AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046820 MtrunA17_Chr6g0473061 97.701 87 2 0 1 87 1 87 5.09e-56 181
Msa0046820 MtrunA17_Chr3g0136481 97.701 87 2 0 1 87 1 87 5.65e-56 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046820 AT2G26270.1 54.255 94 33 2 1 92 1 86 1.21e-24 96.7
Msa0046820 AT3G43930.3 52.000 100 38 2 1 90 1 100 3.24e-23 90.9
Msa0046820 AT3G43930.1 52.000 100 38 2 1 90 1 100 4.16e-23 92.0
Msa0046820 AT3G43930.2 52.000 100 38 2 1 90 1 100 4.61e-23 91.7

Find 177 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATAGTTTGAAGAATTA+TGG 0.150732 1_1:-79245066 Msa0046820:three_prime_UTR
TACGGTTATCTATAGTATTT+TGG 0.194222 1_1:-79242284 Msa0046820:three_prime_UTR
TGTATTCACAGTCCCCATTT+TGG 0.213595 1_1:+79242516 None:intergenic
GAAAATTAAGAGAGGGTAAA+AGG 0.221597 1_1:+79246682 None:intergenic
GATGAGTATGCTTGATTTCA+TGG 0.230447 1_1:+79244965 None:intergenic
CTGATGCTTGATGACATTTC+AGG 0.260903 1_1:-79244105 Msa0046820:three_prime_UTR
CAGGGCAGTAAAAGTGAAAT+TGG 0.280733 1_1:-79243881 Msa0046820:three_prime_UTR
GATAGAGTCCAGAAGGTTAT+TGG 0.281598 1_1:+79243405 None:intergenic
TGCCAAACTAGCACCTTCTT+TGG 0.298759 1_1:+79244549 None:intergenic
CTTGAGTAGGGTGCCCAAAA+TGG 0.298928 1_1:-79242530 Msa0046820:three_prime_UTR
GAGAACAACCTTTCTGTTAG+AGG 0.306209 1_1:+79243232 None:intergenic
TATGCAGAACAAACCCAAAT+TGG 0.309654 1_1:+79246631 None:intergenic
TTACGAACCACTTGAACTTT+TGG 0.310539 1_1:-79242318 Msa0046820:three_prime_UTR
AAAAGTCCATGACGATCTTC+AGG 0.319631 1_1:-79243900 Msa0046820:three_prime_UTR
TTGTGTGAGAGAAGTAATTT+TGG 0.327368 1_1:-79245762 Msa0046820:three_prime_UTR
ACTGAAAGAGTCTGTGTAAA+TGG 0.327959 1_1:+79243348 None:intergenic
TGTTAGCATGTCTGTTGATT+TGG 0.329381 1_1:-79244142 Msa0046820:three_prime_UTR
ATAAAGTAGAAATACTGATA+TGG 0.331846 1_1:+79245737 None:intergenic
AACAAACCCAAATTGGAAAA+AGG 0.336046 1_1:+79246638 None:intergenic
CAATTCACAATTGACAAAAC+TGG 0.339488 1_1:-79245543 Msa0046820:three_prime_UTR
TTTATAGTTTGAAGAATTAT+GGG 0.341154 1_1:-79245065 Msa0046820:three_prime_UTR
GGAAGAGTATGGTGAGAAAA+TGG 0.345135 1_1:+79243107 None:intergenic
TTTAACATATAGCACAGTTT+TGG 0.346095 1_1:-79245380 Msa0046820:three_prime_UTR
CTCTATCTGTTGGTCAATAT+CGG 0.352911 1_1:-79243389 Msa0046820:three_prime_UTR
AAAATTCAAGATGATTTAGA+AGG 0.353960 1_1:+79245907 None:intergenic
TTGATTTCATGGATTCTTGC+AGG 0.362130 1_1:+79244976 None:intergenic
GATGCAGATTGGGGCTATAC+TGG 0.365924 1_1:+79245965 None:intergenic
GGTCTTGTTATATGTGTTAC+CGG 0.369177 1_1:-79246258 Msa0046820:CDS
ATCCAAAGAAGGTGCTAGTT+TGG 0.369729 1_1:-79244551 Msa0046820:three_prime_UTR
TTTAGTGGTGGTAACAGTTA+TGG 0.374078 1_1:-79246421 Msa0046820:exon
GATTACACCCAATAACCTTC+TGG 0.380114 1_1:-79243413 Msa0046820:three_prime_UTR
TTGAGTAGGGTGCCCAAAAT+GGG 0.388027 1_1:-79242529 Msa0046820:three_prime_UTR
TGCTGATGCTATTATTATAT+AGG 0.395336 1_1:+79245884 None:intergenic
TGCAGAGTCTAACAGAAGTT+TGG 0.395732 1_1:-79244914 Msa0046820:three_prime_UTR
GTACATTGAGGATGCAGATT+GGG 0.398670 1_1:+79245955 None:intergenic
TGCAATTCGGATGAAATGCC+TGG 0.401863 1_1:+79244856 None:intergenic
TTTGGCAGAAGCAAGGAATC+AGG 0.406989 1_1:-79246016 Msa0046820:intron
TTAGTGGTGGTAACAGTTAT+GGG 0.408245 1_1:-79246420 Msa0046820:exon
TCGATCAGTTTACTCAAGTA+AGG 0.418161 1_1:-79242787 Msa0046820:three_prime_UTR
GAAGAATTTCGAAGATTCTC+TGG 0.419860 1_1:-79244937 Msa0046820:three_prime_UTR
TGTCACACTGGGTTGGTTTG+TGG 0.422711 1_1:-79245303 Msa0046820:three_prime_UTR
ACATCCATTCAAAGATATCT+TGG 0.423871 1_1:-79244478 Msa0046820:three_prime_UTR
AAAATTAAGAGAGGGTAAAA+GGG 0.424229 1_1:+79246683 None:intergenic
AGTTTGGACTCAAGTTTGTC+TGG 0.430371 1_1:-79244898 Msa0046820:three_prime_UTR
AGTAAAGGACAATAAGAAAA+GGG 0.431926 1_1:+79246782 None:intergenic
GCATCCTCAATGTACTCATT+TGG 0.432536 1_1:-79245947 Msa0046820:CDS
TTGTGAATTGCAGAAAATAG+AGG 0.434508 1_1:+79245556 None:intergenic
GGCCTCTTTGTTGTCACACT+GGG 0.434913 1_1:-79245314 Msa0046820:three_prime_UTR
AAGTAAAGGACAATAAGAAA+AGG 0.436020 1_1:+79246781 None:intergenic
GAATCGCCACATCTATTTCA+AGG 0.441565 1_1:+79242838 None:intergenic
GGGACTGTGAATACAAGAAA+TGG 0.443737 1_1:-79242508 Msa0046820:three_prime_UTR
ATCCACACCTTTAGATAAAC+CGG 0.444295 1_1:+79246239 None:intergenic
AGAAGGTTATTGGGTGTAAT+CGG 0.444905 1_1:+79243415 None:intergenic
CTTCAAACTATAAAGTGATT+CGG 0.448581 1_1:+79245074 None:intergenic
AATGCCTGGATCAACGTAGA+TGG 0.449609 1_1:+79244870 None:intergenic
CCAGCAAAAGGAGCATTTGA+TGG 0.452352 1_1:+79246279 None:intergenic
TCCTCAATGTACTCATTTGG+TGG 0.452439 1_1:-79245944 Msa0046820:CDS
TGTGTTACCGGTTTATCTAA+AGG 0.452554 1_1:-79246246 Msa0046820:intron
CTTGAAGTCATGCACTATAC+AGG 0.453779 1_1:-79245205 Msa0046820:three_prime_UTR
ATAGAGTCCAGAAGGTTATT+GGG 0.457546 1_1:+79243406 None:intergenic
CTGAAATGTCATCAAGCATC+AGG 0.464163 1_1:+79244106 None:intergenic
ATCTCGGAAAACCGGTCCAC+AGG 0.464717 1_1:+79243085 None:intergenic
TTGGCAGACCAATGGTTTGT+TGG 0.465550 1_1:-79244532 Msa0046820:three_prime_UTR
ATGTGTATGAGTTATTACTT+AGG 0.468174 1_1:-79242662 Msa0046820:three_prime_UTR
TAAAGTAGAAATACTGATAT+GGG 0.475297 1_1:+79245738 None:intergenic
TGCCATCTGTTTCCACAGCA+TGG 0.475634 1_1:-79245430 Msa0046820:three_prime_UTR
