AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0345010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0345010 MtrunA17_Chr6g0473061 97.701 87 2 0 1 87 1 87 5.09e-56 181
Msa0345010 MtrunA17_Chr3g0136481 97.701 87 2 0 1 87 1 87 5.65e-56 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0345010 AT2G26270.1 54.255 94 33 2 1 92 1 86 1.21e-24 96.7
Msa0345010 AT3G43930.3 52.000 100 38 2 1 90 1 100 3.24e-23 90.9
Msa0345010 AT3G43930.1 52.000 100 38 2 1 90 1 100 4.16e-23 92.0
Msa0345010 AT3G43930.2 52.000 100 38 2 1 90 1 100 4.61e-23 91.7

Find 177 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATAGTTTGAAGAATTA+TGG 0.150732 3_1:-4040588 Msa0345010:three_prime_UTR
TACGGTTATCTATAGTATTT+TGG 0.194222 3_1:-4037806 Msa0345010:three_prime_UTR
TGTATTCACAGTCCCCATTT+TGG 0.213595 3_1:+4038038 None:intergenic
GAAAATTAAGAGAGGGTAAA+AGG 0.221597 3_1:+4042204 None:intergenic
GATGAGTATGCTTGATTTCA+TGG 0.230447 3_1:+4040487 None:intergenic
CTGATGCTTGATGACATTTC+AGG 0.260903 3_1:-4039627 Msa0345010:three_prime_UTR
CAGGGCAGTAAAAGTGAAAT+TGG 0.280733 3_1:-4039403 Msa0345010:three_prime_UTR
GATAGAGTCCAGAAGGTTAT+TGG 0.281598 3_1:+4038927 None:intergenic
TGCCAAACTAGCACCTTCTT+TGG 0.298759 3_1:+4040071 None:intergenic
CTTGAGTAGGGTGCCCAAAA+TGG 0.298928 3_1:-4038052 Msa0345010:three_prime_UTR
GAGAACAACCTTTCTGTTAG+AGG 0.306209 3_1:+4038754 None:intergenic
TATGCAGAACAAACCCAAAT+TGG 0.309654 3_1:+4042153 None:intergenic
TTACGAACCACTTGAACTTT+TGG 0.310539 3_1:-4037840 Msa0345010:three_prime_UTR
AAAAGTCCATGACGATCTTC+AGG 0.319631 3_1:-4039422 Msa0345010:three_prime_UTR
TTGTGTGAGAGAAGTAATTT+TGG 0.327368 3_1:-4041284 Msa0345010:three_prime_UTR
ACTGAAAGAGTCTGTGTAAA+TGG 0.327959 3_1:+4038870 None:intergenic
TGTTAGCATGTCTGTTGATT+TGG 0.329381 3_1:-4039664 Msa0345010:three_prime_UTR
ATAAAGTAGAAATACTGATA+TGG 0.331846 3_1:+4041259 None:intergenic
AACAAACCCAAATTGGAAAA+AGG 0.336046 3_1:+4042160 None:intergenic
CAATTCACAATTGACAAAAC+TGG 0.339488 3_1:-4041065 Msa0345010:three_prime_UTR
TTTATAGTTTGAAGAATTAT+GGG 0.341154 3_1:-4040587 Msa0345010:three_prime_UTR
GGAAGAGTATGGTGAGAAAA+TGG 0.345135 3_1:+4038629 None:intergenic
TTTAACATATAGCACAGTTT+TGG 0.346095 3_1:-4040902 Msa0345010:three_prime_UTR
CTCTATCTGTTGGTCAATAT+CGG 0.352911 3_1:-4038911 Msa0345010:three_prime_UTR
AAAATTCAAGATGATTTAGA+AGG 0.353960 3_1:+4041429 None:intergenic
TTGATTTCATGGATTCTTGC+AGG 0.362130 3_1:+4040498 None:intergenic
GATGCAGATTGGGGCTATAC+TGG 0.365924 3_1:+4041487 None:intergenic
GGTCTTGTTATATGTGTTAC+CGG 0.369177 3_1:-4041780 Msa0345010:CDS
ATCCAAAGAAGGTGCTAGTT+TGG 0.369729 3_1:-4040073 Msa0345010:three_prime_UTR
TTTAGTGGTGGTAACAGTTA+TGG 0.374078 3_1:-4041943 Msa0345010:exon
GATTACACCCAATAACCTTC+TGG 0.380114 3_1:-4038935 Msa0345010:three_prime_UTR
TTGAGTAGGGTGCCCAAAAT+GGG 0.388027 3_1:-4038051 Msa0345010:three_prime_UTR
TGCTGATGCTATTATTATAT+AGG 0.395336 3_1:+4041406 None:intergenic
TGCAGAGTCTAACAGAAGTT+TGG 0.395732 3_1:-4040436 Msa0345010:three_prime_UTR
GTACATTGAGGATGCAGATT+GGG 0.398670 3_1:+4041477 None:intergenic
TGCAATTCGGATGAAATGCC+TGG 0.401863 3_1:+4040378 None:intergenic
TTTGGCAGAAGCAAGGAATC+AGG 0.406989 3_1:-4041538 Msa0345010:intron
TTAGTGGTGGTAACAGTTAT+GGG 0.408245 3_1:-4041942 Msa0345010:exon
TCGATCAGTTTACTCAAGTA+AGG 0.418161 3_1:-4038309 Msa0345010:three_prime_UTR
GAAGAATTTCGAAGATTCTC+TGG 0.419860 3_1:-4040459 Msa0345010:three_prime_UTR
TGTCACACTGGGTTGGTTTG+TGG 0.422711 3_1:-4040825 Msa0345010:three_prime_UTR
ACATCCATTCAAAGATATCT+TGG 0.423871 3_1:-4040000 Msa0345010:three_prime_UTR
AAAATTAAGAGAGGGTAAAA+GGG 0.424229 3_1:+4042205 None:intergenic
AGTTTGGACTCAAGTTTGTC+TGG 0.430371 3_1:-4040420 Msa0345010:three_prime_UTR
AGTAAAGGACAATAAGAAAA+GGG 0.431926 3_1:+4042304 None:intergenic
GCATCCTCAATGTACTCATT+TGG 0.432536 3_1:-4041469 Msa0345010:CDS
TTGTGAATTGCAGAAAATAG+AGG 0.434508 3_1:+4041078 None:intergenic
GGCCTCTTTGTTGTCACACT+GGG 0.434913 3_1:-4040836 Msa0345010:three_prime_UTR
AAGTAAAGGACAATAAGAAA+AGG 0.436020 3_1:+4042303 None:intergenic
GAATCGCCACATCTATTTCA+AGG 0.441565 3_1:+4038360 None:intergenic
GGGACTGTGAATACAAGAAA+TGG 0.443737 3_1:-4038030 Msa0345010:three_prime_UTR
ATCCACACCTTTAGATAAAC+CGG 0.444295 3_1:+4041761 None:intergenic
AGAAGGTTATTGGGTGTAAT+CGG 0.444905 3_1:+4038937 None:intergenic
CTTCAAACTATAAAGTGATT+CGG 0.448581 3_1:+4040596 None:intergenic
AATGCCTGGATCAACGTAGA+TGG 0.449609 3_1:+4040392 None:intergenic
CCAGCAAAAGGAGCATTTGA+TGG 0.452352 3_1:+4041801 None:intergenic
TCCTCAATGTACTCATTTGG+TGG 0.452439 3_1:-4041466 Msa0345010:CDS
TGTGTTACCGGTTTATCTAA+AGG 0.452554 3_1:-4041768 Msa0345010:intron
CTTGAAGTCATGCACTATAC+AGG 0.453779 3_1:-4040727 Msa0345010:three_prime_UTR
ATAGAGTCCAGAAGGTTATT+GGG 0.457546 3_1:+4038928 None:intergenic
CTGAAATGTCATCAAGCATC+AGG 0.464163 3_1:+4039628 None:intergenic
ATCTCGGAAAACCGGTCCAC+AGG 0.464717 3_1:+4038607 None:intergenic
TTGGCAGACCAATGGTTTGT+TGG 0.465550 3_1:-4040054 Msa0345010:three_prime_UTR
ATGTGTATGAGTTATTACTT+AGG 0.468174 3_1:-4038184 Msa0345010:three_prime_UTR
