3:47250003-47250022 | Msa0121430:intron | 20.0% |
| !! | GTCTATAATTAGCAATTTAA+TGG | + | chr1_3:47250094-47250113 | None:intergenic | 20.0% |
| !! | AAATGGAACGTAAAAATTTA+AGG | - | chr1_3:47250263-47250282 | Msa0121430:intron | 20.0% |
| !! | AATGGAACGTAAAAATTTAA+GGG | - | chr1_3:47250264-47250283 | Msa0121430:intron | 20.0% |
| !!! | CCATATCATAAAATATGTTT+TGG | + | chr1_3:47251377-47251396 | None:intergenic | 20.0% |
| !!! | CCAAAACATATTTTATGATA+TGG | - | chr1_3:47251374-47251393 | Msa0121430:intron | 20.0% |
| !! | TATATATACATCAAGCAAAT+GGG | + | chr1_3:47251403-47251422 | None:intergenic | 20.0% |
| !! | ATATATATACATCAAGCAAA+TGG | + | chr1_3:47251404-47251423 | None:intergenic | 20.0% |
| !! | AAACTGTAGAAAAACAAAAA+AGG | + | chr1_3:47252191-47252210 | None:intergenic | 20.0% |
| !!! | TTTTTCAGATATTAGTTTTC+TGG | + | chr1_3:47252595-47252614 | None:intergenic | 20.0% |
| !!! | AGTATGCATTTTCATATTAA+TGG | - | chr1_3:47253012-47253031 | Msa0121430:CDS | 20.0% |
| !!! | GTATGCATTTTCATATTAAT+GGG | - | chr1_3:47253013-47253032 | Msa0121430:CDS | 20.0% |
| !!! | TTTTCATATTAATGGGTTAT+TGG | - | chr1_3:47253020-47253039 | Msa0121430:CDS | 20.0% |
| !! | AAATTTCAGTTAGTAACTAT+TGG | - | chr1_3:47253361-47253380 | Msa0121430:intron | 20.0% |
| !!! | TTTTTTTTGGTTTATGGTAA+AGG | - | chr1_3:47253459-47253478 | Msa0121430:CDS | 20.0% |
| !!! | TCATTTCAATGATTTGTTAT+CGG | - | chr1_3:47253491-47253510 | Msa0121430:CDS | 20.0% |
| !!! | TATATGTTGTTCTTTTAAGA+AGG | + | chr1_3:47253562-47253581 | None:intergenic | 20.0% |
| !! | TGTTTAATTGAATTTACTTC+GGG | - | chr1_3:47253722-47253741 | Msa0121430:intron | 20.0% |
| !! | TAAGATTTAATAACAACTTG+TGG | - | chr1_3:47253832-47253851 | Msa0121430:intron | 20.0% |
| !!! | TAGATAAAATTTGTTGTTGA+TGG | - | chr1_3:47253862-47253881 | Msa0121430:intron | 20.0% |
| !! | TTAGGAGAAAATAAACAATT+AGG | - | chr1_3:47254641-47254660 | Msa0121430:intron | 20.0% |
| !! | TGCTTCTAAGAACAATTAAA+CGG | + | chr1_3:47247565-47247584 | None:intergenic | 25.0% |
| ! | ATCATACTTGCTTAATATTG+TGG | + | chr1_3:47247611-47247630 | None:intergenic | 25.0% |
| ! | TTCAGTTCAAAATTTAGCAA+GGG | + | chr1_3:47247664-47247683 | None:intergenic | 25.0% |
| !!! | CAACATTGATTCTTTAGAAA+CGG | - | chr1_3:47247862-47247881 | Msa0121430:intron | 25.0% |
| !!! | AACATTGATTCTTTAGAAAC+GGG | - | chr1_3:47247863-47247882 | Msa0121430:intron | 25.0% |
| !! | CAAATTTTCACTTTAATACC+TGG | - | chr1_3:47249047-47249066 | Msa0121430:intron | 25.0% |
| ! | TTTAGTCAAAGTCATTGTAA+TGG | - | chr1_3:47249127-47249146 | Msa0121430:intron | 25.0% |
| !!! | TAAGCAACTTTTCACTTTTT+AGG | - | chr1_3:47249183-47249202 | Msa0121430:intron | 25.0% |
| ! | CATTGAATAAATGATGTATG+TGG | + | chr1_3:47249208-47249227 | None:intergenic | 25.0% |
| ! | GTAAGTGTTTGGTATTATAT+TGG | - | chr1_3:47249570-47249589 | Msa0121430:intron | 25.0% |
| ! | TTTCAAATCCAGGTAAAAAA+GGG | + | chr1_3:47249650-47249669 | None:intergenic | 25.0% |
| ! | ATTTCAAATCCAGGTAAAAA+AGG | + | chr1_3:47249651-47249670 | None:intergenic | 25.0% |
| ! | CCTATATATATTTCAAATCC+AGG | + | chr1_3:47249660-47249679 | None:intergenic | 25.0% |
| !! | CCTGGATTTGAAATATATAT+AGG | - | chr1_3:47249657-47249676 | Msa0121430:intron | 25.0% |
| !! | TTTTACTTATCTCATTATGC+AGG | - | chr1_3:47249795-47249814 | Msa0121430:intron | 25.0% |
| ! | TTTACTTATCTCATTATGCA+GGG | - | chr1_3:47249796-47249815 | Msa0121430:intron | 25.0% |
| !! | TGTGTTTAATGTTACTTAAG+GGG | + | chr1_3:47250002-47250021 | None:intergenic | 25.0% |
| ! | TCTTAACCTTTGTAATGTAA+GGG | + | chr1_3:47250062-47250081 | None:intergenic | 25.0% |
| !! | GTCTCATTTTGTTAACTTAA+GGG | + | chr1_3:47250125-47250144 | None:intergenic | 25.0% |
| !! | TGTCTCATTTTGTTAACTTA+AGG | + | chr1_3:47250126-47250145 | None:intergenic | 25.0% |
| ! | ATTTGTAACTTAAGCCTTAA+GGG | - | chr1_3:47250173-47250192 | Msa0121430:intron | 25.0% |
| ! | AAAAACTTAAGGGATCAAAA+TGG | - | chr1_3:47250246-47250265 | Msa0121430:intron | 25.0% |
| !! | ATTTACAAACGTTGACATTT+TGG | + | chr1_3:47250291-47250310 | None:intergenic | 25.0% |
| ! | ATGTCAACGTTTGTAAATTA+AGG | - | chr1_3:47250293-47250312 | Msa0121430:intron | 25.0% |
| ! | TGTCAACGTTTGTAAATTAA+GGG | - | chr1_3:47250294-47250313 | Msa0121430:intron | 25.0% |
| !!! | GTTATTTTTAAGTTTCACTC+AGG | + | chr1_3:47250348-47250367 | None:intergenic | 25.0% |
| ! | ACTGGGAAATGTTAAAATAT+AGG | - | chr1_3:47250661-47250680 | Msa0121430:intron | 25.0% |
| ! | CTGGGAAATGTTAAAATATA+GGG | - | chr1_3:47250662-47250681 | Msa0121430:intron | 25.0% |
| ! | CTAAAATATAGGGTATAGTA+TGG | + | chr1_3:47250761-47250780 | None:intergenic | 25.0% |
| ! | ACAAGTTAAGAAGCTAAAAA+AGG | + | chr1_3:47250941-47250960 | None:intergenic | 25.0% |
| ! | AAACAGTAAAATTTAACAGC+AGG | + | chr1_3:47251333-47251352 | None:intergenic | 25.0% |
| !! | ACTTTGAGTCTTTTATGTTT+AGG | - | chr1_3:47251713-47251732 | Msa0121430:intron | 25.0% |
| !! | TATGTTTAGGATTTGAGAAT+TGG | - | chr1_3:47251726-47251745 | Msa0121430:intron | 25.0% |
| !!! | AGTATTGTTTTTGTTTTGGT+AGG | - | chr1_3:47251796-47251815 | Msa0121430:CDS | 25.0% |
| ! | TAATTCTGTAGGATTGAAAT+GGG | + | chr1_3:47251867-47251886 | None:intergenic | 25.0% |
| ! | TTAATTCTGTAGGATTGAAA+TGG | + | chr1_3:47251868-47251887 | None:intergenic | 25.0% |
| ! | TTCTACTCAATTAATTCTGT+AGG | + | chr1_3:47251878-47251897 | None:intergenic | 25.0% |
| !!! | GTCAATTTTTTAAGCAGTTT+TGG | - | chr1_3:47252714-47252733 | Msa0121430:CDS | 25.0% |
| !!! | TTTTTTAAGCAGTTTTGGAT+AGG | - | chr1_3:47252719-47252738 | Msa0121430:CDS | 25.0% |
| !! | GTTTTACAATCATGAGTTTA+GGG | + | chr1_3:47252796-47252815 | None:intergenic | 25.0% |
| !! | TGTTTTACAATCATGAGTTT+AGG | + | chr1_3:47252797-47252816 | None:intergenic | 25.0% |
| !! | TTTTATCTTTTTGGATAGGA+AGG | + | chr1_3:47253097-47253116 | None:intergenic | 25.0% |
| ! | ATAACACTAGTTAATGATTG+AGG | + | chr1_3:47253262-47253281 | None:intergenic | 25.0% |
| !!! | AGACACTTGTCTTTATTTTA+AGG | - | chr1_3:47253323-47253342 | Msa0121430:intron | 25.0% |
| ! | ATTAACAAGAACAGAATGAT+GGG | + | chr1_3:47253401-47253420 | None:intergenic | 25.0% |
| ! | AATTAACAAGAACAGAATGA+TGG | + | chr1_3:47253402-47253421 | None:intergenic | 25.0% |
| ! | TTATGTTATGCTCGTTTAAA+AGG | - | chr1_3:47253420-47253439 | Msa0121430:CDS | 25.0% |
| ! | TGTTCATTATTATAATACCC+AGG | - | chr1_3:47253628-47253647 | Msa0121430:intron | 25.0% |