TGCTCCATCTACGTTGATCC+AGG 0.475904 1_1:-79244874 Msa0046820:three_prime_UTR
TTACACCCCAAGTCTTCAAA+AGG 0.477167 1_1:-79242457 Msa0046820:three_prime_UTR
TGATGCAAAAGGGGATGAGA+AGG 0.477811 1_1:-79243287 Msa0046820:three_prime_UTR
CATCAGCATGATGCTGTAGT+AGG 0.481432 1_1:-79245869 Msa0046820:three_prime_UTR
GAAGACATGTAAAACCGTTA+TGG 0.482418 1_1:+79243035 None:intergenic
GAGTTATTACTTAGGGCATA+AGG 0.483600 1_1:-79242654 Msa0046820:three_prime_UTR
TCTTTGTTGTCACACTGGGT+TGG 0.484753 1_1:-79245310 Msa0046820:three_prime_UTR
AATATCACAAAAGCCGTGTC+AGG 0.485399 1_1:+79245180 None:intergenic
TGGGGATAACAATATGAAGT+TGG 0.486015 1_1:-79245046 Msa0046820:three_prime_UTR
TGATGCTTGATGACATTTCA+GGG 0.486927 1_1:-79244104 Msa0046820:three_prime_UTR
CCATGATCATGGTTCATAAG+AGG 0.487562 1_1:+79245461 None:intergenic
AATCAGAACTCTTCAACCAT+TGG 0.490906 1_1:-79246337 Msa0046820:CDS
TCAGTATTTCTACTTTATCT+CGG 0.491918 1_1:-79245732 Msa0046820:three_prime_UTR
TCAAGATGATTTAGAAGGAA+AGG 0.492055 1_1:+79245912 None:intergenic
AATTGCGGAGAGGATGAAAC+AGG 0.492134 1_1:+79246303 None:intergenic
CTGTTACATTAAAGATGTGT+TGG 0.492623 1_1:-79242565 Msa0046820:three_prime_UTR
TACACACCCAAGTCTTGAAA+AGG 0.493665 1_1:-79242415 Msa0046820:three_prime_UTR
GGACTGTGAATACAAGAAAT+GGG 0.494131 1_1:-79242507 Msa0046820:three_prime_UTR
GTTGAAGTTGCGAGTGGCAA+AGG 0.494441 1_1:-79246384 Msa0046820:CDS
CCGGTCCACAGGGAAGAGTA+TGG 0.500922 1_1:+79243096 None:intergenic
AAGGGCCGATCTCGGAAAAC+CGG 0.502602 1_1:+79243077 None:intergenic
TGTGTATGAGTTATTACTTA+GGG 0.502710 1_1:-79242661 Msa0046820:three_prime_UTR
TGGCCTCTTTGTTGTCACAC+TGG 0.503600 1_1:-79245315 Msa0046820:three_prime_UTR
TCGCCGTGGTCGTCGAATGC+AGG 0.505488 1_1:-79243807 Msa0046820:intron
CGAGTGGCAAAGGGTGTTCG+AGG 0.509530 1_1:-79246374 Msa0046820:CDS
AGGATGAAACAGGAGACATT+TGG 0.509792 1_1:+79246313 None:intergenic
AGTACATTGAGGATGCAGAT+TGG 0.510198 1_1:+79245954 None:intergenic
CCATACTCTTCCCTGTGGAC+CGG 0.511727 1_1:-79243096 Msa0046820:three_prime_UTR
GCAAGCAACAACCATGATCA+TGG 0.516567 1_1:+79245450 None:intergenic
ATGGAGGCTACAGAGAGATT+AGG 0.517779 1_1:-79245991 Msa0046820:CDS
GGAGCATTTGATGGCAATTG+CGG 0.518188 1_1:+79246288 None:intergenic
CTTCCCGGGTACACAAATGC+TGG 0.520659 1_1:-79245009 Msa0046820:three_prime_UTR
CATATAACAAGACCAGCAAA+AGG 0.535472 1_1:+79246267 None:intergenic
GCTGAAACTGCATCCAAAGA+AGG 0.536257 1_1:-79244562 Msa0046820:three_prime_UTR
ACAGGAGACATTTGGTCCAA+TGG 0.538148 1_1:+79246321 None:intergenic
TTGAAGTTGCGAGTGGCAAA+GGG 0.545784 1_1:-79246383 Msa0046820:CDS
ATTTCCAGCATTTGTGTACC+CGG 0.546283 1_1:+79245005 None:intergenic
TCTTGAGGAAGGGCCGATCT+CGG 0.547315 1_1:+79243069 None:intergenic
AAAGTCCATGACGATCTTCA+GGG 0.549038 1_1:-79243899 Msa0046820:three_prime_UTR
GGAGTGTGCAGAAGAAGTAA+AGG 0.549629 1_1:+79246767 None:intergenic
GTTGATTTGGCAAGACAAGT+TGG 0.550833 1_1:-79244129 Msa0046820:three_prime_UTR
AAGATTTCATGATGGTACTA+CGG 0.556839 1_1:+79245401 None:intergenic
GTTGGTTTGTGGATAGTGTC+AGG 0.558130 1_1:-79245292 Msa0046820:three_prime_UTR
ATATACTTACATGAACCCAT+TGG 0.558502 1_1:-79245832 Msa0046820:three_prime_UTR
GTGCTAGTTTGGCAGACCAA+TGG 0.559716 1_1:-79244540 Msa0046820:three_prime_UTR
GCCACATCTATTTCAAGGCT+AGG 0.562789 1_1:+79242843 None:intergenic
GTTAGTCATGTAGTCACTGA+AGG 0.562909 1_1:-79244502 Msa0046820:three_prime_UTR
TTTGAGCATGCAGTAAAGCA+TGG 0.564693 1_1:-79245347 Msa0046820:three_prime_UTR
GTAACAGTTATGGGTGGTGA+GGG 0.565849 1_1:-79246411 Msa0046820:exon
GTGGAACATGTCACTTGAGT+AGG 0.567006 1_1:-79242543 Msa0046820:three_prime_UTR
CACTATACAGGAACCTGACA+CGG 0.569964 1_1:-79245193 Msa0046820:three_prime_UTR
CAGATTCAAGACATGCGGAC+AGG 0.572808 1_1:-79242812 Msa0046820:three_prime_UTR
GTATCCAAGATATCTTTGAA+TGG 0.574153 1_1:+79244474 None:intergenic
GTAAGGAAACAGCGGAGCGT+GGG 0.574806 1_1:-79242770 Msa0046820:three_prime_UTR
ACCTTCTGGACTCTATCTGT+TGG 0.575317 1_1:-79243399 Msa0046820:three_prime_UTR
AGTAAGGAAACAGCGGAGCG+TGG 0.576929 1_1:-79242771 Msa0046820:three_prime_UTR
GCTTGATGACATTTCAGGGA+AGG 0.577574 1_1:-79244100 Msa0046820:intron
CAAATTGGGAAAATTAAGAG+AGG 0.577775 1_1:+79246674 None:intergenic
CAGCATGATGCTGTAGTAGG+AGG 0.577914 1_1:-79245866 Msa0046820:three_prime_UTR
TTCATCCGAATTGCAAAACA+AGG 0.577926 1_1:-79244848 Msa0046820:intron
AAATTAAGAGAGGGTAAAAG+GGG 0.585895 1_1:+79246684 None:intergenic
CATTACAGCCAACAAACCAT+TGG 0.587337 1_1:+79244524 None:intergenic
TACATTGAGGATGCAGATTG+GGG 0.589195 1_1:+79245956 None:intergenic
TAGAAGCACTCACTGTAATG+AGG 0.589590 1_1:+79244443 None:intergenic
TACTGCCCTGAAGATCGTCA+TGG 0.589825 1_1:+79243894 None:intergenic
AATAAGATATTGATGAGCAC+AGG 0.593011 1_1:+79245501 None:intergenic
TACAAAATATTGTGAAGTAG+CGG 0.596986 1_1:-79245615 Msa0046820:three_prime_UTR
GTGGATTCTCAAAACAGCTA+AGG 0.597139 1_1:-79244184 Msa0046820:three_prime_UTR
CCTTTCTGTTAGAGGACGTG+TGG 0.598952 1_1:+79243240 None:intergenic
AAAAGCTTCTCTTCATCACC+AGG 0.600801 1_1:+79246499 None:intergenic
TTACATTAAAGATGTGTTGG+TGG 0.602391 1_1:-79242562 Msa0046820:three_prime_UTR
TCTCGGAAAACCGGTCCACA+GGG 0.604616 1_1:+79243086 None:intergenic
TTGGGTGTAATCGGACGGAT+CGG 0.604793 1_1:+79243424 None:intergenic