TAAAGTAGAAATACTGATAT+GGG 0.475297 3_1:+4041260 None:intergenic
TGCCATCTGTTTCCACAGCA+TGG 0.475634 3_1:-4040952 Msa0345010:three_prime_UTR
TGCTCCATCTACGTTGATCC+AGG 0.475904 3_1:-4040396 Msa0345010:three_prime_UTR
TTACACCCCAAGTCTTCAAA+AGG 0.477167 3_1:-4037979 Msa0345010:three_prime_UTR
TGATGCAAAAGGGGATGAGA+AGG 0.477811 3_1:-4038809 Msa0345010:three_prime_UTR
CATCAGCATGATGCTGTAGT+AGG 0.481432 3_1:-4041391 Msa0345010:three_prime_UTR
GAAGACATGTAAAACCGTTA+TGG 0.482418 3_1:+4038557 None:intergenic
GAGTTATTACTTAGGGCATA+AGG 0.483600 3_1:-4038176 Msa0345010:three_prime_UTR
TCTTTGTTGTCACACTGGGT+TGG 0.484753 3_1:-4040832 Msa0345010:three_prime_UTR
AATATCACAAAAGCCGTGTC+AGG 0.485399 3_1:+4040702 None:intergenic
TGGGGATAACAATATGAAGT+TGG 0.486015 3_1:-4040568 Msa0345010:three_prime_UTR
TGATGCTTGATGACATTTCA+GGG 0.486927 3_1:-4039626 Msa0345010:three_prime_UTR
CCATGATCATGGTTCATAAG+AGG 0.487562 3_1:+4040983 None:intergenic
AATCAGAACTCTTCAACCAT+TGG 0.490906 3_1:-4041859 Msa0345010:CDS
TCAGTATTTCTACTTTATCT+CGG 0.491918 3_1:-4041254 Msa0345010:three_prime_UTR
TCAAGATGATTTAGAAGGAA+AGG 0.492055 3_1:+4041434 None:intergenic
AATTGCGGAGAGGATGAAAC+AGG 0.492134 3_1:+4041825 None:intergenic
CTGTTACATTAAAGATGTGT+TGG 0.492623 3_1:-4038087 Msa0345010:three_prime_UTR
TACACACCCAAGTCTTGAAA+AGG 0.493665 3_1:-4037937 Msa0345010:three_prime_UTR
GGACTGTGAATACAAGAAAT+GGG 0.494131 3_1:-4038029 Msa0345010:three_prime_UTR
GTTGAAGTTGCGAGTGGCAA+AGG 0.494441 3_1:-4041906 Msa0345010:CDS
CCGGTCCACAGGGAAGAGTA+TGG 0.500922 3_1:+4038618 None:intergenic
AAGGGCCGATCTCGGAAAAC+CGG 0.502602 3_1:+4038599 None:intergenic
TGTGTATGAGTTATTACTTA+GGG 0.502710 3_1:-4038183 Msa0345010:three_prime_UTR
TGGCCTCTTTGTTGTCACAC+TGG 0.503600 3_1:-4040837 Msa0345010:three_prime_UTR
TCGCCGTGGTCGTCGAATGC+AGG 0.505488 3_1:-4039329 Msa0345010:intron
CGAGTGGCAAAGGGTGTTCG+AGG 0.509530 3_1:-4041896 Msa0345010:CDS
AGGATGAAACAGGAGACATT+TGG 0.509792 3_1:+4041835 None:intergenic
AGTACATTGAGGATGCAGAT+TGG 0.510198 3_1:+4041476 None:intergenic
CCATACTCTTCCCTGTGGAC+CGG 0.511727 3_1:-4038618 Msa0345010:three_prime_UTR
GCAAGCAACAACCATGATCA+TGG 0.516567 3_1:+4040972 None:intergenic
ATGGAGGCTACAGAGAGATT+AGG 0.517779 3_1:-4041513 Msa0345010:CDS
GGAGCATTTGATGGCAATTG+CGG 0.518188 3_1:+4041810 None:intergenic
CTTCCCGGGTACACAAATGC+TGG 0.520659 3_1:-4040531 Msa0345010:three_prime_UTR
CATATAACAAGACCAGCAAA+AGG 0.535472 3_1:+4041789 None:intergenic
GCTGAAACTGCATCCAAAGA+AGG 0.536257 3_1:-4040084 Msa0345010:three_prime_UTR
ACAGGAGACATTTGGTCCAA+TGG 0.538148 3_1:+4041843 None:intergenic
TTGAAGTTGCGAGTGGCAAA+GGG 0.545784 3_1:-4041905 Msa0345010:CDS
ATTTCCAGCATTTGTGTACC+CGG 0.546283 3_1:+4040527 None:intergenic
TCTTGAGGAAGGGCCGATCT+CGG 0.547315 3_1:+4038591 None:intergenic
AAAGTCCATGACGATCTTCA+GGG 0.549038 3_1:-4039421 Msa0345010:three_prime_UTR
GGAGTGTGCAGAAGAAGTAA+AGG 0.549629 3_1:+4042289 None:intergenic
GTTGATTTGGCAAGACAAGT+TGG 0.550833 3_1:-4039651 Msa0345010:three_prime_UTR
AAGATTTCATGATGGTACTA+CGG 0.556839 3_1:+4040923 None:intergenic
GTTGGTTTGTGGATAGTGTC+AGG 0.558130 3_1:-4040814 Msa0345010:three_prime_UTR
ATATACTTACATGAACCCAT+TGG 0.558502 3_1:-4041354 Msa0345010:three_prime_UTR
GTGCTAGTTTGGCAGACCAA+TGG 0.559716 3_1:-4040062 Msa0345010:three_prime_UTR
GCCACATCTATTTCAAGGCT+AGG 0.562789 3_1:+4038365 None:intergenic
GTTAGTCATGTAGTCACTGA+AGG 0.562909 3_1:-4040024 Msa0345010:three_prime_UTR
TTTGAGCATGCAGTAAAGCA+TGG 0.564693 3_1:-4040869 Msa0345010:three_prime_UTR
GTAACAGTTATGGGTGGTGA+GGG 0.565849 3_1:-4041933 Msa0345010:exon
GTGGAACATGTCACTTGAGT+AGG 0.567006 3_1:-4038065 Msa0345010:three_prime_UTR
CACTATACAGGAACCTGACA+CGG 0.569964 3_1:-4040715 Msa0345010:three_prime_UTR
CAGATTCAAGACATGCGGAC+AGG 0.572808 3_1:-4038334 Msa0345010:three_prime_UTR
GTATCCAAGATATCTTTGAA+TGG 0.574153 3_1:+4039996 None:intergenic
GTAAGGAAACAGCGGAGCGT+GGG 0.574806 3_1:-4038292 Msa0345010:three_prime_UTR
ACCTTCTGGACTCTATCTGT+TGG 0.575317 3_1:-4038921 Msa0345010:three_prime_UTR
AGTAAGGAAACAGCGGAGCG+TGG 0.576929 3_1:-4038293 Msa0345010:three_prime_UTR
GCTTGATGACATTTCAGGGA+AGG 0.577574 3_1:-4039622 Msa0345010:intron
CAAATTGGGAAAATTAAGAG+AGG 0.577775 3_1:+4042196 None:intergenic
CAGCATGATGCTGTAGTAGG+AGG 0.577914 3_1:-4041388 Msa0345010:three_prime_UTR
TTCATCCGAATTGCAAAACA+AGG 0.577926 3_1:-4040370 Msa0345010:intron
AAATTAAGAGAGGGTAAAAG+GGG 0.585895 3_1:+4042206 None:intergenic
CATTACAGCCAACAAACCAT+TGG 0.587337 3_1:+4040046 None:intergenic
TACATTGAGGATGCAGATTG+GGG 0.589195 3_1:+4041478 None:intergenic
TAGAAGCACTCACTGTAATG+AGG 0.589590 3_1:+4039965 None:intergenic
TACTGCCCTGAAGATCGTCA+TGG 0.589825 3_1:+4039416 None:intergenic
AATAAGATATTGATGAGCAC+AGG 0.593011 3_1:+4041023 None:intergenic
TACAAAATATTGTGAAGTAG+CGG 0.596986 3_1:-4041137 Msa0345010:three_prime_UTR
GTGGATTCTCAAAACAGCTA+AGG 0.597139 3_1:-4039706 Msa0345010:three_prime_UTR
CCTTTCTGTTAGAGGACGTG+TGG 0.598952 3_1:+4038762 None:intergenic
AAAAGCTTCTCTTCATCACC+AGG 0.600801 3_1:+4042021 None:intergenic
TTACATTAAAGATGTGTTGG+TGG 0.602391 3_1:-4038084 Msa0345010:three_prime_UTR