| ! | TATATAACAAGGTATGATGA+TGG | - | chr1_3:47253996-47254015 | Msa0121430:intron | 25.0% |
| ! | GAATCATACTAATGATCTTA+AGG | - | chr1_3:47254222-47254241 | Msa0121430:intron | 25.0% |
| ! | ACATGCATTTAAATCAGTTA+GGG | - | chr1_3:47254258-47254277 | Msa0121430:intron | 25.0% |
| !! | TTGAATTTGTTTCTTAAGCT+TGG | - | chr1_3:47254341-47254360 | Msa0121430:intron | 25.0% |
| !! | TGAATTTGTTTCTTAAGCTT+GGG | - | chr1_3:47254342-47254361 | Msa0121430:intron | 25.0% |
| ! | CAACAGTTCACAATAATATT+AGG | + | chr1_3:47254374-47254393 | None:intergenic | 25.0% |
| ! | ATATTATTGTGAACTGTTGT+AGG | - | chr1_3:47254375-47254394 | Msa0121430:intron | 25.0% |
| ! | TATTATTGTGAACTGTTGTA+GGG | - | chr1_3:47254376-47254395 | Msa0121430:intron | 25.0% |
| ! | TACATAGGAATTGAAGATAA+TGG | - | chr1_3:47254399-47254418 | Msa0121430:intron | 25.0% |
| ! | ATTTAAATGTGCATACTAGA+TGG | + | chr1_3:47254527-47254546 | None:intergenic | 25.0% |
| !!! | GAAAGGATTAGTTTATGATT+AGG | - | chr1_3:47254623-47254642 | Msa0121430:intron | 25.0% |
| !!! | GTTTAGATAGTTTTAGTAAG+AGG | - | chr1_3:47254683-47254702 | Msa0121430:intron | 25.0% |
| TATAGTAGTAGTGGTGTAAA+TGG | - | chr1_3:47246415-47246434 | Msa0121430:three_prime_UTR | 30.0% | |
| ATAGTAGTAGTGGTGTAAAT+GGG | - | chr1_3:47246416-47246435 | Msa0121430:three_prime_UTR | 30.0% | |
| AAAGAAGAAGAAGAAGAAGA+AGG | + | chr1_3:47246622-47246641 | None:intergenic | 30.0% | |
| !!! | AATTTTAAAATTGCGTCTCG+CGG | - | chr1_3:47246958-47246977 | Msa0121430:intron | 30.0% |
| TGAAGAAAAGTTCACTCTTT+AGG | - | chr1_3:47247372-47247391 | Msa0121430:intron | 30.0% | |
| GAAGAAAAGTTCACTCTTTA+GGG | - | chr1_3:47247373-47247392 | Msa0121430:intron | 30.0% | |
| TTTAGGGAATAATAGCATGT+AGG | - | chr1_3:47247389-47247408 | Msa0121430:CDS | 30.0% | |
| AGAGATGCTTAACTAACTAA+TGG | + | chr1_3:47247512-47247531 | None:intergenic | 30.0% | |
| TCAGTTCAAAATTTAGCAAG+GGG | + | chr1_3:47247663-47247682 | None:intergenic | 30.0% | |
| GTTCAGTTCAAAATTTAGCA+AGG | + | chr1_3:47247665-47247684 | None:intergenic | 30.0% | |
| ! | TTTTACAAATGACCTCTAGT+AGG | - | chr1_3:47247701-47247720 | Msa0121430:intron | 30.0% |
| TTTACAAATGACCTCTAGTA+GGG | - | chr1_3:47247702-47247721 | Msa0121430:intron | 30.0% | |
| GGTCATTCCTATAAATACAA+TGG | + | chr1_3:47247775-47247794 | None:intergenic | 30.0% | |
| TTGTATTTATAGGAATGACC+TGG | - | chr1_3:47247775-47247794 | Msa0121430:intron | 30.0% | |
| !! | TTCTTAACGCACTATTTTTC+TGG | - | chr1_3:47247960-47247979 | Msa0121430:intron | 30.0% |
| ATTTAAAGGTCAGAATGAGA+AGG | - | chr1_3:47248021-47248040 | Msa0121430:CDS | 30.0% | |
| GTATCAACTGAATTTCTTCA+GGG | - | chr1_3:47248070-47248089 | Msa0121430:CDS | 30.0% | |
| TATCAACTGAATTTCTTCAG+GGG | - | chr1_3:47248071-47248090 | Msa0121430:CDS | 30.0% | |
| ! | AATCATCATTTGAGACAACA+CGG | - | chr1_3:47248356-47248375 | Msa0121430:intron | 30.0% |
| ! | GTCGCAAATTTTATTCAGAA+TGG | - | chr1_3:47248733-47248752 | Msa0121430:CDS | 30.0% |
| ATATTAGACTTACCTTCAAC+TGG | + | chr1_3:47248769-47248788 | None:intergenic | 30.0% | |
| !! | TGAAAATTTGAGTTGAAGCA+AGG | + | chr1_3:47249037-47249056 | None:intergenic | 30.0% |
| AATCATTGGCAACAAATTCT+TGG | - | chr1_3:47249102-47249121 | Msa0121430:intron | 30.0% | |
| ATCATTGGCAACAAATTCTT+GGG | - | chr1_3:47249103-47249122 | Msa0121430:intron | 30.0% | |
| TCGATTTAGTATACTTTCTC+CGG | - | chr1_3:47249151-47249170 | Msa0121430:intron | 30.0% | |
| AAGTTGCTTATAATTGAGAC+CGG | + | chr1_3:47249173-47249192 | None:intergenic | 30.0% | |
| TGAACCTAAAAAGTGAAAAG+TGG | - | chr1_3:47249265-47249284 | Msa0121430:intron | 30.0% | |
| !!! | TAAGCCACTTTTCACTTTTT+AGG | + | chr1_3:47249272-47249291 | None:intergenic | 30.0% |
| TTCAAATCCAGGTAAAAAAG+GGG | + | chr1_3:47249649-47249668 | None:intergenic | 30.0% | |
| !! | TCCAATTACTCATTTTGACA+AGG | - | chr1_3:47249703-47249722 | Msa0121430:intron | 30.0% |
| TCCTTGTCAAAATGAGTAAT+TGG | + | chr1_3:47249707-47249726 | None:intergenic | 30.0% | |
| !! | TACTCATTTTGACAAGGATT+TGG | - | chr1_3:47249709-47249728 | Msa0121430:intron | 30.0% |
| ! | GTGTTTAATGTTACTTAAGG+GGG | + | chr1_3:47250001-47250020 | None:intergenic | 30.0% |
| GTCTTAACCTTTGTAATGTA+AGG | + | chr1_3:47250063-47250082 | None:intergenic | 30.0% | |
| TTACAAAGGTTAAGACACTT+TGG | - | chr1_3:47250067-47250086 | Msa0121430:CDS | 30.0% | |
| ATTGCTAATTATAGACACGT+TGG | - | chr1_3:47250098-47250117 | Msa0121430:intron | 30.0% | |
| CATTTGTAACTTAAGCCTTA+AGG | - | chr1_3:47250172-47250191 | Msa0121430:intron | 30.0% | |
| TGTAAATTAAGGGACCAAAA+TGG | - | chr1_3:47250304-47250323 | Msa0121430:intron | 30.0% | |
| TTAACATTTCCCAGTATGAA+AGG | + | chr1_3:47250656-47250675 | None:intergenic | 30.0% | |
| GCGGACACTAATATATTTAA+GGG | + | chr1_3:47250989-47251008 | None:intergenic | 30.0% | |
| ! | TTCCTTTTGCAAATGCTATT+GGG | - | chr1_3:47251170-47251189 | Msa0121430:intron | 30.0% |
| TTTACAAAGTTCTCTTGTGA+AGG | + | chr1_3:47251438-47251457 | None:intergenic | 30.0% | |
| TCACAAGAGAACTTTGTAAA+TGG | - | chr1_3:47251438-47251457 | Msa0121430:CDS | 30.0% | |
| CTGTCATTAGTCATAATTGA+AGG | + | chr1_3:47251470-47251489 | None:intergenic | 30.0% | |
| ! | TCTTTTCATGTGATTTTGCA+GGG | + | chr1_3:47251556-47251575 | None:intergenic | 30.0% |
| ! | ATCTTTTCATGTGATTTTGC+AGG | + | chr1_3:47251557-47251576 | None:intergenic | 30.0% |
| TTAAAAATGAATTGCAGGCA+AGG | + | chr1_3:47251981-47252000 | None:intergenic | 30.0% | |
| !! | TTGCCTGCAATTCATTTTTA+AGG | - | chr1_3:47251980-47251999 | Msa0121430:intron | 30.0% |
| GATTGCTTAAAGTTTGTATG+AGG | - | chr1_3:47252127-47252146 | Msa0121430:intron | 30.0% | |
| ! | TTTGTATGAGGTTTGATTTC+TGG | - | chr1_3:47252139-47252158 | Msa0121430:intron | 30.0% |
| ! | TTGATTTCTGGACTTAATGT+TGG | - | chr1_3:47252151-47252170 | Msa0121430:intron | 30.0% |
| ! | TGATTTCTGGACTTAATGTT+GGG | - | chr1_3:47252152-47252171 | Msa0121430:intron | 30.0% |
| CTGTAGAAAAACAAAAAAGG+TGG | + | chr1_3:47252188-47252207 | None:intergenic | 30.0% | |
| ! | TCAGATTTTGGACACATATT+TGG | + | chr1_3:47252238-47252257 | None:intergenic | 30.0% |
| TTTGAGCAATAGATTTGATC+GGG | + | chr1_3:47252407-47252426 | None:intergenic | 30.0% | |
| CTTTGAGCAATAGATTTGAT+CGG | + | chr1_3:47252408-47252427 | None:intergenic | 30.0% | |
| ATGCTGAAAACAAAAACATG+TGG | + | chr1_3:47252526-47252545 | None:intergenic | 30.0% | |
| ATTGACAAATGCTAACCATT+AGG | + | chr1_3:47252700-47252719 | None:intergenic | 30.0% | |
| ! | GAATGTTGGTTATGAAATTG+AGG | - | chr1_3:47252741-47252760 | Msa0121430:CDS | 30.0% |
| AATTCTTTCTCTGACAAAAC+TGG | + | chr1_3:47252899-47252918 | None:intergenic | 30.0% | |
| GATCATACATATGCTGTATT+TGG | - | chr1_3:47253050-47253069 | Msa0121430:CDS | 30.0% | |
| ATTGAGGATCCATCTTTATT+GGG | + | chr1_3:47253246-47253265 | None:intergenic | 30.0% | |
| ATCAGTATTATTACTAAGCC+AGG | + | chr1_3:47253602-47253621 | None:intergenic | 30.0% | |
| ACTGCTAGATGTATATAACA+AGG | - | chr1_3:47253985-47254004 | Msa0121430:intron | 30.0% | |
| ! | TTTTGCTAAAAGCTACACTT+TGG | + | chr1_3:47254117-47254136 | None:intergenic | 30.0% |
| GACATGCATTTAAATCAGTT+AGG | - | chr1_3:47254257-47254276 | Msa0121430:intron | 30.0% | |
| ! | CTGACATTAACTAAAAGTGT+CGG | + | chr1_3:47254288-47254307 | None:intergenic | 30.0% |
| ! | GAATTTGTTTCTTAAGCTTG+GGG | - | chr1_3:47254343-47254362 | Msa0121430:intron | 30.0% |
| AGAAAATAAACAATTAGGCG+TGG | - | chr1_3:47254646-47254665 | Msa0121430:intron | 30.0% | |
| GAAAATAAACAATTAGGCGT+GGG | - | chr1_3:47254647-47254666 | Msa0121430:intron | 30.0% | |
| ACGATAAAAGTTAAAACCTG+TGG | + | chr1_3:47254709-47254728 | None:intergenic | 30.0% | |
| ! | TTTGTGGTTCATTTTCAATG+TGG | - | chr1_3:47254804-47254823 | Msa0121430:CDS | 30.0% |
| CACGAAATGAATTTGTATCA+CGG | + | chr1_3:47254840-47254859 | None:intergenic | 30.0% | |
| TAAGATGCAATGTAGTATGA+TGG | - | chr1_3:47254866-47254885 | Msa0121430:exon | 30.0% | |
| GCAAAGTAGTATAGTAGTAG+TGG | - | chr1_3:47246406-47246425 | Msa0121430:three_prime_UTR | 35.0% | |
| GAAATAACATAACCAGAGAG+TGG | + | chr1_3:47246447-47246466 | None:intergenic | 35.0% | |
| !! | AGAGAATATGCACTTGTTGT+TGG | + | chr1_3:47246507-47246526 | None:intergenic | 35.0% |
| CTTAAAAGCTCCTTAGTAGA+GGG | + | chr1_3:47246816-47246835 | None:intergenic | 35.0% | |
| AATAATTGAAAGACCTTCCG+TGG | + | chr1_3:47246839-47246858 | None:intergenic | 35.0% | |
| TCTGGTATGTTGCAAATGAT+TGG | - | chr1_3:47247285-47247304 | Msa0121430:intron | 35.0% | |
| CAAATGATTGGTAGAGTTTG+AGG | - | chr1_3:47247297-47247316 | Msa0121430:intron | 35.0% | |
| TTACAAATGACCTCTAGTAG+GGG | - | chr1_3:47247703-47247722 | Msa0121430:intron | 35.0% | |
| GAGAGGTCATAAAAAGATTC+AGG | - | chr1_3:47247814-47247833 | Msa0121430:intron | 35.0% | |
| CACATAATGAACTTGTGAGA+AGG | + | chr1_3:47247841-47247860 | None:intergenic | 35.0% | |
| CTTCTCACAAGTTCATTATG+TGG | - | chr1_3:47247839-47247858 | Msa0121430:intron | 35.0% | |
| GATATTGAGGTTCTATCAAC+AGG | - | chr1_3:47247920-47247939 | Msa0121430:intron | 35.0% | |
| ! | AAGAAATTCAGTTGATACCG+TGG | + | chr1_3:47248068-47248087 | None:intergenic | 35.0% |
| GGTATCAACTGAATTTCTTC+AGG | - | chr1_3:47248069-47248088 | Msa0121430:CDS | 35.0% | |
| ATCAACTGAATTTCTTCAGG+GGG | - | chr1_3:47248072-47248091 | Msa0121430:CDS | 35.0% | |
| GAAGTGCATTCATCTAAACT+CGG | + | chr1_3:47248130-47248149 | None:intergenic | 35.0% | |
| AAATATCCGAGGATTCTACA+GGG | + | chr1_3:47248156-47248175 | None:intergenic | 35.0% | |
| AAAATATCCGAGGATTCTAC+AGG | + | chr1_3:47248157-47248176 | None:intergenic | 35.0% | |
| ! | ATCCTCGGATATTTTATTCG+TGG | - | chr1_3:47248162-47248181 | Msa0121430:intron | 35.0% |
| ! | GATATTTTATTCGTGGAGGA+TGG | - | chr1_3:47248169-47248188 | Msa0121430:intron | 35.0% |
| ACCACTGTGGATAATGATTT+AGG | - | chr1_3:47248265-47248284 | Msa0121430:intron | 35.0% | |
| ACCTAAATCATTATCCACAG+TGG | + | chr1_3:47248269-47248288 | None:intergenic | 35.0% | |
| GAACTTTGGCTATCAAAGTT+CGG | + | chr1_3:47248313-47248332 | None:intergenic | 35.0% | |
| GATTCACCAGAAATTTCTGT+TGG | + | chr1_3:47248340-47248359 | None:intergenic | 35.0% | |
| TGACGCTTTAATGGGAAAAA+TGG | - | chr1_3:47248399-47248418 | Msa0121430:intron | 35.0% | |
| GCTTTAATGGGAAAAATGGT+TGG | - | chr1_3:47248403-47248422 | Msa0121430:intron | 35.0% | |
| !! | CATTATACGAAGTGTTGGAA+TGG | + | chr1_3:47248468-47248487 | None:intergenic | 35.0% |
| AGGATCATTATACGAAGTGT+TGG | + | chr1_3:47248473-47248492 | None:intergenic | 35.0% | |
| TTCTCTCTATTGTCAACATC+AGG | + | chr1_3:47248493-47248512 | None:intergenic | 35.0% | |
| TCTATGGACAAATCAACTGA+TGG | + | chr1_3:47248535-47248554 | None:intergenic | 35.0% | |
| ! | TGATTTGTCCATAGAGCAAA+AGG | - | chr1_3:47248540-47248559 | Msa0121430:intron | 35.0% |
| ! | AGACAAGTTGAATGAAGTGT+CGG | + | chr1_3:47248701-47248720 | None:intergenic | 35.0% |
| CACTTCATTCAACTTGTCTA+TGG | - | chr1_3:47248702-47248721 | Msa0121430:CDS | 35.0% | |
| TTCATTCAACTTGTCTATGG+AGG | - | chr1_3:47248705-47248724 | Msa0121430:CDS | 35.0% | |
| AAGTGGCTTATAATTGAGAC+CGG | - | chr1_3:47249282-47249301 | Msa0121430:intron | 35.0% | |
| !!! | CATTTTCCATCTGTCACTTT+AGG | - | chr1_3:47249324-47249343 | Msa0121430:intron | 35.0% |
| CATTATCCTAAAGTGACAGA+TGG | + | chr1_3:47249333-47249352 | None:intergenic | 35.0% | |
| TGCAAAAGGAGATGATTCTT+AGG | - | chr1_3:47249399-47249418 | Msa0121430:intron | 35.0% | |
| ATACCAAACACTTACCAAAG+AGG | + | chr1_3:47249565-47249584 | None:intergenic | 35.0% | |
| AAATCATCTCAAGTTCATGC+TGG | - | chr1_3:47249846-47249865 | Msa0121430:intron | 35.0% | |
| !!! | TGGCCCCTAAAGTTATTTTT+AGG | - | chr1_3:47249935-47249954 | Msa0121430:intron | 35.0% |
| TTTGGTCCCTTACATTACAA+AGG | - | chr1_3:47250053-47250072 | Msa0121430:CDS | 35.0% | |
| ! | GACACTTTAGTCTTCTCTTT+CGG | + | chr1_3:47250149-47250168 | None:intergenic | 35.0% |
| CGCGGACACTAATATATTTA+AGG | + | chr1_3:47250990-47251009 | None:intergenic | 35.0% | |
| TTGAATCTCTGTTGTCAAAG+CGG | + | chr1_3:47251084-47251103 | None:intergenic | 35.0% | |
| TAGCATTTGCAAAAGGAAGA+GGG | + | chr1_3:47251168-47251187 | None:intergenic | 35.0% | |
| ATAGCATTTGCAAAAGGAAG+AGG | + | chr1_3:47251169-47251188 | None:intergenic | 35.0% | |
| ! | CTTCCTTTTGCAAATGCTAT+TGG | - | chr1_3:47251169-47251188 | Msa0121430:intron | 35.0% |
| AGAACAGATTGAGAAGGAAA+AGG | - | chr1_3:47251231-47251250 | Msa0121430:intron | 35.0% | |
| GGTATGACATAAATTTGAGG+AGG | + | chr1_3:47251501-47251520 | None:intergenic | 35.0% | |
| GCAGGTATGACATAAATTTG+AGG | + | chr1_3:47251504-47251523 | None:intergenic | 35.0% | |
| !! | CGATATGATTTTAACGATCC+TGG | - | chr1_3:47251602-47251621 | Msa0121430:CDS | 35.0% |
| ! | TTGGTAGGATCTTTTGATCT+TGG | - | chr1_3:47251811-47251830 | Msa0121430:CDS | 35.0% |
| TAAGATCGCAATCAAGATCA+AGG | + | chr1_3:47251902-47251921 | None:intergenic | 35.0% | |
| ATCTAGCATCAGATCAAAAG+GGG | + | chr1_3:47251944-47251963 | None:intergenic | 35.0% | |
| GATCTAGCATCAGATCAAAA+GGG | + | chr1_3:47251945-47251964 | None:intergenic | 35.0% | |
| CCACCTTAAAAATGAATTGC+AGG | + | chr1_3:47251986-47252005 | None:intergenic | 35.0% | |
| !! | CCTGCAATTCATTTTTAAGG+TGG | - | chr1_3:47251983-47252002 | Msa0121430:intron | 35.0% |
| ! | TTTTGGACACATATTTGGCT+TGG | + | chr1_3:47252233-47252252 | None:intergenic | 35.0% |
| ! | TGCATGATGCTATCAGATTT+TGG | + | chr1_3:47252250-47252269 | None:intergenic | 35.0% |
| CGATCAAATCTATTGCTCAA+AGG | - | chr1_3:47252406-47252425 | Msa0121430:intron | 35.0% | |
| CAAATCTATTGCTCAAAGGA+AGG | - | chr1_3:47252410-47252429 | Msa0121430:intron | 35.0% | |
| TCATACATTACACAGAAGGA+CGG | + | chr1_3:47252478-47252497 | None:intergenic | 35.0% | |
| ACTCTCATACATTACACAGA+AGG | + | chr1_3:47252482-47252501 | None:intergenic | 35.0% | |
| ATGTGGCTAAGCAAATTGTA+TGG | + | chr1_3:47252509-47252528 | None:intergenic | 35.0% | |
| ! | CTTGCATTTTCTTGTCCTAA+TGG | - | chr1_3:47252682-47252701 | Msa0121430:CDS | 35.0% |
| CTATCACAATGAGGTTTAGA+GGG | + | chr1_3:47252991-47253010 | None:intergenic | 35.0% | |
| TCTATCACAATGAGGTTTAG+AGG | + | chr1_3:47252992-47253011 | None:intergenic | 35.0% | |
| TGCATACTTCTATCACAATG+AGG | + | chr1_3:47253000-47253019 | None:intergenic | 35.0% | |
| AACAAGAACCTGGAAATACA+AGG | + | chr1_3:47253164-47253183 | None:intergenic | 35.0% | |
| GATTGAGGATCCATCTTTAT+TGG | + | chr1_3:47253247-47253266 | None:intergenic | 35.0% | |
| ACTAGTGTTATAGACCATGA+TGG | - | chr1_3:47253271-47253290 | Msa0121430:intron | 35.0% | |
| !! | TTATAGACCATGATGGATCA+AGG | - | chr1_3:47253278-47253297 | Msa0121430:intron | 35.0% |
| ! | TTTAGAACCTTGATCCATCA+TGG | + | chr1_3:47253288-47253307 | None:intergenic | 35.0% |
| TTGTTATCGGAATAAGCCTA+TGG | - | chr1_3:47253504-47253523 | Msa0121430:intron | 35.0% | |
| ! | TACCCAGGAAATCAAGATTT+TGG | - | chr1_3:47253643-47253662 | Msa0121430:intron | 35.0% |
| GACCAAAATCTTGATTTCCT+GGG | + | chr1_3:47253648-47253667 | None:intergenic | 35.0% | |
| AGACCAAAATCTTGATTTCC+TGG | + | chr1_3:47253649-47253668 | None:intergenic | 35.0% | |
| !! | GAAATCAAGATTTTGGTCTG+CGG | - | chr1_3:47253650-47253669 | Msa0121430:intron | 35.0% |
| GATACAGTTGCAATTCGTTT+AGG | - | chr1_3:47253744-47253763 | Msa0121430:intron | 35.0% | |
| AGTAGATAGATGATGCATTC+TGG | - | chr1_3:47253951-47253970 | Msa0121430:intron | 35.0% | |
| ! | TTGATGATTATGAGGCAATG+TGG | + | chr1_3:47254025-47254044 | None:intergenic | 35.0% |
| TCAGTTTGACACAAACACTA+TGG | - | chr1_3:47254070-47254089 | Msa0121430:intron | 35.0% | |
| ! | TGTTACTTCCAGAATATACC+CGG | + | chr1_3:47254202-47254221 | None:intergenic | 35.0% |
| !! | TGTCAATTTTGACAGCAACA+TGG | - | chr1_3:47254442-47254461 | Msa0121430:intron | 35.0% |
| AACTAATCCTTTCACATACG+TGG | + | chr1_3:47254616-47254635 | None:intergenic | 35.0% | |
| CACAAAAAATGACTGAGAAG+AGG | + | chr1_3:47254790-47254809 | None:intergenic | 35.0% | |
| !!! | CTCTTCTCAGTCATTTTTTG+TGG | - | chr1_3:47254788-47254807 | Msa0121430:CDS | 35.0% |
| TACTTTCAGCTCAGCTGAAA+AGG | + | chr1_3:47246375-47246394 | None:intergenic | 40.0% | |
| TTCAGCTGAGCTGAAAGTAA+AGG | - | chr1_3:47246376-47246395 | Msa0121430:three_prime_UTR | 40.0% | |
| ATAACATAACCAGAGAGTGG+AGG | + | chr1_3:47246444-47246463 | None:intergenic | 40.0% | |
| AGAGATGTGTGAAGCAGTTT+GGG | + | chr1_3:47246469-47246488 | None:intergenic | 40.0% | |
| !! | TATGCACTTGTTGTTGGTGT+TGG | + | chr1_3:47246501-47246520 | None:intergenic | 40.0% |
| AAAGGTGGAAATGAGTGAGA+GGG | + | chr1_3:47246559-47246578 | None:intergenic | 40.0% | |
| AAAAGGTGGAAATGAGTGAG+AGG | + | chr1_3:47246560-47246579 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGGAAGCAAAAAGG+TGG | + | chr1_3:47246574-47246593 | None:intergenic | 40.0% |
| !! | TCATTTTCAGGAGAAGTCGA+AGG | - | chr1_3:47246715-47246734 | Msa0121430:three_prime_UTR | 40.0% |
| GAAATTGACGAATGTCAGAG+CGG | + | chr1_3:47246761-47246780 | None:intergenic | 40.0% | |
| GCTTAAAAGCTCCTTAGTAG+AGG | + | chr1_3:47246817-47246836 | None:intergenic | 40.0% | |
| ! | ACTAAGGAGCTTTTAAGCCA+CGG | - | chr1_3:47246819-47246838 | Msa0121430:three_prime_UTR | 40.0% |
| !!! | GCATGCAATTTTGCCACTTT+AGG | + | chr1_3:47247231-47247250 | None:intergenic | 40.0% |
| AGTGGCAAAATTGCATGCTT+TGG | - | chr1_3:47247233-47247252 | Msa0121430:intron | 40.0% | |
| TACAAATGACCTCTAGTAGG+GGG | - | chr1_3:47247704-47247723 | Msa0121430:intron | 40.0% | |
| GGATGCTGCAAATGATATTG+AGG | - | chr1_3:47247907-47247926 | Msa0121430:intron | 40.0% | |
| AATATCCGAGGATTCTACAG+GGG | + | chr1_3:47248155-47248174 | None:intergenic | 40.0% | |
| CTCCACGAATAAAATATCCG+AGG | + | chr1_3:47248167-47248186 | None:intergenic | 40.0% | |
| ! | CTCGGATATTTTATTCGTGG+AGG | - | chr1_3:47248165-47248184 | Msa0121430:intron | 40.0% |
| ! | AGTGATCTTTGAGTTCACCT+AGG | + | chr1_3:47248195-47248214 | None:intergenic | 40.0% |
| ! | CTCTAAAGAAGTCAACAACG+TGG | - | chr1_3:47248213-47248232 | Msa0121430:intron | 40.0% |
| GATTTAGGTAGTTCAAGCGA+AGG | - | chr1_3:47248280-47248299 | Msa0121430:intron | 40.0% | |
| TTTCTGTTGGCATGGAACTT+TGG | + | chr1_3:47248327-47248346 | None:intergenic | 40.0% | |
| TCCATGCCAACAGAAATTTC+TGG | - | chr1_3:47248331-47248350 | Msa0121430:intron | 40.0% | |
| ACCAGAAATTTCTGTTGGCA+TGG | + | chr1_3:47248335-47248354 | None:intergenic | 40.0% | |
| ! | TCATTTGAGACAACACGGTA+TGG | - | chr1_3:47248361-47248380 | Msa0121430:intron | 40.0% |
| AGAATGCGATGACGCTTTAA+TGG | - | chr1_3:47248390-47248409 | Msa0121430:intron | 40.0% | |
| GAATGCGATGACGCTTTAAT+GGG | - | chr1_3:47248391-47248410 | Msa0121430:intron | 40.0% | |
| AGAGAAAGAGTTCAGTCGTT+TGG | - | chr1_3:47248507-47248526 | Msa0121430:intron | 40.0% | |
| ! | GACAAGTTGAATGAAGTGTC+GGG | + | chr1_3:47248700-47248719 | None:intergenic | 40.0% |
| TCAACTTGTCTATGGAGGAA+AGG | - | chr1_3:47248710-47248729 | Msa0121430:CDS | 40.0% | |
| CAACTTGTCTATGGAGGAAA+GGG | - | chr1_3:47248711-47248730 | Msa0121430:CDS | 40.0% | |
| AGGCATTCATCACAACGATA+TGG | + | chr1_3:47248798-47248817 | None:intergenic | 40.0% | |
| ! | TTCAACTGTCAAAGGCATAG+TGG | + | chr1_3:47248822-47248841 | None:intergenic | 40.0% |
| TCACAAGCTTCAACTGTCAA+AGG | + | chr1_3:47248830-47248849 | None:intergenic | 40.0% | |
| CAAACAAATATGGGACTGAC+AGG | + | chr1_3:47248934-47248953 | None:intergenic | 40.0% | |
| TCCATAAAATGCATTCCCTC+CGG | + | chr1_3:47249304-47249323 | None:intergenic | 40.0% | |
| CATGTCTCTCACATTGCAAA+AGG | - | chr1_3:47249385-47249404 | Msa0121430:intron | 40.0% | |
| CATTGTTATCTTCAGGTGGA+TGG | + | chr1_3:47249477-47249496 | None:intergenic | 40.0% | |
| ATGGCATTGTTATCTTCAGG+TGG | + | chr1_3:47249481-47249500 | None:intergenic | 40.0% | |
| ACCTGAAGATAACAATGCCA+TGG | - | chr1_3:47249480-47249499 | Msa0121430:intron | 40.0% | |
| AACAATGCCATGGCACATAA+TGG | - | chr1_3:47249490-47249509 | Msa0121430:intron | 40.0% | |
| ACAATGCCATGGCACATAAT+GGG | - | chr1_3:47249491-47249510 | Msa0121430:intron | 40.0% | |
| ! | TCCAATCAAGTTGTTCCATC+TGG | - | chr1_3:47249526-47249545 | Msa0121430:intron | 40.0% |
| TCCAGATGGAACAACTTGAT+TGG | + | chr1_3:47249530-47249549 | None:intergenic | 40.0% | |
| AGTTGTTCCATCTGGAAAGT+TGG | - | chr1_3:47249534-47249553 | Msa0121430:intron | 40.0% | |
| ! | GGCTGACTAAATTACGCTTT+TGG | - | chr1_3:47249915-47249934 | Msa0121430:intron | 40.0% |
| TAAGACACTTTCGTCCCTTA+AGG | + | chr1_3:47250190-47250209 | None:intergenic | 40.0% | |
| CAACCCTCTGTTGTTAATAG+CGG | - | chr1_3:47250390-47250409 | Msa0121430:intron | 40.0% | |
| !! | CTTCTTAACTTGTGCCCTAA+GGG | - | chr1_3:47250948-47250967 | Msa0121430:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr1_3:47250965-47250984 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr1_3:47250966-47250985 | None:intergenic | 40.0% |
| CACCCAATAGCATTTGCAAA+AGG | + | chr1_3:47251175-47251194 | None:intergenic | 40.0% | |
| GCTGAAAGAACAGATTGAGA+AGG | - | chr1_3:47251225-47251244 | Msa0121430:intron | 40.0% | |
| ! | TATGCGTAAGCTTTGTGACT+AGG | - | chr1_3:47251637-47251656 | Msa0121430:intron | 40.0% |
| GGATCTAGCATCAGATCAAA+AGG | + | chr1_3:47251946-47251965 | None:intergenic | 40.0% | |
| AAATCAGATGGGTAATCGCT+TGG | - | chr1_3:47252047-47252066 | Msa0121430:intron | 40.0% | |
| ! | GTAATCGCTTGGTCTTCTAA+AGG | - | chr1_3:47252058-47252077 | Msa0121430:intron | 40.0% |
| ATACATTACACAGAAGGACG+GGG | + | chr1_3:47252476-47252495 | None:intergenic | 40.0% | |
| CATACATTACACAGAAGGAC+GGG | + | chr1_3:47252477-47252496 | None:intergenic | 40.0% | |
| TTTGTCTGTCTTGCAAACCA+AGG | - | chr1_3:47252548-47252567 | Msa0121430:CDS | 40.0% | |
| AAAAGATGCAGAGTTGCATG+AGG | - | chr1_3:47252611-47252630 | Msa0121430:CDS | 40.0% | |
| AGAAAGTCTTTCAGGACTCA+AGG | - | chr1_3:47252638-47252657 | Msa0121430:CDS | 40.0% | |
| CTCAAGGAGGTAATGCATTT+AGG | - | chr1_3:47252654-47252673 | Msa0121430:CDS | 40.0% | |
| AAGGAGGTAATGCATTTAGG+AGG | - | chr1_3:47252657-47252676 | Msa0121430:CDS | 40.0% | |
| !!! | GCAGTTTTGGATAGGAATGT+TGG | - | chr1_3:47252727-47252746 | Msa0121430:CDS | 40.0% |
| ATGAGTTTAGGGACTGTATG+TGG | + | chr1_3:47252785-47252804 | None:intergenic | 40.0% | |
| ! | GACAGCGCTCCTTTAAATTT+TGG | - | chr1_3:47252961-47252980 | Msa0121430:CDS | 40.0% |
| !! | GAGGGAGTGCCAAAATTTAA+AGG | + | chr1_3:47252973-47252992 | None:intergenic | 40.0% |
| ACTGTGTTCCTTGTATTTCC+AGG | - | chr1_3:47253153-47253172 | Msa0121430:CDS | 40.0% | |
| CACAGAATTCAACAAGAACC+TGG | + | chr1_3:47253174-47253193 | None:intergenic | 40.0% | |
| CAGGTTCTTGTTGAATTCTG+TGG | - | chr1_3:47253172-47253191 | Msa0121430:CDS | 40.0% | |
| CTCTCTATCACATATGCCAT+AGG | + | chr1_3:47253523-47253542 | None:intergenic | 40.0% | |
| AAGATTCGCAAGAATTGACC+TGG | - | chr1_3:47253581-47253600 | Msa0121430:intron | 40.0% | |
| GCTTTATCCTGGTGTATATG+AGG | - | chr1_3:47253680-47253699 | Msa0121430:intron | 40.0% | |
| !! | AATTTGTTGTTGATGGCGAC+TGG | - | chr1_3:47253869-47253888 | Msa0121430:intron | 40.0% |
| !! | TAGATGATGCATTCTGGTTC+AGG | - | chr1_3:47253957-47253976 | Msa0121430:intron | 40.0% |
| ! | AGCTTTTAGCAAAACCACAG+TGG | - | chr1_3:47254123-47254142 | Msa0121430:intron | 40.0% |
| TGGTGAATTTGGCAGAATCA+CGG | + | chr1_3:47254153-47254172 | None:intergenic | 40.0% | |
| GTTTGGATAGGTGGTGAATT+TGG | + | chr1_3:47254164-47254183 | None:intergenic | 40.0% | |
| CATTTAGTGCAGGTTTGGAT+AGG | + | chr1_3:47254176-47254195 | None:intergenic | 40.0% | |
| AAACCTGCACTAAATGTTCC+CGG | - | chr1_3:47254180-47254199 | Msa0121430:intron | 40.0% | |
| AAATGTTCCCGGGTATATTC+TGG | - | chr1_3:47254191-47254210 | Msa0121430:intron | 40.0% | |
| GTTACTTCCAGAATATACCC+GGG | + | chr1_3:47254201-47254220 | None:intergenic | 40.0% | |
| TGAACTGTTGTAGGGTACAT+AGG | - | chr1_3:47254384-47254403 | Msa0121430:intron | 40.0% | |
| TTGACAGCAACATGGAAAAG+AGG | - | chr1_3:47254450-47254469 | Msa0121430:intron | 40.0% | |
| TGACAGCAACATGGAAAAGA+GGG | - | chr1_3:47254451-47254470 | Msa0121430:intron | 40.0% | |
| ACATCTTCCACGTATGTGAA+AGG | - | chr1_3:47254606-47254625 | Msa0121430:intron | 40.0% | |
| !!! | TAGTTTTAGTAAGAGGCCAC+AGG | - | chr1_3:47254690-47254709 | Msa0121430:intron | 40.0% |
| TCTCCAAATAGATACAGCGA+TGG | + | chr1_3:47254740-47254759 | None:intergenic | 40.0% | |
| GGAGAAAACGATTGCTTCAT+TGG | - | chr1_3:47254755-47254774 | Msa0121430:CDS | 40.0% | |
| AAAATGACTGAGAAGAGGAG+AGG | + | chr1_3:47254785-47254804 | None:intergenic | 40.0% | |
| ! | CATTTTCAATGTGGCTCACA+AGG | - | chr1_3:47254813-47254832 | Msa0121430:CDS | 40.0% |
| CAGAGATGTGTGAAGCAGTT+TGG | + | chr1_3:47246470-47246489 | None:intergenic | 45.0% | |
| AACTGCTTCACACATCTCTG+TGG | - | chr1_3:47246470-47246489 | Msa0121430:three_prime_UTR | 45.0% | |
| !! | ATAGTGGATTGGTGTTGCGT+TGG | + | chr1_3:47246530-47246549 | None:intergenic | 45.0% |
| !! | GAGGGAGAGAAATAGTGGAT+TGG | + | chr1_3:47246541-47246560 | None:intergenic | 45.0% |
| AGTGAGAGGGAGAGAAATAG+TGG | + | chr1_3:47246546-47246565 | None:intergenic | 45.0% | |
| !!! | CGGTGGTTTTGGAAGCAAAA+AGG | + | chr1_3:47246577-47246596 | None:intergenic | 45.0% |
| !! | AAGAAGAAGGTGTTACCGTG+TGG | + | chr1_3:47246609-47246628 | None:intergenic | 45.0% |
| CGTCAATTTCTCGACGAAGT+TGG | - | chr1_3:47246771-47246790 | Msa0121430:three_prime_UTR | 45.0% | |
| !! | CACTTTAGGCACCGAAAAGT+AGG | + | chr1_3:47247217-47247236 | None:intergenic | 45.0% |
| !!! | CTACTTTTCGGTGCCTAAAG+TGG | - | chr1_3:47247215-47247234 | Msa0121430:intron | 45.0% |
| TTGCATGCTTTGGTCACTCT+AGG | - | chr1_3:47247243-47247262 | Msa0121430:intron | 45.0% | |
| ACACATAATCCCCCTACTAG+AGG | + | chr1_3:47247716-47247735 | None:intergenic | 45.0% | |
| ACCTGGCAAACATTGTCAGA+CGG | - | chr1_3:47247792-47247811 | Msa0121430:intron | 45.0% | |
| GGTCAGAATGAGAAGGTTGA+CGG | - | chr1_3:47248028-47248047 | Msa0121430:CDS | 45.0% | |
| TCCATTGACAGTTCCTTCCA+CGG | - | chr1_3:47248438-47248457 | Msa0121430:intron | 45.0% | |
| ! | TTGGAATGGTTTTCCGTGGA+AGG | + | chr1_3:47248454-47248473 | None:intergenic | 45.0% |
| !! | AGTGTTGGAATGGTTTTCCG+TGG | + | chr1_3:47248458-47248477 | None:intergenic | 45.0% |
| TGTCCATAGAGCAAAAGGAC+TGG | - | chr1_3:47248545-47248564 | Msa0121430:intron | 45.0% | |
| GTCCATAGAGCAAAAGGACT+GGG | - | chr1_3:47248546-47248565 | Msa0121430:intron | 45.0% | |
| TCCATAGAGCAAAAGGACTG+GGG | - | chr1_3:47248547-47248566 | Msa0121430:intron | 45.0% | |
| GGAGATCTAGATCCAGTTGA+AGG | - | chr1_3:47248754-47248773 | Msa0121430:intron | 45.0% | |
| ! | ACTGTCAAAGGCATAGTGGT+AGG | + | chr1_3:47248818-47248837 | None:intergenic | 45.0% |
| GGAAACTAGACAAGCTAACC+AGG | + | chr1_3:47249068-47249087 | None:intergenic | 45.0% | |
| TGGCTTATAATTGAGACCGG+AGG | - | chr1_3:47249285-47249304 | Msa0121430:intron | 45.0% | |
| GGCTTATAATTGAGACCGGA+GGG | - | chr1_3:47249286-47249305 | Msa0121430:intron | 45.0% | |
| ! | ACCGGAGGGAATGCATTTTA+TGG | - | chr1_3:47249300-47249319 | Msa0121430:intron | 45.0% |
| GCCATGGCATTGTTATCTTC+AGG | + | chr1_3:47249484-47249503 | None:intergenic | 45.0% | |
| TGAGTTCCCATTATGTGCCA+TGG | + | chr1_3:47249500-47249519 | None:intergenic | 45.0% | |
| CAAACACTTACCAAAGAGGC+TGG | + | chr1_3:47249561-47249580 | None:intergenic | 45.0% | |
| CAGCCTCTTTGGTAAGTGTT+TGG | - | chr1_3:47249559-47249578 | Msa0121430:intron | 45.0% | |
| !!! | CTGAGATCCCCTTTTTTACC+TGG | - | chr1_3:47249639-47249658 | Msa0121430:intron | 45.0% |
| GGATGATCACATGCTACATG+AGG | - | chr1_3:47249679-47249698 | Msa0121430:intron | 45.0% | |
| TGACAAGGATTTGGATGCTG+AGG | - | chr1_3:47249718-47249737 | Msa0121430:intron | 45.0% | |
| !! | GCTTCTTAACTTGTGCCCTA+AGG | - | chr1_3:47250947-47250966 | Msa0121430:intron | 45.0% |
| TATTGGGTGCTAGTACCAGA+AGG | - | chr1_3:47251186-47251205 | Msa0121430:intron | 45.0% | |
| AGAAGGAGTTGGAACTGTCT+CGG | - | chr1_3:47251203-47251222 | Msa0121430:intron | 45.0% | |
| GAAGCATAAACAACGCTTGC+AGG | + | chr1_3:47251522-47251541 | None:intergenic | 45.0% | |
| CGCATAAACAACTCAAAGCC+AGG | + | chr1_3:47251623-47251642 | None:intergenic | 45.0% | |
| GAGGCTGAAGAAAGTCTTTC+AGG | - | chr1_3:47252630-47252649 | Msa0121430:CDS | 45.0% | |
| AAGTCTTTCAGGACTCAAGG+AGG | - | chr1_3:47252641-47252660 | Msa0121430:CDS | 45.0% | |
| CACCAGAATCCTGCCTTTAT+GGG | - | chr1_3:47252842-47252861 | Msa0121430:CDS | 45.0% | |
| ACCAGAATCCTGCCTTTATG+GGG | - | chr1_3:47252843-47252862 | Msa0121430:CDS | 45.0% | |
| CTAAAGACACAGCCCCATAA+AGG | + | chr1_3:47252858-47252877 | None:intergenic | 45.0% | |
| CTTGTTGAATTCTGTGGCGA+CGG | - | chr1_3:47253178-47253197 | Msa0121430:CDS | 45.0% | |
| CTGGCATCACCCAATAAAGA+TGG | - | chr1_3:47253234-47253253 | Msa0121430:CDS | 45.0% | |
| ACTGGAGAACAGATCCACAA+AGG | - | chr1_3:47253887-47253906 | Msa0121430:intron | 45.0% | |
| CTGGAGAACAGATCCACAAA+GGG | - | chr1_3:47253888-47253907 | Msa0121430:intron | 45.0% | |
| TTAGTGCAGGTTTGGATAGG+TGG | + | chr1_3:47254173-47254192 | None:intergenic | 45.0% | |
| GGGAACATTTAGTGCAGGTT+TGG | + | chr1_3:47254181-47254200 | None:intergenic | 45.0% | |
| AACCTGCACTAAATGTTCCC+GGG | - | chr1_3:47254181-47254200 | Msa0121430:intron | 45.0% | |
| GACAGCAACATGGAAAAGAG+GGG | - | chr1_3:47254452-47254471 | Msa0121430:intron | 45.0% | |
| CCAAATAGATACAGCGATGG+TGG | + | chr1_3:47254737-47254756 | None:intergenic | 45.0% | |
| CCACCATCGCTGTATCTATT+TGG | - | chr1_3:47254734-47254753 | Msa0121430:CDS | 45.0% | |
| !! | TATTAAGTAAAAAAAAAAAA+AGG | - | chr1_3:47248864-47248883 | Msa0121430:intron | 5.0% |
| !! | TAAAATGAAAAAAAAAATAT+AGG | + | chr1_3:47250032-47250051 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTCATTTTATTT+TGG | - | chr1_3:47250035-47250054 | Msa0121430:intron | 5.0% |
| !!! | GTATTTTAATATTAAATATA+GGG | + | chr1_3:47250801-47250820 | None:intergenic | 5.0% |
| !! | AAAAAATATACTAAAATATA+GGG | + | chr1_3:47250771-47250790 | None:intergenic | 5.0% |
| CTGAAAAGGAACCCAGGACA+AGG | + | chr1_3:47246361-47246380 | None:intergenic | 50.0% | |
| AAATGGGTACCTCCACTCTC+TGG | - | chr1_3:47246432-47246451 | Msa0121430:three_prime_UTR | 50.0% | |
| ! | AAGGTGTTACCGTGTGGTTG+TGG | + | chr1_3:47246603-47246622 | None:intergenic | 50.0% |
| GTCAGAGCGGATCTCATCAT+CGG | + | chr1_3:47246748-47246767 | None:intergenic | 50.0% | |
| !! | GACGAAGTTGGTCTTCCTCA+TGG | - | chr1_3:47246783-47246802 | Msa0121430:three_prime_UTR | 50.0% |
| TGGCCACATTCCCTCTACTA+AGG | - | chr1_3:47246803-47246822 | Msa0121430:three_prime_UTR | 50.0% | |
| GCTCCTTAGTAGAGGGAATG+TGG | + | chr1_3:47246809-47246828 | None:intergenic | 50.0% | |
| ! | AGGAGCTTTTAAGCCACGGA+AGG | - | chr1_3:47246823-47246842 | Msa0121430:three_prime_UTR | 50.0% |
| TTGCGTCTCGCGGTAACTAA+AGG | - | chr1_3:47246968-47246987 | Msa0121430:intron | 50.0% | |
| TAGCAAGGGGACTCCCTAAA+AGG | + | chr1_3:47247650-47247669 | None:intergenic | 50.0% | |
| TCCGTCTGACAATGTTTGCC+AGG | + | chr1_3:47247796-47247815 | None:intergenic | 50.0% | |
| GCAAACATTGTCAGACGGAG+AGG | - | chr1_3:47247797-47247816 | Msa0121430:intron | 50.0% | |
| GAATGAGAAGGTTGACGGCT+CGG | - | chr1_3:47248033-47248052 | Msa0121430:CDS | 50.0% | |
| TTTCTTCAGGGGGACAGTTC+TGG | - | chr1_3:47248082-47248101 | Msa0121430:CDS | 50.0% | |
| TTATTCGTGGAGGATGGCCT+AGG | - | chr1_3:47248175-47248194 | Msa0121430:intron | 50.0% | |
| AGAAGTCAACAACGTGGCAG+AGG | - | chr1_3:47248219-47248238 | Msa0121430:intron | 50.0% | |
| GAAGTCAACAACGTGGCAGA+GGG | - | chr1_3:47248220-47248239 | Msa0121430:intron | 50.0% | |
| AAGTCAACAACGTGGCAGAG+GGG | - | chr1_3:47248221-47248240 | Msa0121430:intron | 50.0% | |
| CAGTGGTCACTTCAGTTGGA+TGG | + | chr1_3:47248252-47248271 | None:intergenic | 50.0% | |
| TCCAACTGAAGTGACCACTG+TGG | - | chr1_3:47248252-47248271 | Msa0121430:intron | 50.0% | |
| TCCACAGTGGTCACTTCAGT+TGG | + | chr1_3:47248256-47248275 | None:intergenic | 50.0% | |
| TCCGTGGAAGGAACTGTCAA+TGG | + | chr1_3:47248442-47248461 | None:intergenic | 50.0% | |
| ! | ACCCCAGTCCTTTTGCTCTA+TGG | + | chr1_3:47248551-47248570 | None:intergenic | 50.0% |
| GATGATGTTCCCACAACCTC+TGG | - | chr1_3:47248610-47248629 | Msa0121430:intron | 50.0% | |
| AACTCAGAGCCAGAGGTTGT+GGG | + | chr1_3:47248622-47248641 | None:intergenic | 50.0% | |
| AAACTCAGAGCCAGAGGTTG+TGG | + | chr1_3:47248623-47248642 | None:intergenic | 50.0% | |
| CTCAGAAAACTCAGAGCCAG+AGG | + | chr1_3:47248629-47248648 | None:intergenic | 50.0% | |
| CCTAGTGGCATATCAACAGC+AGG | + | chr1_3:47249451-47249470 | None:intergenic | 50.0% | |
| CCTGCTGTTGATATGCCACT+AGG | - | chr1_3:47249448-47249467 | Msa0121430:intron | 50.0% | |
| GAAAGTTGGACCAGCCTCTT+TGG | - | chr1_3:47249548-47249567 | Msa0121430:intron | 50.0% | |
| CGGCCGCTATTAACAACAGA+GGG | + | chr1_3:47250396-47250415 | None:intergenic | 50.0% | |
| !!! | GTAGGCTGTTTTTTGCCGCT+CGG | + | chr1_3:47250421-47250440 | None:intergenic | 50.0% |
| AGGGAAAAGCGGGTCAATAG+CGG | - | chr1_3:47250470-47250489 | Msa0121430:intron | 50.0% | |
| !!! | GGTCAAAGCGCCGCTTTTTT+GGG | - | chr1_3:47250536-47250555 | Msa0121430:intron | 50.0% |
| !!! | AAAGCGCCGCTTTTTTGGGT+CGG | - | chr1_3:47250540-47250559 | Msa0121430:intron | 50.0% |
| TGTGCTCCGACCCAAAAAAG+CGG | + | chr1_3:47250549-47250568 | None:intergenic | 50.0% | |
| TTGGGTCGGAGCACAAAACA+AGG | - | chr1_3:47250554-47250573 | Msa0121430:intron | 50.0% | |
| ACGGGTCACATGGCTGAAAT+GGG | + | chr1_3:47250607-47250626 | None:intergenic | 50.0% | |
| AACGGGTCACATGGCTGAAA+TGG | + | chr1_3:47250608-47250627 | None:intergenic | 50.0% | |
| TGGGTCAAAAACGGGTCACA+TGG | + | chr1_3:47250617-47250636 | None:intergenic | 50.0% | |
| GGGTCGTATGGGTCAAAAAC+GGG | + | chr1_3:47250625-47250644 | None:intergenic | 50.0% | |
| CGGGTCGTATGGGTCAAAAA+CGG | + | chr1_3:47250626-47250645 | None:intergenic | 50.0% | |
| ! | CGTTTTTGACCCATACGACC+CGG | - | chr1_3:47250624-47250643 | Msa0121430:intron | 50.0% |
| ! | CAGTATGAAAGGCACGAACC+GGG | + | chr1_3:47250645-47250664 | None:intergenic | 50.0% |
| ! | CCAGTATGAAAGGCACGAAC+CGG | + | chr1_3:47250646-47250665 | None:intergenic | 50.0% |
| CGGTTCGTGCCTTTCATACT+GGG | - | chr1_3:47250644-47250663 | Msa0121430:intron | 50.0% | |
| GTGCTAGTACCAGAAGGAGT+TGG | - | chr1_3:47251192-47251211 | Msa0121430:intron | 50.0% | |
| GAGACAGTTCCAACTCCTTC+TGG | + | chr1_3:47251204-47251223 | None:intergenic | 50.0% | |
| CAGGCAAGGTTGTCAGAATC+GGG | + | chr1_3:47251967-47251986 | None:intergenic | 50.0% | |
| GCAGGCAAGGTTGTCAGAAT+CGG | + | chr1_3:47251968-47251987 | None:intergenic | 50.0% | |
| !! | GGACACATATTTGGCTTGGC+AGG | + | chr1_3:47252229-47252248 | None:intergenic | 50.0% |
| TTACACAGAAGGACGGGGAA+GGG | + | chr1_3:47252471-47252490 | None:intergenic | 50.0% | |
| ATTACACAGAAGGACGGGGA+AGG | + | chr1_3:47252472-47252491 | None:intergenic | 50.0% | |
| TGTCTTGCAAACCAAGGCAG+AGG | - | chr1_3:47252554-47252573 | Msa0121430:CDS | 50.0% | |
| ! | GCTGATTTCTTCCTCTGCCT+TGG | + | chr1_3:47252568-47252587 | None:intergenic | 50.0% |
| CCATAAAGGCAGGATTCTGG+TGG | + | chr1_3:47252844-47252863 | None:intergenic | 50.0% | |
| CCACCAGAATCCTGCCTTTA+TGG | - | chr1_3:47252841-47252860 | Msa0121430:CDS | 50.0% | |
| CGCTGTCGCTGCTTCTTATA+CGG | + | chr1_3:47252948-47252967 | None:intergenic | 50.0% | |
| TACCCGGGAACATTTAGTGC+AGG | + | chr1_3:47254186-47254205 | None:intergenic | 50.0% | |
| GCTCAGCTGAAAAGGAACCC+AGG | + | chr1_3:47246367-47246386 | None:intergenic | 55.0% | |
| TTACCGTGTGGTTGTGGTGG+CGG | + | chr1_3:47246597-47246616 | None:intergenic | 55.0% | |
| GTGTTACCGTGTGGTTGTGG+TGG | + | chr1_3:47246600-47246619 | None:intergenic | 55.0% | |
| GTAGAGGGAATGTGGCCATG+AGG | + | chr1_3:47246801-47246820 | None:intergenic | 55.0% | |
| ! | AAGGTTGACGGCTCGGATGA+TGG | - | chr1_3:47248040-47248059 | Msa0121430:CDS | 55.0% |
| TTCCGCCCCTGTAGAATCCT+CGG | - | chr1_3:47248147-47248166 | Msa0121430:intron | 55.0% | |
| ATCCGAGGATTCTACAGGGG+CGG | + | chr1_3:47248152-47248171 | None:intergenic | 55.0% | |
| TCAGGTGGATGGACACCTAG+TGG | + | chr1_3:47249466-47249485 | None:intergenic | 55.0% | |
| ! | GGCTGGTCCAACTTTCCAGA+TGG | + | chr1_3:47249544-47249563 | None:intergenic | 55.0% |
| GCGGCCGCTATTAACAACAG+AGG | + | chr1_3:47250397-47250416 | None:intergenic | 55.0% | |
| !!! | CTGTTTTTTGCCGCTCGGAG+CGG | + | chr1_3:47250416-47250435 | None:intergenic | 55.0% |
| ! | CTTTTCCCTAACGCGCGACT+CGG | + | chr1_3:47250459-47250478 | None:intergenic | 55.0% |
| AGTCGCGCGTTAGGGAAAAG+CGG | - | chr1_3:47250459-47250478 | Msa0121430:intron | 55.0% | |
| GGGAAAAGCGGGTCAATAGC+GGG | - | chr1_3:47250471-47250490 | Msa0121430:intron | 55.0% | |
| !!! | GGGTCAAAGCGCCGCTTTTT+TGG | - | chr1_3:47250535-47250554 | Msa0121430:intron | 55.0% |
| ! | CCGGTTCGTGCCTTTCATAC+TGG | - | chr1_3:47250643-47250662 | Msa0121430:intron | 55.0% |
| ! | TACCGCGCCGCGTCAATTTT+TGG | - | chr1_3:47251040-47251059 | Msa0121430:intron | 55.0% |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | - | chr1_3:47251041-47251060 | Msa0121430:intron | 55.0% |
| GGCCACCCCAAAAATTGACG+CGG | + | chr1_3:47251050-47251069 | None:intergenic | 55.0% | |
| GTCAAAGCGGAAAAGCGACG+CGG | + | chr1_3:47251071-47251090 | None:intergenic | 55.0% | |
| GCCCCATAAAGGCAGGATTC+TGG | + | chr1_3:47252847-47252866 | None:intergenic | 55.0% | |
| AGACACAGCCCCATAAAGGC+AGG | + | chr1_3:47252854-47252873 | None:intergenic | 55.0% | |
| TGGCGACGGTGATGTTGTTG+AGG | - | chr1_3:47253192-47253211 | Msa0121430:CDS | 55.0% | |
| CGACGGTGATGTTGTTGAGG+TGG | - | chr1_3:47253195-47253214 | Msa0121430:CDS | 55.0% | |
| GGTGATGTTGTTGAGGTGGC+TGG | - | chr1_3:47253199-47253218 | Msa0121430:CDS | 55.0% | |
| GAGGTGGCTGGTAGCTTCAA+TGG | - | chr1_3:47253211-47253230 | Msa0121430:CDS | 55.0% | |
| TGGCTGGTAGCTTCAATGGC+TGG | - | chr1_3:47253215-47253234 | Msa0121430:CDS | 55.0% | |
| !! | GATTTTGGTCTGCGGTGCTG+TGG | - | chr1_3:47253658-47253677 | Msa0121430:intron | 55.0% |
| GCACGCACCTCATATACACC+AGG | + | chr1_3:47253690-47253709 | None:intergenic | 55.0% | |
| !! | CGAGCTACTGACTCCCTTTG+TGG | + | chr1_3:47253904-47253923 | None:intergenic | 55.0% |
| CAAAGGGAGTCAGTAGCTCG+AGG | - | chr1_3:47253904-47253923 | Msa0121430:intron | 55.0% | |
| ! | AGAATCACGGTGTGCCACTG+TGG | + | chr1_3:47254140-47254159 | None:intergenic | 55.0% |
| ! | TTAGGCGTGGGCTGATAGTG+AGG | - | chr1_3:47254659-47254678 | Msa0121430:intron | 55.0% |
| ! | TAGATACAGCGATGGTGGCG+TGG | + | chr1_3:47254732-47254751 | None:intergenic | 55.0% |
| !!! | GGTTGTGGTGGCGGTGGTTT+TGG | + | chr1_3:47246588-47246607 | None:intergenic | 60.0% |
| ! | CGGCTCGGATGATGGTACCA+CGG | - | chr1_3:47248048-47248067 | Msa0121430:CDS | 60.0% |
| TTAATAGCGGCCGCTCCGAG+CGG | - | chr1_3:47250403-47250422 | Msa0121430:intron | 60.0% | |
| GTCGCGCGTTAGGGAAAAGC+GGG | - | chr1_3:47250460-47250479 | Msa0121430:intron | 60.0% | |
| !! | CGGGTCAATAGCGGGTTTCG+CGG | - | chr1_3:47250479-47250498 | Msa0121430:intron | 60.0% |
| AGGCACGAACCGGGTCGTAT+GGG | + | chr1_3:47250636-47250655 | None:intergenic | 60.0% | |
| AAGGCACGAACCGGGTCGTA+TGG | + | chr1_3:47250637-47250656 | None:intergenic | 60.0% | |
| ! | GCGGGCGCTATTTCATGACG+CGG | + | chr1_3:47251008-47251027 | None:intergenic | 60.0% |
| AATTGACGCGGCGCGGTATG+CGG | + | chr1_3:47251038-47251057 | None:intergenic | 60.0% | |
| CCCCAAAAATTGACGCGGCG+CGG | + | chr1_3:47251045-47251064 | None:intergenic | 60.0% | |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | - | chr1_3:47251042-47251061 | Msa0121430:intron | 60.0% |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | - | chr1_3:47251045-47251064 | Msa0121430:intron | 60.0% |
| !! | GCGGTGCTGTGGCTTTATCC+TGG | - | chr1_3:47253669-47253688 | Msa0121430:intron | 60.0% |
| CCACCGCCACCACAACCACA+CGG | - | chr1_3:47246591-47246610 | Msa0121430:three_prime_UTR | 65.0% | |
| ! | GACTCGGTAGCGCTCTGACG+CGG | + | chr1_3:47250443-47250462 | None:intergenic | 65.0% |
| CGCTACCGAGTCGCGCGTTA+GGG | - | chr1_3:47250451-47250470 | Msa0121430:intron | 65.0% | |
| ATTGGTCCGCCTCGCTCCAC+CGG | + | chr1_3:47250512-47250531 | None:intergenic | 65.0% | |
| GGAGCGAGGCGGACCAATAG+CGG | - | chr1_3:47250514-47250533 | Msa0121430:intron | 65.0% | |
| GAGCGAGGCGGACCAATAGC+GGG | - | chr1_3:47250515-47250534 | Msa0121430:intron | 65.0% | |
| GCGGCGCTTTGACCCGCTAT+TGG | + | chr1_3:47250530-47250549 | None:intergenic | 65.0% | |
| ATTGACGCGGCGCGGTATGC+GGG | + | chr1_3:47251037-47251056 | None:intergenic | 65.0% | |
| !! | CCGTGTGGTTGTGGTGGCGG+TGG | + | chr1_3:47246594-47246613 | None:intergenic | 70.0% |
| CGGTAGCGCTCTGACGCGGT+AGG | + | chr1_3:47250439-47250458 | None:intergenic | 70.0% | |
| GCGCTACCGAGTCGCGCGTT+AGG | - | chr1_3:47250450-47250469 | Msa0121430:intron | 70.0% | |
| CGGGTTTCGCGGCCGCTATC+CGG | - | chr1_3:47250490-47250509 | Msa0121430:intron | 70.0% | |
| GTTTCGCGGCCGCTATCCGG+TGG | - | chr1_3:47250493-47250512 | Msa0121430:intron | 70.0% | |
| CGCCTCGCTCCACCGGATAG+CGG | + | chr1_3:47250505-47250524 | None:intergenic | 70.0% | |
| CGCTATCCGGTGGAGCGAGG+CGG | - | chr1_3:47250503-47250522 | Msa0121430:intron | 70.0% | |
| GGCCGCTATCCGGTGGAGCG+AGG | - | chr1_3:47250500-47250519 | Msa0121430:intron | 75.0% | |
| GCGGTATGCGGGCGCGTAGC+GGG | + | chr1_3:47251026-47251045 | None:intergenic | 75.0% | |
| CGCGGTATGCGGGCGCGTAG+CGG | + | chr1_3:47251027-47251046 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 47246358 | 47254947 | 47246358 | ID=Msa0121430;Name=Msa0121430 |
| chr1_3 | mRNA | 47246358 | 47254947 | 47246358 | ID=Msa0121430-mRNA-1;Parent=Msa0121430;Name=Msa0121430-mRNA-1;_AED=0.20;_eAED=0.20;_QI=76|0.83|0.84|1|1|1|13|516|627 |
| chr1_3 | exon | 47246358 | 47246908 | 47246358 | ID=Msa0121430-mRNA-1:exon:14276;Parent=Msa0121430-mRNA-1 |
| chr1_3 | exon | 47247380 | 47247440 | 47247380 | ID=Msa0121430-mRNA-1:exon:14275;Parent=Msa0121430-mRNA-1 |
| chr1_3 | exon | 47247604 | 47247655 | 47247604 | ID=Msa0121430-mRNA-1:exon:14274;Parent=Msa0121430-mRNA-1 |
| chr1_3 | exon | 47248006 | 47248130 | 47248006 | ID=Msa0121430-mRNA-1:exon:14273;Parent=Msa0121430-mRNA-1 |
| chr1_3 | exon | 47248643 | 47248762 | 47248643 | ID=Msa0121430-mRNA-1:exon:14272;Parent=Msa0121430-mRNA-1 |
| chr1_3 | exon | 47250053 | 47250106 | 47250053 | ID=Msa0121430-mRNA-1:exon:14271;Parent=Msa0121430-mRNA-1 |
| chr1_3 | exon | 47251438 | 47251488 | 47251438 | ID=Msa0121430-mRNA-1:exon:14270;Parent=Msa0121430-mRNA-1 |
| chr1_3 | exon | 47251566 | 47251626 | 47251566 | ID=Msa0121430-mRNA-1:exon:14269;Parent=Msa0121430-mRNA-1 |
| chr1_3 | exon | 47251736 | 47251859 | 47251736 | ID=Msa0121430-mRNA-1:exon:14268;Parent=Msa0121430-mRNA-1 |
| chr1_3 | exon | 47252530 | 47253276 | 47252530 | ID=Msa0121430-mRNA-1:exon:14267;Parent=Msa0121430-mRNA-1 |
| chr1_3 | exon | 47253364 | 47253518 | 47253364 | ID=Msa0121430-mRNA-1:exon:14266;Parent=Msa0121430-mRNA-1 |
| chr1_3 | exon | 47254461 | 47254580 | 47254461 | ID=Msa0121430-mRNA-1:exon:14265;Parent=Msa0121430-mRNA-1 |
| chr1_3 | exon | 47254693 | 47254947 | 47254693 | ID=Msa0121430-mRNA-1:exon:14264;Parent=Msa0121430-mRNA-1 |
| chr1_3 | five_prime_UTR | 47254872 | 47254947 | 47254872 | ID=Msa0121430-mRNA-1:five_prime_utr;Parent=Msa0121430-mRNA-1 |
| chr1_3 | CDS | 47254693 | 47254871 | 47254693 | ID=Msa0121430-mRNA-1:cds;Parent=Msa0121430-mRNA-1 |
| chr1_3 | CDS | 47254461 | 47254580 | 47254461 | ID=Msa0121430-mRNA-1:cds;Parent=Msa0121430-mRNA-1 |
| chr1_3 | CDS | 47253364 | 47253518 | 47253364 | ID=Msa0121430-mRNA-1:cds;Parent=Msa0121430-mRNA-1 |
| chr1_3 | CDS | 47252530 | 47253276 | 47252530 | ID=Msa0121430-mRNA-1:cds;Parent=Msa0121430-mRNA-1 |
| chr1_3 | CDS | 47251736 | 47251859 | 47251736 | ID=Msa0121430-mRNA-1:cds;Parent=Msa0121430-mRNA-1 |
| chr1_3 | CDS | 47251566 | 47251626 | 47251566 | ID=Msa0121430-mRNA-1:cds;Parent=Msa0121430-mRNA-1 |
| chr1_3 | CDS | 47251438 | 47251488 | 47251438 | ID=Msa0121430-mRNA-1:cds;Parent=Msa0121430-mRNA-1 |
| chr1_3 | CDS | 47250053 | 47250106 | 47250053 | ID=Msa0121430-mRNA-1:cds;Parent=Msa0121430-mRNA-1 |
| chr1_3 | CDS | 47248643 | 47248762 | 47248643 | ID=Msa0121430-mRNA-1:cds;Parent=Msa0121430-mRNA-1 |
| chr1_3 | CDS | 47248006 | 47248130 | 47248006 | ID=Msa0121430-mRNA-1:cds;Parent=Msa0121430-mRNA-1 |
| chr1_3 | CDS | 47247604 | 47247655 | 47247604 | ID=Msa0121430-mRNA-1:cds;Parent=Msa0121430-mRNA-1 |
| chr1_3 | CDS | 47247380 | 47247440 | 47247380 | ID=Msa0121430-mRNA-1:cds;Parent=Msa0121430-mRNA-1 |
| chr1_3 | CDS | 47246874 | 47246908 | 47246874 | ID=Msa0121430-mRNA-1:cds;Parent=Msa0121430-mRNA-1 |
| chr1_3 | three_prime_UTR | 47246358 | 47246873 | 47246358 | ID=Msa0121430-mRNA-1:three_prime_utr;Parent=Msa0121430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