GGTAACAGTTATGGGTGGTG+AGG 0.606272 1_1:-79246412 Msa0046820:exon
CCTCTTATGAACCATGATCA+TGG 0.608938 1_1:-79245461 Msa0046820:three_prime_UTR
ACCAACAGATAGAGTCCAGA+AGG 0.609079 1_1:+79243398 None:intergenic
CCACACGTCCTCTAACAGAA+AGG 0.609978 1_1:-79243240 Msa0046820:intron
GAAATGTTGAAGCGCGTGAG+TGG 0.613290 1_1:-79242699 Msa0046820:three_prime_UTR
ATATGTTAAAGATTTCATGA+TGG 0.613863 1_1:+79245393 None:intergenic
TGGAACATGTCACTTGAGTA+GGG 0.616343 1_1:-79242542 Msa0046820:three_prime_UTR
AGTGTATCGCAGAACAATAG+TGG 0.616508 1_1:+79245648 None:intergenic
ATCCATGCTGTGGAAACAGA+TGG 0.617621 1_1:+79245428 None:intergenic
CTACGGAAATATCCATGCTG+TGG 0.623393 1_1:+79245418 None:intergenic
AACCCAGTGTGACAACAAAG+AGG 0.624024 1_1:+79245312 None:intergenic
CTAAGGAGAAACAAGTGCAA+AGG 0.624728 1_1:-79244167 Msa0046820:three_prime_UTR
ACATAACTTGAAATTCAAAG+AGG 0.625524 1_1:+79246548 None:intergenic
GACTGTGAATACAAGAAATG+GGG 0.626820 1_1:-79242506 Msa0046820:three_prime_UTR
TTATAGTTTGAAGAATTATG+GGG 0.627002 1_1:-79245064 Msa0046820:three_prime_UTR
GGTTATTGGGTGTAATCGGA+CGG 0.627487 1_1:+79243419 None:intergenic
TGAGTAGGGTGCCCAAAATG+GGG 0.631792 1_1:-79242528 Msa0046820:three_prime_UTR
GCCTAGCCTTGAAATAGATG+TGG 0.639029 1_1:-79242844 Msa0046820:three_prime_UTR
TTAGTCATGTAGTCACTGAA+GGG 0.640621 1_1:-79244501 Msa0046820:three_prime_UTR
GAATATAGTGCAGTGGTGTG+AGG 0.641520 1_1:+79246814 None:intergenic
AGAAGCAAGGAATCAGGTCA+TGG 0.644925 1_1:-79246010 Msa0046820:CDS
GAGGCTACAGAGAGATTAGG+TGG 0.645575 1_1:-79245988 Msa0046820:CDS
TCTCACCATACTCTTCCCTG+TGG 0.646627 1_1:-79243101 Msa0046820:three_prime_UTR
ACCACCAAATGAGTACATTG+AGG 0.647498 1_1:+79245943 None:intergenic
TTTCCAGCATTTGTGTACCC+GGG 0.655427 1_1:+79245006 None:intergenic
AAGTAATAACTCATACACAT+TGG 0.664276 1_1:+79242665 None:intergenic
AAATTGGGAAAATTAAGAGA+GGG 0.670526 1_1:+79246675 None:intergenic
TCATACAGATTCAAGACATG+CGG 0.674214 1_1:-79242817 Msa0046820:three_prime_UTR
ATTTGATGGCAATTGCGGAG+AGG 0.674786 1_1:+79246293 None:intergenic
TGACCTGCATTCGACGACCA+CGG 0.680999 1_1:+79243804 None:intergenic
GCTATAGCACTGCTGCACAG+CGG 0.683726 1_1:-79245591 Msa0046820:three_prime_UTR
ATGATATTTCTCAGCCAGTG+TGG 0.684887 1_1:-79244203 Msa0046820:intron
GGTAGAGTTGAAGTTGCGAG+TGG 0.698549 1_1:-79246390 Msa0046820:CDS
AGCAAGGAATCAGGTCATGG+AGG 0.703167 1_1:-79246007 Msa0046820:CDS
ACTGTGAATACAAGAAATGG+GGG 0.709309 1_1:-79242505 Msa0046820:three_prime_UTR
GTGGTGGTAACAGTTATGGG+TGG 0.723421 1_1:-79246417 Msa0046820:exon
AATGGTGTCAGAAGTCGCCG+TGG 0.728899 1_1:-79243821 Msa0046820:three_prime_UTR
TTACTCAAGTAAGGAAACAG+CGG 0.729643 1_1:-79242778 Msa0046820:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGCTTTTTTTTTTTTTTAA+CGG - chr1_1:79244825-79244844 Msa0046820:intron 10.0%
!! TTTATAGTTTGAAGAATTAT+GGG - chr1_1:79244086-79244105 Msa0046820:intron 15.0%
!! TCCTATTTATAAGAAAAATT+TGG - chr1_1:79244353-79244372 Msa0046820:intron 15.0%
!! CCTATTTATAAGAAAAATTT+GGG - chr1_1:79244354-79244373 Msa0046820:intron 15.0%
!!! AAACATTTAGAATAATCTTT+TGG - chr1_1:79244753-79244772 Msa0046820:intron 15.0%
!! TATTATAACAAATGCTAATA+AGG + chr1_1:79246193-79246212 None:intergenic 15.0%
!!! TATTAGCATTTGTTATAATA+CGG - chr1_1:79246193-79246212 Msa0046820:intron 15.0%
!!! TGAATTTTTAGGATGAAAAA+TGG + chr1_1:79242408-79242427 None:intergenic 20.0%
!!! GTGAAATTTTTGAACAAATT+GGG + chr1_1:79242494-79242513 None:intergenic 20.0%
!! GTTAATGTTATTCTTTGAAT+TGG - chr1_1:79243109-79243128 Msa0046820:three_prime_UTR 20.0%
!! AAAATTCAAGATGATTTAGA+AGG + chr1_1:79243247-79243266 None:intergenic 20.0%
!!! AATTGTTTGCTTAACTTTTT+TGG - chr1_1:79243366-79243385 Msa0046820:three_prime_UTR 20.0%
!! TAAAGTAGAAATACTGATAT+GGG + chr1_1:79243416-79243435 None:intergenic 20.0%
!! ATAAAGTAGAAATACTGATA+TGG + chr1_1:79243417-79243436 None:intergenic 20.0%
!! ATATGTTAAAGATTTCATGA+TGG + chr1_1:79243761-79243780 None:intergenic 20.0%
!! CTTTATAGTTTGAAGAATTA+TGG - chr1_1:79244085-79244104 Msa0046820:intron 20.0%
!! TTATAGTTTGAAGAATTATG+GGG - chr1_1:79244087-79244106 Msa0046820:intron 20.0%
!!! ATTTTTCTTATAAATAGGAC+CGG + chr1_1:79244352-79244371 None:intergenic 20.0%
!!! CCCAAATTTTTCTTATAAAT+AGG + chr1_1:79244357-79244376 None:intergenic 20.0%
!! TCAACAAAAGTTAATGAATT+TGG + chr1_1:79244416-79244435 None:intergenic 20.0%
!!! AATATCTAGACATTTTGTAA+TGG - chr1_1:79244478-79244497 Msa0046820:three_prime_UTR 20.0%
!! ATTAATATTATGCGATAAGT+AGG - chr1_1:79244882-79244901 Msa0046820:three_prime_UTR 20.0%
!! TCATTGTGATGTAAATAATA+CGG + chr1_1:79244914-79244933 None:intergenic 20.0%
!! CGAAATTAAATATTCCAATA+TGG + chr1_1:79245590-79245609 None:intergenic 20.0%
!!! TTTTGCATCAAAAAATATTG+AGG + chr1_1:79245854-79245873 None:intergenic 20.0%
!!! TCAATATTTTTTGATGCAAA+AGG - chr1_1:79245853-79245872 Msa0046820:three_prime_UTR 20.0%
!!! CAATATTTTTTGATGCAAAA+GGG - chr1_1:79245854-79245873 Msa0046820:three_prime_UTR 20.0%
!!! AATATTTTTTGATGCAAAAG+GGG - chr1_1:79245855-79245874 Msa0046820:three_prime_UTR 20.0%
!!! TATGGCTTAATATTTCATTT+TGG - chr1_1:79245984-79246003 Msa0046820:CDS 20.0%
!!! ATGGTTTTTAAATATCAACT+CGG + chr1_1:79246028-79246047 None:intergenic 20.0%
!!! TTGAAACGAATTGAATTTTT+GGG - chr1_1:79246413-79246432 Msa0046820:exon 20.0%