TCTCGGAAAACCGGTCCACA+GGG 0.604616 3_1:+4038608 None:intergenic
TTGGGTGTAATCGGACGGAT+CGG 0.604793 3_1:+4038946 None:intergenic
GGTAACAGTTATGGGTGGTG+AGG 0.606272 3_1:-4041934 Msa0345010:exon
CCTCTTATGAACCATGATCA+TGG 0.608938 3_1:-4040983 Msa0345010:three_prime_UTR
ACCAACAGATAGAGTCCAGA+AGG 0.609079 3_1:+4038920 None:intergenic
CCACACGTCCTCTAACAGAA+AGG 0.609978 3_1:-4038762 Msa0345010:intron
GAAATGTTGAAGCGCGTGAG+TGG 0.613290 3_1:-4038221 Msa0345010:three_prime_UTR
ATATGTTAAAGATTTCATGA+TGG 0.613863 3_1:+4040915 None:intergenic
TGGAACATGTCACTTGAGTA+GGG 0.616343 3_1:-4038064 Msa0345010:three_prime_UTR
AGTGTATCGCAGAACAATAG+TGG 0.616508 3_1:+4041170 None:intergenic
ATCCATGCTGTGGAAACAGA+TGG 0.617621 3_1:+4040950 None:intergenic
CTACGGAAATATCCATGCTG+TGG 0.623393 3_1:+4040940 None:intergenic
AACCCAGTGTGACAACAAAG+AGG 0.624024 3_1:+4040834 None:intergenic
CTAAGGAGAAACAAGTGCAA+AGG 0.624728 3_1:-4039689 Msa0345010:three_prime_UTR
ACATAACTTGAAATTCAAAG+AGG 0.625524 3_1:+4042070 None:intergenic
GACTGTGAATACAAGAAATG+GGG 0.626820 3_1:-4038028 Msa0345010:three_prime_UTR
TTATAGTTTGAAGAATTATG+GGG 0.627002 3_1:-4040586 Msa0345010:three_prime_UTR
GGTTATTGGGTGTAATCGGA+CGG 0.627487 3_1:+4038941 None:intergenic
TGAGTAGGGTGCCCAAAATG+GGG 0.631792 3_1:-4038050 Msa0345010:three_prime_UTR
GCCTAGCCTTGAAATAGATG+TGG 0.639029 3_1:-4038366 Msa0345010:three_prime_UTR
TTAGTCATGTAGTCACTGAA+GGG 0.640621 3_1:-4040023 Msa0345010:three_prime_UTR
GAATATAGTGCAGTGGTGTG+AGG 0.641520 3_1:+4042336 None:intergenic
AGAAGCAAGGAATCAGGTCA+TGG 0.644925 3_1:-4041532 Msa0345010:CDS
GAGGCTACAGAGAGATTAGG+TGG 0.645575 3_1:-4041510 Msa0345010:CDS
TCTCACCATACTCTTCCCTG+TGG 0.646627 3_1:-4038623 Msa0345010:three_prime_UTR
ACCACCAAATGAGTACATTG+AGG 0.647498 3_1:+4041465 None:intergenic
TTTCCAGCATTTGTGTACCC+GGG 0.655427 3_1:+4040528 None:intergenic
AAGTAATAACTCATACACAT+TGG 0.664276 3_1:+4038187 None:intergenic
AAATTGGGAAAATTAAGAGA+GGG 0.670526 3_1:+4042197 None:intergenic
TCATACAGATTCAAGACATG+CGG 0.674214 3_1:-4038339 Msa0345010:three_prime_UTR
ATTTGATGGCAATTGCGGAG+AGG 0.674786 3_1:+4041815 None:intergenic
TGACCTGCATTCGACGACCA+CGG 0.680999 3_1:+4039326 None:intergenic
GCTATAGCACTGCTGCACAG+CGG 0.683726 3_1:-4041113 Msa0345010:three_prime_UTR
ATGATATTTCTCAGCCAGTG+TGG 0.684887 3_1:-4039725 Msa0345010:intron
GGTAGAGTTGAAGTTGCGAG+TGG 0.698549 3_1:-4041912 Msa0345010:CDS
AGCAAGGAATCAGGTCATGG+AGG 0.703167 3_1:-4041529 Msa0345010:CDS
ACTGTGAATACAAGAAATGG+GGG 0.709309 3_1:-4038027 Msa0345010:three_prime_UTR
GTGGTGGTAACAGTTATGGG+TGG 0.723421 3_1:-4041939 Msa0345010:exon
AATGGTGTCAGAAGTCGCCG+TGG 0.728899 3_1:-4039343 Msa0345010:three_prime_UTR
TTACTCAAGTAAGGAAACAG+CGG 0.729643 3_1:-4038300 Msa0345010:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGCTTTTTTTTTTTTTTAA+CGG - chr3_1:4040347-4040366 Msa0345010:intron 10.0%
!! TTTATAGTTTGAAGAATTAT+GGG - chr3_1:4039608-4039627 Msa0345010:intron 15.0%
!! TCCTATTTATAAGAAAAATT+TGG - chr3_1:4039875-4039894 Msa0345010:intron 15.0%
!! CCTATTTATAAGAAAAATTT+GGG - chr3_1:4039876-4039895 Msa0345010:intron 15.0%
!!! AAACATTTAGAATAATCTTT+TGG - chr3_1:4040275-4040294 Msa0345010:intron 15.0%
!! TATTATAACAAATGCTAATA+AGG + chr3_1:4041715-4041734 None:intergenic 15.0%
!!! TATTAGCATTTGTTATAATA+CGG - chr3_1:4041715-4041734 Msa0345010:intron 15.0%
!!! TGAATTTTTAGGATGAAAAA+TGG + chr3_1:4037930-4037949 None:intergenic 20.0%
!!! GTGAAATTTTTGAACAAATT+GGG + chr3_1:4038016-4038035 None:intergenic 20.0%
!! GTTAATGTTATTCTTTGAAT+TGG - chr3_1:4038631-4038650 Msa0345010:three_prime_UTR 20.0%
!! AAAATTCAAGATGATTTAGA+AGG + chr3_1:4038769-4038788 None:intergenic 20.0%
!!! AATTGTTTGCTTAACTTTTT+TGG - chr3_1:4038888-4038907 Msa0345010:three_prime_UTR 20.0%
!! TAAAGTAGAAATACTGATAT+GGG + chr3_1:4038938-4038957 None:intergenic 20.0%
!! ATAAAGTAGAAATACTGATA+TGG + chr3_1:4038939-4038958 None:intergenic 20.0%
!! ATATGTTAAAGATTTCATGA+TGG + chr3_1:4039283-4039302 None:intergenic 20.0%
!! CTTTATAGTTTGAAGAATTA+TGG - chr3_1:4039607-4039626 Msa0345010:intron 20.0%
!! TTATAGTTTGAAGAATTATG+GGG - chr3_1:4039609-4039628 Msa0345010:intron 20.0%
!!! ATTTTTCTTATAAATAGGAC+CGG + chr3_1:4039874-4039893 None:intergenic 20.0%
!!! CCCAAATTTTTCTTATAAAT+AGG + chr3_1:4039879-4039898 None:intergenic 20.0%
!! TCAACAAAAGTTAATGAATT+TGG + chr3_1:4039938-4039957 None:intergenic 20.0%
!!! AATATCTAGACATTTTGTAA+TGG - chr3_1:4040000-4040019 Msa0345010:three_prime_UTR 20.0%
!! ATTAATATTATGCGATAAGT+AGG - chr3_1:4040404-4040423 Msa0345010:three_prime_UTR 20.0%
!! TCATTGTGATGTAAATAATA+CGG + chr3_1:4040436-4040455 None:intergenic 20.0%
!! CGAAATTAAATATTCCAATA+TGG + chr3_1:4041112-4041131 None:intergenic 20.0%
!!! TTTTGCATCAAAAAATATTG+AGG + chr3_1:4041376-4041395 None:intergenic 20.0%
!!! TCAATATTTTTTGATGCAAA+AGG - chr3_1:4041375-4041394 Msa0345010:three_prime_UTR 20.0%
!!! CAATATTTTTTGATGCAAAA+GGG - chr3_1:4041376-4041395 Msa0345010:three_prime_UTR 20.0%
!!! AATATTTTTTGATGCAAAAG+GGG - chr3_1:4041377-4041396 Msa0345010:three_prime_UTR 20.0%
!!! TATGGCTTAATATTTCATTT+TGG - chr3_1:4041506-4041525 Msa0345010:CDS 20.0%
