AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0757180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0757180 MtrunA17_Chr5g0402501 91.075 549 36 2 1 539 1 546 0.0 969
Msa0757180 MtrunA17_Chr8g0374741 64.511 603 144 10 1 539 1 597 0.0 664
Msa0757180 MtrunA17_Chr3g0133631 50.276 543 219 16 25 537 47 568 2.72e-149 440
Msa0757180 MtrunA17_Chr1g0153951 50.460 543 214 14 33 536 18 544 4.95e-140 416
Msa0757180 MtrunA17_Chr4g0028651 30.664 587 311 16 33 537 121 693 6.13e-68 232
Msa0757180 MtrunA17_Chr5g0435281 30.601 549 283 14 33 537 15 509 3.41e-62 212
Msa0757180 MtrunA17_Chr8g0373901 24.466 609 352 16 10 537 39 620 3.59e-39 151
Msa0757180 MtrunA17_Chr5g0403231 23.609 593 363 11 12 537 49 618 4.20e-36 142
Msa0757180 MtrunA17_Chr5g0399331 25.091 550 334 13 24 536 66 574 1.10e-34 137
Msa0757180 MtrunA17_Chr4g0034351 26.531 343 208 6 232 537 277 612 2.66e-28 119
Msa0757180 MtrunA17_Chr3g0115381 28.358 201 126 6 299 487 520 714 9.47e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0757180 AT4G37080.2 54.424 599 197 12 6 539 23 610 0.0 565
Msa0757180 AT4G37080.3 54.424 599 197 12 6 539 23 610 0.0 565
Msa0757180 AT4G37080.1 54.622 595 194 12 10 539 14 597 0.0 563
Msa0757180 AT4G37080.4 51.200 500 168 12 6 440 23 511 3.59e-137 407
Msa0757180 AT5G42690.5 47.801 523 221 14 32 536 22 510 3.04e-129 387
Msa0757180 AT5G42690.2 47.801 523 221 14 32 536 49 537 7.26e-129 387
Msa0757180 AT5G42690.4 47.801 523 221 14 32 536 49 537 7.26e-129 387
Msa0757180 AT5G42690.1 47.893 522 221 14 32 536 49 536 9.62e-129 387
Msa0757180 AT5G42690.3 47.592 519 220 14 36 536 1 485 9.08e-127 380
Msa0757180 AT2G39690.2 37.383 321 169 7 249 537 96 416 2.07e-61 208
Msa0757180 AT2G39690.5 30.996 542 300 15 34 537 18 523 2.21e-61 211
Msa0757180 AT2G39690.4 31.262 531 291 15 45 537 3 497 3.22e-61 210
Msa0757180 AT2G39690.1 30.869 541 301 15 34 537 18 522 7.66e-61 209
Msa0757180 AT2G39690.8 31.132 530 292 15 45 537 3 496 1.05e-60 208
Msa0757180 AT3G12540.2 28.745 494 281 11 83 537 42 503 6.50e-59 204
Msa0757180 AT3G12540.1 27.698 556 312 14 31 537 56 570 7.57e-57 200
Msa0757180 AT5G60720.1 33.143 350 173 10 249 537 340 689 6.04e-49 180
Msa0757180 AT1G16750.1 35.769 260 145 5 295 536 271 526 6.89e-40 152
Msa0757180 AT5G47380.5 24.735 566 356 13 2 536 3 529 2.56e-38 148
Msa0757180 AT5G47380.1 25.141 533 332 12 35 536 89 585 3.65e-38 148
Msa0757180 AT5G47380.4 25.141 533 332 12 35 536 89 585 4.78e-38 148
Msa0757180 AT3G13000.3 25.439 570 312 18 35 536 49 573 6.70e-34 135
Msa0757180 AT3G13000.2 25.439 570 312 18 35 536 49 573 6.70e-34 135
Msa0757180 AT3G13000.1 25.439 570 312 18 35 536 20 544 6.84e-34 135
Msa0757180 AT2G23700.1 29.830 352 194 9 231 537 358 701 9.39e-32 130
Msa0757180 AT2G39690.6 28.668 443 244 14 34 440 18 424 4.68e-30 122
Msa0757180 AT2G39690.7 28.507 442 245 14 34 440 18 423 1.64e-29 121
Msa0757180 AT3G18900.5 29.814 322 174 11 245 537 227 525 6.58e-28 117
Msa0757180 AT3G18900.4 29.814 322 174 11 245 537 232 530 8.86e-28 117
Msa0757180 AT3G18900.6 29.874 318 179 11 245 537 151 449 2.18e-27 115
Msa0757180 AT3G18900.3 29.874 318 179 11 245 537 151 449 2.18e-27 115
Msa0757180 AT5G66600.7 23.363 565 344 15 35 537 17 554 2.84e-26 113
Msa0757180 AT5G66600.14 26.048 334 203 6 245 537 278 608 9.58e-26 112
Msa0757180 AT5G66600.1 26.048 334 203 6 245 537 278 608 9.58e-26 112
Msa0757180 AT5G66600.4 26.048 334 203 6 245 537 278 608 9.58e-26 112
Msa0757180 AT5G66600.9 26.048 334 203 6 245 537 278 608 9.58e-26 112
Msa0757180 AT5G66600.3 26.048 334 203 6 245 537 278 608 9.58e-26 112
Msa0757180 AT5G66600.2 26.048 334 203 6 245 537 258 588 1.29e-25 111
Msa0757180 AT1G76620.1 25.970 335 191 7 249 537 193 516 1.66e-25 110
Msa0757180 AT1G43020.1 27.036 307 186 11 248 538 151 435 2.11e-25 109
Msa0757180 AT5G47380.2 24.374 439 266 11 35 443 89 491 2.95e-22 100
Msa0757180 AT1G21060.1 26.562 320 193 7 249 539 199 505 3.45e-22 100
Msa0757180 AT1G21060.2 26.562 320 193 7 249 539 187 493 3.55e-22 100
Msa0757180 AT5G47380.3 23.908 435 265 11 35 439 89 487 1.14e-21 98.6
Msa0757180 AT2G39690.3 27.642 369 200 12 45 382 3 335 2.15e-21 96.7
Msa0757180 AT4G08550.1 25.911 247 156 8 301 533 402 635 7.72e-17 84.3
Msa0757180 AT4G08550.2 25.911 247 156 8 301 533 456 689 1.06e-16 84.0
Msa0757180 AT1G16750.2 38.776 98 60 0 283 380 259 356 5.98e-15 77.4
Msa0757180 AT3G11920.1 27.014 211 130 8 301 496 393 594 3.44e-13 72.8
Msa0757180 AT5G66600.12 25.738 237 135 4 245 440 278 514 3.78e-13 72.4
Msa0757180 AT5G66600.11 25.738 237 135 4 245 440 278 514 3.78e-13 72.4
Msa0757180 AT5G66600.6 25.738 237 135 4 245 440 278 514 3.78e-13 72.4
Msa0757180 AT5G66600.13 25.738 237 135 4 245 440 278 514 3.78e-13 72.4
Msa0757180 AT1G43020.3 25.728 206 123 8 248 439 151 340 1.92e-12 69.3
Msa0757180 AT3G18900.1 28.182 220 119 7 245 440 232 436 1.09e-11 67.4

Find 119 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGTTGTTTGTGAATTAT+TGG 0.137250 5_2:+11991739 Msa0757180:five_prime_UTR
GACATGTCCAGGTTCTTATT+TGG 0.182287 5_2:+11993866 Msa0757180:intron
TCCTAGATTGTCCTTGAATA+TGG 0.203016 5_2:-11993620 None:intergenic
GGACGATGTCTGTTTGTTTA+AGG 0.204288 5_2:-11991591 None:intergenic
TGCCCTATGATTTCAGTTTC+AGG 0.214439 5_2:+11995599 Msa0757180:CDS
ACCAGGAGAAACTTGCATTT+TGG 0.214979 5_2:+11993924 Msa0757180:CDS
ATGAAAGCAAGAGGCATATT+TGG 0.216429 5_2:+11994641 Msa0757180:CDS
TGGATCCTTTGATGGAATTC+TGG 0.239508 5_2:-11993121 None:intergenic
ATATCCTCTGAAACTCTATT+TGG 0.284459 5_2:-11993562 None:intergenic
CTTGGAATCTTTGTTGGATT+GGG 0.291306 5_2:+11995483 Msa0757180:CDS
CAAGTAATGTTTCCTTTGAT+AGG 0.299053 5_2:+11995767 Msa0757180:three_prime_UTR
GCTTGTGTAAAGTACCAATA+TGG 0.316724 5_2:-11991519 None:intergenic
ACATGTCCAGGTTCTTATTT+GGG 0.320441 5_2:+11993867 Msa0757180:intron
GAAATCTATTGAAAAGAAAA+TGG 0.326415 5_2:+11993298 Msa0757180:CDS
CTTTCTACTAGAAGCACTTC+TGG 0.332145 5_2:-11993216 None:intergenic
AGCAAGAGGCATATTTGGTT+TGG 0.336129 5_2:+11994646 Msa0757180:CDS
CTCTTCTGGTATTGAAGATA+AGG 0.350268 5_2:-11993276 None:intergenic
TGAAGATAAGGAGTCTTGTT+TGG 0.352746 5_2:-11993264 None:intergenic
TTTCAGACAAGGTTTATATC+AGG 0.354150 5_2:+11993043 Msa0757180:CDS
TTGTCATCATTATCCCATAT+TGG 0.354486 5_2:+11991505 None:intergenic
AGAGCACTCACTAGACCTTT+AGG 0.357274 5_2:+11992752 Msa0757180:CDS
TATGAGAATTTCCATATTCA+AGG 0.365612 5_2:+11993609 Msa0757180:CDS
TTGCTTGGTGATTTCTTCAC+TGG 0.366646 5_2:-11993335 None:intergenic
AGCAAAGAGAGATTATTTAC+AGG 0.366908 5_2:+11995381 Msa0757180:CDS
TTGATGTTTGGATCCTTTGA+TGG 0.368156 5_2:-11993129 None:intergenic
TCAACTGATTCTTGTTTGCT+TGG 0.368635 5_2:-11993350 None:intergenic
ATCAGTGCTACAACCATTTC+AGG 0.373611 5_2:-11994165 None:intergenic
AAAAGGAGGGAGCAGGAAAA+TGG 0.374679 5_2:+11992523 Msa0757180:CDS
ACCTCTCACTGGATTATTTG+TGG 0.376104 5_2:-11995659 None:intergenic
GCTGCCTTCCCCTTCTTTCA+AGG 0.376152 5_2:-11995552 None:intergenic
CAACCTGAAACTGAAATCAT+AGG 0.378498 5_2:-11995602 None:intergenic
ATATCGAAAACTAGAGATAT+TGG 0.379801 5_2:+11993685 Msa0757180:CDS
CAGAGCACACACCACTCTTC+AGG 0.383282 5_2:+11991894 Msa0757180:CDS
AAGCAGGAAAAGATGGAAAA+AGG 0.383928 5_2:+11992506 Msa0757180:intron
ACTTGGAATCTTTGTTGGAT+TGG 0.390859 5_2:+11995482 Msa0757180:CDS
TTTGGAATGGTCTGAACCTT+TGG 0.394809 5_2:+11994664 Msa0757180:CDS
TCCATATTCAAGGACAATCT+AGG 0.414001 5_2:+11993619 Msa0757180:CDS
AAAGGACTTGGAATCTTTGT+TGG 0.415429 5_2:+11995477 Msa0757180:CDS
TGTGGCTGAAGTTGCGGTAT+TGG 0.415617 5_2:+11992983 Msa0757180:CDS
AGGGCGTCGAGAAAGGAAAA+TGG 0.421258 5_2:+11992568 Msa0757180:CDS
GATATTGAACAGATACCATA+TGG 0.422044 5_2:-11993667 None:intergenic
GCTTCCTTTCTCAGTTCAAC+AGG 0.438309 5_2:-11995520 None:intergenic
TGCAGATCACGTGAAGTTGC+AGG 0.442494 5_2:+11993379 Msa0757180:CDS
TAACAATACTACAGCAGAAA+AGG 0.445312 5_2:-11991821 None:intergenic
TCCAAAATGCAAGTTTCTCC+TGG 0.448612 5_2:-11993925 None:intergenic
AAGAGAAATCTGAGGCCTAA+TGG 0.449344 5_2:-11993192 None:intergenic
ACAAAATTCATCAGACGATA+AGG 0.452744 5_2:+11993519 Msa0757180:CDS
ATAAGGTGTTAGAAGTTGAT+AGG 0.456293 5_2:+11993536 Msa0757180:CDS
AGCTTAATTCTACAACCATT+AGG 0.459006 5_2:+11993177 Msa0757180:CDS
AAGTAATGTTTCCTTTGATA+GGG 0.461447 5_2:+11995768 Msa0757180:three_prime_UTR
TCTAGTAGAAAGCTAGTCAA+TGG 0.462544 5_2:+11993227 Msa0757180:CDS
TGCAGGTTGATAAGTTAAAG+AGG 0.463381 5_2:+11992690 Msa0757180:intron
ACTTGCCTCTGTAAACTTGA+AGG 0.468658 5_2:+11993892 Msa0757180:CDS
CAGTTGAATGCCTTGAAAGA+AGG 0.473839 5_2:+11995542 Msa0757180:CDS
TTGCACTATCTTGTGGAAGC+TGG 0.481719 5_2:+11994693 Msa0757180:CDS
ATGTGCAAAGCAGGAAAAGA+TGG 0.484944 5_2:+11992499 Msa0757180:intron
ACTCGACTTTGCAAAGGACT+TGG 0.489476 5_2:+11995465 Msa0757180:CDS
TTGATGGAATTCTGGTCCAT+CGG 0.493905 5_2:-11993113 None:intergenic
GGTGGTTCGATTAGAAGAGA+AGG 0.495299 5_2:+11993013 Msa0757180:CDS
CTTACATGGGAAGGGAGATA+AGG 0.496981 5_2:-11992794 None:intergenic
TGATGGAATTCTGGTCCATC+GGG 0.498652 5_2:-11993112 None:intergenic
TATAGTACAATTCATGGAGC+GGG 0.499634 5_2:-11991692 None:intergenic
ACATTAACAGCACCTCTCAC+TGG 0.505947 5_2:-11995670 None:intergenic
GTTACATTTGCACTATCTTG+TGG 0.506373 5_2:+11994686 Msa0757180:CDS
AGTTGAATGCCTTGAAAGAA+GGG 0.509505 5_2:+11995543 Msa0757180:CDS
CTAGTAGAAAGCTAGTCAAT+GGG 0.511137 5_2:+11993228 Msa0757180:CDS
ACACCTCCACGTGATCCATA+TGG 0.511970 5_2:+11993652 Msa0757180:CDS
ACAACCATTTCAGGACTCTC+AGG 0.512777 5_2:-11994156 None:intergenic
GAGGCATATTTGGTTTGGAA+TGG 0.523893 5_2:+11994651 Msa0757180:CDS
GGGAGATAAGGAGGAAGACG+AGG 0.525815 5_2:-11992782 None:intergenic
GCTACCTGTTGAACTGAGAA+AGG 0.530299 5_2:+11995516 Msa0757180:CDS
TTTCATTCGGTTGAAATCAA+CGG 0.530335 5_2:-11993743 None:intergenic
CTTAATCTACTTACATGGGA+AGG 0.531642 5_2:-11992803 None:intergenic
GATTATTTACAGGCAGCAGT+TGG 0.534652 5_2:+11995391 Msa0757180:CDS
TTGCTTGTACACCAGTAACC+TGG 0.536984 5_2:+11995622 Msa0757180:exon
TAATTCCAAAGATACTTGAC+TGG 0.540269 5_2:+11995437 Msa0757180:CDS
CTTGTGTAAAGTACCAATAT+GGG 0.540704 5_2:-11991518 None:intergenic
GTATCTTACATTCATCATAC+AGG 0.540740 5_2:-11993963 None:intergenic
GGCTGAAGTTGCGGTATTGG+AGG 0.545349 5_2:+11992986 Msa0757180:CDS
CATACCTGAGAGTCCTGAAA+TGG 0.549579 5_2:+11994152 Msa0757180:CDS
TCGGTTGAAATCAACGGTGG+AGG 0.556026 5_2:-11993737 None:intergenic
ACTTTCATTAGTCATATATG+AGG 0.558308 5_2:+11991554 Msa0757180:five_prime_UTR
AACCTGAAACTGAAATCATA+GGG 0.561621 5_2:-11995601 None:intergenic
CGAAAATTCGATTGACCCGA+TGG 0.561722 5_2:+11993097 Msa0757180:CDS
TTGTAGGCATATTTAGAGCA+TGG 0.564337 5_2:+11994129 Msa0757180:intron
AGAGCTTGTGGCTGAAGTTG+CGG 0.570036 5_2:+11992977 Msa0757180:CDS
AAAAGTCAAAACCCTATCAA+AGG 0.572964 5_2:-11995779 None:intergenic
AGTTGCGGTATTGGAGGAAG+AGG 0.573287 5_2:+11992992 Msa0757180:CDS
AGACGAGGAAGTGCTCCTAA+AGG 0.579607 5_2:-11992767 None:intergenic
TCAGTTCAACAGGTAGCTGA+AGG 0.581607 5_2:-11995510 None:intergenic
ATATGTACCATGTGTGAAAG+AGG 0.585157 5_2:-11995574 None:intergenic
CTTGAAGGGTCTTACACACC+AGG 0.590715 5_2:+11993907 Msa0757180:CDS
CTTGCCTCTGTAAACTTGAA+GGG 0.594429 5_2:+11993893 Msa0757180:CDS
TGCGGTATTGGAGGAAGAGG+TGG 0.595764 5_2:+11992995 Msa0757180:CDS
AATGATGAGATGAAAGCAAG+AGG 0.596232 5_2:+11994632 Msa0757180:CDS
TTAATCTACTTACATGGGAA+GGG 0.597323 5_2:-11992802 None:intergenic
CAGATACCATATGGATCACG+TGG 0.601566 5_2:-11993658 None:intergenic
GACACCAAATAGAGTTTCAG+AGG 0.605334 5_2:+11993558 Msa0757180:CDS
CTGTCTACATTTCCTCCAAG+AGG 0.607010 5_2:+11993069 Msa0757180:CDS
CATGGTGAAAACAAATGAGA+AGG 0.607667 5_2:-11991612 None:intergenic
ATGGACCAGAATTCCATCAA+AGG 0.609091 5_2:+11993116 Msa0757180:CDS
TCAAAGGATCCAAACATCAA+AGG 0.609297 5_2:+11993132 Msa0757180:CDS
ATGCTTACTGCTAAGTGCGA+AGG 0.612958 5_2:-11995848 None:intergenic
GATAGTGCAAATGTAACCAA+AGG 0.614690 5_2:-11994680 None:intergenic
CATTCGGTTGAAATCAACGG+TGG 0.616978 5_2:-11993740 None:intergenic
TGGAAGCTGGTCATCACCTG+TGG 0.626198 5_2:+11994706 Msa0757180:CDS
TTATAGTACAATTCATGGAG+CGG 0.642892 5_2:-11991693 None:intergenic
ACATGGGAAGGGAGATAAGG+AGG 0.643159 5_2:-11992791 None:intergenic
TTGATTGATTACCTGAAGAG+TGG 0.645456 5_2:-11991905 None:intergenic
GTAATCTACAAAGCATAACA+AGG 0.653610 5_2:-11994549 None:intergenic
AAGGTTGTGAATTTCAGACA+AGG 0.655478 5_2:+11993032 Msa0757180:CDS
GGTTGTAGCACTGATGCAGA+AGG 0.659494 5_2:+11994173 Msa0757180:CDS
ACCACAAATAATCCAGTGAG+AGG 0.668723 5_2:+11995658 Msa0757180:three_prime_UTR
GTTGAATGCCTTGAAAGAAG+GGG 0.670351 5_2:+11995544 Msa0757180:CDS
AATGCCTTGAAAGAAGGGGA+AGG 0.676784 5_2:+11995548 Msa0757180:CDS
AAGGCAGCCTCTTTCACACA+TGG 0.686885 5_2:+11995567 Msa0757180:CDS
AAGACCCTTCAAGTTTACAG+AGG 0.702050 5_2:-11993897 None:intergenic
CTTCTGGCAAGAGAAATCTG+AGG 0.757425 5_2:-11993200 None:intergenic
ATACCATATGGATCACGTGG+AGG 0.760579 5_2:-11993655 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATCAATGTATTTATTA+AGG + chr5_2:11995267-11995286 Msa0757180:intron 10.0%
!! AAATAATACAAAAACAAAAA+AGG + chr5_2:11995926-11995945 Msa0757180:three_prime_UTR 10.0%
!! AATAATACAAAAACAAAAAA+GGG + chr5_2:11995927-11995946 Msa0757180:three_prime_UTR 10.0%
!! ATAAAGAGAAAGAAAAAAAT+AGG - chr5_2:11991963-11991982 None:intergenic 15.0%
!!! TATTTTTTTCTTTCTCTTTA+TGG + chr5_2:11991962-11991981 Msa0757180:intron 15.0%
!! GAAAAACAAATAAAGAAAAT+TGG - chr5_2:11991988-11992007 None:intergenic 15.0%
!! AATTGAGAAAAATAAGAAAT+TGG + chr5_2:11992293-11992312 Msa0757180:intron 15.0%
!! AATGCTTATCTAAATATAAT+TGG - chr5_2:11994351-11994370 None:intergenic 15.0%
!!! ACATTAACTATTTTCTTTTT+CGG + chr5_2:11994770-11994789 Msa0757180:intron 15.0%
!!! TATATATGAAAATTTGTTTC+AGG + chr5_2:11994852-11994871 Msa0757180:intron 15.0%
!!! ATATATGAAAATTTGTTTCA+GGG + chr5_2:11994853-11994872 Msa0757180:intron 15.0%
!!! ATCTATCATAAATTTGTTAT+CGG + chr5_2:11995053-11995072 Msa0757180:intron 15.0%
!!! ATTTTTATTTTATGAAGGTA+AGG + chr5_2:11995320-11995339 Msa0757180:intron 15.0%
!!! TTTTTATTTTATGAAGGTAA+GGG + chr5_2:11995321-11995340 Msa0757180:intron 15.0%
!! ATAATACAAAAACAAAAAAG+GGG + chr5_2:11995928-11995947 Msa0757180:three_prime_UTR 15.0%
!! AAAAAAAATATGGAAGAACA+TGG - chr5_2:11991633-11991652 None:intergenic 20.0%
!!! AGATTTTATAGTACAATTCA+TGG - chr5_2:11991701-11991720 None:intergenic 20.0%
!! ATCAAAATTCCTTCAAAAAA+CGG + chr5_2:11991923-11991942 Msa0757180:intron 20.0%
!!! TTTCTCATGTTTTTTTTTGT+TGG + chr5_2:11992057-11992076 Msa0757180:intron 20.0%
!!! CACATAATACTTTGAAAAAA+GGG + chr5_2:11992549-11992568 Msa0757180:CDS 20.0%
!! GAAATCTATTGAAAAGAAAA+TGG + chr5_2:11993298-11993317 Msa0757180:CDS 20.0%
!! ATCGATTAAAGTAAGTTATA+AGG + chr5_2:11993785-11993804 Msa0757180:intron 20.0%
!! TCGATTAAAGTAAGTTATAA+GGG + chr5_2:11993786-11993805 Msa0757180:intron 20.0%
!! ACAAGAAAAACTAAAAAAGT+TGG + chr5_2:11994017-11994036 Msa0757180:intron 20.0%
!! CAATTATTTGGTTATATTGT+AGG + chr5_2:11994113-11994132 Msa0757180:intron 20.0%
!!! ATTTTCATATATACTAGTCA+AGG - chr5_2:11994845-11994864 None:intergenic 20.0%
!!! TCTATCATAAATTTGTTATC+GGG + chr5_2:11995054-11995073 Msa0757180:intron 20.0%
!! AAAATTAGAAAAGTGGAAAT+TGG - chr5_2:11995198-11995217 None:intergenic 20.0%
!! ATAGTTATCATTCTTAATGT+GGG + chr5_2:11995237-11995256 Msa0757180:intron 20.0%
!!! AATGTATTTATTAAGGCATT+TGG + chr5_2:11995274-11995293 Msa0757180:intron 20.0%
!! TTACAGTCTGTAAAAAAAAA+AGG - chr5_2:11995822-11995841 None:intergenic 20.0%
!!! TTTTTTTACAGACTGTAATA+AGG + chr5_2:11995824-11995843 Msa0757180:three_prime_UTR 20.0%
!! TAATACAAAAACAAAAAAGG+GGG + chr5_2:11995929-11995948 Msa0757180:three_prime_UTR 20.0%
! ACTTTCATTAGTCATATATG+AGG + chr5_2:11991554-11991573 Msa0757180:five_prime_UTR 25.0%
!! TGTTTTTCTGTTTGATTGTA+AGG + chr5_2:11992000-11992019 Msa0757180:intron 25.0%
! AAGAAACAAATGACCATTTA+AGG + chr5_2:11992027-11992046 Msa0757180:intron 25.0%
!!! TAAGTGTTACTTTAACAGTT+AGG + chr5_2:11992336-11992355 Msa0757180:intron 25.0%
! AAATGAGAAAGAAAGATAGA+AGG - chr5_2:11992435-11992454 None:intergenic 25.0%
!! GCACATAATACTTTGAAAAA+AGG + chr5_2:11992548-11992567 Msa0757180:CDS 25.0%
! GTAGAACAATTAATAATGCA+AGG - chr5_2:11992624-11992643 None:intergenic 25.0%
! ATGCATTGAATACAATTGAT+CGG - chr5_2:11992863-11992882 None:intergenic 25.0%
! TCAATTGTATTCAATGCATT+TGG + chr5_2:11992864-11992883 Msa0757180:intron 25.0%
!! TTTTCAATAGATTTCTCTTC+TGG - chr5_2:11993293-11993312 None:intergenic 25.0%
! GCACATCAAATAGTAATTAT+TGG - chr5_2:11993418-11993437 None:intergenic 25.0%
! TATGAGAATTTCCATATTCA+AGG + chr5_2:11993609-11993628 Msa0757180:CDS 25.0%
! ATATCGAAAACTAGAGATAT+TGG + chr5_2:11993685-11993704 Msa0757180:CDS 25.0%
! AATCTCACAAAAACTATTGT+AGG - chr5_2:11993713-11993732 None:intergenic 25.0%
! CGATTAAAGTAAGTTATAAG+GGG + chr5_2:11993787-11993806 Msa0757180:intron 25.0%
! AGGTGTAGATTTATATTTGA+TGG + chr5_2:11994047-11994066 Msa0757180:intron 25.0%
! CTTACATAATTCAAGTGATA+AGG - chr5_2:11994474-11994493 None:intergenic 25.0%
! TAGATGAAAATATTGTTCTG+TGG + chr5_2:11994747-11994766 Msa0757180:intron 25.0%
! CATAGTTATCATTCTTAATG+TGG + chr5_2:11995236-11995255 Msa0757180:intron 25.0%
! AAGTAATGTTTCCTTTGATA+GGG + chr5_2:11995768-11995787 Msa0757180:three_prime_UTR 25.0%
! CTTGTGTAAAGTACCAATAT+GGG - chr5_2:11991521-11991540 None:intergenic 30.0%
TTATAGTACAATTCATGGAG+CGG - chr5_2:11991696-11991715 None:intergenic 30.0%
! CTCTGTTGTTTGTGAATTAT+TGG + chr5_2:11991739-11991758 Msa0757180:five_prime_UTR 30.0%
TAACAATACTACAGCAGAAA+AGG - chr5_2:11991824-11991843 None:intergenic 30.0%
!!! TTTCTTGTTTTGTGTGAAAG+TGG + chr5_2:11991859-11991878 Msa0757180:five_prime_UTR 30.0%
!!! AATAGTTTGCCGTTTTTTGA+AGG - chr5_2:11991935-11991954 None:intergenic 30.0%
! AAATGACCATTTAAGGTTGT+TGG + chr5_2:11992034-11992053 Msa0757180:intron 30.0%
!!! AACCACTTGGTTTTGAATAT+AGG + chr5_2:11992226-11992245 Msa0757180:intron 30.0%
AAGAACATAGTTCTCAGATT+TGG - chr5_2:11992377-11992396 None:intergenic 30.0%
TTAATCTACTTACATGGGAA+GGG - chr5_2:11992805-11992824 None:intergenic 30.0%
CTGACTTAATCTACTTACAT+GGG - chr5_2:11992810-11992829 None:intergenic 30.0%
! ACTGACTTAATCTACTTACA+TGG - chr5_2:11992811-11992830 None:intergenic 30.0%
! ATTTTAGACATTAGAGCTTG+TGG + chr5_2:11992965-11992984 Msa0757180:intron 30.0%
TTTCAGACAAGGTTTATATC+AGG + chr5_2:11993043-11993062 Msa0757180:CDS 30.0%
!! TGATTTTGACCTTTGATGTT+TGG - chr5_2:11993144-11993163 None:intergenic 30.0%
AGCTTAATTCTACAACCATT+AGG + chr5_2:11993177-11993196 Msa0757180:CDS 30.0%
!! TTTTGTTTCGATTAATCAGC+TGG + chr5_2:11993468-11993487 Msa0757180:intron 30.0%
ACAAAATTCATCAGACGATA+AGG + chr5_2:11993519-11993538 Msa0757180:CDS 30.0%
! ATAAGGTGTTAGAAGTTGAT+AGG + chr5_2:11993536-11993555 Msa0757180:CDS 30.0%
!! ATATCCTCTGAAACTCTATT+TGG - chr5_2:11993565-11993584 None:intergenic 30.0%
GATATTGAACAGATACCATA+TGG - chr5_2:11993670-11993689 None:intergenic 30.0%
TTTCATTCGGTTGAAATCAA+CGG - chr5_2:11993746-11993765 None:intergenic 30.0%
! GAAACGCTGAATTTTTCATT+CGG - chr5_2:11993759-11993778 None:intergenic 30.0%
GTATCTTACATTCATCATAC+AGG - chr5_2:11993966-11993985 None:intergenic 30.0%
TTGAGGTGACTACAATTATT+TGG + chr5_2:11994101-11994120 Msa0757180:intron 30.0%
! ATTGACATGAATGGATTTCT+TGG + chr5_2:11994307-11994326 Msa0757180:intron 30.0%
GTAATCTACAAAGCATAACA+AGG - chr5_2:11994552-11994571 None:intergenic 30.0%
!!! ATTTTTTGCAGCTTTTAGAC+AGG - chr5_2:11994615-11994634 None:intergenic 30.0%
GATGATCACATAAGACATTA+AGG - chr5_2:11994801-11994820 None:intergenic 30.0%
GCTGAGAATTGAAATAATCT+AGG + chr5_2:11994895-11994914 Msa0757180:intron 30.0%
! CAAGTTACAAGTCAGTTTTT+AGG - chr5_2:11994989-11995008 None:intergenic 30.0%
!! AAACTGACTTGTAACTTGTA+AGG + chr5_2:11994991-11995010 Msa0757180:intron 30.0%
GCTAGTGAAAATTAGAAAAG+TGG - chr5_2:11995205-11995224 None:intergenic 30.0%
! CTTTTCTAATTTTCACTAGC+AGG + chr5_2:11995205-11995224 Msa0757180:intron 30.0%
AGCAAAGAGAGATTATTTAC+AGG + chr5_2:11995381-11995400 Msa0757180:CDS 30.0%
TAATTCCAAAGATACTTGAC+TGG + chr5_2:11995437-11995456 Msa0757180:CDS 30.0%
AAAAACCAGTCAAGTATCTT+TGG - chr5_2:11995445-11995464 None:intergenic 30.0%
AACCTGAAACTGAAATCATA+GGG - chr5_2:11995604-11995623 None:intergenic 30.0%
! ATTTTTGAACTTTGATGTGC+TGG + chr5_2:11995706-11995725 Msa0757180:three_prime_UTR 30.0%
! ATGTGCTGGATTTTGTATAT+TGG + chr5_2:11995720-11995739 Msa0757180:three_prime_UTR 30.0%
CAAGTAATGTTTCCTTTGAT+AGG + chr5_2:11995767-11995786 Msa0757180:three_prime_UTR 30.0%
AAAAGTCAAAACCCTATCAA+AGG - chr5_2:11995782-11995801 None:intergenic 30.0%
! GACTTTTGTAAACTGCAATA+AGG + chr5_2:11995795-11995814 Msa0757180:three_prime_UTR 30.0%
! GCAGTAAGCATAGATTTTAT+AGG + chr5_2:11995860-11995879 Msa0757180:three_prime_UTR 30.0%
!!! TCATATTTTGATGCGATCAT+GGG - chr5_2:11995894-11995913 None:intergenic 30.0%
! GCTTGTGTAAAGTACCAATA+TGG - chr5_2:11991522-11991541 None:intergenic 35.0%
CATGGTGAAAACAAATGAGA+AGG - chr5_2:11991615-11991634 None:intergenic 35.0%
GCGGGAAAAAGAAGAAAAAA+TGG - chr5_2:11991677-11991696 None:intergenic 35.0%
TATAGTACAATTCATGGAGC+GGG - chr5_2:11991695-11991714 None:intergenic 35.0%
TTGATTGATTACCTGAAGAG+TGG - chr5_2:11991908-11991927 None:intergenic 35.0%
GAGAAACCAACAACCTTAAA+TGG - chr5_2:11992043-11992062 None:intergenic 35.0%
!!! TTTTTGTTGGTCTTACCCTT+CGG + chr5_2:11992070-11992089 Msa0757180:intron 35.0%
TGGAGATGATAAGTAAAGAC+TGG + chr5_2:11992119-11992138 Msa0757180:intron 35.0%
ACTACTTAAGTCTAACCACT+TGG + chr5_2:11992213-11992232 Msa0757180:intron 35.0%
AGCCTATATTCAAAACCAAG+TGG - chr5_2:11992231-11992250 None:intergenic 35.0%
GAGAAAGAAAGATAGAAGGA+AGG - chr5_2:11992431-11992450 None:intergenic 35.0%
AAGCAGGAAAAGATGGAAAA+AGG + chr5_2:11992506-11992525 Msa0757180:intron 35.0%
AGGAAAAGATGGAAAAAGGA+GGG + chr5_2:11992510-11992529 Msa0757180:intron 35.0%
!! TGCAGGTTGATAAGTTAAAG+AGG + chr5_2:11992690-11992709 Msa0757180:intron 35.0%
CTTAATCTACTTACATGGGA+AGG - chr5_2:11992806-11992825 None:intergenic 35.0%
AAGGTTGTGAATTTCAGACA+AGG + chr5_2:11993032-11993051 Msa0757180:CDS 35.0%
TTGATGTTTGGATCCTTTGA+TGG - chr5_2:11993132-11993151 None:intergenic 35.0%
TCAAAGGATCCAAACATCAA+AGG + chr5_2:11993132-11993151 Msa0757180:CDS 35.0%
TCTAGTAGAAAGCTAGTCAA+TGG + chr5_2:11993227-11993246 Msa0757180:CDS 35.0%
CTAGTAGAAAGCTAGTCAAT+GGG + chr5_2:11993228-11993247 Msa0757180:CDS 35.0%
!! TGAAGATAAGGAGTCTTGTT+TGG - chr5_2:11993267-11993286 None:intergenic 35.0%
! CTCTTCTGGTATTGAAGATA+AGG - chr5_2:11993279-11993298 None:intergenic 35.0%
! TCAACTGATTCTTGTTTGCT+TGG - chr5_2:11993353-11993372 None:intergenic 35.0%
TCCATATTCAAGGACAATCT+AGG + chr5_2:11993619-11993638 Msa0757180:CDS 35.0%
TCCTAGATTGTCCTTGAATA+TGG - chr5_2:11993623-11993642 None:intergenic 35.0%
! CTTTTTGCTGATGCTACATA+TGG + chr5_2:11993817-11993836 Msa0757180:intron 35.0%
CTAATCTAAAAGACATGTCC+AGG + chr5_2:11993855-11993874 Msa0757180:intron 35.0%
! ACATGTCCAGGTTCTTATTT+GGG + chr5_2:11993867-11993886 Msa0757180:intron 35.0%
AAGTTTCCCAAATAAGAACC+TGG - chr5_2:11993876-11993895 None:intergenic 35.0%
! CTAAAAAAGTTGGCTCTTTG+AGG + chr5_2:11994027-11994046 Msa0757180:intron 35.0%
TTTCCTTGCCTAATATGTTG+AGG + chr5_2:11994084-11994103 Msa0757180:intron 35.0%
TGTAGTCACCTCAACATATT+AGG - chr5_2:11994095-11994114 None:intergenic 35.0%
! TTGTAGGCATATTTAGAGCA+TGG + chr5_2:11994129-11994148 Msa0757180:intron 35.0%
CAAAAGCTGAGAACATTAGA+GGG - chr5_2:11994208-11994227 None:intergenic 35.0%
ACAAAAGCTGAGAACATTAG+AGG - chr5_2:11994209-11994228 None:intergenic 35.0%
GAAGCAAAGATGAATTGAGA+AGG - chr5_2:11994279-11994298 None:intergenic 35.0%
CCATTCATGTCAATATGTGA+TGG - chr5_2:11994301-11994320 None:intergenic 35.0%
CCATCACATATTGACATGAA+TGG + chr5_2:11994298-11994317 Msa0757180:intron 35.0%
!! CATTCGAGTTGACTAAAACT+TGG + chr5_2:11994367-11994386 Msa0757180:intron 35.0%
!! AACTTGGTAATGTTTGTGAC+AGG + chr5_2:11994383-11994402 Msa0757180:intron 35.0%
AATGATGAGATGAAAGCAAG+AGG + chr5_2:11994632-11994651 Msa0757180:CDS 35.0%
! ATGAAAGCAAGAGGCATATT+TGG + chr5_2:11994641-11994660 Msa0757180:CDS 35.0%
GATAGTGCAAATGTAACCAA+AGG - chr5_2:11994683-11994702 None:intergenic 35.0%
GTTACATTTGCACTATCTTG+TGG + chr5_2:11994686-11994705 Msa0757180:CDS 35.0%
TTGAGAAACAAACATACCAC+AGG - chr5_2:11994725-11994744 None:intergenic 35.0%
! TGTTTCAGGGTGTTATGTAA+TGG + chr5_2:11994866-11994885 Msa0757180:intron 35.0%
TTAGGTCATATCTCAAGTGA+AGG - chr5_2:11994971-11994990 None:intergenic 35.0%
!!! CTTATTTTGATCCTACAAGC+CGG + chr5_2:11995109-11995128 Msa0757180:intron 35.0%
CCTATGATACCAAACAAAAC+CGG - chr5_2:11995131-11995150 None:intergenic 35.0%
! AAGGCATTTGGTTGAATTGA+TGG + chr5_2:11995286-11995305 Msa0757180:intron 35.0%
! GTTTTTACTCGACTTTGCAA+AGG + chr5_2:11995459-11995478 Msa0757180:CDS 35.0%
AAAGGACTTGGAATCTTTGT+TGG + chr5_2:11995477-11995496 Msa0757180:CDS 35.0%
ACTTGGAATCTTTGTTGGAT+TGG + chr5_2:11995482-11995501 Msa0757180:CDS 35.0%
CTTGGAATCTTTGTTGGATT+GGG + chr5_2:11995483-11995502 Msa0757180:CDS 35.0%
AGTTGAATGCCTTGAAAGAA+GGG + chr5_2:11995543-11995562 Msa0757180:CDS 35.0%
ATATGTACCATGTGTGAAAG+AGG - chr5_2:11995577-11995596 None:intergenic 35.0%
CAACCTGAAACTGAAATCAT+AGG - chr5_2:11995605-11995624 None:intergenic 35.0%
!!! ACCAGTAACCTGGTTTTTTT+TGG + chr5_2:11995632-11995651 Msa0757180:exon 35.0%
TCCAAAAAAAACCAGGTTAC+TGG - chr5_2:11995636-11995655 None:intergenic 35.0%
!!! CTCATATTTTGATGCGATCA+TGG - chr5_2:11995895-11995914 None:intergenic 35.0%
ACAAAAACAAAAAAGGGGGT+TGG + chr5_2:11995933-11995952 Msa0757180:three_prime_UTR 35.0%
GGACGATGTCTGTTTGTTTA+AGG - chr5_2:11991594-11991613 None:intergenic 40.0%
AGTCTAAACTTGCGTACTTG+TGG + chr5_2:11992162-11992181 Msa0757180:intron 40.0%
TCTCACTTAATGTGCAAAGC+AGG + chr5_2:11992490-11992509 Msa0757180:intron 40.0%
ATGTGCAAAGCAGGAAAAGA+TGG + chr5_2:11992499-11992518 Msa0757180:intron 40.0%
CAGGAAAAGATGGAAAAAGG+AGG + chr5_2:11992509-11992528 Msa0757180:intron 40.0%
! TTATGCTGCTTGAAGTTTGC+AGG + chr5_2:11992673-11992692 Msa0757180:intron 40.0%
! CATCGGGTCAATCGAATTTT+CGG - chr5_2:11993099-11993118 None:intergenic 40.0%
TTGATGGAATTCTGGTCCAT+CGG - chr5_2:11993116-11993135 None:intergenic 40.0%
ATGGACCAGAATTCCATCAA+AGG + chr5_2:11993116-11993135 Msa0757180:CDS 40.0%
TGGATCCTTTGATGGAATTC+TGG - chr5_2:11993124-11993143 None:intergenic 40.0%
! AAGAGAAATCTGAGGCCTAA+TGG - chr5_2:11993195-11993214 None:intergenic 40.0%
!! CTTTCTACTAGAAGCACTTC+TGG - chr5_2:11993219-11993238 None:intergenic 40.0%
! TTGCTTGGTGATTTCTTCAC+TGG - chr5_2:11993338-11993357 None:intergenic 40.0%
GACACCAAATAGAGTTTCAG+AGG + chr5_2:11993558-11993577 Msa0757180:CDS 40.0%
GACATGTCCAGGTTCTTATT+TGG + chr5_2:11993866-11993885 Msa0757180:intron 40.0%
ACTTGCCTCTGTAAACTTGA+AGG + chr5_2:11993892-11993911 Msa0757180:CDS 40.0%
CTTGCCTCTGTAAACTTGAA+GGG + chr5_2:11993893-11993912 Msa0757180:CDS 40.0%
! AAGACCCTTCAAGTTTACAG+AGG - chr5_2:11993900-11993919 None:intergenic 40.0%
! ACCAGGAGAAACTTGCATTT+TGG + chr5_2:11993924-11993943 Msa0757180:CDS 40.0%
TCCAAAATGCAAGTTTCTCC+TGG - chr5_2:11993928-11993947 None:intergenic 40.0%
TCACCTCAACATATTAGGCA+AGG - chr5_2:11994090-11994109 None:intergenic 40.0%
ATCAGTGCTACAACCATTTC+AGG - chr5_2:11994168-11994187 None:intergenic 40.0%
! AGCAAGAGGCATATTTGGTT+TGG + chr5_2:11994646-11994665 Msa0757180:CDS 40.0%
!! GAGGCATATTTGGTTTGGAA+TGG + chr5_2:11994651-11994670 Msa0757180:CDS 40.0%
! TTTGGAATGGTCTGAACCTT+TGG + chr5_2:11994664-11994683 Msa0757180:CDS 40.0%
TCTCAAGTGAAGGTGAGATT+TGG - chr5_2:11994961-11994980 None:intergenic 40.0%
!! AAATTTGTTATCGGGCCACT+CGG + chr5_2:11995062-11995081 Msa0757180:intron 40.0%
ATTATCCAGCAAGGTACAGT+AGG + chr5_2:11995085-11995104 Msa0757180:intron 40.0%
TTATCCAGCAAGGTACAGTA+GGG + chr5_2:11995086-11995105 Msa0757180:intron 40.0%
!!! CCGGTTTTGTTTGGTATCAT+AGG + chr5_2:11995128-11995147 Msa0757180:intron 40.0%
GATTATTTACAGGCAGCAGT+TGG + chr5_2:11995391-11995410 Msa0757180:CDS 40.0%
CAGTTGAATGCCTTGAAAGA+AGG + chr5_2:11995542-11995561 Msa0757180:CDS 40.0%
GTTGAATGCCTTGAAAGAAG+GGG + chr5_2:11995544-11995563 Msa0757180:CDS 40.0%
TGCCCTATGATTTCAGTTTC+AGG + chr5_2:11995599-11995618 Msa0757180:CDS 40.0%
GTGGTTGTCCAAAAAAAACC+AGG - chr5_2:11995643-11995662 None:intergenic 40.0%
ACCACAAATAATCCAGTGAG+AGG + chr5_2:11995658-11995677 Msa0757180:three_prime_UTR 40.0%
ACCTCTCACTGGATTATTTG+TGG - chr5_2:11995662-11995681 None:intergenic 40.0%
ATTACGAGAGTCCGATTCCT+CGG - chr5_2:11992098-11992117 None:intergenic 45.0%
GGAATCGGACTCTCGTAATT+TGG + chr5_2:11992099-11992118 Msa0757180:intron 45.0%
AAAAGGAGGGAGCAGGAAAA+TGG + chr5_2:11992523-11992542 Msa0757180:CDS 45.0%
!! TGAAAAAAGGGCGTCGAGAA+AGG + chr5_2:11992561-11992580 Msa0757180:CDS 45.0%
! AGAGCACTCACTAGACCTTT+AGG + chr5_2:11992752-11992771 Msa0757180:CDS 45.0%
CTTACATGGGAAGGGAGATA+AGG - chr5_2:11992797-11992816 None:intergenic 45.0%
GGTGGTTCGATTAGAAGAGA+AGG + chr5_2:11993013-11993032 Msa0757180:CDS 45.0%
CTGTCTACATTTCCTCCAAG+AGG + chr5_2:11993069-11993088 Msa0757180:CDS 45.0%
! ATTTTCGGCATTCCTCTTGG+AGG - chr5_2:11993084-11993103 None:intergenic 45.0%
! CGAATTTTCGGCATTCCTCT+TGG - chr5_2:11993087-11993106 None:intergenic 45.0%
CGAAAATTCGATTGACCCGA+TGG + chr5_2:11993097-11993116 Msa0757180:CDS 45.0%
TGATGGAATTCTGGTCCATC+GGG - chr5_2:11993115-11993134 None:intergenic 45.0%
CTTCTGGCAAGAGAAATCTG+AGG - chr5_2:11993203-11993222 None:intergenic 45.0%
ATACCATATGGATCACGTGG+AGG - chr5_2:11993658-11993677 None:intergenic 45.0%
CAGATACCATATGGATCACG+TGG - chr5_2:11993661-11993680 None:intergenic 45.0%
CATTCGGTTGAAATCAACGG+TGG - chr5_2:11993743-11993762 None:intergenic 45.0%
CATACCTGAGAGTCCTGAAA+TGG + chr5_2:11994152-11994171 Msa0757180:CDS 45.0%
ACAACCATTTCAGGACTCTC+AGG - chr5_2:11994159-11994178 None:intergenic 45.0%
TGACAGGCCACAATAGTAGT+GGG + chr5_2:11994399-11994418 Msa0757180:intron 45.0%
! CTTTTAGACAGGTCTGTTGC+AGG - chr5_2:11994604-11994623 None:intergenic 45.0%
TTGCACTATCTTGTGGAAGC+TGG + chr5_2:11994693-11994712 Msa0757180:CDS 45.0%
AAGCGCTAAGCATAACTGTG+TGG + chr5_2:11994925-11994944 Msa0757180:intron 45.0%
!!! TCCTACAAGCCGGTTTTGTT+TGG + chr5_2:11995119-11995138 Msa0757180:intron 45.0%
!! ACCAAACAAAACCGGCTTGT+AGG - chr5_2:11995123-11995142 None:intergenic 45.0%
ACTCGACTTTGCAAAGGACT+TGG + chr5_2:11995465-11995484 Msa0757180:CDS 45.0%
TCAGTTCAACAGGTAGCTGA+AGG - chr5_2:11995513-11995532 None:intergenic 45.0%
GCTACCTGTTGAACTGAGAA+AGG + chr5_2:11995516-11995535 Msa0757180:CDS 45.0%
GCTTCCTTTCTCAGTTCAAC+AGG - chr5_2:11995523-11995542 None:intergenic 45.0%
AATGCCTTGAAAGAAGGGGA+AGG + chr5_2:11995548-11995567 Msa0757180:CDS 45.0%
TTGCTTGTACACCAGTAACC+TGG + chr5_2:11995622-11995641 Msa0757180:exon 45.0%
ACATTAACAGCACCTCTCAC+TGG - chr5_2:11995673-11995692 None:intergenic 45.0%
ATGCTTACTGCTAAGTGCGA+AGG - chr5_2:11995851-11995870 None:intergenic 45.0%
!! TACAAATAATAAAAAAAATA+TGG - chr5_2:11991643-11991662 None:intergenic 5.0%
!!! TATATATTTTTATTTTATGA+AGG + chr5_2:11995315-11995334 Msa0757180:intron 5.0%
TTACGAGAGTCCGATTCCTC+GGG - chr5_2:11992097-11992116 None:intergenic 50.0%
AGATGGAAAAAGGAGGGAGC+AGG + chr5_2:11992516-11992535 Msa0757180:CDS 50.0%
!! AGGGCGTCGAGAAAGGAAAA+TGG + chr5_2:11992568-11992587 Msa0757180:CDS 50.0%
!! AGACGAGGAAGTGCTCCTAA+AGG - chr5_2:11992770-11992789 None:intergenic 50.0%
ACATGGGAAGGGAGATAAGG+AGG - chr5_2:11992794-11992813 None:intergenic 50.0%
AGAGCTTGTGGCTGAAGTTG+CGG + chr5_2:11992977-11992996 Msa0757180:CDS 50.0%
TGTGGCTGAAGTTGCGGTAT+TGG + chr5_2:11992983-11993002 Msa0757180:CDS 50.0%
! AGTTGCGGTATTGGAGGAAG+AGG + chr5_2:11992992-11993011 Msa0757180:CDS 50.0%
TGCAGATCACGTGAAGTTGC+AGG + chr5_2:11993379-11993398 Msa0757180:CDS 50.0%
ACACCTCCACGTGATCCATA+TGG + chr5_2:11993652-11993671 Msa0757180:CDS 50.0%
TCGGTTGAAATCAACGGTGG+AGG - chr5_2:11993740-11993759 None:intergenic 50.0%
CTTGAAGGGTCTTACACACC+AGG + chr5_2:11993907-11993926 Msa0757180:CDS 50.0%
!! GGTTGTAGCACTGATGCAGA+AGG + chr5_2:11994173-11994192 Msa0757180:CDS 50.0%
GTGACAGGCCACAATAGTAG+TGG + chr5_2:11994398-11994417 Msa0757180:intron 50.0%
GACAGGCCACAATAGTAGTG+GGG + chr5_2:11994400-11994419 Msa0757180:intron 50.0%
ACAGGCCACAATAGTAGTGG+GGG + chr5_2:11994401-11994420 Msa0757180:intron 50.0%
ACCTTGCTGGATAATCCGAG+TGG - chr5_2:11995080-11995099 None:intergenic 50.0%
TAAGCCCTACTGTACCTTGC+TGG - chr5_2:11995093-11995112 None:intergenic 50.0%
AAGGCAGCCTCTTTCACACA+TGG + chr5_2:11995567-11995586 Msa0757180:CDS 50.0%
CAGAGCACACACCACTCTTC+AGG + chr5_2:11991894-11991913 Msa0757180:CDS 55.0%
GGGAGATAAGGAGGAAGACG+AGG - chr5_2:11992785-11992804 None:intergenic 55.0%
! GGCTGAAGTTGCGGTATTGG+AGG + chr5_2:11992986-11993005 Msa0757180:CDS 55.0%
! TGCGGTATTGGAGGAAGAGG+TGG + chr5_2:11992995-11993014 Msa0757180:CDS 55.0%
! CAGGCCACAATAGTAGTGGG+GGG + chr5_2:11994402-11994421 Msa0757180:intron 55.0%
GTGTCCCCCCACTACTATTG+TGG - chr5_2:11994409-11994428 None:intergenic 55.0%
TGGAAGCTGGTCATCACCTG+TGG + chr5_2:11994706-11994725 Msa0757180:CDS 55.0%
GCCACTCGGATTATCCAGCA+AGG + chr5_2:11995076-11995095 Msa0757180:intron 55.0%
GCTGCCTTCCCCTTCTTTCA+AGG - chr5_2:11995555-11995574 None:intergenic 55.0%
ACCCTTCGGTCCCGAGGAAT+CGG + chr5_2:11992084-11992103 Msa0757180:intron 60.0%
TCCGATTCCTCGGGACCGAA+GGG - chr5_2:11992088-11992107 None:intergenic 60.0%
AGTGGGGGGACACTTGCTCA+AGG + chr5_2:11994416-11994435 Msa0757180:intron 60.0%
GGTCTTACCCTTCGGTCCCG+AGG + chr5_2:11992078-11992097 Msa0757180:intron 65.0%
GTCCGATTCCTCGGGACCGA+AGG - chr5_2:11992089-11992108 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 11991512 11995957 11991512 ID=Msa0757180;Name=Msa0757180
chr5_2 mRNA 11991512 11995957 11991512 ID=Msa0757180-mRNA-1;Parent=Msa0757180;Name=Msa0757180-mRNA-1;_AED=0.18;_eAED=0.19;_QI=374|0.87|0.88|1|0.87|0.88|9|318|539
chr5_2 exon 11991512 11991915 11991512 ID=Msa0757180-mRNA-1:exon:5355;Parent=Msa0757180-mRNA-1
chr5_2 exon 11992512 11992604 11992512 ID=Msa0757180-mRNA-1:exon:5356;Parent=Msa0757180-mRNA-1
chr5_2 exon 11992695 11992811 11992695 ID=Msa0757180-mRNA-1:exon:5357;Parent=Msa0757180-mRNA-1
chr5_2 exon 11992972 11993400 11992972 ID=Msa0757180-mRNA-1:exon:5358;Parent=Msa0757180-mRNA-1
chr5_2 exon 11993487 11993794 11993487 ID=Msa0757180-mRNA-1:exon:5359;Parent=Msa0757180-mRNA-1
chr5_2 exon 11993877 11993976 11993877 ID=Msa0757180-mRNA-1:exon:5360;Parent=Msa0757180-mRNA-1
chr5_2 exon 11994135 11994194 11994135 ID=Msa0757180-mRNA-1:exon:5361;Parent=Msa0757180-mRNA-1
chr5_2 exon 11994548 11994727 11994548 ID=Msa0757180-mRNA-1:exon:5362;Parent=Msa0757180-mRNA-1
chr5_2 exon 11995337 11995957 11995337 ID=Msa0757180-mRNA-1:exon:5363;Parent=Msa0757180-mRNA-1
chr5_2 five_prime_UTR 11991512 11991885 11991512 ID=Msa0757180-mRNA-1:five_prime_utr;Parent=Msa0757180-mRNA-1
chr5_2 CDS 11991886 11991915 11991886 ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1
chr5_2 CDS 11992512 11992604 11992512 ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1
chr5_2 CDS 11992695 11992811 11992695 ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1
chr5_2 CDS 11992972 11993400 11992972 ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1
chr5_2 CDS 11993487 11993794 11993487 ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1
chr5_2 CDS 11993877 11993976 11993877 ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1
chr5_2 CDS 11994135 11994194 11994135 ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1
chr5_2 CDS 11994548 11994727 11994548 ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1
chr5_2 CDS 11995337 11995639 11995337 ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1
chr5_2 three_prime_UTR 11995640 11995957 11995640 ID=Msa0757180-mRNA-1:three_prime_utr;Parent=Msa0757180-mRNA-1
Gene Sequence

>Msa0757180

ATGAGTAGCAGAGCACACACCACTCTTCAGGAAAAGATGGAAAAAGGAGGGAGCAGGAAAATGGCTGCACATAATACTTTGAAAAAAGGGCGTCGAGAAAGGAAAATGGCTTTGATACAAGATGTTGATAAGTTAAAGAGGAAGCTAAGACATGAAGAGAATGTTCATAGAGTGTTAGAAAGAGCACTCACTAGACCTTTAGGAGCACTTCCTCGTCTTCCTCCTTATCTCCCTTCCCATACATTAGAGCTTGTGGCTGAAGTTGCGGTATTGGAGGAAGAGGTGGTTCGATTAGAAGAGAAGGTTGTGAATTTCAGACAAGGTTTATATCAGGAAGCTGTCTACATTTCCTCCAAGAGGAATGCCGAAAATTCGATTGACCCGATGGACCAGAATTCCATCAAAGGATCCAAACATCAAAGGTCAAAATCATTGTCTCAAAGTGAGCTTAATTCTACAACCATTAGGCCTCAGATTTCTCTTGCCAGAAGTGCTTCTAGTAGAAAGCTAGTCAATGGGAAGCAATTGCATTCCAAACAAGACTCCTTATCTTCAATACCAGAAGAGAAATCTATTGAAAAGAAAATGGCTAAAGTCATCACTCCAGTGAAGAAATCACCAAGCAAACAAGAATCAGTTGACAAGTGTGCAGATCACGTGAAGTTGCAGCTGGAGAAGAGATTAGTAGATCAAGAAAGAGCACAAAATTCATCAGACGATAAGGTGTTAGAAGTTGATAGGACACCAAATAGAGTTTCAGAGGATATAGTCAAGTGTTTGTGTAGCATATTTATGAGAATTTCCATATTCAAGGACAATCTAGGAGAATCGAAAACACCTCCACGTGATCCATATGGTATCTGTTCAATATCGAAAACTAGAGATATTGGTGCCTACAATAGTTTTTGTGAGATTGAAGCCTCCACCGTTGATTTCAACCGAATGAAAAATTCAGCGTTTCTCATCAATCGATTAAAGTTCTTATTTGGGAAACTTGCCTCTGTAAACTTGAAGGGTCTTACACACCAGGAGAAACTTGCATTTTGGATAAACACTTATAATTCCTGTATGATGAATGCATATTTAGAGCATGGCATACCTGAGAGTCCTGAAATGGTTGTAGCACTGATGCAGAAGTCCTTGTTATGCTTTGTAGATTACAATTCATCTCTTGATTTTCATCTTTGCTTCCTGCAACAGACCTGTCTAAAAGCTGCAAAAAATGATGAGATGAAAGCAAGAGGCATATTTGGTTTGGAATGGTCTGAACCTTTGGTTACATTTGCACTATCTTGTGGAAGCTGGTCATCACCTGTGGTAAGGGTGTACACAGCATCACAAGTTGATAATGAGTTAGAAGCAGCAAAGAGAGATTATTTACAGGCAGCAGTTGGCATTACAAAAACAAATAAGTTAATAATTCCAAAGATACTTGACTGGTTTTTACTCGACTTTGCAAAGGACTTGGAATCTTTGTTGGATTGGGTCTGCCTTCAGCTACCTGTTGAACTGAGAAAGGAAGCAGTTGAATGCCTTGAAAGAAGGGGAAGGCAGCCTCTTTCACACATGGTACATATGATGCCCTATGATTTCAGTTTCAGGTTGCTTGTACACCAGTAA

Protein sequence

>Msa0757180

MSSRAHTTLQEKMEKGGSRKMAAHNTLKKGRRERKMALIQDVDKLKRKLRHEENVHRVLERALTRPLGALPRLPPYLPSHTLELVAEVAVLEEEVVRLEEKVVNFRQGLYQEAVYISSKRNAENSIDPMDQNSIKGSKHQRSKSLSQSELNSTTIRPQISLARSASSRKLVNGKQLHSKQDSLSSIPEEKSIEKKMAKVITPVKKSPSKQESVDKCADHVKLQLEKRLVDQERAQNSSDDKVLEVDRTPNRVSEDIVKCLCSIFMRISIFKDNLGESKTPPRDPYGICSISKTRDIGAYNSFCEIEASTVDFNRMKNSAFLINRLKFLFGKLASVNLKGLTHQEKLAFWINTYNSCMMNAYLEHGIPESPEMVVALMQKSLLCFVDYNSSLDFHLCFLQQTCLKAAKNDEMKARGIFGLEWSEPLVTFALSCGSWSSPVVRVYTASQVDNELEAAKRDYLQAAVGITKTNKLIIPKILDWFLLDFAKDLESLLDWVCLQLPVELRKEAVECLERRGRQPLSHMVHMMPYDFSFRLLVHQ*