!!! TTTTTTTGAATATAGTGCAG+TGG + chr1_1:79242347-79242366 None:intergenic 25.0%
! AGTAAAGGACAATAAGAAAA+GGG + chr1_1:79242372-79242391 None:intergenic 25.0%
! AAGTAAAGGACAATAAGAAA+AGG + chr1_1:79242373-79242392 None:intergenic 25.0%
!! GAGACAAAGAATGAATTTTT+AGG + chr1_1:79242419-79242438 None:intergenic 25.0%
! AAAATTAAGAGAGGGTAAAA+GGG + chr1_1:79242471-79242490 None:intergenic 25.0%
! AAATTGGGAAAATTAAGAGA+GGG + chr1_1:79242479-79242498 None:intergenic 25.0%
!! GGTGAAATTTTTGAACAAAT+TGG + chr1_1:79242495-79242514 None:intergenic 25.0%
!! AATTTCACCTTTTTCCAATT+TGG - chr1_1:79242506-79242525 Msa0046820:three_prime_UTR 25.0%
!! ATTTCACCTTTTTCCAATTT+GGG - chr1_1:79242507-79242526 Msa0046820:three_prime_UTR 25.0%
!!! AATTGTTTTTTTGGTCAATG+AGG - chr1_1:79242570-79242589 Msa0046820:three_prime_UTR 25.0%
! ACATAACTTGAAATTCAAAG+AGG + chr1_1:79242606-79242625 None:intergenic 25.0%
!! TATATAGATTTTCAATTGCC+TGG - chr1_1:79242634-79242653 Msa0046820:three_prime_UTR 25.0%
! TGCTGATGCTATTATTATAT+AGG + chr1_1:79243270-79243289 None:intergenic 25.0%
!!! TAACAGAACTTTTTTCCAAT+GGG + chr1_1:79243337-79243356 None:intergenic 25.0%
!!! TTAACAGAACTTTTTTCCAA+TGG + chr1_1:79243338-79243357 None:intergenic 25.0%
!! AAGTTAAGCAAACAATTTTC+AGG + chr1_1:79243363-79243382 None:intergenic 25.0%
!! TCAGTATTTCTACTTTATCT+CGG - chr1_1:79243419-79243438 Msa0046820:three_prime_UTR 25.0%
!!! ATCTCGGTATTTTTAAATAG+TGG - chr1_1:79243435-79243454 Msa0046820:three_prime_UTR 25.0%
!! TTTTTAAATAGTGGCTATAG+TGG - chr1_1:79243444-79243463 Msa0046820:intron 25.0%
! TACAAAATATTGTGAAGTAG+CGG - chr1_1:79243536-79243555 Msa0046820:intron 25.0%
!! TTTAACATATAGCACAGTTT+TGG - chr1_1:79243771-79243790 Msa0046820:intron 25.0%
! CTTCAAACTATAAAGTGATT+CGG + chr1_1:79244080-79244099 None:intergenic 25.0%
!!! ATTTACCTTGTTTTGCAATT+CGG + chr1_1:79244311-79244330 None:intergenic 25.0%
! CTCAAATTTCTCTTGTAAAT+AGG - chr1_1:79244436-79244455 Msa0046820:intron 25.0%
!!! CATTTAGAATAATCTTTTGG+AGG - chr1_1:79244756-79244775 Msa0046820:intron 25.0%
! TGATGTAAATAATACGGTAT+AGG + chr1_1:79244908-79244927 None:intergenic 25.0%
! GTATTTACAATTCCAAGAAA+AGG + chr1_1:79245107-79245126 None:intergenic 25.0%
! AAAATTAGCGAGTTTAATCT+TGG + chr1_1:79245129-79245148 None:intergenic 25.0%
! TCACAATTTCAAGAAAATGA+GGG + chr1_1:79245194-79245213 None:intergenic 25.0%
! ATCACAATTTCAAGAAAATG+AGG + chr1_1:79245195-79245214 None:intergenic 25.0%
! ATTGTAAATTCAGCGAAAAA+TGG - chr1_1:79245312-79245331 Msa0046820:three_prime_UTR 25.0%
! AAATCACATGTATAGATTAG+TGG + chr1_1:79245490-79245509 None:intergenic 25.0%
! AAAGATAACAAACTAAAGAC+AGG + chr1_1:79245627-79245646 None:intergenic 25.0%
!! ATTGAGGTATGATTTTCATT+AGG + chr1_1:79245838-79245857 None:intergenic 25.0%
! TTAAGCCATATTTACTACAT+CGG + chr1_1:79245974-79245993 None:intergenic 25.0%
!! GTTGAAACGAATTGAATTTT+TGG - chr1_1:79246412-79246431 Msa0046820:exon 25.0%
! AAGTAATAACTCATACACAT+TGG + chr1_1:79246489-79246508 None:intergenic 25.0%
! ATGTGTATGAGTTATTACTT+AGG - chr1_1:79246489-79246508 Msa0046820:five_prime_UTR 25.0%
! TGTGTATGAGTTATTACTTA+GGG - chr1_1:79246490-79246509 Msa0046820:five_prime_UTR 25.0%
!!! TTAAATCCTTTTCAAGACTT+GGG + chr1_1:79246745-79246764 None:intergenic 25.0%
!!! ATTAAATCCTTTTCAAGACT+TGG + chr1_1:79246746-79246765 None:intergenic 25.0%
!!! CTTTTGGTTTTTCATTGTTA+CGG - chr1_1:79246849-79246868 Msa0046820:five_prime_UTR 25.0%
! TTTTGTGTGTGATTCCATTT+TGG + chr1_1:79242288-79242307 None:intergenic 30.0%
AAATTAAGAGAGGGTAAAAG+GGG + chr1_1:79242470-79242489 None:intergenic 30.0%
GAAAATTAAGAGAGGGTAAA+AGG + chr1_1:79242472-79242491 None:intergenic 30.0%
CAAATTGGGAAAATTAAGAG+AGG + chr1_1:79242480-79242499 None:intergenic 30.0%
AACAAACCCAAATTGGAAAA+AGG + chr1_1:79242516-79242535 None:intergenic 30.0%
TCATGTCTTCTATGATTGAT+TGG - chr1_1:79242935-79242954 Msa0046820:intron 30.0%
CAATGACTTCAAGTAAGATA+AGG + chr1_1:79242976-79242995 None:intergenic 30.0%
CTTATCTTACTTGAAGTCAT+TGG - chr1_1:79242974-79242993 Msa0046820:intron 30.0%
TCATATACTTGAGCTTGAAA+AGG - chr1_1:79243029-79243048 Msa0046820:three_prime_UTR 30.0%
! TATTCTTTGAATTGGCGTTT+TGG - chr1_1:79243117-79243136 Msa0046820:three_prime_UTR 30.0%
TCAAGATGATTTAGAAGGAA+AGG + chr1_1:79243242-79243261 None:intergenic 30.0%
ATATACTTACATGAACCCAT+TGG - chr1_1:79243319-79243338 Msa0046820:three_prime_UTR 30.0%
! TTGTGTGAGAGAAGTAATTT+TGG - chr1_1:79243389-79243408 Msa0046820:three_prime_UTR 30.0%
TTGTGAATTGCAGAAAATAG+AGG + chr1_1:79243598-79243617 None:intergenic 30.0%
CAATTCACAATTGACAAAAC+TGG - chr1_1:79243608-79243627 Msa0046820:intron 30.0%
AATAAGATATTGATGAGCAC+AGG + chr1_1:79243653-79243672 None:intergenic 30.0%
AAGATTTCATGATGGTACTA+CGG + chr1_1:79243753-79243772 None:intergenic 30.0%
GTAAAGCATGGAACAAAAAA+TGG - chr1_1:79243816-79243835 Msa0046820:three_prime_UTR 30.0%
! TCATTTTGTCTACTACAGTA+AGG - chr1_1:79244050-79244069 Msa0046820:intron 30.0%
ATTTCTCTTGTAAATAGGAC+CGG - chr1_1:79244441-79244460 Msa0046820:intron 30.0%
ACATCCATTCAAAGATATCT+TGG - chr1_1:79244673-79244692 Msa0046820:intron 30.0%
GTATCCAAGATATCTTTGAA+TGG + chr1_1:79244680-79244699 None:intergenic 30.0%
AAAAAAGCAAAACAAGTGTG+AGG + chr1_1:79244815-79244834 None:intergenic 30.0%
TTACAATTCCAAGAAAAGGA+GGG + chr1_1:79245103-79245122 None:intergenic 30.0%
TTTACAATTCCAAGAAAAGG+AGG + chr1_1:79245104-79245123 None:intergenic 30.0%
TTCAACAAACCACTCAAATT+TGG - chr1_1:79245147-79245166 Msa0046820:three_prime_UTR 30.0%
! TTTTGCAAACCAAATTTGAG+TGG + chr1_1:79245159-79245178 None:intergenic 30.0%
CTGAATTTCATTGACATAAC+AGG - chr1_1:79245215-79245234 Msa0046820:three_prime_UTR 30.0%
AGCAAAATCAACAAACTTAG+AGG + chr1_1:79245464-79245483 None:intergenic 30.0%
TCTATACATGTGATTTGAGT+TGG - chr1_1:79245494-79245513 Msa0046820:three_prime_UTR 30.0%
!! TGTGATTTGAGTTGGTAATT+TGG - chr1_1:79245502-79245521 Msa0046820:three_prime_UTR 30.0%
! GTTCCTCATTCTTAACATTT+TGG - chr1_1:79245547-79245566 Msa0046820:three_prime_UTR 30.0%
AGACCAAAATGTTAAGAATG+AGG + chr1_1:79245553-79245572 None:intergenic 30.0%
!! AACATTTTGGTCTATGAAAC+TGG - chr1_1:79245560-79245579 Msa0046820:three_prime_UTR 30.0%
ATGAAACTGGATTTCCATAT+TGG - chr1_1:79245573-79245592 Msa0046820:three_prime_UTR 30.0%
! GGAATATTTAATTTCGAGCA+CGG - chr1_1:79245594-79245613 Msa0046820:three_prime_UTR 30.0%
! TTTTCCCGATGTAGTAAATA+TGG - chr1_1:79245966-79245985 Msa0046820:CDS 30.0%
TAAGCCATATTTACTACATC+GGG + chr1_1:79245973-79245992 None:intergenic 30.0%
! TCATATCCATGCATTTTATC+AGG - chr1_1:79246149-79246168 Msa0046820:intron 30.0%
! CTTTTACCTGATAAAATGCA+TGG + chr1_1:79246158-79246177 None:intergenic 30.0%
! CATGCATTTTATCAGGTAAA+AGG - chr1_1:79246156-79246175 Msa0046820:intron 30.0%
CTGTTACATTAAAGATGTGT+TGG - chr1_1:79246586-79246605 Msa0046820:five_prime_UTR 30.0%
TTACATTAAAGATGTGTTGG+TGG - chr1_1:79246589-79246608 Msa0046820:five_prime_UTR 30.0%
!! AGATAACCTTTTGAAGACTT+GGG + chr1_1:79246703-79246722 None:intergenic 30.0%
!! TAGATAACCTTTTGAAGACT+TGG + chr1_1:79246704-79246723 None:intergenic 30.0%
TGAAAAACCAAAAGTTCAAG+TGG + chr1_1:79246843-79246862 None:intergenic 30.0%
GACAAAAGGGGTTATAGAAT+TGG + chr1_1:79242441-79242460 None:intergenic 35.0%
TATGCAGAACAAACCCAAAT+TGG + chr1_1:79242523-79242542 None:intergenic 35.0%
!! TGTGTTGTTCACTGTTTTAG+TGG - chr1_1:79242715-79242734 Msa0046820:three_prime_UTR 35.0%
TTTAGTGGTGGTAACAGTTA+TGG - chr1_1:79242730-79242749 Msa0046820:three_prime_UTR 35.0%
TTAGTGGTGGTAACAGTTAT+GGG - chr1_1:79242731-79242750 Msa0046820:three_prime_UTR 35.0%
AATCAGAACTCTTCAACCAT+TGG - chr1_1:79242814-79242833 Msa0046820:three_prime_UTR 35.0%
CATATAACAAGACCAGCAAA+AGG + chr1_1:79242887-79242906 None:intergenic 35.0%
!! GGTCTTGTTATATGTGTTAC+CGG - chr1_1:79242893-79242912 Msa0046820:intron 35.0%
!! TGTGTTACCGGTTTATCTAA+AGG - chr1_1:79242905-79242924 Msa0046820:intron 35.0%
ATCCACACCTTTAGATAAAC+CGG + chr1_1:79242915-79242934 None:intergenic 35.0%
!! AACATATAGCACAGTTTTGG+CGG - chr1_1:79243774-79243793 Msa0046820:intron 35.0%
TGGGGATAACAATATGAAGT+TGG - chr1_1:79244105-79244124 Msa0046820:three_prime_UTR 35.0%
TTGATTTCATGGATTCTTGC+AGG + chr1_1:79244178-79244197 None:intergenic 35.0%
GATGAGTATGCTTGATTTCA+TGG + chr1_1:79244189-79244208 None:intergenic 35.0%
GAAGAATTTCGAAGATTCTC+TGG - chr1_1:79244214-79244233 Msa0046820:intron 35.0%
TTCATCCGAATTGCAAAACA+AGG - chr1_1:79244303-79244322 Msa0046820:intron 35.0%
TTCTTATAAATAGGACCGGA+GGG + chr1_1:79244348-79244367 None:intergenic 35.0%
TTTCTTATAAATAGGACCGG+AGG + chr1_1:79244349-79244368 None:intergenic 35.0%
ATATTTATTGCTACTCCCTC+CGG + chr1_1:79244463-79244482 None:intergenic 35.0%
AGATGCTTTACATGTTCGAT+AGG - chr1_1:79244564-79244583 Msa0046820:three_prime_UTR 35.0%
TTAGTCATGTAGTCACTGAA+GGG - chr1_1:79244650-79244669 Msa0046820:intron 35.0%
! TGTTAGCATGTCTGTTGATT+TGG - chr1_1:79245009-79245028 Msa0046820:three_prime_UTR 35.0%
! TGATGCTTGATGACATTTCA+GGG - chr1_1:79245047-79245066 Msa0046820:three_prime_UTR 35.0%
! TTTTGTCTTTTCAGTGGAGT+TGG - chr1_1:79245392-79245411 Msa0046820:three_prime_UTR 35.0%
!! CTCTAAGACACACAATTACA+TGG + chr1_1:79245428-79245447 None:intergenic 35.0%
CATGTAATTGTGTGTCTTAG+AGG - chr1_1:79245426-79245445 Msa0046820:three_prime_UTR 35.0%
GATAACAAACTAAAGACAGG+TGG + chr1_1:79245624-79245643 None:intergenic 35.0%
AGAAGGTTATTGGGTGTAAT+CGG + chr1_1:79245739-79245758 None:intergenic 35.0%
ATAGAGTCCAGAAGGTTATT+GGG + chr1_1:79245748-79245767 None:intergenic 35.0%
CTCTATCTGTTGGTCAATAT+CGG - chr1_1:79245762-79245781 Msa0046820:three_prime_UTR 35.0%
ACTGAAAGAGTCTGTGTAAA+TGG + chr1_1:79245806-79245825 None:intergenic 35.0%
GAAAGGTTGTTCTCAATTTG+TGG - chr1_1:79245928-79245947 Msa0046820:CDS 35.0%
TGAAAAACGTTCTTGAGGAA+GGG + chr1_1:79246095-79246114 None:intergenic 35.0%
!! AGAACGTTTTTCAGCCATAA+CGG - chr1_1:79246102-79246121 Msa0046820:intron 35.0%
GAAGACATGTAAAACCGTTA+TGG + chr1_1:79246119-79246138 None:intergenic 35.0%
! TAACGGTTTTACATGTCTTC+AGG - chr1_1:79246119-79246138 Msa0046820:intron 35.0%
! TTTTACATGTCTTCAGGTGT+TGG - chr1_1:79246125-79246144 Msa0046820:intron 35.0%
TCATACAGATTCAAGACATG+CGG - chr1_1:79246334-79246353 Msa0046820:CDS 35.0%
TCGATCAGTTTACTCAAGTA+AGG - chr1_1:79246364-79246383 Msa0046820:CDS 35.0%
TTACTCAAGTAAGGAAACAG+CGG - chr1_1:79246373-79246392 Msa0046820:CDS 35.0%
GAGTTATTACTTAGGGCATA+AGG - chr1_1:79246497-79246516 Msa0046820:five_prime_UTR 35.0%
GGACTGTGAATACAAGAAAT+GGG - chr1_1:79246644-79246663 Msa0046820:five_prime_UTR 35.0%
GACTGTGAATACAAGAAATG+GGG - chr1_1:79246645-79246664 Msa0046820:five_prime_UTR 35.0%
ACTGTGAATACAAGAAATGG+GGG - chr1_1:79246646-79246665 Msa0046820:five_prime_UTR 35.0%
!! GATAACCTTTTGAAGACTTG+GGG + chr1_1:79246702-79246721 None:intergenic 35.0%
! TTACGAACCACTTGAACTTT+TGG - chr1_1:79246833-79246852 Msa0046820:five_prime_UTR 35.0%
AAAGGGGAATCTGGACAAAA+GGG + chr1_1:79242454-79242473 None:intergenic 40.0%
AAAAGGGGAATCTGGACAAA+AGG + chr1_1:79242455-79242474 None:intergenic 40.0%
AAAAGCTTCTCTTCATCACC+AGG + chr1_1:79242655-79242674 None:intergenic 40.0%
!!! GTTGTTCACTGTTTTAGTGG+TGG - chr1_1:79242718-79242737 Msa0046820:three_prime_UTR 40.0%
AGGATGAAACAGGAGACATT+TGG + chr1_1:79242841-79242860 None:intergenic 40.0%
!! TACCGGTTTATCTAAAGGTG+TGG - chr1_1:79242910-79242929 Msa0046820:intron 40.0%
TACATTGAGGATGCAGATTG+GGG + chr1_1:79243198-79243217 None:intergenic 40.0%
GTACATTGAGGATGCAGATT+GGG + chr1_1:79243199-79243218 None:intergenic 40.0%
AGTACATTGAGGATGCAGAT+TGG + chr1_1:79243200-79243219 None:intergenic 40.0%
GCATCCTCAATGTACTCATT+TGG - chr1_1:79243204-79243223 Msa0046820:intron 40.0%
TCCTCAATGTACTCATTTGG+TGG - chr1_1:79243207-79243226 Msa0046820:intron 40.0%
ACCACCAAATGAGTACATTG+AGG + chr1_1:79243211-79243230 None:intergenic 40.0%
AGTGTATCGCAGAACAATAG+TGG + chr1_1:79243506-79243525 None:intergenic 40.0%
CCATGATCATGGTTCATAAG+AGG + chr1_1:79243693-79243712 None:intergenic 40.0%
CCTCTTATGAACCATGATCA+TGG - chr1_1:79243690-79243709 Msa0046820:intron 40.0%
TTTGAGCATGCAGTAAAGCA+TGG - chr1_1:79243804-79243823 Msa0046820:intron 40.0%
GTGGATAGTGTCAGGAAAAA+TGG - chr1_1:79243867-79243886 Msa0046820:three_prime_UTR 40.0%
CTTGAAGTCATGCACTATAC+AGG - chr1_1:79243946-79243965 Msa0046820:intron 40.0%
AATATCACAAAAGCCGTGTC+AGG + chr1_1:79243974-79243993 None:intergenic 40.0%
! GATGATTTTAGACTGCTTCC+CGG - chr1_1:79244127-79244146 Msa0046820:three_prime_UTR 40.0%
! ATGATTTTAGACTGCTTCCC+GGG - chr1_1:79244128-79244147 Msa0046820:three_prime_UTR 40.0%
ATTTCCAGCATTTGTGTACC+CGG + chr1_1:79244149-79244168 None:intergenic 40.0%
TGCAGAGTCTAACAGAAGTT+TGG - chr1_1:79244237-79244256 Msa0046820:intron 40.0%
AGTTTGGACTCAAGTTTGTC+TGG - chr1_1:79244253-79244272 Msa0046820:intron 40.0%
TTTATGCGATATACTCCCTC+CGG - chr1_1:79244330-79244349 Msa0046820:intron 40.0%
CAGTTTCCTCTGTTTCAGTT+AGG - chr1_1:79244504-79244523 Msa0046820:three_prime_UTR 40.0%
!! ATCCAAAGAAGGTGCTAGTT+TGG - chr1_1:79244600-79244619 Msa0046820:intron 40.0%
CATTACAGCCAACAAACCAT+TGG + chr1_1:79244630-79244649 None:intergenic 40.0%
GTTAGTCATGTAGTCACTGA+AGG - chr1_1:79244649-79244668 Msa0046820:intron 40.0%
!! TAGAAGCACTCACTGTAATG+AGG + chr1_1:79244711-79244730 None:intergenic 40.0%
TGTCTTCCAGAAGATGTACA+GGG + chr1_1:79244852-79244871 None:intergenic 40.0%
ATGTCTTCCAGAAGATGTAC+AGG + chr1_1:79244853-79244872 None:intergenic 40.0%
ATGATATTTCTCAGCCAGTG+TGG - chr1_1:79244948-79244967 Msa0046820:three_prime_UTR 40.0%
GTGGATTCTCAAAACAGCTA+AGG - chr1_1:79244967-79244986 Msa0046820:three_prime_UTR 40.0%
CTAAGGAGAAACAAGTGCAA+AGG - chr1_1:79244984-79245003 Msa0046820:three_prime_UTR 40.0%
!! GTTGATTTGGCAAGACAAGT+TGG - chr1_1:79245022-79245041 Msa0046820:three_prime_UTR 40.0%
CTGAAATGTCATCAAGCATC+AGG + chr1_1:79245048-79245067 None:intergenic 40.0%
! CTGATGCTTGATGACATTTC+AGG - chr1_1:79245046-79245065 Msa0046820:three_prime_UTR 40.0%
CAAGAAAAGGAGGGAAATCT+AGG + chr1_1:79245094-79245113 None:intergenic 40.0%
! CTAGATTTCCCTCCTTTTCT+TGG - chr1_1:79245092-79245111 Msa0046820:three_prime_UTR 40.0%
CAAGAAAATGAGGGAAGTCT+AGG + chr1_1:79245185-79245204 None:intergenic 40.0%
AAAAGTCCATGACGATCTTC+AGG - chr1_1:79245251-79245270 Msa0046820:three_prime_UTR 40.0%
AAAGTCCATGACGATCTTCA+GGG - chr1_1:79245252-79245271 Msa0046820:three_prime_UTR 40.0%
CAGGGCAGTAAAAGTGAAAT+TGG - chr1_1:79245270-79245289 Msa0046820:three_prime_UTR 40.0%
CACTGAAAAGACAAAAGTGG+AGG + chr1_1:79245388-79245407 None:intergenic 40.0%
!! CTCCACTTTTGTCTTTTCAG+TGG - chr1_1:79245386-79245405 Msa0046820:three_prime_UTR 40.0%
CTCCACTGAAAAGACAAAAG+TGG + chr1_1:79245391-79245410 None:intergenic 40.0%
GATTACACCCAATAACCTTC+TGG - chr1_1:79245738-79245757 Msa0046820:three_prime_UTR 40.0%
GATAGAGTCCAGAAGGTTAT+TGG + chr1_1:79245749-79245768 None:intergenic 40.0%
GAGAACAACCTTTCTGTTAG+AGG + chr1_1:79245922-79245941 None:intergenic 40.0%
TTCTCAATTTGTGGCCTGAT+GGG - chr1_1:79245937-79245956 Msa0046820:CDS 40.0%
CGGGAAAAAATATACCCATC+AGG + chr1_1:79245954-79245973 None:intergenic 40.0%
! GGAAGAGTATGGTGAGAAAA+TGG + chr1_1:79246047-79246066 None:intergenic 40.0%
CTGAAAAACGTTCTTGAGGA+AGG + chr1_1:79246096-79246115 None:intergenic 40.0%
ATGGCTGAAAAACGTTCTTG+AGG + chr1_1:79246100-79246119 None:intergenic 40.0%
TCAGGTAAAAGGAAACTTGC+AGG - chr1_1:79246167-79246186 Msa0046820:intron 40.0%
TGTCGTCACTAATGAGACAA+TGG - chr1_1:79246255-79246274 Msa0046820:CDS 40.0%
CACTAATGAGACAATGGATG+TGG - chr1_1:79246261-79246280 Msa0046820:CDS 40.0%
! GATGTGGCGATTTTTGTGAT+AGG - chr1_1:79246277-79246296 Msa0046820:CDS 40.0%
GAATCGCCACATCTATTTCA+AGG + chr1_1:79246316-79246335 None:intergenic 40.0%
! TGGAACATGTCACTTGAGTA+GGG - chr1_1:79246609-79246628 Msa0046820:five_prime_UTR 40.0%
! GTATTCACAGTCCCCATTTT+GGG + chr1_1:79246637-79246656 None:intergenic 40.0%
! TGTATTCACAGTCCCCATTT+TGG + chr1_1:79246638-79246657 None:intergenic 40.0%
GGGACTGTGAATACAAGAAA+TGG - chr1_1:79246643-79246662 Msa0046820:five_prime_UTR 40.0%
GAATACAAGAAATGGGGGAT+TGG - chr1_1:79246651-79246670 Msa0046820:five_prime_UTR 40.0%
!! AAATGGGGGATTGGCTTATA+TGG - chr1_1:79246660-79246679 Msa0046820:five_prime_UTR 40.0%
TTACACCCCAAGTCTTCAAA+AGG - chr1_1:79246694-79246713 Msa0046820:intron 40.0%
TACACACCCAAGTCTTGAAA+AGG - chr1_1:79246736-79246755 Msa0046820:five_prime_UTR 40.0%
GAATATAGTGCAGTGGTGTG+AGG + chr1_1:79242340-79242359 None:intergenic 45.0%
GGAGTGTGCAGAAGAAGTAA+AGG + chr1_1:79242387-79242406 None:intergenic 45.0%
AAGGGGAATCTGGACAAAAG+GGG + chr1_1:79242453-79242472 None:intergenic 45.0%
GTAACAGTTATGGGTGGTGA+GGG - chr1_1:79242740-79242759 Msa0046820:three_prime_UTR 45.0%
TTGAAGTTGCGAGTGGCAAA+GGG - chr1_1:79242768-79242787 Msa0046820:three_prime_UTR 45.0%
ACAGGAGACATTTGGTCCAA+TGG + chr1_1:79242833-79242852 None:intergenic 45.0%
AATTGCGGAGAGGATGAAAC+AGG + chr1_1:79242851-79242870 None:intergenic 45.0%
! ATTTGATGGCAATTGCGGAG+AGG + chr1_1:79242861-79242880 None:intergenic 45.0%
! GGAGCATTTGATGGCAATTG+CGG + chr1_1:79242866-79242885 None:intergenic 45.0%
!! CCAGCAAAAGGAGCATTTGA+TGG + chr1_1:79242875-79242894 None:intergenic 45.0%
! CCATCAAATGCTCCTTTTGC+TGG - chr1_1:79242872-79242891 Msa0046820:intron 45.0%
TTTGGCAGAAGCAAGGAATC+AGG - chr1_1:79243135-79243154 Msa0046820:three_prime_UTR 45.0%
AGAAGCAAGGAATCAGGTCA+TGG - chr1_1:79243141-79243160 Msa0046820:intron 45.0%
ATGGAGGCTACAGAGAGATT+AGG - chr1_1:79243160-79243179 Msa0046820:intron 45.0%
CATCAGCATGATGCTGTAGT+AGG - chr1_1:79243282-79243301 Msa0046820:three_prime_UTR 45.0%
GCAAGCAACAACCATGATCA+TGG + chr1_1:79243704-79243723 None:intergenic 45.0%
ATCCATGCTGTGGAAACAGA+TGG + chr1_1:79243726-79243745 None:intergenic 45.0%
CTACGGAAATATCCATGCTG+TGG + chr1_1:79243736-79243755 None:intergenic 45.0%
AACCCAGTGTGACAACAAAG+AGG + chr1_1:79243842-79243861 None:intergenic 45.0%
! TCTTTGTTGTCACACTGGGT+TGG - chr1_1:79243841-79243860 Msa0046820:three_prime_UTR 45.0%
!! GTTGGTTTGTGGATAGTGTC+AGG - chr1_1:79243859-79243878 Msa0046820:three_prime_UTR 45.0%
CACTATACAGGAACCTGACA+CGG - chr1_1:79243958-79243977 Msa0046820:intron 45.0%
TTTCCAGCATTTGTGTACCC+GGG + chr1_1:79244148-79244167 None:intergenic 45.0%
AATGCCTGGATCAACGTAGA+TGG + chr1_1:79244284-79244303 None:intergenic 45.0%
TGCAATTCGGATGAAATGCC+TGG + chr1_1:79244298-79244317 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG - chr1_1:79244444-79244463 Msa0046820:intron 45.0%
CTCTTGTAAATAGGACCGGA+GGG - chr1_1:79244445-79244464 Msa0046820:intron 45.0%
! GCGTATGACTGAAGTGTTCT+CGG - chr1_1:79244530-79244549 Msa0046820:three_prime_UTR 45.0%
GCTGAAACTGCATCCAAAGA+AGG - chr1_1:79244589-79244608 Msa0046820:intron 45.0%
TGCCAAACTAGCACCTTCTT+TGG + chr1_1:79244605-79244624 None:intergenic 45.0%
! TTGGCAGACCAATGGTTTGT+TGG - chr1_1:79244619-79244638 Msa0046820:intron 45.0%
!!! GCTGTTTTGAGAATCCACAC+TGG + chr1_1:79244965-79244984 None:intergenic 45.0%
! GCTTGATGACATTTCAGGGA+AGG - chr1_1:79245051-79245070 Msa0046820:three_prime_UTR 45.0%
GGTTATTGGGTGTAATCGGA+CGG + chr1_1:79245735-79245754 None:intergenic 45.0%
ACCTTCTGGACTCTATCTGT+TGG - chr1_1:79245752-79245771 Msa0046820:three_prime_UTR 45.0%
ACCAACAGATAGAGTCCAGA+AGG + chr1_1:79245756-79245775 None:intergenic 45.0%
TGATGCAAAAGGGGATGAGA+AGG - chr1_1:79245864-79245883 Msa0046820:three_prime_UTR 45.0%
GTTCTCAATTTGTGGCCTGA+TGG - chr1_1:79245936-79245955 Msa0046820:CDS 45.0%
!! GCCTAGCCTTGAAATAGATG+TGG - chr1_1:79246307-79246326 Msa0046820:CDS 45.0%
GCCACATCTATTTCAAGGCT+AGG + chr1_1:79246311-79246330 None:intergenic 45.0%
! GTGGAACATGTCACTTGAGT+AGG - chr1_1:79246608-79246627 Msa0046820:five_prime_UTR 45.0%
! TTGAGTAGGGTGCCCAAAAT+GGG - chr1_1:79246622-79246641 Msa0046820:five_prime_UTR 45.0%
!!! AATATTAAAAATTGTTTTTT+TGG - chr1_1:79242561-79242580 Msa0046820:three_prime_UTR 5.0%
GAGAGGGTAAAAGGGGAATC+TGG + chr1_1:79242463-79242482 None:intergenic 50.0%
GTGGTGGTAACAGTTATGGG+TGG - chr1_1:79242734-79242753 Msa0046820:three_prime_UTR 50.0%
GGTAACAGTTATGGGTGGTG+AGG - chr1_1:79242739-79242758 Msa0046820:three_prime_UTR 50.0%
GGTAGAGTTGAAGTTGCGAG+TGG - chr1_1:79242761-79242780 Msa0046820:three_prime_UTR 50.0%
GTTGAAGTTGCGAGTGGCAA+AGG - chr1_1:79242767-79242786 Msa0046820:three_prime_UTR 50.0%
!! TTGGCGTTTTGGCAGAAGCA+AGG - chr1_1:79243128-79243147 Msa0046820:three_prime_UTR 50.0%
AGCAAGGAATCAGGTCATGG+AGG - chr1_1:79243144-79243163 Msa0046820:intron 50.0%
GAGGCTACAGAGAGATTAGG+TGG - chr1_1:79243163-79243182 Msa0046820:intron 50.0%
GATGCAGATTGGGGCTATAC+TGG + chr1_1:79243189-79243208 None:intergenic 50.0%
CAGCATGATGCTGTAGTAGG+AGG - chr1_1:79243285-79243304 Msa0046820:three_prime_UTR 50.0%
TGCCATCTGTTTCCACAGCA+TGG - chr1_1:79243721-79243740 Msa0046820:intron 50.0%
! TGGCCTCTTTGTTGTCACAC+TGG - chr1_1:79243836-79243855 Msa0046820:three_prime_UTR 50.0%
! GGCCTCTTTGTTGTCACACT+GGG - chr1_1:79243837-79243856 Msa0046820:three_prime_UTR 50.0%
!! TGTCACACTGGGTTGGTTTG+TGG - chr1_1:79243848-79243867 Msa0046820:three_prime_UTR 50.0%
TGCTCCATCTACGTTGATCC+AGG - chr1_1:79244277-79244296 Msa0046820:intron 50.0%
! CGCTAGCCTAACTGAAACAG+AGG + chr1_1:79244513-79244532 None:intergenic 50.0%
! GTGCTAGTTTGGCAGACCAA+TGG - chr1_1:79244611-79244630 Msa0046820:intron 50.0%
AACGGTCCCTGTACATCTTC+TGG - chr1_1:79244843-79244862 Msa0046820:intron 50.0%
TACTGCCCTGAAGATCGTCA+TGG + chr1_1:79245260-79245279 None:intergenic 50.0%
TTGGGTGTAATCGGACGGAT+CGG + chr1_1:79245730-79245749 None:intergenic 50.0%
CCTTTCTGTTAGAGGACGTG+TGG + chr1_1:79245914-79245933 None:intergenic 50.0%
CCACACGTCCTCTAACAGAA+AGG - chr1_1:79245911-79245930 Msa0046820:exon 50.0%
TCTCACCATACTCTTCCCTG+TGG - chr1_1:79246050-79246069 Msa0046820:intron 50.0%
CAGATTCAAGACATGCGGAC+AGG - chr1_1:79246339-79246358 Msa0046820:CDS 50.0%
GAAATGTTGAAGCGCGTGAG+TGG - chr1_1:79246452-79246471 Msa0046820:five_prime_UTR 50.0%
! CTTGAGTAGGGTGCCCAAAA+TGG - chr1_1:79246621-79246640 Msa0046820:five_prime_UTR 50.0%
! TGAGTAGGGTGCCCAAAATG+GGG - chr1_1:79246623-79246642 Msa0046820:five_prime_UTR 50.0%
GCTATAGCACTGCTGCACAG+CGG - chr1_1:79243560-79243579 Msa0046820:intron 55.0%
CTTCCCGGGTACACAAATGC+TGG - chr1_1:79244142-79244161 Msa0046820:three_prime_UTR 55.0%
! AATGGTGTCAGAAGTCGCCG+TGG - chr1_1:79245330-79245349 Msa0046820:three_prime_UTR 55.0%
TGACCTGCATTCGACGACCA+CGG + chr1_1:79245350-79245369 None:intergenic 55.0%
CCATACTCTTCCCTGTGGAC+CGG - chr1_1:79246055-79246074 Msa0046820:intron 55.0%
TCTCGGAAAACCGGTCCACA+GGG + chr1_1:79246068-79246087 None:intergenic 55.0%
ATCTCGGAAAACCGGTCCAC+AGG + chr1_1:79246069-79246088 None:intergenic 55.0%
!! GTGGACCGGTTTTCCGAGAT+CGG - chr1_1:79246069-79246088 Msa0046820:intron 55.0%
AAGGGCCGATCTCGGAAAAC+CGG + chr1_1:79246077-79246096 None:intergenic 55.0%
TCTTGAGGAAGGGCCGATCT+CGG + chr1_1:79246085-79246104 None:intergenic 55.0%
AGTAAGGAAACAGCGGAGCG+TGG - chr1_1:79246380-79246399 Msa0046820:CDS 55.0%
GTAAGGAAACAGCGGAGCGT+GGG - chr1_1:79246381-79246400 Msa0046820:CDS 55.0%
!! CGAGTGGCAAAGGGTGTTCG+AGG - chr1_1:79242777-79242796 Msa0046820:three_prime_UTR 60.0%
CCGGTCCACAGGGAAGAGTA+TGG + chr1_1:79246058-79246077 None:intergenic 60.0%
TCGCCGTGGTCGTCGAATGC+AGG - chr1_1:79245344-79245363 Msa0046820:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 79242284 79246889 79242284 ID=Msa0046820;Name=Msa0046820
chr1_1 mRNA 79242284 79246889 79242284 ID=Msa0046820-mRNA-1;Parent=Msa0046820;Name=Msa0046820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=445|1|1|1|0.87|0.66|9|2398|98
chr1_1 exon 79242284 79242874 79242284 ID=Msa0046820-mRNA-1:exon:27301;Parent=Msa0046820-mRNA-1
chr1_1 exon 79243003 79243156 79243003 ID=Msa0046820-mRNA-1:exon:27300;Parent=Msa0046820-mRNA-1
chr1_1 exon 79243241 79243458 79243241 ID=Msa0046820-mRNA-1:exon:27299;Parent=Msa0046820-mRNA-1
chr1_1 exon 79243808 79243936 79243808 ID=Msa0046820-mRNA-1:exon:27298;Parent=Msa0046820-mRNA-1
chr1_1 exon 79244101 79244211 79244101 ID=Msa0046820-mRNA-1:exon:27297;Parent=Msa0046820-mRNA-1
chr1_1 exon 79244456 79244587 79244456 ID=Msa0046820-mRNA-1:exon:27296;Parent=Msa0046820-mRNA-1
chr1_1 exon 79244849 79246030 79244849 ID=Msa0046820-mRNA-1:exon:27295;Parent=Msa0046820-mRNA-1
chr1_1 exon 79246247 79246709 79246247 ID=Msa0046820-mRNA-1:exon:27294;Parent=Msa0046820-mRNA-1
chr1_1 exon 79246730 79246889 79246730 ID=Msa0046820-mRNA-1:exon:27293;Parent=Msa0046820-mRNA-1
chr1_1 five_prime_UTR 79246730 79246889 79246730 ID=Msa0046820-mRNA-1:five_prime_utr;Parent=Msa0046820-mRNA-1
chr1_1 five_prime_UTR 79246425 79246709 79246425 ID=Msa0046820-mRNA-1:five_prime_utr;Parent=Msa0046820-mRNA-1
chr1_1 CDS 79246247 79246424 79246247 ID=Msa0046820-mRNA-1:cds;Parent=Msa0046820-mRNA-1
chr1_1 CDS 79245912 79246030 79245912 ID=Msa0046820-mRNA-1:cds;Parent=Msa0046820-mRNA-1
chr1_1 three_prime_UTR 79244849 79245911 79244849 ID=Msa0046820-mRNA-1:three_prime_utr;Parent=Msa0046820-mRNA-1
chr1_1 three_prime_UTR 79244456 79244587 79244456 ID=Msa0046820-mRNA-1:three_prime_utr;Parent=Msa0046820-mRNA-1
chr1_1 three_prime_UTR 79244101 79244211 79244101 ID=Msa0046820-mRNA-1:three_prime_utr;Parent=Msa0046820-mRNA-1
chr1_1 three_prime_UTR 79243808 79243936 79243808 ID=Msa0046820-mRNA-1:three_prime_utr;Parent=Msa0046820-mRNA-1
chr1_1 three_prime_UTR 79243241 79243458 79243241 ID=Msa0046820-mRNA-1:three_prime_utr;Parent=Msa0046820-mRNA-1
chr1_1 three_prime_UTR 79243003 79243156 79243003 ID=Msa0046820-mRNA-1:three_prime_utr;Parent=Msa0046820-mRNA-1
chr1_1 three_prime_UTR 79242284 79242874 79242284 ID=Msa0046820-mRNA-1:three_prime_utr;Parent=Msa0046820-mRNA-1
Gene Sequence

>Msa0046820

ATGGGTGGTGAGGGTAGAGTTGAAGTTGCGAGTGGCAAAGGGTGTTCGAGGCTGTTTTCGTCTTCAATCAGAACTCTTCAACCATTGGACCAAATGTCTCCTGTTTCATCCTCTCCGCAATTGCCATCAAATGCTCCTTTTGCTGGTCTTGTTATATGTGTTACCGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATCTGCATCCTCAATGTACTCATTTGGTGGTTCAGATATCCTTTCCTTCTAAATCATCTTGA
Protein sequence

>Msa0046820

MGGEGRVEVASGKGCSRLFSSSIRTLQPLDQMSPVSSSPQLPSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQISFPSKSS*