Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0757180 | XP_003611782.2 | 91.075 | 549 | 36 | 2 | 1 | 539 | 1 | 546 | 0.0 | 969 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0757180 | G7K815 | 91.075 | 549 | 36 | 2 | 1 | 539 | 1 | 546 | 0.0 | 969 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0036150 | Msa0757180 | 0.806150 | 9.457236e-50 | -8.615850e-47 |
Msa0046820 | Msa0757180 | 0.834646 | 2.657877e-56 | -8.615850e-47 |
Msa0715310 | Msa0757180 | 0.916799 | 1.152899e-85 | -8.615850e-47 |
Msa0725480 | Msa0757180 | -0.822253 | 2.615597e-53 | -8.615850e-47 |
Msa0748610 | Msa0757180 | 0.900508 | 6.832200e-78 | -8.615850e-47 |
Msa0757180 | Msa0757310 | 0.899873 | 1.287473e-77 | -8.615850e-47 |
Msa0757180 | Msa0766100 | -0.808832 | 2.551678e-50 | -8.615850e-47 |
Msa0757180 | Msa0790230 | 0.812574 | 3.959290e-51 | -8.615850e-47 |
Msa0757180 | Msa0792510 | 0.854812 | 9.592213e-62 | -8.615850e-47 |
Msa0757180 | Msa0836680 | 0.875520 | 2.888061e-68 | -8.615850e-47 |
Msa0757180 | Msa1004260 | 0.820125 | 8.089364e-53 | -8.615850e-47 |
Msa0757180 | Msa1008490 | 0.814703 | 1.345715e-51 | -8.615850e-47 |
Msa0757180 | Msa1018020 | -0.810411 | 1.168117e-50 | -8.615850e-47 |
Msa0757180 | Msa1018720 | 0.803920 | 2.768496e-49 | -8.615850e-47 |
Msa0757180 | Msa1036390 | 0.843681 | 1.206295e-58 | -8.615850e-47 |
Msa0757180 | Msa1046610 | 0.812088 | 5.055531e-51 | -8.615850e-47 |
Msa0757180 | Msa1076680 | 0.842476 | 2.527104e-58 | -8.615850e-47 |
Msa0757180 | Msa1114020 | 0.801889 | 7.277764e-49 | -8.615850e-47 |
Msa0757180 | Msa1123980 | -0.812925 | 3.316960e-51 | -8.615850e-47 |
Msa0757180 | Msa1125040 | 0.800197 | 1.613753e-48 | -8.615850e-47 |
Msa0757180 | Msa1261470 | 0.808897 | 2.470685e-50 | -8.615850e-47 |
Msa0757180 | Msa1271280 | 0.801223 | 9.964060e-49 | -8.615850e-47 |
Msa0757180 | Msa1304180 | 0.812511 | 4.086683e-51 | -8.615850e-47 |
Msa0757180 | Msa1373950 | 0.853358 | 2.518496e-61 | -8.615850e-47 |
Msa0757180 | Msa1400470 | 0.804871 | 1.754091e-49 | -8.615850e-47 |
Msa0757180 | Msa1460310 | -0.808687 | 2.740232e-50 | -8.615850e-47 |
Msa0121430 | Msa0757180 | 0.809272 | 2.053587e-50 | -8.615850e-47 |
Msa0138240 | Msa0757180 | 0.807176 | 5.742831e-50 | -8.615850e-47 |
Msa0175630 | Msa0757180 | 0.801198 | 1.008419e-48 | -8.615850e-47 |
Msa0185480 | Msa0757180 | 0.803748 | 3.006172e-49 | -8.615850e-47 |
Msa0208390 | Msa0757180 | 0.821552 | 3.800835e-53 | -8.615850e-47 |
Msa0382200 | Msa0757180 | 0.835055 | 2.096407e-56 | -8.615850e-47 |
Msa0416800 | Msa0757180 | 0.810083 | 1.374728e-50 | -8.615850e-47 |
Msa0431710 | Msa0757180 | 0.827500 | 1.512178e-54 | -8.615850e-47 |
Msa0463460 | Msa0757180 | 0.848908 | 4.541292e-60 | -8.615850e-47 |
Msa0254290 | Msa0757180 | 0.802361 | 5.818243e-49 | -8.615850e-47 |
Msa0264940 | Msa0757180 | -0.807885 | 4.062648e-50 | -8.615850e-47 |
Msa0269360 | Msa0757180 | 0.800590 | 1.341873e-48 | -8.615850e-47 |
Msa0298940 | Msa0757180 | 0.825261 | 5.161808e-54 | -8.615850e-47 |
Msa0298970 | Msa0757180 | 0.817026 | 4.082241e-52 | -8.615850e-47 |
Msa0302990 | Msa0757180 | -0.808669 | 2.764106e-50 | -8.615850e-47 |
Msa0345010 | Msa0757180 | 0.831503 | 1.608555e-55 | -8.615850e-47 |
Msa0509020 | Msa0757180 | 0.826609 | 2.469231e-54 | -8.615850e-47 |
Msa0520590 | Msa0757180 | 0.848365 | 6.420956e-60 | -8.615850e-47 |
Msa0557680 | Msa0757180 | 0.800714 | 1.265912e-48 | -8.615850e-47 |
Msa0574170 | Msa0757180 | 0.813522 | 2.452890e-51 | -8.615850e-47 |
Msa0575250 | Msa0757180 | 0.815590 | 8.551421e-52 | -8.615850e-47 |
Msa0591780 | Msa0757180 | 0.830981 | 2.162343e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0757180 | MtrunA17_Chr5g0402501 | 91.075 | 549 | 36 | 2 | 1 | 539 | 1 | 546 | 0.0 | 969 |
Msa0757180 | MtrunA17_Chr8g0374741 | 64.511 | 603 | 144 | 10 | 1 | 539 | 1 | 597 | 0.0 | 664 |
Msa0757180 | MtrunA17_Chr3g0133631 | 50.276 | 543 | 219 | 16 | 25 | 537 | 47 | 568 | 2.72e-149 | 440 |
Msa0757180 | MtrunA17_Chr1g0153951 | 50.460 | 543 | 214 | 14 | 33 | 536 | 18 | 544 | 4.95e-140 | 416 |
Msa0757180 | MtrunA17_Chr4g0028651 | 30.664 | 587 | 311 | 16 | 33 | 537 | 121 | 693 | 6.13e-68 | 232 |
Msa0757180 | MtrunA17_Chr5g0435281 | 30.601 | 549 | 283 | 14 | 33 | 537 | 15 | 509 | 3.41e-62 | 212 |
Msa0757180 | MtrunA17_Chr8g0373901 | 24.466 | 609 | 352 | 16 | 10 | 537 | 39 | 620 | 3.59e-39 | 151 |
Msa0757180 | MtrunA17_Chr5g0403231 | 23.609 | 593 | 363 | 11 | 12 | 537 | 49 | 618 | 4.20e-36 | 142 |
Msa0757180 | MtrunA17_Chr5g0399331 | 25.091 | 550 | 334 | 13 | 24 | 536 | 66 | 574 | 1.10e-34 | 137 |
Msa0757180 | MtrunA17_Chr4g0034351 | 26.531 | 343 | 208 | 6 | 232 | 537 | 277 | 612 | 2.66e-28 | 119 |
Msa0757180 | MtrunA17_Chr3g0115381 | 28.358 | 201 | 126 | 6 | 299 | 487 | 520 | 714 | 9.47e-15 | 77.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0757180 | AT4G37080.2 | 54.424 | 599 | 197 | 12 | 6 | 539 | 23 | 610 | 0.0 | 565 |
Msa0757180 | AT4G37080.3 | 54.424 | 599 | 197 | 12 | 6 | 539 | 23 | 610 | 0.0 | 565 |
Msa0757180 | AT4G37080.1 | 54.622 | 595 | 194 | 12 | 10 | 539 | 14 | 597 | 0.0 | 563 |
Msa0757180 | AT4G37080.4 | 51.200 | 500 | 168 | 12 | 6 | 440 | 23 | 511 | 3.59e-137 | 407 |
Msa0757180 | AT5G42690.5 | 47.801 | 523 | 221 | 14 | 32 | 536 | 22 | 510 | 3.04e-129 | 387 |
Msa0757180 | AT5G42690.2 | 47.801 | 523 | 221 | 14 | 32 | 536 | 49 | 537 | 7.26e-129 | 387 |
Msa0757180 | AT5G42690.4 | 47.801 | 523 | 221 | 14 | 32 | 536 | 49 | 537 | 7.26e-129 | 387 |
Msa0757180 | AT5G42690.1 | 47.893 | 522 | 221 | 14 | 32 | 536 | 49 | 536 | 9.62e-129 | 387 |
Msa0757180 | AT5G42690.3 | 47.592 | 519 | 220 | 14 | 36 | 536 | 1 | 485 | 9.08e-127 | 380 |
Msa0757180 | AT2G39690.2 | 37.383 | 321 | 169 | 7 | 249 | 537 | 96 | 416 | 2.07e-61 | 208 |
Msa0757180 | AT2G39690.5 | 30.996 | 542 | 300 | 15 | 34 | 537 | 18 | 523 | 2.21e-61 | 211 |
Msa0757180 | AT2G39690.4 | 31.262 | 531 | 291 | 15 | 45 | 537 | 3 | 497 | 3.22e-61 | 210 |
Msa0757180 | AT2G39690.1 | 30.869 | 541 | 301 | 15 | 34 | 537 | 18 | 522 | 7.66e-61 | 209 |
Msa0757180 | AT2G39690.8 | 31.132 | 530 | 292 | 15 | 45 | 537 | 3 | 496 | 1.05e-60 | 208 |
Msa0757180 | AT3G12540.2 | 28.745 | 494 | 281 | 11 | 83 | 537 | 42 | 503 | 6.50e-59 | 204 |
Msa0757180 | AT3G12540.1 | 27.698 | 556 | 312 | 14 | 31 | 537 | 56 | 570 | 7.57e-57 | 200 |
Msa0757180 | AT5G60720.1 | 33.143 | 350 | 173 | 10 | 249 | 537 | 340 | 689 | 6.04e-49 | 180 |
Msa0757180 | AT1G16750.1 | 35.769 | 260 | 145 | 5 | 295 | 536 | 271 | 526 | 6.89e-40 | 152 |
Msa0757180 | AT5G47380.5 | 24.735 | 566 | 356 | 13 | 2 | 536 | 3 | 529 | 2.56e-38 | 148 |
Msa0757180 | AT5G47380.1 | 25.141 | 533 | 332 | 12 | 35 | 536 | 89 | 585 | 3.65e-38 | 148 |
Msa0757180 | AT5G47380.4 | 25.141 | 533 | 332 | 12 | 35 | 536 | 89 | 585 | 4.78e-38 | 148 |
Msa0757180 | AT3G13000.3 | 25.439 | 570 | 312 | 18 | 35 | 536 | 49 | 573 | 6.70e-34 | 135 |
Msa0757180 | AT3G13000.2 | 25.439 | 570 | 312 | 18 | 35 | 536 | 49 | 573 | 6.70e-34 | 135 |
Msa0757180 | AT3G13000.1 | 25.439 | 570 | 312 | 18 | 35 | 536 | 20 | 544 | 6.84e-34 | 135 |
Msa0757180 | AT2G23700.1 | 29.830 | 352 | 194 | 9 | 231 | 537 | 358 | 701 | 9.39e-32 | 130 |
Msa0757180 | AT2G39690.6 | 28.668 | 443 | 244 | 14 | 34 | 440 | 18 | 424 | 4.68e-30 | 122 |
Msa0757180 | AT2G39690.7 | 28.507 | 442 | 245 | 14 | 34 | 440 | 18 | 423 | 1.64e-29 | 121 |
Msa0757180 | AT3G18900.5 | 29.814 | 322 | 174 | 11 | 245 | 537 | 227 | 525 | 6.58e-28 | 117 |
Msa0757180 | AT3G18900.4 | 29.814 | 322 | 174 | 11 | 245 | 537 | 232 | 530 | 8.86e-28 | 117 |
Msa0757180 | AT3G18900.6 | 29.874 | 318 | 179 | 11 | 245 | 537 | 151 | 449 | 2.18e-27 | 115 |
Msa0757180 | AT3G18900.3 | 29.874 | 318 | 179 | 11 | 245 | 537 | 151 | 449 | 2.18e-27 | 115 |
Msa0757180 | AT5G66600.7 | 23.363 | 565 | 344 | 15 | 35 | 537 | 17 | 554 | 2.84e-26 | 113 |
Msa0757180 | AT5G66600.14 | 26.048 | 334 | 203 | 6 | 245 | 537 | 278 | 608 | 9.58e-26 | 112 |
Msa0757180 | AT5G66600.1 | 26.048 | 334 | 203 | 6 | 245 | 537 | 278 | 608 | 9.58e-26 | 112 |
Msa0757180 | AT5G66600.4 | 26.048 | 334 | 203 | 6 | 245 | 537 | 278 | 608 | 9.58e-26 | 112 |
Msa0757180 | AT5G66600.9 | 26.048 | 334 | 203 | 6 | 245 | 537 | 278 | 608 | 9.58e-26 | 112 |
Msa0757180 | AT5G66600.3 | 26.048 | 334 | 203 | 6 | 245 | 537 | 278 | 608 | 9.58e-26 | 112 |
Msa0757180 | AT5G66600.2 | 26.048 | 334 | 203 | 6 | 245 | 537 | 258 | 588 | 1.29e-25 | 111 |
Msa0757180 | AT1G76620.1 | 25.970 | 335 | 191 | 7 | 249 | 537 | 193 | 516 | 1.66e-25 | 110 |
Msa0757180 | AT1G43020.1 | 27.036 | 307 | 186 | 11 | 248 | 538 | 151 | 435 | 2.11e-25 | 109 |
Msa0757180 | AT5G47380.2 | 24.374 | 439 | 266 | 11 | 35 | 443 | 89 | 491 | 2.95e-22 | 100 |
Msa0757180 | AT1G21060.1 | 26.562 | 320 | 193 | 7 | 249 | 539 | 199 | 505 | 3.45e-22 | 100 |
Msa0757180 | AT1G21060.2 | 26.562 | 320 | 193 | 7 | 249 | 539 | 187 | 493 | 3.55e-22 | 100 |
Msa0757180 | AT5G47380.3 | 23.908 | 435 | 265 | 11 | 35 | 439 | 89 | 487 | 1.14e-21 | 98.6 |
Msa0757180 | AT2G39690.3 | 27.642 | 369 | 200 | 12 | 45 | 382 | 3 | 335 | 2.15e-21 | 96.7 |
Msa0757180 | AT4G08550.1 | 25.911 | 247 | 156 | 8 | 301 | 533 | 402 | 635 | 7.72e-17 | 84.3 |
Msa0757180 | AT4G08550.2 | 25.911 | 247 | 156 | 8 | 301 | 533 | 456 | 689 | 1.06e-16 | 84.0 |
Msa0757180 | AT1G16750.2 | 38.776 | 98 | 60 | 0 | 283 | 380 | 259 | 356 | 5.98e-15 | 77.4 |
Msa0757180 | AT3G11920.1 | 27.014 | 211 | 130 | 8 | 301 | 496 | 393 | 594 | 3.44e-13 | 72.8 |
Msa0757180 | AT5G66600.12 | 25.738 | 237 | 135 | 4 | 245 | 440 | 278 | 514 | 3.78e-13 | 72.4 |
Msa0757180 | AT5G66600.11 | 25.738 | 237 | 135 | 4 | 245 | 440 | 278 | 514 | 3.78e-13 | 72.4 |
Msa0757180 | AT5G66600.6 | 25.738 | 237 | 135 | 4 | 245 | 440 | 278 | 514 | 3.78e-13 | 72.4 |
Msa0757180 | AT5G66600.13 | 25.738 | 237 | 135 | 4 | 245 | 440 | 278 | 514 | 3.78e-13 | 72.4 |
Msa0757180 | AT1G43020.3 | 25.728 | 206 | 123 | 8 | 248 | 439 | 151 | 340 | 1.92e-12 | 69.3 |
Msa0757180 | AT3G18900.1 | 28.182 | 220 | 119 | 7 | 245 | 440 | 232 | 436 | 1.09e-11 | 67.4 |
Find 119 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTGTTGTTTGTGAATTAT+TGG | 0.137250 | 5_2:+11991739 | Msa0757180:five_prime_UTR |
GACATGTCCAGGTTCTTATT+TGG | 0.182287 | 5_2:+11993866 | Msa0757180:intron |
TCCTAGATTGTCCTTGAATA+TGG | 0.203016 | 5_2:-11993620 | None:intergenic |
GGACGATGTCTGTTTGTTTA+AGG | 0.204288 | 5_2:-11991591 | None:intergenic |
TGCCCTATGATTTCAGTTTC+AGG | 0.214439 | 5_2:+11995599 | Msa0757180:CDS |
ACCAGGAGAAACTTGCATTT+TGG | 0.214979 | 5_2:+11993924 | Msa0757180:CDS |
ATGAAAGCAAGAGGCATATT+TGG | 0.216429 | 5_2:+11994641 | Msa0757180:CDS |
TGGATCCTTTGATGGAATTC+TGG | 0.239508 | 5_2:-11993121 | None:intergenic |
ATATCCTCTGAAACTCTATT+TGG | 0.284459 | 5_2:-11993562 | None:intergenic |
CTTGGAATCTTTGTTGGATT+GGG | 0.291306 | 5_2:+11995483 | Msa0757180:CDS |
CAAGTAATGTTTCCTTTGAT+AGG | 0.299053 | 5_2:+11995767 | Msa0757180:three_prime_UTR |
GCTTGTGTAAAGTACCAATA+TGG | 0.316724 | 5_2:-11991519 | None:intergenic |
ACATGTCCAGGTTCTTATTT+GGG | 0.320441 | 5_2:+11993867 | Msa0757180:intron |
GAAATCTATTGAAAAGAAAA+TGG | 0.326415 | 5_2:+11993298 | Msa0757180:CDS |
CTTTCTACTAGAAGCACTTC+TGG | 0.332145 | 5_2:-11993216 | None:intergenic |
AGCAAGAGGCATATTTGGTT+TGG | 0.336129 | 5_2:+11994646 | Msa0757180:CDS |
CTCTTCTGGTATTGAAGATA+AGG | 0.350268 | 5_2:-11993276 | None:intergenic |
TGAAGATAAGGAGTCTTGTT+TGG | 0.352746 | 5_2:-11993264 | None:intergenic |
TTTCAGACAAGGTTTATATC+AGG | 0.354150 | 5_2:+11993043 | Msa0757180:CDS |
TTGTCATCATTATCCCATAT+TGG | 0.354486 | 5_2:+11991505 | None:intergenic |
AGAGCACTCACTAGACCTTT+AGG | 0.357274 | 5_2:+11992752 | Msa0757180:CDS |
TATGAGAATTTCCATATTCA+AGG | 0.365612 | 5_2:+11993609 | Msa0757180:CDS |
TTGCTTGGTGATTTCTTCAC+TGG | 0.366646 | 5_2:-11993335 | None:intergenic |
AGCAAAGAGAGATTATTTAC+AGG | 0.366908 | 5_2:+11995381 | Msa0757180:CDS |
TTGATGTTTGGATCCTTTGA+TGG | 0.368156 | 5_2:-11993129 | None:intergenic |
TCAACTGATTCTTGTTTGCT+TGG | 0.368635 | 5_2:-11993350 | None:intergenic |
ATCAGTGCTACAACCATTTC+AGG | 0.373611 | 5_2:-11994165 | None:intergenic |
AAAAGGAGGGAGCAGGAAAA+TGG | 0.374679 | 5_2:+11992523 | Msa0757180:CDS |
ACCTCTCACTGGATTATTTG+TGG | 0.376104 | 5_2:-11995659 | None:intergenic |
GCTGCCTTCCCCTTCTTTCA+AGG | 0.376152 | 5_2:-11995552 | None:intergenic |
CAACCTGAAACTGAAATCAT+AGG | 0.378498 | 5_2:-11995602 | None:intergenic |
ATATCGAAAACTAGAGATAT+TGG | 0.379801 | 5_2:+11993685 | Msa0757180:CDS |
CAGAGCACACACCACTCTTC+AGG | 0.383282 | 5_2:+11991894 | Msa0757180:CDS |
AAGCAGGAAAAGATGGAAAA+AGG | 0.383928 | 5_2:+11992506 | Msa0757180:intron |
ACTTGGAATCTTTGTTGGAT+TGG | 0.390859 | 5_2:+11995482 | Msa0757180:CDS |
TTTGGAATGGTCTGAACCTT+TGG | 0.394809 | 5_2:+11994664 | Msa0757180:CDS |
TCCATATTCAAGGACAATCT+AGG | 0.414001 | 5_2:+11993619 | Msa0757180:CDS |
AAAGGACTTGGAATCTTTGT+TGG | 0.415429 | 5_2:+11995477 | Msa0757180:CDS |
TGTGGCTGAAGTTGCGGTAT+TGG | 0.415617 | 5_2:+11992983 | Msa0757180:CDS |
AGGGCGTCGAGAAAGGAAAA+TGG | 0.421258 | 5_2:+11992568 | Msa0757180:CDS |
GATATTGAACAGATACCATA+TGG | 0.422044 | 5_2:-11993667 | None:intergenic |
GCTTCCTTTCTCAGTTCAAC+AGG | 0.438309 | 5_2:-11995520 | None:intergenic |
TGCAGATCACGTGAAGTTGC+AGG | 0.442494 | 5_2:+11993379 | Msa0757180:CDS |
TAACAATACTACAGCAGAAA+AGG | 0.445312 | 5_2:-11991821 | None:intergenic |
TCCAAAATGCAAGTTTCTCC+TGG | 0.448612 | 5_2:-11993925 | None:intergenic |
AAGAGAAATCTGAGGCCTAA+TGG | 0.449344 | 5_2:-11993192 | None:intergenic |
ACAAAATTCATCAGACGATA+AGG | 0.452744 | 5_2:+11993519 | Msa0757180:CDS |
ATAAGGTGTTAGAAGTTGAT+AGG | 0.456293 | 5_2:+11993536 | Msa0757180:CDS |
AGCTTAATTCTACAACCATT+AGG | 0.459006 | 5_2:+11993177 | Msa0757180:CDS |
AAGTAATGTTTCCTTTGATA+GGG | 0.461447 | 5_2:+11995768 | Msa0757180:three_prime_UTR |
TCTAGTAGAAAGCTAGTCAA+TGG | 0.462544 | 5_2:+11993227 | Msa0757180:CDS |
TGCAGGTTGATAAGTTAAAG+AGG | 0.463381 | 5_2:+11992690 | Msa0757180:intron |
ACTTGCCTCTGTAAACTTGA+AGG | 0.468658 | 5_2:+11993892 | Msa0757180:CDS |
CAGTTGAATGCCTTGAAAGA+AGG | 0.473839 | 5_2:+11995542 | Msa0757180:CDS |
TTGCACTATCTTGTGGAAGC+TGG | 0.481719 | 5_2:+11994693 | Msa0757180:CDS |
ATGTGCAAAGCAGGAAAAGA+TGG | 0.484944 | 5_2:+11992499 | Msa0757180:intron |
ACTCGACTTTGCAAAGGACT+TGG | 0.489476 | 5_2:+11995465 | Msa0757180:CDS |
TTGATGGAATTCTGGTCCAT+CGG | 0.493905 | 5_2:-11993113 | None:intergenic |
GGTGGTTCGATTAGAAGAGA+AGG | 0.495299 | 5_2:+11993013 | Msa0757180:CDS |
CTTACATGGGAAGGGAGATA+AGG | 0.496981 | 5_2:-11992794 | None:intergenic |
TGATGGAATTCTGGTCCATC+GGG | 0.498652 | 5_2:-11993112 | None:intergenic |
TATAGTACAATTCATGGAGC+GGG | 0.499634 | 5_2:-11991692 | None:intergenic |
ACATTAACAGCACCTCTCAC+TGG | 0.505947 | 5_2:-11995670 | None:intergenic |
GTTACATTTGCACTATCTTG+TGG | 0.506373 | 5_2:+11994686 | Msa0757180:CDS |
AGTTGAATGCCTTGAAAGAA+GGG | 0.509505 | 5_2:+11995543 | Msa0757180:CDS |
CTAGTAGAAAGCTAGTCAAT+GGG | 0.511137 | 5_2:+11993228 | Msa0757180:CDS |
ACACCTCCACGTGATCCATA+TGG | 0.511970 | 5_2:+11993652 | Msa0757180:CDS |
ACAACCATTTCAGGACTCTC+AGG | 0.512777 | 5_2:-11994156 | None:intergenic |
GAGGCATATTTGGTTTGGAA+TGG | 0.523893 | 5_2:+11994651 | Msa0757180:CDS |
GGGAGATAAGGAGGAAGACG+AGG | 0.525815 | 5_2:-11992782 | None:intergenic |
GCTACCTGTTGAACTGAGAA+AGG | 0.530299 | 5_2:+11995516 | Msa0757180:CDS |
TTTCATTCGGTTGAAATCAA+CGG | 0.530335 | 5_2:-11993743 | None:intergenic |
CTTAATCTACTTACATGGGA+AGG | 0.531642 | 5_2:-11992803 | None:intergenic |
GATTATTTACAGGCAGCAGT+TGG | 0.534652 | 5_2:+11995391 | Msa0757180:CDS |
TTGCTTGTACACCAGTAACC+TGG | 0.536984 | 5_2:+11995622 | Msa0757180:exon |
TAATTCCAAAGATACTTGAC+TGG | 0.540269 | 5_2:+11995437 | Msa0757180:CDS |
CTTGTGTAAAGTACCAATAT+GGG | 0.540704 | 5_2:-11991518 | None:intergenic |
GTATCTTACATTCATCATAC+AGG | 0.540740 | 5_2:-11993963 | None:intergenic |
GGCTGAAGTTGCGGTATTGG+AGG | 0.545349 | 5_2:+11992986 | Msa0757180:CDS |
CATACCTGAGAGTCCTGAAA+TGG | 0.549579 | 5_2:+11994152 | Msa0757180:CDS |
TCGGTTGAAATCAACGGTGG+AGG | 0.556026 | 5_2:-11993737 | None:intergenic |
ACTTTCATTAGTCATATATG+AGG | 0.558308 | 5_2:+11991554 | Msa0757180:five_prime_UTR |
AACCTGAAACTGAAATCATA+GGG | 0.561621 | 5_2:-11995601 | None:intergenic |
CGAAAATTCGATTGACCCGA+TGG | 0.561722 | 5_2:+11993097 | Msa0757180:CDS |
TTGTAGGCATATTTAGAGCA+TGG | 0.564337 | 5_2:+11994129 | Msa0757180:intron |
AGAGCTTGTGGCTGAAGTTG+CGG | 0.570036 | 5_2:+11992977 | Msa0757180:CDS |
AAAAGTCAAAACCCTATCAA+AGG | 0.572964 | 5_2:-11995779 | None:intergenic |
AGTTGCGGTATTGGAGGAAG+AGG | 0.573287 | 5_2:+11992992 | Msa0757180:CDS |
AGACGAGGAAGTGCTCCTAA+AGG | 0.579607 | 5_2:-11992767 | None:intergenic |
TCAGTTCAACAGGTAGCTGA+AGG | 0.581607 | 5_2:-11995510 | None:intergenic |
ATATGTACCATGTGTGAAAG+AGG | 0.585157 | 5_2:-11995574 | None:intergenic |
CTTGAAGGGTCTTACACACC+AGG | 0.590715 | 5_2:+11993907 | Msa0757180:CDS |
CTTGCCTCTGTAAACTTGAA+GGG | 0.594429 | 5_2:+11993893 | Msa0757180:CDS |
TGCGGTATTGGAGGAAGAGG+TGG | 0.595764 | 5_2:+11992995 | Msa0757180:CDS |
AATGATGAGATGAAAGCAAG+AGG | 0.596232 | 5_2:+11994632 | Msa0757180:CDS |
TTAATCTACTTACATGGGAA+GGG | 0.597323 | 5_2:-11992802 | None:intergenic |
CAGATACCATATGGATCACG+TGG | 0.601566 | 5_2:-11993658 | None:intergenic |
GACACCAAATAGAGTTTCAG+AGG | 0.605334 | 5_2:+11993558 | Msa0757180:CDS |
CTGTCTACATTTCCTCCAAG+AGG | 0.607010 | 5_2:+11993069 | Msa0757180:CDS |
CATGGTGAAAACAAATGAGA+AGG | 0.607667 | 5_2:-11991612 | None:intergenic |
ATGGACCAGAATTCCATCAA+AGG | 0.609091 | 5_2:+11993116 | Msa0757180:CDS |
TCAAAGGATCCAAACATCAA+AGG | 0.609297 | 5_2:+11993132 | Msa0757180:CDS |
ATGCTTACTGCTAAGTGCGA+AGG | 0.612958 | 5_2:-11995848 | None:intergenic |
GATAGTGCAAATGTAACCAA+AGG | 0.614690 | 5_2:-11994680 | None:intergenic |
CATTCGGTTGAAATCAACGG+TGG | 0.616978 | 5_2:-11993740 | None:intergenic |
TGGAAGCTGGTCATCACCTG+TGG | 0.626198 | 5_2:+11994706 | Msa0757180:CDS |
TTATAGTACAATTCATGGAG+CGG | 0.642892 | 5_2:-11991693 | None:intergenic |
ACATGGGAAGGGAGATAAGG+AGG | 0.643159 | 5_2:-11992791 | None:intergenic |
TTGATTGATTACCTGAAGAG+TGG | 0.645456 | 5_2:-11991905 | None:intergenic |
GTAATCTACAAAGCATAACA+AGG | 0.653610 | 5_2:-11994549 | None:intergenic |
AAGGTTGTGAATTTCAGACA+AGG | 0.655478 | 5_2:+11993032 | Msa0757180:CDS |
GGTTGTAGCACTGATGCAGA+AGG | 0.659494 | 5_2:+11994173 | Msa0757180:CDS |
ACCACAAATAATCCAGTGAG+AGG | 0.668723 | 5_2:+11995658 | Msa0757180:three_prime_UTR |
GTTGAATGCCTTGAAAGAAG+GGG | 0.670351 | 5_2:+11995544 | Msa0757180:CDS |
AATGCCTTGAAAGAAGGGGA+AGG | 0.676784 | 5_2:+11995548 | Msa0757180:CDS |
AAGGCAGCCTCTTTCACACA+TGG | 0.686885 | 5_2:+11995567 | Msa0757180:CDS |
AAGACCCTTCAAGTTTACAG+AGG | 0.702050 | 5_2:-11993897 | None:intergenic |
CTTCTGGCAAGAGAAATCTG+AGG | 0.757425 | 5_2:-11993200 | None:intergenic |
ATACCATATGGATCACGTGG+AGG | 0.760579 | 5_2:-11993655 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAATCAATGTATTTATTA+AGG | + | chr5_2:11995267-11995286 | Msa0757180:intron | 10.0% |
!! | AAATAATACAAAAACAAAAA+AGG | + | chr5_2:11995926-11995945 | Msa0757180:three_prime_UTR | 10.0% |
!! | AATAATACAAAAACAAAAAA+GGG | + | chr5_2:11995927-11995946 | Msa0757180:three_prime_UTR | 10.0% |
!! | ATAAAGAGAAAGAAAAAAAT+AGG | - | chr5_2:11991963-11991982 | None:intergenic | 15.0% |
!!! | TATTTTTTTCTTTCTCTTTA+TGG | + | chr5_2:11991962-11991981 | Msa0757180:intron | 15.0% |
!! | GAAAAACAAATAAAGAAAAT+TGG | - | chr5_2:11991988-11992007 | None:intergenic | 15.0% |
!! | AATTGAGAAAAATAAGAAAT+TGG | + | chr5_2:11992293-11992312 | Msa0757180:intron | 15.0% |
!! | AATGCTTATCTAAATATAAT+TGG | - | chr5_2:11994351-11994370 | None:intergenic | 15.0% |
!!! | ACATTAACTATTTTCTTTTT+CGG | + | chr5_2:11994770-11994789 | Msa0757180:intron | 15.0% |
!!! | TATATATGAAAATTTGTTTC+AGG | + | chr5_2:11994852-11994871 | Msa0757180:intron | 15.0% |
!!! | ATATATGAAAATTTGTTTCA+GGG | + | chr5_2:11994853-11994872 | Msa0757180:intron | 15.0% |
!!! | ATCTATCATAAATTTGTTAT+CGG | + | chr5_2:11995053-11995072 | Msa0757180:intron | 15.0% |
!!! | ATTTTTATTTTATGAAGGTA+AGG | + | chr5_2:11995320-11995339 | Msa0757180:intron | 15.0% |
!!! | TTTTTATTTTATGAAGGTAA+GGG | + | chr5_2:11995321-11995340 | Msa0757180:intron | 15.0% |
!! | ATAATACAAAAACAAAAAAG+GGG | + | chr5_2:11995928-11995947 | Msa0757180:three_prime_UTR | 15.0% |
!! | AAAAAAAATATGGAAGAACA+TGG | - | chr5_2:11991633-11991652 | None:intergenic | 20.0% |
!!! | AGATTTTATAGTACAATTCA+TGG | - | chr5_2:11991701-11991720 | None:intergenic | 20.0% |
!! | ATCAAAATTCCTTCAAAAAA+CGG | + | chr5_2:11991923-11991942 | Msa0757180:intron | 20.0% |
!!! | TTTCTCATGTTTTTTTTTGT+TGG | + | chr5_2:11992057-11992076 | Msa0757180:intron | 20.0% |
!!! | CACATAATACTTTGAAAAAA+GGG | + | chr5_2:11992549-11992568 | Msa0757180:CDS | 20.0% |
!! | GAAATCTATTGAAAAGAAAA+TGG | + | chr5_2:11993298-11993317 | Msa0757180:CDS | 20.0% |
!! | ATCGATTAAAGTAAGTTATA+AGG | + | chr5_2:11993785-11993804 | Msa0757180:intron | 20.0% |
!! | TCGATTAAAGTAAGTTATAA+GGG | + | chr5_2:11993786-11993805 | Msa0757180:intron | 20.0% |
!! | ACAAGAAAAACTAAAAAAGT+TGG | + | chr5_2:11994017-11994036 | Msa0757180:intron | 20.0% |
!! | CAATTATTTGGTTATATTGT+AGG | + | chr5_2:11994113-11994132 | Msa0757180:intron | 20.0% |
!!! | ATTTTCATATATACTAGTCA+AGG | - | chr5_2:11994845-11994864 | None:intergenic | 20.0% |
!!! | TCTATCATAAATTTGTTATC+GGG | + | chr5_2:11995054-11995073 | Msa0757180:intron | 20.0% |
!! | AAAATTAGAAAAGTGGAAAT+TGG | - | chr5_2:11995198-11995217 | None:intergenic | 20.0% |
!! | ATAGTTATCATTCTTAATGT+GGG | + | chr5_2:11995237-11995256 | Msa0757180:intron | 20.0% |
!!! | AATGTATTTATTAAGGCATT+TGG | + | chr5_2:11995274-11995293 | Msa0757180:intron | 20.0% |
!! | TTACAGTCTGTAAAAAAAAA+AGG | - | chr5_2:11995822-11995841 | None:intergenic | 20.0% |
!!! | TTTTTTTACAGACTGTAATA+AGG | + | chr5_2:11995824-11995843 | Msa0757180:three_prime_UTR | 20.0% |
!! | TAATACAAAAACAAAAAAGG+GGG | + | chr5_2:11995929-11995948 | Msa0757180:three_prime_UTR | 20.0% |
! | ACTTTCATTAGTCATATATG+AGG | + | chr5_2:11991554-11991573 | Msa0757180:five_prime_UTR | 25.0% |
!! | TGTTTTTCTGTTTGATTGTA+AGG | + | chr5_2:11992000-11992019 | Msa0757180:intron | 25.0% |
! | AAGAAACAAATGACCATTTA+AGG | + | chr5_2:11992027-11992046 | Msa0757180:intron | 25.0% |
!!! | TAAGTGTTACTTTAACAGTT+AGG | + | chr5_2:11992336-11992355 | Msa0757180:intron | 25.0% |
! | AAATGAGAAAGAAAGATAGA+AGG | - | chr5_2:11992435-11992454 | None:intergenic | 25.0% |
!! | GCACATAATACTTTGAAAAA+AGG | + | chr5_2:11992548-11992567 | Msa0757180:CDS | 25.0% |
! | GTAGAACAATTAATAATGCA+AGG | - | chr5_2:11992624-11992643 | None:intergenic | 25.0% |
! | ATGCATTGAATACAATTGAT+CGG | - | chr5_2:11992863-11992882 | None:intergenic | 25.0% |
! | TCAATTGTATTCAATGCATT+TGG | + | chr5_2:11992864-11992883 | Msa0757180:intron | 25.0% |
!! | TTTTCAATAGATTTCTCTTC+TGG | - | chr5_2:11993293-11993312 | None:intergenic | 25.0% |
! | GCACATCAAATAGTAATTAT+TGG | - | chr5_2:11993418-11993437 | None:intergenic | 25.0% |
! | TATGAGAATTTCCATATTCA+AGG | + | chr5_2:11993609-11993628 | Msa0757180:CDS | 25.0% |
! | ATATCGAAAACTAGAGATAT+TGG | + | chr5_2:11993685-11993704 | Msa0757180:CDS | 25.0% |
! | AATCTCACAAAAACTATTGT+AGG | - | chr5_2:11993713-11993732 | None:intergenic | 25.0% |
! | CGATTAAAGTAAGTTATAAG+GGG | + | chr5_2:11993787-11993806 | Msa0757180:intron | 25.0% |
! | AGGTGTAGATTTATATTTGA+TGG | + | chr5_2:11994047-11994066 | Msa0757180:intron | 25.0% |
! | CTTACATAATTCAAGTGATA+AGG | - | chr5_2:11994474-11994493 | None:intergenic | 25.0% |
! | TAGATGAAAATATTGTTCTG+TGG | + | chr5_2:11994747-11994766 | Msa0757180:intron | 25.0% |
! | CATAGTTATCATTCTTAATG+TGG | + | chr5_2:11995236-11995255 | Msa0757180:intron | 25.0% |
! | AAGTAATGTTTCCTTTGATA+GGG | + | chr5_2:11995768-11995787 | Msa0757180:three_prime_UTR | 25.0% |
! | CTTGTGTAAAGTACCAATAT+GGG | - | chr5_2:11991521-11991540 | None:intergenic | 30.0% |
TTATAGTACAATTCATGGAG+CGG | - | chr5_2:11991696-11991715 | None:intergenic | 30.0% | |
! | CTCTGTTGTTTGTGAATTAT+TGG | + | chr5_2:11991739-11991758 | Msa0757180:five_prime_UTR | 30.0% |
TAACAATACTACAGCAGAAA+AGG | - | chr5_2:11991824-11991843 | None:intergenic | 30.0% | |
!!! | TTTCTTGTTTTGTGTGAAAG+TGG | + | chr5_2:11991859-11991878 | Msa0757180:five_prime_UTR | 30.0% |
!!! | AATAGTTTGCCGTTTTTTGA+AGG | - | chr5_2:11991935-11991954 | None:intergenic | 30.0% |
! | AAATGACCATTTAAGGTTGT+TGG | + | chr5_2:11992034-11992053 | Msa0757180:intron | 30.0% |
!!! | AACCACTTGGTTTTGAATAT+AGG | + | chr5_2:11992226-11992245 | Msa0757180:intron | 30.0% |
AAGAACATAGTTCTCAGATT+TGG | - | chr5_2:11992377-11992396 | None:intergenic | 30.0% | |
TTAATCTACTTACATGGGAA+GGG | - | chr5_2:11992805-11992824 | None:intergenic | 30.0% | |
CTGACTTAATCTACTTACAT+GGG | - | chr5_2:11992810-11992829 | None:intergenic | 30.0% | |
! | ACTGACTTAATCTACTTACA+TGG | - | chr5_2:11992811-11992830 | None:intergenic | 30.0% |
! | ATTTTAGACATTAGAGCTTG+TGG | + | chr5_2:11992965-11992984 | Msa0757180:intron | 30.0% |
TTTCAGACAAGGTTTATATC+AGG | + | chr5_2:11993043-11993062 | Msa0757180:CDS | 30.0% | |
!! | TGATTTTGACCTTTGATGTT+TGG | - | chr5_2:11993144-11993163 | None:intergenic | 30.0% |
AGCTTAATTCTACAACCATT+AGG | + | chr5_2:11993177-11993196 | Msa0757180:CDS | 30.0% | |
!! | TTTTGTTTCGATTAATCAGC+TGG | + | chr5_2:11993468-11993487 | Msa0757180:intron | 30.0% |
ACAAAATTCATCAGACGATA+AGG | + | chr5_2:11993519-11993538 | Msa0757180:CDS | 30.0% | |
! | ATAAGGTGTTAGAAGTTGAT+AGG | + | chr5_2:11993536-11993555 | Msa0757180:CDS | 30.0% |
!! | ATATCCTCTGAAACTCTATT+TGG | - | chr5_2:11993565-11993584 | None:intergenic | 30.0% |
GATATTGAACAGATACCATA+TGG | - | chr5_2:11993670-11993689 | None:intergenic | 30.0% | |
TTTCATTCGGTTGAAATCAA+CGG | - | chr5_2:11993746-11993765 | None:intergenic | 30.0% | |
! | GAAACGCTGAATTTTTCATT+CGG | - | chr5_2:11993759-11993778 | None:intergenic | 30.0% |
GTATCTTACATTCATCATAC+AGG | - | chr5_2:11993966-11993985 | None:intergenic | 30.0% | |
TTGAGGTGACTACAATTATT+TGG | + | chr5_2:11994101-11994120 | Msa0757180:intron | 30.0% | |
! | ATTGACATGAATGGATTTCT+TGG | + | chr5_2:11994307-11994326 | Msa0757180:intron | 30.0% |
GTAATCTACAAAGCATAACA+AGG | - | chr5_2:11994552-11994571 | None:intergenic | 30.0% | |
!!! | ATTTTTTGCAGCTTTTAGAC+AGG | - | chr5_2:11994615-11994634 | None:intergenic | 30.0% |
GATGATCACATAAGACATTA+AGG | - | chr5_2:11994801-11994820 | None:intergenic | 30.0% | |
GCTGAGAATTGAAATAATCT+AGG | + | chr5_2:11994895-11994914 | Msa0757180:intron | 30.0% | |
! | CAAGTTACAAGTCAGTTTTT+AGG | - | chr5_2:11994989-11995008 | None:intergenic | 30.0% |
!! | AAACTGACTTGTAACTTGTA+AGG | + | chr5_2:11994991-11995010 | Msa0757180:intron | 30.0% |
GCTAGTGAAAATTAGAAAAG+TGG | - | chr5_2:11995205-11995224 | None:intergenic | 30.0% | |
! | CTTTTCTAATTTTCACTAGC+AGG | + | chr5_2:11995205-11995224 | Msa0757180:intron | 30.0% |
AGCAAAGAGAGATTATTTAC+AGG | + | chr5_2:11995381-11995400 | Msa0757180:CDS | 30.0% | |
TAATTCCAAAGATACTTGAC+TGG | + | chr5_2:11995437-11995456 | Msa0757180:CDS | 30.0% | |
AAAAACCAGTCAAGTATCTT+TGG | - | chr5_2:11995445-11995464 | None:intergenic | 30.0% | |
AACCTGAAACTGAAATCATA+GGG | - | chr5_2:11995604-11995623 | None:intergenic | 30.0% | |
! | ATTTTTGAACTTTGATGTGC+TGG | + | chr5_2:11995706-11995725 | Msa0757180:three_prime_UTR | 30.0% |
! | ATGTGCTGGATTTTGTATAT+TGG | + | chr5_2:11995720-11995739 | Msa0757180:three_prime_UTR | 30.0% |
CAAGTAATGTTTCCTTTGAT+AGG | + | chr5_2:11995767-11995786 | Msa0757180:three_prime_UTR | 30.0% | |
AAAAGTCAAAACCCTATCAA+AGG | - | chr5_2:11995782-11995801 | None:intergenic | 30.0% | |
! | GACTTTTGTAAACTGCAATA+AGG | + | chr5_2:11995795-11995814 | Msa0757180:three_prime_UTR | 30.0% |
! | GCAGTAAGCATAGATTTTAT+AGG | + | chr5_2:11995860-11995879 | Msa0757180:three_prime_UTR | 30.0% |
!!! | TCATATTTTGATGCGATCAT+GGG | - | chr5_2:11995894-11995913 | None:intergenic | 30.0% |
! | GCTTGTGTAAAGTACCAATA+TGG | - | chr5_2:11991522-11991541 | None:intergenic | 35.0% |
CATGGTGAAAACAAATGAGA+AGG | - | chr5_2:11991615-11991634 | None:intergenic | 35.0% | |
GCGGGAAAAAGAAGAAAAAA+TGG | - | chr5_2:11991677-11991696 | None:intergenic | 35.0% | |
TATAGTACAATTCATGGAGC+GGG | - | chr5_2:11991695-11991714 | None:intergenic | 35.0% | |
TTGATTGATTACCTGAAGAG+TGG | - | chr5_2:11991908-11991927 | None:intergenic | 35.0% | |
GAGAAACCAACAACCTTAAA+TGG | - | chr5_2:11992043-11992062 | None:intergenic | 35.0% | |
!!! | TTTTTGTTGGTCTTACCCTT+CGG | + | chr5_2:11992070-11992089 | Msa0757180:intron | 35.0% |
TGGAGATGATAAGTAAAGAC+TGG | + | chr5_2:11992119-11992138 | Msa0757180:intron | 35.0% | |
ACTACTTAAGTCTAACCACT+TGG | + | chr5_2:11992213-11992232 | Msa0757180:intron | 35.0% | |
AGCCTATATTCAAAACCAAG+TGG | - | chr5_2:11992231-11992250 | None:intergenic | 35.0% | |
GAGAAAGAAAGATAGAAGGA+AGG | - | chr5_2:11992431-11992450 | None:intergenic | 35.0% | |
AAGCAGGAAAAGATGGAAAA+AGG | + | chr5_2:11992506-11992525 | Msa0757180:intron | 35.0% | |
AGGAAAAGATGGAAAAAGGA+GGG | + | chr5_2:11992510-11992529 | Msa0757180:intron | 35.0% | |
!! | TGCAGGTTGATAAGTTAAAG+AGG | + | chr5_2:11992690-11992709 | Msa0757180:intron | 35.0% |
CTTAATCTACTTACATGGGA+AGG | - | chr5_2:11992806-11992825 | None:intergenic | 35.0% | |
AAGGTTGTGAATTTCAGACA+AGG | + | chr5_2:11993032-11993051 | Msa0757180:CDS | 35.0% | |
TTGATGTTTGGATCCTTTGA+TGG | - | chr5_2:11993132-11993151 | None:intergenic | 35.0% | |
TCAAAGGATCCAAACATCAA+AGG | + | chr5_2:11993132-11993151 | Msa0757180:CDS | 35.0% | |
TCTAGTAGAAAGCTAGTCAA+TGG | + | chr5_2:11993227-11993246 | Msa0757180:CDS | 35.0% | |
CTAGTAGAAAGCTAGTCAAT+GGG | + | chr5_2:11993228-11993247 | Msa0757180:CDS | 35.0% | |
!! | TGAAGATAAGGAGTCTTGTT+TGG | - | chr5_2:11993267-11993286 | None:intergenic | 35.0% |
! | CTCTTCTGGTATTGAAGATA+AGG | - | chr5_2:11993279-11993298 | None:intergenic | 35.0% |
! | TCAACTGATTCTTGTTTGCT+TGG | - | chr5_2:11993353-11993372 | None:intergenic | 35.0% |
TCCATATTCAAGGACAATCT+AGG | + | chr5_2:11993619-11993638 | Msa0757180:CDS | 35.0% | |
TCCTAGATTGTCCTTGAATA+TGG | - | chr5_2:11993623-11993642 | None:intergenic | 35.0% | |
! | CTTTTTGCTGATGCTACATA+TGG | + | chr5_2:11993817-11993836 | Msa0757180:intron | 35.0% |
CTAATCTAAAAGACATGTCC+AGG | + | chr5_2:11993855-11993874 | Msa0757180:intron | 35.0% | |
! | ACATGTCCAGGTTCTTATTT+GGG | + | chr5_2:11993867-11993886 | Msa0757180:intron | 35.0% |
AAGTTTCCCAAATAAGAACC+TGG | - | chr5_2:11993876-11993895 | None:intergenic | 35.0% | |
! | CTAAAAAAGTTGGCTCTTTG+AGG | + | chr5_2:11994027-11994046 | Msa0757180:intron | 35.0% |
TTTCCTTGCCTAATATGTTG+AGG | + | chr5_2:11994084-11994103 | Msa0757180:intron | 35.0% | |
TGTAGTCACCTCAACATATT+AGG | - | chr5_2:11994095-11994114 | None:intergenic | 35.0% | |
! | TTGTAGGCATATTTAGAGCA+TGG | + | chr5_2:11994129-11994148 | Msa0757180:intron | 35.0% |
CAAAAGCTGAGAACATTAGA+GGG | - | chr5_2:11994208-11994227 | None:intergenic | 35.0% | |
ACAAAAGCTGAGAACATTAG+AGG | - | chr5_2:11994209-11994228 | None:intergenic | 35.0% | |
GAAGCAAAGATGAATTGAGA+AGG | - | chr5_2:11994279-11994298 | None:intergenic | 35.0% | |
CCATTCATGTCAATATGTGA+TGG | - | chr5_2:11994301-11994320 | None:intergenic | 35.0% | |
CCATCACATATTGACATGAA+TGG | + | chr5_2:11994298-11994317 | Msa0757180:intron | 35.0% | |
!! | CATTCGAGTTGACTAAAACT+TGG | + | chr5_2:11994367-11994386 | Msa0757180:intron | 35.0% |
!! | AACTTGGTAATGTTTGTGAC+AGG | + | chr5_2:11994383-11994402 | Msa0757180:intron | 35.0% |
AATGATGAGATGAAAGCAAG+AGG | + | chr5_2:11994632-11994651 | Msa0757180:CDS | 35.0% | |
! | ATGAAAGCAAGAGGCATATT+TGG | + | chr5_2:11994641-11994660 | Msa0757180:CDS | 35.0% |
GATAGTGCAAATGTAACCAA+AGG | - | chr5_2:11994683-11994702 | None:intergenic | 35.0% | |
GTTACATTTGCACTATCTTG+TGG | + | chr5_2:11994686-11994705 | Msa0757180:CDS | 35.0% | |
TTGAGAAACAAACATACCAC+AGG | - | chr5_2:11994725-11994744 | None:intergenic | 35.0% | |
! | TGTTTCAGGGTGTTATGTAA+TGG | + | chr5_2:11994866-11994885 | Msa0757180:intron | 35.0% |
TTAGGTCATATCTCAAGTGA+AGG | - | chr5_2:11994971-11994990 | None:intergenic | 35.0% | |
!!! | CTTATTTTGATCCTACAAGC+CGG | + | chr5_2:11995109-11995128 | Msa0757180:intron | 35.0% |
CCTATGATACCAAACAAAAC+CGG | - | chr5_2:11995131-11995150 | None:intergenic | 35.0% | |
! | AAGGCATTTGGTTGAATTGA+TGG | + | chr5_2:11995286-11995305 | Msa0757180:intron | 35.0% |
! | GTTTTTACTCGACTTTGCAA+AGG | + | chr5_2:11995459-11995478 | Msa0757180:CDS | 35.0% |
AAAGGACTTGGAATCTTTGT+TGG | + | chr5_2:11995477-11995496 | Msa0757180:CDS | 35.0% | |
ACTTGGAATCTTTGTTGGAT+TGG | + | chr5_2:11995482-11995501 | Msa0757180:CDS | 35.0% | |
CTTGGAATCTTTGTTGGATT+GGG | + | chr5_2:11995483-11995502 | Msa0757180:CDS | 35.0% | |
AGTTGAATGCCTTGAAAGAA+GGG | + | chr5_2:11995543-11995562 | Msa0757180:CDS | 35.0% | |
ATATGTACCATGTGTGAAAG+AGG | - | chr5_2:11995577-11995596 | None:intergenic | 35.0% | |
CAACCTGAAACTGAAATCAT+AGG | - | chr5_2:11995605-11995624 | None:intergenic | 35.0% | |
!!! | ACCAGTAACCTGGTTTTTTT+TGG | + | chr5_2:11995632-11995651 | Msa0757180:exon | 35.0% |
TCCAAAAAAAACCAGGTTAC+TGG | - | chr5_2:11995636-11995655 | None:intergenic | 35.0% | |
!!! | CTCATATTTTGATGCGATCA+TGG | - | chr5_2:11995895-11995914 | None:intergenic | 35.0% |
ACAAAAACAAAAAAGGGGGT+TGG | + | chr5_2:11995933-11995952 | Msa0757180:three_prime_UTR | 35.0% | |
GGACGATGTCTGTTTGTTTA+AGG | - | chr5_2:11991594-11991613 | None:intergenic | 40.0% | |
AGTCTAAACTTGCGTACTTG+TGG | + | chr5_2:11992162-11992181 | Msa0757180:intron | 40.0% | |
TCTCACTTAATGTGCAAAGC+AGG | + | chr5_2:11992490-11992509 | Msa0757180:intron | 40.0% | |
ATGTGCAAAGCAGGAAAAGA+TGG | + | chr5_2:11992499-11992518 | Msa0757180:intron | 40.0% | |
CAGGAAAAGATGGAAAAAGG+AGG | + | chr5_2:11992509-11992528 | Msa0757180:intron | 40.0% | |
! | TTATGCTGCTTGAAGTTTGC+AGG | + | chr5_2:11992673-11992692 | Msa0757180:intron | 40.0% |
! | CATCGGGTCAATCGAATTTT+CGG | - | chr5_2:11993099-11993118 | None:intergenic | 40.0% |
TTGATGGAATTCTGGTCCAT+CGG | - | chr5_2:11993116-11993135 | None:intergenic | 40.0% | |
ATGGACCAGAATTCCATCAA+AGG | + | chr5_2:11993116-11993135 | Msa0757180:CDS | 40.0% | |
TGGATCCTTTGATGGAATTC+TGG | - | chr5_2:11993124-11993143 | None:intergenic | 40.0% | |
! | AAGAGAAATCTGAGGCCTAA+TGG | - | chr5_2:11993195-11993214 | None:intergenic | 40.0% |
!! | CTTTCTACTAGAAGCACTTC+TGG | - | chr5_2:11993219-11993238 | None:intergenic | 40.0% |
! | TTGCTTGGTGATTTCTTCAC+TGG | - | chr5_2:11993338-11993357 | None:intergenic | 40.0% |
GACACCAAATAGAGTTTCAG+AGG | + | chr5_2:11993558-11993577 | Msa0757180:CDS | 40.0% | |
GACATGTCCAGGTTCTTATT+TGG | + | chr5_2:11993866-11993885 | Msa0757180:intron | 40.0% | |
ACTTGCCTCTGTAAACTTGA+AGG | + | chr5_2:11993892-11993911 | Msa0757180:CDS | 40.0% | |
CTTGCCTCTGTAAACTTGAA+GGG | + | chr5_2:11993893-11993912 | Msa0757180:CDS | 40.0% | |
! | AAGACCCTTCAAGTTTACAG+AGG | - | chr5_2:11993900-11993919 | None:intergenic | 40.0% |
! | ACCAGGAGAAACTTGCATTT+TGG | + | chr5_2:11993924-11993943 | Msa0757180:CDS | 40.0% |
TCCAAAATGCAAGTTTCTCC+TGG | - | chr5_2:11993928-11993947 | None:intergenic | 40.0% | |
TCACCTCAACATATTAGGCA+AGG | - | chr5_2:11994090-11994109 | None:intergenic | 40.0% | |
ATCAGTGCTACAACCATTTC+AGG | - | chr5_2:11994168-11994187 | None:intergenic | 40.0% | |
! | AGCAAGAGGCATATTTGGTT+TGG | + | chr5_2:11994646-11994665 | Msa0757180:CDS | 40.0% |
!! | GAGGCATATTTGGTTTGGAA+TGG | + | chr5_2:11994651-11994670 | Msa0757180:CDS | 40.0% |
! | TTTGGAATGGTCTGAACCTT+TGG | + | chr5_2:11994664-11994683 | Msa0757180:CDS | 40.0% |
TCTCAAGTGAAGGTGAGATT+TGG | - | chr5_2:11994961-11994980 | None:intergenic | 40.0% | |
!! | AAATTTGTTATCGGGCCACT+CGG | + | chr5_2:11995062-11995081 | Msa0757180:intron | 40.0% |
ATTATCCAGCAAGGTACAGT+AGG | + | chr5_2:11995085-11995104 | Msa0757180:intron | 40.0% | |
TTATCCAGCAAGGTACAGTA+GGG | + | chr5_2:11995086-11995105 | Msa0757180:intron | 40.0% | |
!!! | CCGGTTTTGTTTGGTATCAT+AGG | + | chr5_2:11995128-11995147 | Msa0757180:intron | 40.0% |
GATTATTTACAGGCAGCAGT+TGG | + | chr5_2:11995391-11995410 | Msa0757180:CDS | 40.0% | |
CAGTTGAATGCCTTGAAAGA+AGG | + | chr5_2:11995542-11995561 | Msa0757180:CDS | 40.0% | |
GTTGAATGCCTTGAAAGAAG+GGG | + | chr5_2:11995544-11995563 | Msa0757180:CDS | 40.0% | |
TGCCCTATGATTTCAGTTTC+AGG | + | chr5_2:11995599-11995618 | Msa0757180:CDS | 40.0% | |
GTGGTTGTCCAAAAAAAACC+AGG | - | chr5_2:11995643-11995662 | None:intergenic | 40.0% | |
ACCACAAATAATCCAGTGAG+AGG | + | chr5_2:11995658-11995677 | Msa0757180:three_prime_UTR | 40.0% | |
ACCTCTCACTGGATTATTTG+TGG | - | chr5_2:11995662-11995681 | None:intergenic | 40.0% | |
ATTACGAGAGTCCGATTCCT+CGG | - | chr5_2:11992098-11992117 | None:intergenic | 45.0% | |
GGAATCGGACTCTCGTAATT+TGG | + | chr5_2:11992099-11992118 | Msa0757180:intron | 45.0% | |
AAAAGGAGGGAGCAGGAAAA+TGG | + | chr5_2:11992523-11992542 | Msa0757180:CDS | 45.0% | |
!! | TGAAAAAAGGGCGTCGAGAA+AGG | + | chr5_2:11992561-11992580 | Msa0757180:CDS | 45.0% |
! | AGAGCACTCACTAGACCTTT+AGG | + | chr5_2:11992752-11992771 | Msa0757180:CDS | 45.0% |
CTTACATGGGAAGGGAGATA+AGG | - | chr5_2:11992797-11992816 | None:intergenic | 45.0% | |
GGTGGTTCGATTAGAAGAGA+AGG | + | chr5_2:11993013-11993032 | Msa0757180:CDS | 45.0% | |
CTGTCTACATTTCCTCCAAG+AGG | + | chr5_2:11993069-11993088 | Msa0757180:CDS | 45.0% | |
! | ATTTTCGGCATTCCTCTTGG+AGG | - | chr5_2:11993084-11993103 | None:intergenic | 45.0% |
! | CGAATTTTCGGCATTCCTCT+TGG | - | chr5_2:11993087-11993106 | None:intergenic | 45.0% |
CGAAAATTCGATTGACCCGA+TGG | + | chr5_2:11993097-11993116 | Msa0757180:CDS | 45.0% | |
TGATGGAATTCTGGTCCATC+GGG | - | chr5_2:11993115-11993134 | None:intergenic | 45.0% | |
CTTCTGGCAAGAGAAATCTG+AGG | - | chr5_2:11993203-11993222 | None:intergenic | 45.0% | |
ATACCATATGGATCACGTGG+AGG | - | chr5_2:11993658-11993677 | None:intergenic | 45.0% | |
CAGATACCATATGGATCACG+TGG | - | chr5_2:11993661-11993680 | None:intergenic | 45.0% | |
CATTCGGTTGAAATCAACGG+TGG | - | chr5_2:11993743-11993762 | None:intergenic | 45.0% | |
CATACCTGAGAGTCCTGAAA+TGG | + | chr5_2:11994152-11994171 | Msa0757180:CDS | 45.0% | |
ACAACCATTTCAGGACTCTC+AGG | - | chr5_2:11994159-11994178 | None:intergenic | 45.0% | |
TGACAGGCCACAATAGTAGT+GGG | + | chr5_2:11994399-11994418 | Msa0757180:intron | 45.0% | |
! | CTTTTAGACAGGTCTGTTGC+AGG | - | chr5_2:11994604-11994623 | None:intergenic | 45.0% |
TTGCACTATCTTGTGGAAGC+TGG | + | chr5_2:11994693-11994712 | Msa0757180:CDS | 45.0% | |
AAGCGCTAAGCATAACTGTG+TGG | + | chr5_2:11994925-11994944 | Msa0757180:intron | 45.0% | |
!!! | TCCTACAAGCCGGTTTTGTT+TGG | + | chr5_2:11995119-11995138 | Msa0757180:intron | 45.0% |
!! | ACCAAACAAAACCGGCTTGT+AGG | - | chr5_2:11995123-11995142 | None:intergenic | 45.0% |
ACTCGACTTTGCAAAGGACT+TGG | + | chr5_2:11995465-11995484 | Msa0757180:CDS | 45.0% | |
TCAGTTCAACAGGTAGCTGA+AGG | - | chr5_2:11995513-11995532 | None:intergenic | 45.0% | |
GCTACCTGTTGAACTGAGAA+AGG | + | chr5_2:11995516-11995535 | Msa0757180:CDS | 45.0% | |
GCTTCCTTTCTCAGTTCAAC+AGG | - | chr5_2:11995523-11995542 | None:intergenic | 45.0% | |
AATGCCTTGAAAGAAGGGGA+AGG | + | chr5_2:11995548-11995567 | Msa0757180:CDS | 45.0% | |
TTGCTTGTACACCAGTAACC+TGG | + | chr5_2:11995622-11995641 | Msa0757180:exon | 45.0% | |
ACATTAACAGCACCTCTCAC+TGG | - | chr5_2:11995673-11995692 | None:intergenic | 45.0% | |
ATGCTTACTGCTAAGTGCGA+AGG | - | chr5_2:11995851-11995870 | None:intergenic | 45.0% | |
!! | TACAAATAATAAAAAAAATA+TGG | - | chr5_2:11991643-11991662 | None:intergenic | 5.0% |
!!! | TATATATTTTTATTTTATGA+AGG | + | chr5_2:11995315-11995334 | Msa0757180:intron | 5.0% |
TTACGAGAGTCCGATTCCTC+GGG | - | chr5_2:11992097-11992116 | None:intergenic | 50.0% | |
AGATGGAAAAAGGAGGGAGC+AGG | + | chr5_2:11992516-11992535 | Msa0757180:CDS | 50.0% | |
!! | AGGGCGTCGAGAAAGGAAAA+TGG | + | chr5_2:11992568-11992587 | Msa0757180:CDS | 50.0% |
!! | AGACGAGGAAGTGCTCCTAA+AGG | - | chr5_2:11992770-11992789 | None:intergenic | 50.0% |
ACATGGGAAGGGAGATAAGG+AGG | - | chr5_2:11992794-11992813 | None:intergenic | 50.0% | |
AGAGCTTGTGGCTGAAGTTG+CGG | + | chr5_2:11992977-11992996 | Msa0757180:CDS | 50.0% | |
TGTGGCTGAAGTTGCGGTAT+TGG | + | chr5_2:11992983-11993002 | Msa0757180:CDS | 50.0% | |
! | AGTTGCGGTATTGGAGGAAG+AGG | + | chr5_2:11992992-11993011 | Msa0757180:CDS | 50.0% |
TGCAGATCACGTGAAGTTGC+AGG | + | chr5_2:11993379-11993398 | Msa0757180:CDS | 50.0% | |
ACACCTCCACGTGATCCATA+TGG | + | chr5_2:11993652-11993671 | Msa0757180:CDS | 50.0% | |
TCGGTTGAAATCAACGGTGG+AGG | - | chr5_2:11993740-11993759 | None:intergenic | 50.0% | |
CTTGAAGGGTCTTACACACC+AGG | + | chr5_2:11993907-11993926 | Msa0757180:CDS | 50.0% | |
!! | GGTTGTAGCACTGATGCAGA+AGG | + | chr5_2:11994173-11994192 | Msa0757180:CDS | 50.0% |
GTGACAGGCCACAATAGTAG+TGG | + | chr5_2:11994398-11994417 | Msa0757180:intron | 50.0% | |
GACAGGCCACAATAGTAGTG+GGG | + | chr5_2:11994400-11994419 | Msa0757180:intron | 50.0% | |
ACAGGCCACAATAGTAGTGG+GGG | + | chr5_2:11994401-11994420 | Msa0757180:intron | 50.0% | |
ACCTTGCTGGATAATCCGAG+TGG | - | chr5_2:11995080-11995099 | None:intergenic | 50.0% | |
TAAGCCCTACTGTACCTTGC+TGG | - | chr5_2:11995093-11995112 | None:intergenic | 50.0% | |
AAGGCAGCCTCTTTCACACA+TGG | + | chr5_2:11995567-11995586 | Msa0757180:CDS | 50.0% | |
CAGAGCACACACCACTCTTC+AGG | + | chr5_2:11991894-11991913 | Msa0757180:CDS | 55.0% | |
GGGAGATAAGGAGGAAGACG+AGG | - | chr5_2:11992785-11992804 | None:intergenic | 55.0% | |
! | GGCTGAAGTTGCGGTATTGG+AGG | + | chr5_2:11992986-11993005 | Msa0757180:CDS | 55.0% |
! | TGCGGTATTGGAGGAAGAGG+TGG | + | chr5_2:11992995-11993014 | Msa0757180:CDS | 55.0% |
! | CAGGCCACAATAGTAGTGGG+GGG | + | chr5_2:11994402-11994421 | Msa0757180:intron | 55.0% |
GTGTCCCCCCACTACTATTG+TGG | - | chr5_2:11994409-11994428 | None:intergenic | 55.0% | |
TGGAAGCTGGTCATCACCTG+TGG | + | chr5_2:11994706-11994725 | Msa0757180:CDS | 55.0% | |
GCCACTCGGATTATCCAGCA+AGG | + | chr5_2:11995076-11995095 | Msa0757180:intron | 55.0% | |
GCTGCCTTCCCCTTCTTTCA+AGG | - | chr5_2:11995555-11995574 | None:intergenic | 55.0% | |
ACCCTTCGGTCCCGAGGAAT+CGG | + | chr5_2:11992084-11992103 | Msa0757180:intron | 60.0% | |
TCCGATTCCTCGGGACCGAA+GGG | - | chr5_2:11992088-11992107 | None:intergenic | 60.0% | |
AGTGGGGGGACACTTGCTCA+AGG | + | chr5_2:11994416-11994435 | Msa0757180:intron | 60.0% | |
GGTCTTACCCTTCGGTCCCG+AGG | + | chr5_2:11992078-11992097 | Msa0757180:intron | 65.0% | |
GTCCGATTCCTCGGGACCGA+AGG | - | chr5_2:11992089-11992108 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 11991512 | 11995957 | 11991512 | ID=Msa0757180;Name=Msa0757180 |
chr5_2 | mRNA | 11991512 | 11995957 | 11991512 | ID=Msa0757180-mRNA-1;Parent=Msa0757180;Name=Msa0757180-mRNA-1;_AED=0.18;_eAED=0.19;_QI=374|0.87|0.88|1|0.87|0.88|9|318|539 |
chr5_2 | exon | 11991512 | 11991915 | 11991512 | ID=Msa0757180-mRNA-1:exon:5355;Parent=Msa0757180-mRNA-1 |
chr5_2 | exon | 11992512 | 11992604 | 11992512 | ID=Msa0757180-mRNA-1:exon:5356;Parent=Msa0757180-mRNA-1 |
chr5_2 | exon | 11992695 | 11992811 | 11992695 | ID=Msa0757180-mRNA-1:exon:5357;Parent=Msa0757180-mRNA-1 |
chr5_2 | exon | 11992972 | 11993400 | 11992972 | ID=Msa0757180-mRNA-1:exon:5358;Parent=Msa0757180-mRNA-1 |
chr5_2 | exon | 11993487 | 11993794 | 11993487 | ID=Msa0757180-mRNA-1:exon:5359;Parent=Msa0757180-mRNA-1 |
chr5_2 | exon | 11993877 | 11993976 | 11993877 | ID=Msa0757180-mRNA-1:exon:5360;Parent=Msa0757180-mRNA-1 |
chr5_2 | exon | 11994135 | 11994194 | 11994135 | ID=Msa0757180-mRNA-1:exon:5361;Parent=Msa0757180-mRNA-1 |
chr5_2 | exon | 11994548 | 11994727 | 11994548 | ID=Msa0757180-mRNA-1:exon:5362;Parent=Msa0757180-mRNA-1 |
chr5_2 | exon | 11995337 | 11995957 | 11995337 | ID=Msa0757180-mRNA-1:exon:5363;Parent=Msa0757180-mRNA-1 |
chr5_2 | five_prime_UTR | 11991512 | 11991885 | 11991512 | ID=Msa0757180-mRNA-1:five_prime_utr;Parent=Msa0757180-mRNA-1 |
chr5_2 | CDS | 11991886 | 11991915 | 11991886 | ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1 |
chr5_2 | CDS | 11992512 | 11992604 | 11992512 | ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1 |
chr5_2 | CDS | 11992695 | 11992811 | 11992695 | ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1 |
chr5_2 | CDS | 11992972 | 11993400 | 11992972 | ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1 |
chr5_2 | CDS | 11993487 | 11993794 | 11993487 | ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1 |
chr5_2 | CDS | 11993877 | 11993976 | 11993877 | ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1 |
chr5_2 | CDS | 11994135 | 11994194 | 11994135 | ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1 |
chr5_2 | CDS | 11994548 | 11994727 | 11994548 | ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1 |
chr5_2 | CDS | 11995337 | 11995639 | 11995337 | ID=Msa0757180-mRNA-1:cds;Parent=Msa0757180-mRNA-1 |
chr5_2 | three_prime_UTR | 11995640 | 11995957 | 11995640 | ID=Msa0757180-mRNA-1:three_prime_utr;Parent=Msa0757180-mRNA-1 |
Gene Sequence |
Protein sequence |