!!! ATGGTTTTTAAATATCAACT+CGG + chr3_1:4041550-4041569 None:intergenic 20.0%
!!! TTGAAACGAATTGAATTTTT+GGG - chr3_1:4041935-4041954 Msa0345010:exon 20.0%
!!! TTTTTTTGAATATAGTGCAG+TGG + chr3_1:4037869-4037888 None:intergenic 25.0%
! AGTAAAGGACAATAAGAAAA+GGG + chr3_1:4037894-4037913 None:intergenic 25.0%
! AAGTAAAGGACAATAAGAAA+AGG + chr3_1:4037895-4037914 None:intergenic 25.0%
!! GAGACAAAGAATGAATTTTT+AGG + chr3_1:4037941-4037960 None:intergenic 25.0%
! AAAATTAAGAGAGGGTAAAA+GGG + chr3_1:4037993-4038012 None:intergenic 25.0%
! AAATTGGGAAAATTAAGAGA+GGG + chr3_1:4038001-4038020 None:intergenic 25.0%
!! GGTGAAATTTTTGAACAAAT+TGG + chr3_1:4038017-4038036 None:intergenic 25.0%
!! AATTTCACCTTTTTCCAATT+TGG - chr3_1:4038028-4038047 Msa0345010:three_prime_UTR 25.0%
!! ATTTCACCTTTTTCCAATTT+GGG - chr3_1:4038029-4038048 Msa0345010:three_prime_UTR 25.0%
!!! AATTGTTTTTTTGGTCAATG+AGG - chr3_1:4038092-4038111 Msa0345010:three_prime_UTR 25.0%
! ACATAACTTGAAATTCAAAG+AGG + chr3_1:4038128-4038147 None:intergenic 25.0%
!! TATATAGATTTTCAATTGCC+TGG - chr3_1:4038156-4038175 Msa0345010:three_prime_UTR 25.0%
! TGCTGATGCTATTATTATAT+AGG + chr3_1:4038792-4038811 None:intergenic 25.0%
!!! TAACAGAACTTTTTTCCAAT+GGG + chr3_1:4038859-4038878 None:intergenic 25.0%
!!! TTAACAGAACTTTTTTCCAA+TGG + chr3_1:4038860-4038879 None:intergenic 25.0%
!! AAGTTAAGCAAACAATTTTC+AGG + chr3_1:4038885-4038904 None:intergenic 25.0%
!! TCAGTATTTCTACTTTATCT+CGG - chr3_1:4038941-4038960 Msa0345010:three_prime_UTR 25.0%
!!! ATCTCGGTATTTTTAAATAG+TGG - chr3_1:4038957-4038976 Msa0345010:three_prime_UTR 25.0%
!! TTTTTAAATAGTGGCTATAG+TGG - chr3_1:4038966-4038985 Msa0345010:intron 25.0%
! TACAAAATATTGTGAAGTAG+CGG - chr3_1:4039058-4039077 Msa0345010:intron 25.0%
!! TTTAACATATAGCACAGTTT+TGG - chr3_1:4039293-4039312 Msa0345010:intron 25.0%
! CTTCAAACTATAAAGTGATT+CGG + chr3_1:4039602-4039621 None:intergenic 25.0%
!!! ATTTACCTTGTTTTGCAATT+CGG + chr3_1:4039833-4039852 None:intergenic 25.0%
! CTCAAATTTCTCTTGTAAAT+AGG - chr3_1:4039958-4039977 Msa0345010:intron 25.0%
!!! CATTTAGAATAATCTTTTGG+AGG - chr3_1:4040278-4040297 Msa0345010:intron 25.0%
! TGATGTAAATAATACGGTAT+AGG + chr3_1:4040430-4040449 None:intergenic 25.0%
! GTATTTACAATTCCAAGAAA+AGG + chr3_1:4040629-4040648 None:intergenic 25.0%
! AAAATTAGCGAGTTTAATCT+TGG + chr3_1:4040651-4040670 None:intergenic 25.0%
! TCACAATTTCAAGAAAATGA+GGG + chr3_1:4040716-4040735 None:intergenic 25.0%
! ATCACAATTTCAAGAAAATG+AGG + chr3_1:4040717-4040736 None:intergenic 25.0%
! ATTGTAAATTCAGCGAAAAA+TGG - chr3_1:4040834-4040853 Msa0345010:three_prime_UTR 25.0%
! AAATCACATGTATAGATTAG+TGG + chr3_1:4041012-4041031 None:intergenic 25.0%
! AAAGATAACAAACTAAAGAC+AGG + chr3_1:4041149-4041168 None:intergenic 25.0%
!! ATTGAGGTATGATTTTCATT+AGG + chr3_1:4041360-4041379 None:intergenic 25.0%
! TTAAGCCATATTTACTACAT+CGG + chr3_1:4041496-4041515 None:intergenic 25.0%
!! GTTGAAACGAATTGAATTTT+TGG - chr3_1:4041934-4041953 Msa0345010:exon 25.0%
! AAGTAATAACTCATACACAT+TGG + chr3_1:4042011-4042030 None:intergenic 25.0%
! ATGTGTATGAGTTATTACTT+AGG - chr3_1:4042011-4042030 Msa0345010:five_prime_UTR 25.0%
! TGTGTATGAGTTATTACTTA+GGG - chr3_1:4042012-4042031 Msa0345010:five_prime_UTR 25.0%
!!! TTAAATCCTTTTCAAGACTT+GGG + chr3_1:4042267-4042286 None:intergenic 25.0%
!!! ATTAAATCCTTTTCAAGACT+TGG + chr3_1:4042268-4042287 None:intergenic 25.0%
!!! CTTTTGGTTTTTCATTGTTA+CGG - chr3_1:4042371-4042390 Msa0345010:five_prime_UTR 25.0%
! TTTTGTGTGTGATTCCATTT+TGG + chr3_1:4037810-4037829 None:intergenic 30.0%
AAATTAAGAGAGGGTAAAAG+GGG + chr3_1:4037992-4038011 None:intergenic 30.0%
GAAAATTAAGAGAGGGTAAA+AGG + chr3_1:4037994-4038013 None:intergenic 30.0%
CAAATTGGGAAAATTAAGAG+AGG + chr3_1:4038002-4038021 None:intergenic 30.0%
AACAAACCCAAATTGGAAAA+AGG + chr3_1:4038038-4038057 None:intergenic 30.0%
TCATGTCTTCTATGATTGAT+TGG - chr3_1:4038457-4038476 Msa0345010:intron 30.0%
CAATGACTTCAAGTAAGATA+AGG + chr3_1:4038498-4038517 None:intergenic 30.0%
CTTATCTTACTTGAAGTCAT+TGG - chr3_1:4038496-4038515 Msa0345010:intron 30.0%
TCATATACTTGAGCTTGAAA+AGG - chr3_1:4038551-4038570 Msa0345010:three_prime_UTR 30.0%
! TATTCTTTGAATTGGCGTTT+TGG - chr3_1:4038639-4038658 Msa0345010:three_prime_UTR 30.0%
TCAAGATGATTTAGAAGGAA+AGG + chr3_1:4038764-4038783 None:intergenic 30.0%
ATATACTTACATGAACCCAT+TGG - chr3_1:4038841-4038860 Msa0345010:three_prime_UTR 30.0%
! TTGTGTGAGAGAAGTAATTT+TGG - chr3_1:4038911-4038930 Msa0345010:three_prime_UTR 30.0%
TTGTGAATTGCAGAAAATAG+AGG + chr3_1:4039120-4039139 None:intergenic 30.0%
CAATTCACAATTGACAAAAC+TGG - chr3_1:4039130-4039149 Msa0345010:intron 30.0%
AATAAGATATTGATGAGCAC+AGG + chr3_1:4039175-4039194 None:intergenic 30.0%
AAGATTTCATGATGGTACTA+CGG + chr3_1:4039275-4039294 None:intergenic 30.0%
GTAAAGCATGGAACAAAAAA+TGG - chr3_1:4039338-4039357 Msa0345010:three_prime_UTR 30.0%
! TCATTTTGTCTACTACAGTA+AGG - chr3_1:4039572-4039591 Msa0345010:intron 30.0%
ATTTCTCTTGTAAATAGGAC+CGG - chr3_1:4039963-4039982 Msa0345010:intron 30.0%
ACATCCATTCAAAGATATCT+TGG - chr3_1:4040195-4040214 Msa0345010:intron 30.0%
GTATCCAAGATATCTTTGAA+TGG + chr3_1:4040202-4040221 None:intergenic 30.0%
AAAAAAGCAAAACAAGTGTG+AGG + chr3_1:4040337-4040356 None:intergenic 30.0%
TTACAATTCCAAGAAAAGGA+GGG + chr3_1:4040625-4040644 None:intergenic 30.0%
TTTACAATTCCAAGAAAAGG+AGG + chr3_1:4040626-4040645 None:intergenic 30.0%
TTCAACAAACCACTCAAATT+TGG - chr3_1:4040669-4040688 Msa0345010:three_prime_UTR 30.0%
! TTTTGCAAACCAAATTTGAG+TGG + chr3_1:4040681-4040700 None:intergenic 30.0%
CTGAATTTCATTGACATAAC+AGG - chr3_1:4040737-4040756 Msa0345010:three_prime_UTR 30.0%
AGCAAAATCAACAAACTTAG+AGG + chr3_1:4040986-4041005 None:intergenic 30.0%
TCTATACATGTGATTTGAGT+TGG - chr3_1:4041016-4041035 Msa0345010:three_prime_UTR 30.0%
!! TGTGATTTGAGTTGGTAATT+TGG - chr3_1:4041024-4041043 Msa0345010:three_prime_UTR 30.0%
! GTTCCTCATTCTTAACATTT+TGG - chr3_1:4041069-4041088 Msa0345010:three_prime_UTR 30.0%
AGACCAAAATGTTAAGAATG+AGG + chr3_1:4041075-4041094 None:intergenic 30.0%
!! AACATTTTGGTCTATGAAAC+TGG - chr3_1:4041082-4041101 Msa0345010:three_prime_UTR 30.0%
ATGAAACTGGATTTCCATAT+TGG - chr3_1:4041095-4041114 Msa0345010:three_prime_UTR 30.0%
! GGAATATTTAATTTCGAGCA+CGG - chr3_1:4041116-4041135 Msa0345010:three_prime_UTR 30.0%
! TTTTCCCGATGTAGTAAATA+TGG - chr3_1:4041488-4041507 Msa0345010:CDS 30.0%
TAAGCCATATTTACTACATC+GGG + chr3_1:4041495-4041514 None:intergenic 30.0%
! TCATATCCATGCATTTTATC+AGG - chr3_1:4041671-4041690 Msa0345010:intron 30.0%
! CTTTTACCTGATAAAATGCA+TGG + chr3_1:4041680-4041699 None:intergenic 30.0%
! CATGCATTTTATCAGGTAAA+AGG - chr3_1:4041678-4041697 Msa0345010:intron 30.0%
CTGTTACATTAAAGATGTGT+TGG - chr3_1:4042108-4042127 Msa0345010:five_prime_UTR 30.0%
TTACATTAAAGATGTGTTGG+TGG - chr3_1:4042111-4042130 Msa0345010:five_prime_UTR 30.0%
!! AGATAACCTTTTGAAGACTT+GGG + chr3_1:4042225-4042244 None:intergenic 30.0%
!! TAGATAACCTTTTGAAGACT+TGG + chr3_1:4042226-4042245 None:intergenic 30.0%
TGAAAAACCAAAAGTTCAAG+TGG + chr3_1:4042365-4042384 None:intergenic 30.0%
GACAAAAGGGGTTATAGAAT+TGG + chr3_1:4037963-4037982 None:intergenic 35.0%
TATGCAGAACAAACCCAAAT+TGG + chr3_1:4038045-4038064 None:intergenic 35.0%
!! TGTGTTGTTCACTGTTTTAG+TGG - chr3_1:4038237-4038256 Msa0345010:three_prime_UTR 35.0%
TTTAGTGGTGGTAACAGTTA+TGG - chr3_1:4038252-4038271 Msa0345010:three_prime_UTR 35.0%
TTAGTGGTGGTAACAGTTAT+GGG - chr3_1:4038253-4038272 Msa0345010:three_prime_UTR 35.0%
AATCAGAACTCTTCAACCAT+TGG - chr3_1:4038336-4038355 Msa0345010:three_prime_UTR 35.0%
CATATAACAAGACCAGCAAA+AGG + chr3_1:4038409-4038428 None:intergenic 35.0%
!! GGTCTTGTTATATGTGTTAC+CGG - chr3_1:4038415-4038434 Msa0345010:intron 35.0%
!! TGTGTTACCGGTTTATCTAA+AGG - chr3_1:4038427-4038446 Msa0345010:intron 35.0%
ATCCACACCTTTAGATAAAC+CGG + chr3_1:4038437-4038456 None:intergenic 35.0%
!! AACATATAGCACAGTTTTGG+CGG - chr3_1:4039296-4039315 Msa0345010:intron 35.0%
TGGGGATAACAATATGAAGT+TGG - chr3_1:4039627-4039646 Msa0345010:three_prime_UTR 35.0%
TTGATTTCATGGATTCTTGC+AGG + chr3_1:4039700-4039719 None:intergenic 35.0%
GATGAGTATGCTTGATTTCA+TGG + chr3_1:4039711-4039730 None:intergenic 35.0%
GAAGAATTTCGAAGATTCTC+TGG - chr3_1:4039736-4039755 Msa0345010:intron 35.0%
TTCATCCGAATTGCAAAACA+AGG - chr3_1:4039825-4039844 Msa0345010:intron 35.0%
TTCTTATAAATAGGACCGGA+GGG + chr3_1:4039870-4039889 None:intergenic 35.0%
TTTCTTATAAATAGGACCGG+AGG + chr3_1:4039871-4039890 None:intergenic 35.0%
ATATTTATTGCTACTCCCTC+CGG + chr3_1:4039985-4040004 None:intergenic 35.0%
AGATGCTTTACATGTTCGAT+AGG - chr3_1:4040086-4040105 Msa0345010:three_prime_UTR 35.0%
TTAGTCATGTAGTCACTGAA+GGG - chr3_1:4040172-4040191 Msa0345010:intron 35.0%
! TGTTAGCATGTCTGTTGATT+TGG - chr3_1:4040531-4040550 Msa0345010:three_prime_UTR 35.0%
! TGATGCTTGATGACATTTCA+GGG - chr3_1:4040569-4040588 Msa0345010:three_prime_UTR 35.0%
! TTTTGTCTTTTCAGTGGAGT+TGG - chr3_1:4040914-4040933 Msa0345010:three_prime_UTR 35.0%
!! CTCTAAGACACACAATTACA+TGG + chr3_1:4040950-4040969 None:intergenic 35.0%
CATGTAATTGTGTGTCTTAG+AGG - chr3_1:4040948-4040967 Msa0345010:three_prime_UTR 35.0%
GATAACAAACTAAAGACAGG+TGG + chr3_1:4041146-4041165 None:intergenic 35.0%
AGAAGGTTATTGGGTGTAAT+CGG + chr3_1:4041261-4041280 None:intergenic 35.0%
ATAGAGTCCAGAAGGTTATT+GGG + chr3_1:4041270-4041289 None:intergenic 35.0%
CTCTATCTGTTGGTCAATAT+CGG - chr3_1:4041284-4041303 Msa0345010:three_prime_UTR 35.0%
ACTGAAAGAGTCTGTGTAAA+TGG + chr3_1:4041328-4041347 None:intergenic 35.0%
GAAAGGTTGTTCTCAATTTG+TGG - chr3_1:4041450-4041469 Msa0345010:CDS 35.0%
TGAAAAACGTTCTTGAGGAA+GGG + chr3_1:4041617-4041636 None:intergenic 35.0%
!! AGAACGTTTTTCAGCCATAA+CGG - chr3_1:4041624-4041643 Msa0345010:intron 35.0%
GAAGACATGTAAAACCGTTA+TGG + chr3_1:4041641-4041660 None:intergenic 35.0%
! TAACGGTTTTACATGTCTTC+AGG - chr3_1:4041641-4041660 Msa0345010:intron 35.0%
! TTTTACATGTCTTCAGGTGT+TGG - chr3_1:4041647-4041666 Msa0345010:intron 35.0%
TCATACAGATTCAAGACATG+CGG - chr3_1:4041856-4041875 Msa0345010:CDS 35.0%
TCGATCAGTTTACTCAAGTA+AGG - chr3_1:4041886-4041905 Msa0345010:CDS 35.0%
TTACTCAAGTAAGGAAACAG+CGG - chr3_1:4041895-4041914 Msa0345010:CDS 35.0%
GAGTTATTACTTAGGGCATA+AGG - chr3_1:4042019-4042038 Msa0345010:five_prime_UTR 35.0%
GGACTGTGAATACAAGAAAT+GGG - chr3_1:4042166-4042185 Msa0345010:five_prime_UTR 35.0%
GACTGTGAATACAAGAAATG+GGG - chr3_1:4042167-4042186 Msa0345010:five_prime_UTR 35.0%
ACTGTGAATACAAGAAATGG+GGG - chr3_1:4042168-4042187 Msa0345010:five_prime_UTR 35.0%
!! GATAACCTTTTGAAGACTTG+GGG + chr3_1:4042224-4042243 None:intergenic 35.0%
! TTACGAACCACTTGAACTTT+TGG - chr3_1:4042355-4042374 Msa0345010:five_prime_UTR 35.0%
AAAGGGGAATCTGGACAAAA+GGG + chr3_1:4037976-4037995 None:intergenic 40.0%
AAAAGGGGAATCTGGACAAA+AGG + chr3_1:4037977-4037996 None:intergenic 40.0%
AAAAGCTTCTCTTCATCACC+AGG + chr3_1:4038177-4038196 None:intergenic 40.0%
!!! GTTGTTCACTGTTTTAGTGG+TGG - chr3_1:4038240-4038259 Msa0345010:three_prime_UTR 40.0%
AGGATGAAACAGGAGACATT+TGG + chr3_1:4038363-4038382 None:intergenic 40.0%
!! TACCGGTTTATCTAAAGGTG+TGG - chr3_1:4038432-4038451 Msa0345010:intron 40.0%
TACATTGAGGATGCAGATTG+GGG + chr3_1:4038720-4038739 None:intergenic 40.0%
GTACATTGAGGATGCAGATT+GGG + chr3_1:4038721-4038740 None:intergenic 40.0%
AGTACATTGAGGATGCAGAT+TGG + chr3_1:4038722-4038741 None:intergenic 40.0%
GCATCCTCAATGTACTCATT+TGG - chr3_1:4038726-4038745 Msa0345010:intron 40.0%
TCCTCAATGTACTCATTTGG+TGG - chr3_1:4038729-4038748 Msa0345010:intron 40.0%
ACCACCAAATGAGTACATTG+AGG + chr3_1:4038733-4038752 None:intergenic 40.0%
AGTGTATCGCAGAACAATAG+TGG + chr3_1:4039028-4039047 None:intergenic 40.0%
CCATGATCATGGTTCATAAG+AGG + chr3_1:4039215-4039234 None:intergenic 40.0%
CCTCTTATGAACCATGATCA+TGG - chr3_1:4039212-4039231 Msa0345010:intron 40.0%
TTTGAGCATGCAGTAAAGCA+TGG - chr3_1:4039326-4039345 Msa0345010:intron 40.0%
GTGGATAGTGTCAGGAAAAA+TGG - chr3_1:4039389-4039408 Msa0345010:three_prime_UTR 40.0%
CTTGAAGTCATGCACTATAC+AGG - chr3_1:4039468-4039487 Msa0345010:intron 40.0%
AATATCACAAAAGCCGTGTC+AGG + chr3_1:4039496-4039515 None:intergenic 40.0%
! GATGATTTTAGACTGCTTCC+CGG - chr3_1:4039649-4039668 Msa0345010:three_prime_UTR 40.0%
! ATGATTTTAGACTGCTTCCC+GGG - chr3_1:4039650-4039669 Msa0345010:three_prime_UTR 40.0%
ATTTCCAGCATTTGTGTACC+CGG + chr3_1:4039671-4039690 None:intergenic 40.0%
TGCAGAGTCTAACAGAAGTT+TGG - chr3_1:4039759-4039778 Msa0345010:intron 40.0%
AGTTTGGACTCAAGTTTGTC+TGG - chr3_1:4039775-4039794 Msa0345010:intron 40.0%
TTTATGCGATATACTCCCTC+CGG - chr3_1:4039852-4039871 Msa0345010:intron 40.0%
CAGTTTCCTCTGTTTCAGTT+AGG - chr3_1:4040026-4040045 Msa0345010:three_prime_UTR 40.0%
!! ATCCAAAGAAGGTGCTAGTT+TGG - chr3_1:4040122-4040141 Msa0345010:intron 40.0%
CATTACAGCCAACAAACCAT+TGG + chr3_1:4040152-4040171 None:intergenic 40.0%
GTTAGTCATGTAGTCACTGA+AGG - chr3_1:4040171-4040190 Msa0345010:intron 40.0%
!! TAGAAGCACTCACTGTAATG+AGG + chr3_1:4040233-4040252 None:intergenic 40.0%
TGTCTTCCAGAAGATGTACA+GGG + chr3_1:4040374-4040393 None:intergenic 40.0%
ATGTCTTCCAGAAGATGTAC+AGG + chr3_1:4040375-4040394 None:intergenic 40.0%
ATGATATTTCTCAGCCAGTG+TGG - chr3_1:4040470-4040489 Msa0345010:three_prime_UTR 40.0%
GTGGATTCTCAAAACAGCTA+AGG - chr3_1:4040489-4040508 Msa0345010:three_prime_UTR 40.0%
CTAAGGAGAAACAAGTGCAA+AGG - chr3_1:4040506-4040525 Msa0345010:three_prime_UTR 40.0%
!! GTTGATTTGGCAAGACAAGT+TGG - chr3_1:4040544-4040563 Msa0345010:three_prime_UTR 40.0%
CTGAAATGTCATCAAGCATC+AGG + chr3_1:4040570-4040589 None:intergenic 40.0%
! CTGATGCTTGATGACATTTC+AGG - chr3_1:4040568-4040587 Msa0345010:three_prime_UTR 40.0%
CAAGAAAAGGAGGGAAATCT+AGG + chr3_1:4040616-4040635 None:intergenic 40.0%
! CTAGATTTCCCTCCTTTTCT+TGG - chr3_1:4040614-4040633 Msa0345010:three_prime_UTR 40.0%
CAAGAAAATGAGGGAAGTCT+AGG + chr3_1:4040707-4040726 None:intergenic 40.0%
AAAAGTCCATGACGATCTTC+AGG - chr3_1:4040773-4040792 Msa0345010:three_prime_UTR 40.0%
AAAGTCCATGACGATCTTCA+GGG - chr3_1:4040774-4040793 Msa0345010:three_prime_UTR 40.0%
CAGGGCAGTAAAAGTGAAAT+TGG - chr3_1:4040792-4040811 Msa0345010:three_prime_UTR 40.0%
CACTGAAAAGACAAAAGTGG+AGG + chr3_1:4040910-4040929 None:intergenic 40.0%
!! CTCCACTTTTGTCTTTTCAG+TGG - chr3_1:4040908-4040927 Msa0345010:three_prime_UTR 40.0%
CTCCACTGAAAAGACAAAAG+TGG + chr3_1:4040913-4040932 None:intergenic 40.0%
GATTACACCCAATAACCTTC+TGG - chr3_1:4041260-4041279 Msa0345010:three_prime_UTR 40.0%
GATAGAGTCCAGAAGGTTAT+TGG + chr3_1:4041271-4041290 None:intergenic 40.0%
GAGAACAACCTTTCTGTTAG+AGG + chr3_1:4041444-4041463 None:intergenic 40.0%
TTCTCAATTTGTGGCCTGAT+GGG - chr3_1:4041459-4041478 Msa0345010:CDS 40.0%
CGGGAAAAAATATACCCATC+AGG + chr3_1:4041476-4041495 None:intergenic 40.0%
! GGAAGAGTATGGTGAGAAAA+TGG + chr3_1:4041569-4041588 None:intergenic 40.0%
CTGAAAAACGTTCTTGAGGA+AGG + chr3_1:4041618-4041637 None:intergenic 40.0%
ATGGCTGAAAAACGTTCTTG+AGG + chr3_1:4041622-4041641 None:intergenic 40.0%
TCAGGTAAAAGGAAACTTGC+AGG - chr3_1:4041689-4041708 Msa0345010:intron 40.0%
TGTCGTCACTAATGAGACAA+TGG - chr3_1:4041777-4041796 Msa0345010:CDS 40.0%
CACTAATGAGACAATGGATG+TGG - chr3_1:4041783-4041802 Msa0345010:CDS 40.0%
! GATGTGGCGATTTTTGTGAT+AGG - chr3_1:4041799-4041818 Msa0345010:CDS 40.0%
GAATCGCCACATCTATTTCA+AGG + chr3_1:4041838-4041857 None:intergenic 40.0%
! TGGAACATGTCACTTGAGTA+GGG - chr3_1:4042131-4042150 Msa0345010:five_prime_UTR 40.0%
! GTATTCACAGTCCCCATTTT+GGG + chr3_1:4042159-4042178 None:intergenic 40.0%
! TGTATTCACAGTCCCCATTT+TGG + chr3_1:4042160-4042179 None:intergenic 40.0%
GGGACTGTGAATACAAGAAA+TGG - chr3_1:4042165-4042184 Msa0345010:five_prime_UTR 40.0%
GAATACAAGAAATGGGGGAT+TGG - chr3_1:4042173-4042192 Msa0345010:five_prime_UTR 40.0%
!! AAATGGGGGATTGGCTTATA+TGG - chr3_1:4042182-4042201 Msa0345010:five_prime_UTR 40.0%
TTACACCCCAAGTCTTCAAA+AGG - chr3_1:4042216-4042235 Msa0345010:intron 40.0%
TACACACCCAAGTCTTGAAA+AGG - chr3_1:4042258-4042277 Msa0345010:five_prime_UTR 40.0%
GAATATAGTGCAGTGGTGTG+AGG + chr3_1:4037862-4037881 None:intergenic 45.0%
GGAGTGTGCAGAAGAAGTAA+AGG + chr3_1:4037909-4037928 None:intergenic 45.0%
AAGGGGAATCTGGACAAAAG+GGG + chr3_1:4037975-4037994 None:intergenic 45.0%
GTAACAGTTATGGGTGGTGA+GGG - chr3_1:4038262-4038281 Msa0345010:three_prime_UTR 45.0%
TTGAAGTTGCGAGTGGCAAA+GGG - chr3_1:4038290-4038309 Msa0345010:three_prime_UTR 45.0%
ACAGGAGACATTTGGTCCAA+TGG + chr3_1:4038355-4038374 None:intergenic 45.0%
AATTGCGGAGAGGATGAAAC+AGG + chr3_1:4038373-4038392 None:intergenic 45.0%
! ATTTGATGGCAATTGCGGAG+AGG + chr3_1:4038383-4038402 None:intergenic 45.0%
! GGAGCATTTGATGGCAATTG+CGG + chr3_1:4038388-4038407 None:intergenic 45.0%
!! CCAGCAAAAGGAGCATTTGA+TGG + chr3_1:4038397-4038416 None:intergenic 45.0%
! CCATCAAATGCTCCTTTTGC+TGG - chr3_1:4038394-4038413 Msa0345010:intron 45.0%
TTTGGCAGAAGCAAGGAATC+AGG - chr3_1:4038657-4038676 Msa0345010:three_prime_UTR 45.0%
AGAAGCAAGGAATCAGGTCA+TGG - chr3_1:4038663-4038682 Msa0345010:intron 45.0%
ATGGAGGCTACAGAGAGATT+AGG - chr3_1:4038682-4038701 Msa0345010:intron 45.0%
CATCAGCATGATGCTGTAGT+AGG - chr3_1:4038804-4038823 Msa0345010:three_prime_UTR 45.0%
GCAAGCAACAACCATGATCA+TGG + chr3_1:4039226-4039245 None:intergenic 45.0%
ATCCATGCTGTGGAAACAGA+TGG + chr3_1:4039248-4039267 None:intergenic 45.0%
CTACGGAAATATCCATGCTG+TGG + chr3_1:4039258-4039277 None:intergenic 45.0%
AACCCAGTGTGACAACAAAG+AGG + chr3_1:4039364-4039383 None:intergenic 45.0%
! TCTTTGTTGTCACACTGGGT+TGG - chr3_1:4039363-4039382 Msa0345010:three_prime_UTR 45.0%
!! GTTGGTTTGTGGATAGTGTC+AGG - chr3_1:4039381-4039400 Msa0345010:three_prime_UTR 45.0%
CACTATACAGGAACCTGACA+CGG - chr3_1:4039480-4039499 Msa0345010:intron 45.0%
TTTCCAGCATTTGTGTACCC+GGG + chr3_1:4039670-4039689 None:intergenic 45.0%
AATGCCTGGATCAACGTAGA+TGG + chr3_1:4039806-4039825 None:intergenic 45.0%
TGCAATTCGGATGAAATGCC+TGG + chr3_1:4039820-4039839 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG - chr3_1:4039966-4039985 Msa0345010:intron 45.0%
CTCTTGTAAATAGGACCGGA+GGG - chr3_1:4039967-4039986 Msa0345010:intron 45.0%
! GCGTATGACTGAAGTGTTCT+CGG - chr3_1:4040052-4040071 Msa0345010:three_prime_UTR 45.0%
GCTGAAACTGCATCCAAAGA+AGG - chr3_1:4040111-4040130 Msa0345010:intron 45.0%
TGCCAAACTAGCACCTTCTT+TGG + chr3_1:4040127-4040146 None:intergenic 45.0%
! TTGGCAGACCAATGGTTTGT+TGG - chr3_1:4040141-4040160 Msa0345010:intron 45.0%
!!! GCTGTTTTGAGAATCCACAC+TGG + chr3_1:4040487-4040506 None:intergenic 45.0%
! GCTTGATGACATTTCAGGGA+AGG - chr3_1:4040573-4040592 Msa0345010:three_prime_UTR 45.0%
GGTTATTGGGTGTAATCGGA+CGG + chr3_1:4041257-4041276 None:intergenic 45.0%
ACCTTCTGGACTCTATCTGT+TGG - chr3_1:4041274-4041293 Msa0345010:three_prime_UTR 45.0%
ACCAACAGATAGAGTCCAGA+AGG + chr3_1:4041278-4041297 None:intergenic 45.0%
TGATGCAAAAGGGGATGAGA+AGG - chr3_1:4041386-4041405 Msa0345010:three_prime_UTR 45.0%
GTTCTCAATTTGTGGCCTGA+TGG - chr3_1:4041458-4041477 Msa0345010:CDS 45.0%
!! GCCTAGCCTTGAAATAGATG+TGG - chr3_1:4041829-4041848 Msa0345010:CDS 45.0%
GCCACATCTATTTCAAGGCT+AGG + chr3_1:4041833-4041852 None:intergenic 45.0%
! GTGGAACATGTCACTTGAGT+AGG - chr3_1:4042130-4042149 Msa0345010:five_prime_UTR 45.0%
! TTGAGTAGGGTGCCCAAAAT+GGG - chr3_1:4042144-4042163 Msa0345010:five_prime_UTR 45.0%
!!! AATATTAAAAATTGTTTTTT+TGG - chr3_1:4038083-4038102 Msa0345010:three_prime_UTR 5.0%
GAGAGGGTAAAAGGGGAATC+TGG + chr3_1:4037985-4038004 None:intergenic 50.0%
GTGGTGGTAACAGTTATGGG+TGG - chr3_1:4038256-4038275 Msa0345010:three_prime_UTR 50.0%
GGTAACAGTTATGGGTGGTG+AGG - chr3_1:4038261-4038280 Msa0345010:three_prime_UTR 50.0%
GGTAGAGTTGAAGTTGCGAG+TGG - chr3_1:4038283-4038302 Msa0345010:three_prime_UTR 50.0%
GTTGAAGTTGCGAGTGGCAA+AGG - chr3_1:4038289-4038308 Msa0345010:three_prime_UTR 50.0%
!! TTGGCGTTTTGGCAGAAGCA+AGG - chr3_1:4038650-4038669 Msa0345010:three_prime_UTR 50.0%
AGCAAGGAATCAGGTCATGG+AGG - chr3_1:4038666-4038685 Msa0345010:intron 50.0%
GAGGCTACAGAGAGATTAGG+TGG - chr3_1:4038685-4038704 Msa0345010:intron 50.0%
GATGCAGATTGGGGCTATAC+TGG + chr3_1:4038711-4038730 None:intergenic 50.0%
CAGCATGATGCTGTAGTAGG+AGG - chr3_1:4038807-4038826 Msa0345010:three_prime_UTR 50.0%
TGCCATCTGTTTCCACAGCA+TGG - chr3_1:4039243-4039262 Msa0345010:intron 50.0%
! TGGCCTCTTTGTTGTCACAC+TGG - chr3_1:4039358-4039377 Msa0345010:three_prime_UTR 50.0%
! GGCCTCTTTGTTGTCACACT+GGG - chr3_1:4039359-4039378 Msa0345010:three_prime_UTR 50.0%
!! TGTCACACTGGGTTGGTTTG+TGG - chr3_1:4039370-4039389 Msa0345010:three_prime_UTR 50.0%
TGCTCCATCTACGTTGATCC+AGG - chr3_1:4039799-4039818 Msa0345010:intron 50.0%
! CGCTAGCCTAACTGAAACAG+AGG + chr3_1:4040035-4040054 None:intergenic 50.0%
! GTGCTAGTTTGGCAGACCAA+TGG - chr3_1:4040133-4040152 Msa0345010:intron 50.0%
AACGGTCCCTGTACATCTTC+TGG - chr3_1:4040365-4040384 Msa0345010:intron 50.0%
TACTGCCCTGAAGATCGTCA+TGG + chr3_1:4040782-4040801 None:intergenic 50.0%
TTGGGTGTAATCGGACGGAT+CGG + chr3_1:4041252-4041271 None:intergenic 50.0%
CCTTTCTGTTAGAGGACGTG+TGG + chr3_1:4041436-4041455 None:intergenic 50.0%
CCACACGTCCTCTAACAGAA+AGG - chr3_1:4041433-4041452 Msa0345010:exon 50.0%
TCTCACCATACTCTTCCCTG+TGG - chr3_1:4041572-4041591 Msa0345010:intron 50.0%
CAGATTCAAGACATGCGGAC+AGG - chr3_1:4041861-4041880 Msa0345010:CDS 50.0%
GAAATGTTGAAGCGCGTGAG+TGG - chr3_1:4041974-4041993 Msa0345010:five_prime_UTR 50.0%
! CTTGAGTAGGGTGCCCAAAA+TGG - chr3_1:4042143-4042162 Msa0345010:five_prime_UTR 50.0%
! TGAGTAGGGTGCCCAAAATG+GGG - chr3_1:4042145-4042164 Msa0345010:five_prime_UTR 50.0%
GCTATAGCACTGCTGCACAG+CGG - chr3_1:4039082-4039101 Msa0345010:intron 55.0%
CTTCCCGGGTACACAAATGC+TGG - chr3_1:4039664-4039683 Msa0345010:three_prime_UTR 55.0%
! AATGGTGTCAGAAGTCGCCG+TGG - chr3_1:4040852-4040871 Msa0345010:three_prime_UTR 55.0%
TGACCTGCATTCGACGACCA+CGG + chr3_1:4040872-4040891 None:intergenic 55.0%
CCATACTCTTCCCTGTGGAC+CGG - chr3_1:4041577-4041596 Msa0345010:intron 55.0%
TCTCGGAAAACCGGTCCACA+GGG + chr3_1:4041590-4041609 None:intergenic 55.0%
ATCTCGGAAAACCGGTCCAC+AGG + chr3_1:4041591-4041610 None:intergenic 55.0%
!! GTGGACCGGTTTTCCGAGAT+CGG - chr3_1:4041591-4041610 Msa0345010:intron 55.0%
AAGGGCCGATCTCGGAAAAC+CGG + chr3_1:4041599-4041618 None:intergenic 55.0%
TCTTGAGGAAGGGCCGATCT+CGG + chr3_1:4041607-4041626 None:intergenic 55.0%
AGTAAGGAAACAGCGGAGCG+TGG - chr3_1:4041902-4041921 Msa0345010:CDS 55.0%
GTAAGGAAACAGCGGAGCGT+GGG - chr3_1:4041903-4041922 Msa0345010:CDS 55.0%
!! CGAGTGGCAAAGGGTGTTCG+AGG - chr3_1:4038299-4038318 Msa0345010:three_prime_UTR 60.0%
CCGGTCCACAGGGAAGAGTA+TGG + chr3_1:4041580-4041599 None:intergenic 60.0%
TCGCCGTGGTCGTCGAATGC+AGG - chr3_1:4040866-4040885 Msa0345010:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 4037806 4042411 4037806 ID=Msa0345010;Name=Msa0345010
chr3_1 mRNA 4037806 4042411 4037806 ID=Msa0345010-mRNA-1;Parent=Msa0345010;Name=Msa0345010-mRNA-1;_AED=0.03;_eAED=0.03;_QI=445|1|1|1|0.87|0.66|9|2398|98
chr3_1 exon 4037806 4038396 4037806 ID=Msa0345010-mRNA-1:exon:1333;Parent=Msa0345010-mRNA-1
chr3_1 exon 4038525 4038678 4038525 ID=Msa0345010-mRNA-1:exon:1332;Parent=Msa0345010-mRNA-1
chr3_1 exon 4038763 4038980 4038763 ID=Msa0345010-mRNA-1:exon:1331;Parent=Msa0345010-mRNA-1
chr3_1 exon 4039330 4039458 4039330 ID=Msa0345010-mRNA-1:exon:1330;Parent=Msa0345010-mRNA-1
chr3_1 exon 4039623 4039733 4039623 ID=Msa0345010-mRNA-1:exon:1329;Parent=Msa0345010-mRNA-1
chr3_1 exon 4039978 4040109 4039978 ID=Msa0345010-mRNA-1:exon:1328;Parent=Msa0345010-mRNA-1
chr3_1 exon 4040371 4041552 4040371 ID=Msa0345010-mRNA-1:exon:1327;Parent=Msa0345010-mRNA-1
chr3_1 exon 4041769 4042231 4041769 ID=Msa0345010-mRNA-1:exon:1326;Parent=Msa0345010-mRNA-1
chr3_1 exon 4042252 4042411 4042252 ID=Msa0345010-mRNA-1:exon:1325;Parent=Msa0345010-mRNA-1
chr3_1 five_prime_UTR 4042252 4042411 4042252 ID=Msa0345010-mRNA-1:five_prime_utr;Parent=Msa0345010-mRNA-1
chr3_1 five_prime_UTR 4041947 4042231 4041947 ID=Msa0345010-mRNA-1:five_prime_utr;Parent=Msa0345010-mRNA-1
chr3_1 CDS 4041769 4041946 4041769 ID=Msa0345010-mRNA-1:cds;Parent=Msa0345010-mRNA-1
chr3_1 CDS 4041434 4041552 4041434 ID=Msa0345010-mRNA-1:cds;Parent=Msa0345010-mRNA-1
chr3_1 three_prime_UTR 4040371 4041433 4040371 ID=Msa0345010-mRNA-1:three_prime_utr;Parent=Msa0345010-mRNA-1
chr3_1 three_prime_UTR 4039978 4040109 4039978 ID=Msa0345010-mRNA-1:three_prime_utr;Parent=Msa0345010-mRNA-1
chr3_1 three_prime_UTR 4039623 4039733 4039623 ID=Msa0345010-mRNA-1:three_prime_utr;Parent=Msa0345010-mRNA-1
chr3_1 three_prime_UTR 4039330 4039458 4039330 ID=Msa0345010-mRNA-1:three_prime_utr;Parent=Msa0345010-mRNA-1
chr3_1 three_prime_UTR 4038763 4038980 4038763 ID=Msa0345010-mRNA-1:three_prime_utr;Parent=Msa0345010-mRNA-1
chr3_1 three_prime_UTR 4038525 4038678 4038525 ID=Msa0345010-mRNA-1:three_prime_utr;Parent=Msa0345010-mRNA-1
chr3_1 three_prime_UTR 4037806 4038396 4037806 ID=Msa0345010-mRNA-1:three_prime_utr;Parent=Msa0345010-mRNA-1
Gene Sequence

>Msa0345010

ATGGGTGGTGAGGGTAGAGTTGAAGTTGCGAGTGGCAAAGGGTGTTCGAGGCTGTTTTCGTCTTCAATCAGAACTCTTCAACCATTGGACCAAATGTCTCCTGTTTCATCCTCTCCGCAATTGCCATCAAATGCTCCTTTTGCTGGTCTTGTTATATGTGTTACCGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATCTGCATCCTCAATGTACTCATTTGGTGGTTCAGATATCCTTTCCTTCTAAATCATCTTGA
Protein sequence

>Msa0345010

MGGEGRVEVASGKGCSRLFSSSIRTLQPLDQMSPVSSSPQLPSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQISFPSKSS*