Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122610 | XP_013468327.1 | 96.923 | 260 | 8 | 0 | 1 | 260 | 621 | 880 | 1.16e-174 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122610 | sp|Q9C895|BRE1B_ARATH | 60.769 | 260 | 102 | 0 | 1 | 260 | 641 | 900 | 9.33e-106 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122610 | A0A072VK57 | 96.923 | 260 | 8 | 0 | 1 | 260 | 621 | 880 | 5.53e-175 | 514 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001240 | Msa0122610 | 0.829991 | 3.775532e-55 | -8.615850e-47 |
| Msa0015610 | Msa0122610 | 0.804394 | 2.206533e-49 | -8.615850e-47 |
| Msa0074700 | Msa0122610 | 0.949947 | 4.521156e-108 | -8.615850e-47 |
| Msa0122610 | Msa0493630 | 0.804094 | 2.547535e-49 | -8.615850e-47 |
| Msa0122610 | Msa0580260 | 0.825100 | 5.633386e-54 | -8.615850e-47 |
| Msa0122610 | Msa0629780 | 0.828124 | 1.069976e-54 | -8.615850e-47 |
| Msa0122610 | Msa0709400 | 0.805061 | 1.600815e-49 | -8.615850e-47 |
| Msa0122610 | Msa0981590 | 0.826481 | 2.649503e-54 | -8.615850e-47 |
| Msa0122610 | Msa1233910 | 0.807832 | 4.168748e-50 | -8.615850e-47 |
| Msa0122610 | Msa1375170 | 0.807551 | 4.782642e-50 | -8.615850e-47 |
| Msa0122610 | Msa1457240 | 0.806198 | 9.240011e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122610 | MtrunA17_Chr1g0182391 | 96.923 | 260 | 8 | 0 | 1 | 260 | 621 | 880 | 1.07e-178 | 514 |
| Msa0122610 | MtrunA17_Chr5g0438781 | 90.385 | 260 | 25 | 0 | 1 | 260 | 621 | 880 | 3.36e-164 | 477 |
| Msa0122610 | MtrunA17_Chr3g0102941 | 76.429 | 140 | 17 | 2 | 104 | 241 | 15 | 140 | 4.32e-64 | 197 |
| Msa0122610 | MtrunA17_Chr7g0232251 | 35.271 | 258 | 166 | 1 | 2 | 258 | 618 | 875 | 3.79e-46 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122610 | AT1G55250.2 | 60.769 | 260 | 102 | 0 | 1 | 260 | 124 | 383 | 3.19e-112 | 328 |
| Msa0122610 | AT1G55250.4 | 57.664 | 274 | 102 | 1 | 1 | 260 | 124 | 397 | 3.51e-108 | 318 |
| Msa0122610 | AT1G55250.5 | 60.769 | 260 | 102 | 0 | 1 | 260 | 622 | 881 | 3.71e-107 | 330 |
| Msa0122610 | AT1G55250.1 | 60.769 | 260 | 102 | 0 | 1 | 260 | 641 | 900 | 9.48e-107 | 329 |
| Msa0122610 | AT1G55250.3 | 57.664 | 274 | 102 | 1 | 1 | 260 | 626 | 899 | 2.48e-103 | 320 |
| Msa0122610 | AT2G44950.1 | 38.697 | 261 | 157 | 2 | 2 | 260 | 619 | 878 | 5.82e-52 | 181 |
Find 51 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGAAAATTGATTGCTTAT+TGG | 0.134150 | 1_3:+49375436 | None:intergenic |
| CTTCCACATCTTTCTGAATT+TGG | 0.157200 | 1_3:+49377525 | None:intergenic |
| CCTTGTGCTGTTTAATGTTT+TGG | 0.226756 | 1_3:-49375517 | Msa0122610:three_prime_UTR |
| CAGAATTCAGCTCAGCAATT+TGG | 0.228587 | 1_3:+49376704 | None:intergenic |
| CAAACAAACAACATTGAAAA+AGG | 0.303597 | 1_3:+49375492 | None:intergenic |
| TTCCCACCTGGCAAACTCTA+AGG | 0.353582 | 1_3:+49377616 | None:intergenic |
| AGAGTTTGCCAGGTGGGAAT+TGG | 0.354577 | 1_3:-49377612 | Msa0122610:CDS |
| TCAATGTTCCTGTAGACTAT+TGG | 0.374103 | 1_3:-49378690 | Msa0122610:intron |
| CCTGCCTGTGGAACAGCATT+TGG | 0.404398 | 1_3:-49375599 | Msa0122610:CDS |
| AACCTCGATTTCAGATATAT+AGG | 0.404698 | 1_3:+49378805 | None:intergenic |
| ATTTAGCGGCTTCTGATAGA+AGG | 0.423094 | 1_3:+49377669 | None:intergenic |
| TATTGATTGCCTTCATATGA+AGG | 0.435323 | 1_3:-49378963 | None:intergenic |
| TCAAGATTTCTTTGTATACA+TGG | 0.438637 | 1_3:+49375641 | None:intergenic |
| CAGCCGCCTTAGAGTTTGCC+AGG | 0.439108 | 1_3:-49377622 | Msa0122610:CDS |
| GGAAGCTTGTGAAAAGGAAT+TGG | 0.451020 | 1_3:-49377507 | Msa0122610:CDS |
| TTCATCTTGAGTACATTTAG+CGG | 0.459767 | 1_3:+49377655 | None:intergenic |
| TCGTTTACTCCTTCATATGA+AGG | 0.489269 | 1_3:+49378954 | None:intergenic |
| CGCCTTAGAGTTTGCCAGGT+GGG | 0.494648 | 1_3:-49377618 | Msa0122610:CDS |
| TTATGTCATGCAGGAGTTCA+CGG | 0.495128 | 1_3:-49376762 | Msa0122610:intron |
| TTCCACAGGCAGGACATTTG+CGG | 0.497983 | 1_3:+49375609 | None:intergenic |
| AGGCAGGACATTTGCGGTGA+CGG | 0.501630 | 1_3:+49375615 | None:intergenic |
| TGAGGCTATTAAAGTTAAAG+AGG | 0.509176 | 1_3:-49378840 | Msa0122610:CDS |
| CTTGTCTAAAAGTACTATCA+AGG | 0.510264 | 1_3:+49375468 | None:intergenic |
| CTGTCCAAATGCTGTTCCAC+AGG | 0.513830 | 1_3:+49375595 | None:intergenic |
| CCAAATGCTGTTCCACAGGC+AGG | 0.515641 | 1_3:+49375599 | None:intergenic |
| AGATGTGGAAGCTTGTGAAA+AGG | 0.521111 | 1_3:-49377513 | Msa0122610:CDS |
| CTGTTGAAGTTGATCAGCTA+AGG | 0.522647 | 1_3:+49377863 | None:intergenic |
| AAAAGGAATTGGACAGTGAA+AGG | 0.524187 | 1_3:-49377496 | Msa0122610:intron |
| CCAACATCTGTTGCAGCAAG+TGG | 0.560620 | 1_3:-49378637 | Msa0122610:CDS |
| TATTAAAGTTAAAGAGGCTG+AGG | 0.563348 | 1_3:-49378834 | Msa0122610:CDS |
| GAGGGATGACTATAATATCA+AGG | 0.565391 | 1_3:-49378610 | Msa0122610:intron |
| GGAATTGGCTGATGCTGAGA+AGG | 0.575750 | 1_3:-49377597 | Msa0122610:CDS |
| CCACTTGCTGCAACAGATGT+TGG | 0.580687 | 1_3:+49378637 | None:intergenic |
| AACCTATATATCTGAAATCG+AGG | 0.589196 | 1_3:-49378807 | Msa0122610:intron |
| AGCATCAGCCAATTCCCACC+TGG | 0.596588 | 1_3:+49377604 | None:intergenic |
| CGACCAAATTCAGAAAGATG+TGG | 0.602428 | 1_3:-49377528 | Msa0122610:CDS |
| ATTGCTGAGCTGAATTCTGA+AGG | 0.603898 | 1_3:-49376700 | Msa0122610:CDS |
| CACCGCAAATGTCCTGCCTG+TGG | 0.609399 | 1_3:-49375611 | Msa0122610:CDS |
| CTGTTCTGACCGTCCAAAGG+AGG | 0.610575 | 1_3:-49376608 | Msa0122610:intron |
| CCAAAACATTAAACAGCACA+AGG | 0.616290 | 1_3:+49375517 | None:intergenic |
| GTTGCAGCAAGTGGCTGAGA+GGG | 0.621288 | 1_3:-49378628 | Msa0122610:CDS |
| TGTCTGTTCTGACCGTCCAA+AGG | 0.626715 | 1_3:-49376611 | Msa0122610:CDS |
| GAGTTCACGGAAGAAGCTTG+AGG | 0.633563 | 1_3:-49376749 | Msa0122610:CDS |
| ATCAACAGATTGATAAGCGG+AGG | 0.634561 | 1_3:+49378919 | None:intergenic |
| TGTTGCAGCAAGTGGCTGAG+AGG | 0.640275 | 1_3:-49378629 | Msa0122610:CDS |
| TGCATCAACAGATTGATAAG+CGG | 0.666899 | 1_3:+49378916 | None:intergenic |
| GCTTGTATCAGAAAGCGTGA+AGG | 0.670954 | 1_3:-49377925 | Msa0122610:CDS |
| ATAGTAGGGCATATAAAACA+TGG | 0.677761 | 1_3:+49378885 | None:intergenic |
| CAAACTCTAAGGCGGCTGCG+AGG | 0.683577 | 1_3:+49377627 | None:intergenic |
| CCGCCTTAGAGTTTGCCAGG+TGG | 0.688256 | 1_3:-49377619 | Msa0122610:CDS |
| CCACCTGGCAAACTCTAAGG+CGG | 0.716860 | 1_3:+49377619 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAAAAATGAAGAAA+TGG | + | chr1_3:49376016-49376035 | None:intergenic | 10.0% |
| !!! | ATTTCTTCATTTTTTTTTAA+AGG | - | chr1_3:49376015-49376034 | Msa0122610:intron | 10.0% |
| !!! | TTTTTTTTAAAGGTTTTTAT+CGG | - | chr1_3:49376025-49376044 | Msa0122610:intron | 10.0% |
| !! | TTTACATAAATAATTTCATT+TGG | - | chr1_3:49376291-49376310 | Msa0122610:intron | 10.0% |
| !! | TTACATAAATAATTTCATTT+GGG | - | chr1_3:49376292-49376311 | Msa0122610:intron | 10.0% |
| !! | AAAATAAAATTTATAAGTAG+GGG | + | chr1_3:49376522-49376541 | None:intergenic | 10.0% |
| !! | CAAAATAAAATTTATAAGTA+GGG | + | chr1_3:49376523-49376542 | None:intergenic | 10.0% |
| !! | TCAAAATAAAATTTATAAGT+AGG | + | chr1_3:49376524-49376543 | None:intergenic | 10.0% |
| !!! | AATTGATTTTGAAAATATTC+AGG | - | chr1_3:49375925-49375944 | Msa0122610:intron | 15.0% |
| !! | AAAAAAAAAAATAATCGCAA+AGG | + | chr1_3:49375958-49375977 | None:intergenic | 15.0% |
| !!! | AATTTTTTTAAACAACTGAT+GGG | - | chr1_3:49376198-49376217 | Msa0122610:intron | 15.0% |
| !! | TACATAAATAATTTCATTTG+GGG | - | chr1_3:49376293-49376312 | Msa0122610:intron | 15.0% |
| !! | AAATAAAATTTATAAGTAGG+GGG | + | chr1_3:49376521-49376540 | None:intergenic | 15.0% |
| !! | TGTTTATACAGTTAATTAAA+AGG | - | chr1_3:49376915-49376934 | Msa0122610:intron | 15.0% |
| !!! | TTTTGTTAAATGTTTTGTTT+AGG | + | chr1_3:49377270-49377289 | None:intergenic | 15.0% |
| !!! | TTTTATGGTTAAATTAACTT+GGG | - | chr1_3:49377736-49377755 | Msa0122610:intron | 15.0% |
| !!! | TAAGCATCTATATTTTTATT+TGG | - | chr1_3:49377797-49377816 | Msa0122610:intron | 15.0% |
| !! | TTTCAGTTATTATAAAAAAG+AGG | - | chr1_3:49378148-49378167 | Msa0122610:intron | 15.0% |
| !! | TTCAGTTATTATAAAAAAGA+GGG | - | chr1_3:49378149-49378168 | Msa0122610:intron | 15.0% |
| !! | GATAAATTACAAAACTTATT+TGG | - | chr1_3:49378459-49378478 | Msa0122610:intron | 15.0% |
| !! | TAAGTATAGTAAATCTTTAG+TGG | + | chr1_3:49376126-49376145 | None:intergenic | 20.0% |
| !!! | GAATTTTTTTAAACAACTGA+TGG | - | chr1_3:49376197-49376216 | Msa0122610:intron | 20.0% |
| !! | TTTGCAATATGATAAAAACA+AGG | + | chr1_3:49376327-49376346 | None:intergenic | 20.0% |
| !! | TTCTGTTTAAAAATATGTTC+CGG | + | chr1_3:49376847-49376866 | None:intergenic | 20.0% |
| !!! | TAAACATGTTGATTTTAAGA+TGG | - | chr1_3:49376994-49377013 | Msa0122610:intron | 20.0% |
| !!! | GTTCAGTTTTTAATTAATTG+TGG | + | chr1_3:49377197-49377216 | None:intergenic | 20.0% |
| !!! | CTTTTATGGTTAAATTAACT+TGG | - | chr1_3:49377735-49377754 | Msa0122610:intron | 20.0% |
| !!! | CATAAGTCATTTTTATGAAT+GGG | + | chr1_3:49377824-49377843 | None:intergenic | 20.0% |
| !! | CTTATTCAATAAACTATACT+AGG | + | chr1_3:49377924-49377943 | None:intergenic | 20.0% |
| !! | TAGAATATAACACTAAGATA+AGG | - | chr1_3:49378004-49378023 | Msa0122610:intron | 20.0% |
| !! | AAGTTAATTAAGAGTTGTTT+AGG | - | chr1_3:49378249-49378268 | Msa0122610:intron | 20.0% |
| !!! | AACTTCTTTATCTTGAATTT+TGG | - | chr1_3:49378411-49378430 | Msa0122610:intron | 20.0% |
| !!! | ACTTCTTTATCTTGAATTTT+GGG | - | chr1_3:49378412-49378431 | Msa0122610:intron | 20.0% |
| !!! | CAGATTTTTTCTGAATAGTA+GGG | + | chr1_3:49375413-49375432 | None:intergenic | 25.0% |
| ! | TATAAACAGTTGTTAGTTGA+CGG | - | chr1_3:49375535-49375554 | Msa0122610:three_prime_UTR | 25.0% |
| ! | AGCATTAATTTATCATCAAC+TGG | + | chr1_3:49375806-49375825 | None:intergenic | 25.0% |
| !! | TTTTTGTGTTAAGAAAGCAA+TGG | + | chr1_3:49375858-49375877 | None:intergenic | 25.0% |
| ! | ATAGTAAATCTTTAGTGGTT+TGG | + | chr1_3:49376121-49376140 | None:intergenic | 25.0% |
| ! | GATTGTAAATAGTGAAAAAC+AGG | - | chr1_3:49376473-49376492 | Msa0122610:intron | 25.0% |
| ! | AAACAGAAATATTCACATCA+AGG | - | chr1_3:49376859-49376878 | Msa0122610:intron | 25.0% |
| ! | AACAGAGAGAAAATTTAGTT+TGG | - | chr1_3:49376970-49376989 | Msa0122610:intron | 25.0% |
| ! | CTTTAATTCATGTAACTGTT+CGG | - | chr1_3:49377103-49377122 | Msa0122610:intron | 25.0% |
| ! | TACGAAACGATGTAAAATAT+AGG | + | chr1_3:49377152-49377171 | None:intergenic | 25.0% |
| ! | TAACTAACACCCAATAAAAA+TGG | - | chr1_3:49377237-49377256 | Msa0122610:intron | 25.0% |
| !!! | CCATAAGTCATTTTTATGAA+TGG | + | chr1_3:49377825-49377844 | None:intergenic | 25.0% |
| ! | CCATTCATAAAAATGACTTA+TGG | - | chr1_3:49377822-49377841 | Msa0122610:CDS | 25.0% |
| ! | ATTCAATAAACTATACTAGG+AGG | + | chr1_3:49377921-49377940 | None:intergenic | 25.0% |
| ! | GCAATAGTTGCAATATTTAT+TGG | - | chr1_3:49378060-49378079 | Msa0122610:intron | 25.0% |
| ! | TGCAATATTTATTGGAATCT+AGG | - | chr1_3:49378068-49378087 | Msa0122610:intron | 25.0% |
| ! | AGTTTCAGTTATTAAAGAGA+GGG | - | chr1_3:49378094-49378113 | Msa0122610:intron | 25.0% |
| ! | AGTTTCAGTTATAAAAGAGA+GGG | - | chr1_3:49378201-49378220 | Msa0122610:intron | 25.0% |
| ! | TTCCAATAAATATTACACCT+CGG | - | chr1_3:49378295-49378314 | Msa0122610:intron | 25.0% |
| ! | GAAATGGAAATAATAAACCA+GGG | + | chr1_3:49378337-49378356 | None:intergenic | 25.0% |
| ! | TGAAATGGAAATAATAAACC+AGG | + | chr1_3:49378338-49378357 | None:intergenic | 25.0% |
| !! | CTTCTTTATCTTGAATTTTG+GGG | - | chr1_3:49378413-49378432 | Msa0122610:intron | 25.0% |
| !!! | TCTATCAGATTGTTTTGAAA+TGG | - | chr1_3:49378437-49378456 | Msa0122610:intron | 25.0% |
| !! | AACTTATTTGGCATATTTTC+TGG | - | chr1_3:49378471-49378490 | Msa0122610:intron | 25.0% |
| !! | ACTTATTTGGCATATTTTCT+GGG | - | chr1_3:49378472-49378491 | Msa0122610:intron | 25.0% |
| ! | TCAAGATTTCTTTGTATACA+TGG | + | chr1_3:49378643-49378662 | None:intergenic | 25.0% |
| ! | CAAACAAACAACATTGAAAA+AGG | + | chr1_3:49378792-49378811 | None:intergenic | 25.0% |
| !! | TCCAATAAGCAATCAATTTT+CGG | - | chr1_3:49378844-49378863 | Msa0122610:CDS | 25.0% |
| !! | AATTTTCGGATTGTAGATAT+TGG | - | chr1_3:49378858-49378877 | Msa0122610:exon | 25.0% |
| !! | ATTTTCGGATTGTAGATATT+GGG | - | chr1_3:49378859-49378878 | Msa0122610:exon | 25.0% |
| !!! | ACTTGTTTTGTGTATGATAT+TGG | - | chr1_3:49378891-49378910 | Msa0122610:five_prime_UTR | 25.0% |
| ATAGTAGGGCATATAAAACA+TGG | + | chr1_3:49375399-49375418 | None:intergenic | 30.0% | |
| !!! | CCAGATTTTTTCTGAATAGT+AGG | + | chr1_3:49375414-49375433 | None:intergenic | 30.0% |
| CCTACTATTCAGAAAAAATC+TGG | - | chr1_3:49375411-49375430 | Msa0122610:three_prime_UTR | 30.0% | |
| TGAGGCTATTAAAGTTAAAG+AGG | - | chr1_3:49375441-49375460 | Msa0122610:three_prime_UTR | 30.0% | |
| TATTAAAGTTAAAGAGGCTG+AGG | - | chr1_3:49375447-49375466 | Msa0122610:three_prime_UTR | 30.0% | |
| ! | AACCTATATATCTGAAATCG+AGG | - | chr1_3:49375474-49375493 | Msa0122610:three_prime_UTR | 30.0% |
| AACCTCGATTTCAGATATAT+AGG | + | chr1_3:49375479-49375498 | None:intergenic | 30.0% | |
| ATAAACAGTTGTTAGTTGAC+GGG | - | chr1_3:49375536-49375555 | Msa0122610:three_prime_UTR | 30.0% | |
| AAAGTAGCATTTACAACTAC+TGG | + | chr1_3:49375712-49375731 | None:intergenic | 30.0% | |
| ACGATTAAAAGTTAGTTGCA+AGG | - | chr1_3:49376059-49376078 | Msa0122610:intron | 30.0% | |
| !! | CTGTTTTCAAGATTTAGCAT+TGG | + | chr1_3:49376088-49376107 | None:intergenic | 30.0% |
| ! | AAAGTTGATTCTAGCAGATA+TGG | + | chr1_3:49376224-49376243 | None:intergenic | 30.0% |
| AATTAAATTATCAGCCAAGC+TGG | + | chr1_3:49376250-49376269 | None:intergenic | 30.0% | |
| TTCATCTTGAGTACATTTAG+CGG | + | chr1_3:49376629-49376648 | None:intergenic | 30.0% | |
| AAAACCTAATTGCGAAAACT+TGG | + | chr1_3:49376945-49376964 | None:intergenic | 30.0% | |
| TTGAACAACAAAATAGTTGC+TGG | - | chr1_3:49377053-49377072 | Msa0122610:intron | 30.0% | |
| AAGAGATATCTCTCAAAAGA+TGG | + | chr1_3:49377298-49377317 | None:intergenic | 30.0% | |
| GTGTTAATGTTATGCATTGA+TGG | - | chr1_3:49377429-49377448 | Msa0122610:intron | 30.0% | |
| ATAAAAGCAAGAACTGTTGT+TGG | + | chr1_3:49377722-49377741 | None:intergenic | 30.0% | |
| !! | AACAACAGTTCTTGCTTTTA+TGG | - | chr1_3:49377721-49377740 | Msa0122610:intron | 30.0% |
| ! | TATGGTTAAATTAACTTGGG+AGG | - | chr1_3:49377739-49377758 | Msa0122610:intron | 30.0% |
| ! | ATGGTTAAATTAACTTGGGA+GGG | - | chr1_3:49377740-49377759 | Msa0122610:intron | 30.0% |
| ! | GCTGAAAACAACTTTTGAAT+AGG | + | chr1_3:49377848-49377867 | None:intergenic | 30.0% |
| GAGTTTCAGTTATTAAAGAG+AGG | - | chr1_3:49378093-49378112 | Msa0122610:intron | 30.0% | |
| GAGTTTCAGTTATAAAAGAG+AGG | - | chr1_3:49378200-49378219 | Msa0122610:intron | 30.0% | |
| TCCAATAAATATTACACCTC+GGG | - | chr1_3:49378296-49378315 | Msa0122610:intron | 30.0% | |
| ! | ATCTCTTTGAACTTTGAAGA+AGG | - | chr1_3:49378519-49378538 | Msa0122610:intron | 30.0% |
| AAACTCTTAGATAATGCTGT+TGG | + | chr1_3:49378568-49378587 | None:intergenic | 30.0% | |
| !! | CTTGTCTAAAAGTACTATCA+AGG | + | chr1_3:49378816-49378835 | None:intergenic | 30.0% |
| TCCGAAAATTGATTGCTTAT+TGG | + | chr1_3:49378848-49378867 | None:intergenic | 30.0% | |
| ! | TTTTCGGATTGTAGATATTG+GGG | - | chr1_3:49378860-49378879 | Msa0122610:exon | 30.0% |
| TGCATCAACAGATTGATAAG+CGG | + | chr1_3:49375368-49375387 | None:intergenic | 35.0% | |
| AAAAAATCTGGAGATGACTG+AGG | - | chr1_3:49375423-49375442 | Msa0122610:three_prime_UTR | 35.0% | |
| GAAGAAAAGTGAAGTCATGA+AGG | + | chr1_3:49375503-49375522 | None:intergenic | 35.0% | |
| TCAATGTTCCTGTAGACTAT+TGG | - | chr1_3:49375591-49375610 | Msa0122610:CDS | 35.0% | |
| GAGGGATGACTATAATATCA+AGG | - | chr1_3:49375671-49375690 | Msa0122610:CDS | 35.0% | |
| ! | CAGATGTCTTTGTTATGTCT+AGG | - | chr1_3:49375769-49375788 | Msa0122610:intron | 35.0% |
| ATGTTGATACGTTGAAGAAC+TGG | - | chr1_3:49375893-49375912 | Msa0122610:intron | 35.0% | |
| CTTCCACATCTTTCTGAATT+TGG | + | chr1_3:49376759-49376778 | None:intergenic | 35.0% | |
| AAAAGGAATTGGACAGTGAA+AGG | - | chr1_3:49376785-49376804 | Msa0122610:intron | 35.0% | |
| CTTAGTCATTCGATCAAGTT+TGG | - | chr1_3:49376819-49376838 | Msa0122610:intron | 35.0% | |
| ! | CTTACCAAGTTTTCGCAATT+AGG | - | chr1_3:49376938-49376957 | Msa0122610:intron | 35.0% |
| TTGCTGGAAATGAAAATGAC+AGG | - | chr1_3:49377069-49377088 | Msa0122610:intron | 35.0% | |
| AGATATCTCTTTACTCGTCT+AGG | - | chr1_3:49377307-49377326 | Msa0122610:intron | 35.0% | |
| TAGCATTTGCATTTCACCTA+GGG | + | chr1_3:49377334-49377353 | None:intergenic | 35.0% | |
| ATAGCATTTGCATTTCACCT+AGG | + | chr1_3:49377335-49377354 | None:intergenic | 35.0% | |
| ! | TGTCTAGATTCTGGAAAGTT+TGG | - | chr1_3:49377382-49377401 | Msa0122610:intron | 35.0% |
| ! | TATGCATTGATGGTTGACTT+TGG | - | chr1_3:49377439-49377458 | Msa0122610:intron | 35.0% |
| ATGTGTTGAGCCAATTTAGA+GGG | + | chr1_3:49377489-49377508 | None:intergenic | 35.0% | |
| TATGTGTTGAGCCAATTTAG+AGG | + | chr1_3:49377490-49377509 | None:intergenic | 35.0% | |
| AGAACTGTTGTTGGAAAAGT+TGG | + | chr1_3:49377713-49377732 | None:intergenic | 35.0% | |
| TAGTTCGTAAGCTACAATGA+CGG | + | chr1_3:49377885-49377904 | None:intergenic | 35.0% | |
| ! | AATGCACACATGTTGTCTTT+TGG | - | chr1_3:49377967-49377986 | Msa0122610:intron | 35.0% |
| TAGAAACTTGTAGAAGCTGT+AGG | - | chr1_3:49378034-49378053 | Msa0122610:intron | 35.0% | |
| TTCTTAATGACTAACCCTCT+AGG | + | chr1_3:49378123-49378142 | None:intergenic | 35.0% | |
| TAAAAAAGAGGGAAGTCTAG+AGG | - | chr1_3:49378160-49378179 | Msa0122610:intron | 35.0% | |
| AAAAAAGAGGGAAGTCTAGA+GGG | - | chr1_3:49378161-49378180 | Msa0122610:intron | 35.0% | |
| ACCCGAGGTGTAATATTTAT+TGG | + | chr1_3:49378300-49378319 | None:intergenic | 35.0% | |
| ATAAATATTACACCTCGGGT+AGG | - | chr1_3:49378300-49378319 | Msa0122610:intron | 35.0% | |
| GGAAATAATAAACCAGGGTT+TGG | + | chr1_3:49378332-49378351 | None:intergenic | 35.0% | |
| CAGTGGTGATAAAACTGAAA+TGG | + | chr1_3:49378353-49378372 | None:intergenic | 35.0% | |
| GAGTTTGATCTGTATTTGAC+AGG | - | chr1_3:49378582-49378601 | Msa0122610:intron | 35.0% | |
| CCAAAACATTAAACAGCACA+AGG | + | chr1_3:49378767-49378786 | None:intergenic | 35.0% | |
| !!! | CCTTGTGCTGTTTAATGTTT+TGG | - | chr1_3:49378764-49378783 | Msa0122610:intron | 35.0% |
| ATCAACAGATTGATAAGCGG+AGG | + | chr1_3:49375365-49375384 | None:intergenic | 40.0% | |
| ATGCTTGACCAATAGTCTAC+AGG | + | chr1_3:49375602-49375621 | None:intergenic | 40.0% | |
| GACATAACAAAGACATCTGC+AGG | + | chr1_3:49375768-49375787 | None:intergenic | 40.0% | |
| ! | GAATCAACTTTTGACCAGCT+TGG | - | chr1_3:49376233-49376252 | Msa0122610:intron | 40.0% |
| ! | CTGTTGAAGTTGATCAGCTA+AGG | + | chr1_3:49376421-49376440 | None:intergenic | 40.0% |
| ATTTAGCGGCTTCTGATAGA+AGG | + | chr1_3:49376615-49376634 | None:intergenic | 40.0% | |
| CGACCAAATTCAGAAAGATG+TGG | - | chr1_3:49376753-49376772 | Msa0122610:intron | 40.0% | |
| AGATGTGGAAGCTTGTGAAA+AGG | - | chr1_3:49376768-49376787 | Msa0122610:intron | 40.0% | |
| GGAAGCTTGTGAAAAGGAAT+TGG | - | chr1_3:49376774-49376793 | Msa0122610:intron | 40.0% | |
| CATTCGATCAAGTTTGGATC+CGG | - | chr1_3:49376825-49376844 | Msa0122610:intron | 40.0% | |
| ACTAAACCTCACTTAGTGGA+GGG | + | chr1_3:49376894-49376913 | None:intergenic | 40.0% | |
| ACACACTAAACCTCACTTAG+TGG | + | chr1_3:49376898-49376917 | None:intergenic | 40.0% | |
| !!! | GGACTGCTGCCATTTTTATT+GGG | + | chr1_3:49377249-49377268 | None:intergenic | 40.0% |
| !!! | AGGACTGCTGCCATTTTTAT+TGG | + | chr1_3:49377250-49377269 | None:intergenic | 40.0% |
| GAGTGAAATGCCCTCTAAAT+TGG | - | chr1_3:49377476-49377495 | Msa0122610:intron | 40.0% | |
| CTCATCCAATTATGTCATGC+AGG | - | chr1_3:49377510-49377529 | Msa0122610:CDS | 40.0% | |
| GAACTCCTGCATGACATAAT+TGG | + | chr1_3:49377518-49377537 | None:intergenic | 40.0% | |
| TTATGTCATGCAGGAGTTCA+CGG | - | chr1_3:49377519-49377538 | Msa0122610:CDS | 40.0% | |
| CAGAATTCAGCTCAGCAATT+TGG | + | chr1_3:49377580-49377599 | None:intergenic | 40.0% | |
| ATTGCTGAGCTGAATTCTGA+AGG | - | chr1_3:49377581-49377600 | Msa0122610:CDS | 40.0% | |
| !!! | CTGTTTTTACCTCCTTTGGA+CGG | + | chr1_3:49377685-49377704 | None:intergenic | 40.0% |
| ! | CTGTTGTTGGAAAAGTTGGT+TGG | + | chr1_3:49377709-49377728 | None:intergenic | 40.0% |
| AGTTCGTAAGCTACAATGAC+GGG | + | chr1_3:49377884-49377903 | None:intergenic | 40.0% | |
| TAAAAGAGAGGGAAGTCTAG+AGG | - | chr1_3:49378212-49378231 | Msa0122610:intron | 40.0% | |
| AAAAGAGAGGGAAGTCTAGA+GGG | - | chr1_3:49378213-49378232 | Msa0122610:intron | 40.0% | |
| TTTAGGAGAGAAGTTCTCAC+TGG | - | chr1_3:49378266-49378285 | Msa0122610:intron | 40.0% | |
| AGGAGTTGGGCATGGAAAAA+TGG | + | chr1_3:49375748-49375767 | None:intergenic | 45.0% | |
| CAAAGACATCTGCAGGAGTT+GGG | + | chr1_3:49375761-49375780 | None:intergenic | 45.0% | |
| ACAAAGACATCTGCAGGAGT+TGG | + | chr1_3:49375762-49375781 | None:intergenic | 45.0% | |
| ! | GCTTGTATCAGAAAGCGTGA+AGG | - | chr1_3:49376356-49376375 | Msa0122610:intron | 45.0% |
| GGCTAAGTAGCAGAGGAAAT+AGG | + | chr1_3:49376500-49376519 | None:intergenic | 45.0% | |
| CACTAAACCTCACTTAGTGG+AGG | + | chr1_3:49376895-49376914 | None:intergenic | 45.0% | |
| CTTGTGCTGTGTCTAGATTC+TGG | - | chr1_3:49377373-49377392 | Msa0122610:intron | 45.0% | |
| CGTCCAAAGGAGGTAAAAAC+AGG | - | chr1_3:49377683-49377702 | Msa0122610:intron | 45.0% | |
| !!! | TGGCCTGTTTTTACCTCCTT+TGG | + | chr1_3:49377689-49377708 | None:intergenic | 45.0% |
| TTAAAGAGAGGGAAGCCTAG+AGG | - | chr1_3:49378105-49378124 | Msa0122610:intron | 45.0% | |
| TAAAGAGAGGGAAGCCTAGA+GGG | - | chr1_3:49378106-49378125 | Msa0122610:intron | 45.0% | |
| TGAGCTTAAGAGCTCTACAG+TGG | + | chr1_3:49378370-49378389 | None:intergenic | 45.0% | |
| ! | CCACTTGCTGCAACAGATGT+TGG | + | chr1_3:49375647-49375666 | None:intergenic | 50.0% |
| CCAACATCTGTTGCAGCAAG+TGG | - | chr1_3:49375644-49375663 | Msa0122610:CDS | 50.0% | |
| TTCCCACCTGGCAAACTCTA+AGG | + | chr1_3:49376668-49376687 | None:intergenic | 50.0% | |
| AGAGTTTGCCAGGTGGGAAT+TGG | - | chr1_3:49376669-49376688 | Msa0122610:CDS | 50.0% | |
| GGAATTGGCTGATGCTGAGA+AGG | - | chr1_3:49376684-49376703 | Msa0122610:CDS | 50.0% | |
| AAGCTACCCTCCACTAAGTG+AGG | - | chr1_3:49376885-49376904 | Msa0122610:intron | 50.0% | |
| ! | CTTTACTCGTCTAGGACCCT+AGG | - | chr1_3:49377315-49377334 | Msa0122610:intron | 50.0% |
| GAGTTCACGGAAGAAGCTTG+AGG | - | chr1_3:49377532-49377551 | Msa0122610:CDS | 50.0% | |
| TGTCTGTTCTGACCGTCCAA+AGG | - | chr1_3:49377670-49377689 | Msa0122610:CDS | 50.0% | |
| GTTTGGATAACTCCTACCCG+AGG | + | chr1_3:49378315-49378334 | None:intergenic | 50.0% | |
| GGTAGGAGTTATCCAAACCC+TGG | - | chr1_3:49378317-49378336 | Msa0122610:intron | 50.0% | |
| TTCCACAGGCAGGACATTTG+CGG | + | chr1_3:49378675-49378694 | None:intergenic | 50.0% | |
| CTGTCCAAATGCTGTTCCAC+AGG | + | chr1_3:49378689-49378708 | None:intergenic | 50.0% | |
| TGTTGCAGCAAGTGGCTGAG+AGG | - | chr1_3:49375652-49375671 | Msa0122610:CDS | 55.0% | |
| GTTGCAGCAAGTGGCTGAGA+GGG | - | chr1_3:49375653-49375672 | Msa0122610:CDS | 55.0% | |
| ACATCTGCAGGAGTTGGGCA+TGG | + | chr1_3:49375756-49375775 | None:intergenic | 55.0% | |
| AGTAGGGGGCTAAGTAGCAG+AGG | + | chr1_3:49376507-49376526 | None:intergenic | 55.0% | |
| ! | CCACCTGGCAAACTCTAAGG+CGG | + | chr1_3:49376665-49376684 | None:intergenic | 55.0% |
| CGCCTTAGAGTTTGCCAGGT+GGG | - | chr1_3:49376663-49376682 | Msa0122610:CDS | 55.0% | |
| AGCATCAGCCAATTCCCACC+TGG | + | chr1_3:49376680-49376699 | None:intergenic | 55.0% | |
| CTGTTCTGACCGTCCAAAGG+AGG | - | chr1_3:49377673-49377692 | Msa0122610:CDS | 55.0% | |
| AGGCAGGACATTTGCGGTGA+CGG | + | chr1_3:49378669-49378688 | None:intergenic | 55.0% | |
| CCAAATGCTGTTCCACAGGC+AGG | + | chr1_3:49378685-49378704 | None:intergenic | 55.0% | |
| CCTGCCTGTGGAACAGCATT+TGG | - | chr1_3:49378682-49378701 | Msa0122610:intron | 55.0% | |
| !! | CAAACTCTAAGGCGGCTGCG+AGG | + | chr1_3:49376657-49376676 | None:intergenic | 60.0% |
| CAGCCGCCTTAGAGTTTGCC+AGG | - | chr1_3:49376659-49376678 | Msa0122610:CDS | 60.0% | |
| CCGCCTTAGAGTTTGCCAGG+TGG | - | chr1_3:49376662-49376681 | Msa0122610:CDS | 60.0% | |
| CACCGCAAATGTCCTGCCTG+TGG | - | chr1_3:49378670-49378689 | Msa0122610:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 49375328 | 49378975 | 49375328 | ID=Msa0122610;Name=Msa0122610 |
| chr1_3 | mRNA | 49375328 | 49378975 | 49375328 | ID=Msa0122610-mRNA-1;Parent=Msa0122610;Name=Msa0122610-mRNA-1;_AED=0.18;_eAED=0.18;_QI=108|1|1|1|1|1|6|240|260 |
| chr1_3 | exon | 49375328 | 49375699 | 49375328 | ID=Msa0122610-mRNA-1:exon:14958;Parent=Msa0122610-mRNA-1 |
| chr1_3 | exon | 49376609 | 49376771 | 49376609 | ID=Msa0122610-mRNA-1:exon:14957;Parent=Msa0122610-mRNA-1 |
| chr1_3 | exon | 49377497 | 49377699 | 49377497 | ID=Msa0122610-mRNA-1:exon:14956;Parent=Msa0122610-mRNA-1 |
| chr1_3 | exon | 49377809 | 49377946 | 49377809 | ID=Msa0122610-mRNA-1:exon:14955;Parent=Msa0122610-mRNA-1 |
| chr1_3 | exon | 49378611 | 49378697 | 49378611 | ID=Msa0122610-mRNA-1:exon:14954;Parent=Msa0122610-mRNA-1 |
| chr1_3 | exon | 49378808 | 49378975 | 49378808 | ID=Msa0122610-mRNA-1:exon:14953;Parent=Msa0122610-mRNA-1 |
| chr1_3 | five_prime_UTR | 49378868 | 49378975 | 49378868 | ID=Msa0122610-mRNA-1:five_prime_utr;Parent=Msa0122610-mRNA-1 |
| chr1_3 | CDS | 49378808 | 49378867 | 49378808 | ID=Msa0122610-mRNA-1:cds;Parent=Msa0122610-mRNA-1 |
| chr1_3 | CDS | 49378611 | 49378697 | 49378611 | ID=Msa0122610-mRNA-1:cds;Parent=Msa0122610-mRNA-1 |
| chr1_3 | CDS | 49377809 | 49377946 | 49377809 | ID=Msa0122610-mRNA-1:cds;Parent=Msa0122610-mRNA-1 |
| chr1_3 | CDS | 49377497 | 49377699 | 49377497 | ID=Msa0122610-mRNA-1:cds;Parent=Msa0122610-mRNA-1 |
| chr1_3 | CDS | 49376609 | 49376771 | 49376609 | ID=Msa0122610-mRNA-1:cds;Parent=Msa0122610-mRNA-1 |
| chr1_3 | CDS | 49375568 | 49375699 | 49375568 | ID=Msa0122610-mRNA-1:cds;Parent=Msa0122610-mRNA-1 |
| chr1_3 | three_prime_UTR | 49375328 | 49375567 | 49375328 | ID=Msa0122610-mRNA-1:three_prime_utr;Parent=Msa0122610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
