Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001240 | KEH32106.1 | 71.930 | 57 | 14 | 2 | 1 | 56 | 12 | 67 | 1.37e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001240 | Msa0004920 | 0.801446 | 8.969881e-49 | -8.615850e-47 |
| Msa0001240 | Msa0015610 | 0.801593 | 8.369909e-49 | -8.615850e-47 |
| Msa0001240 | Msa0020930 | 0.813031 | 3.143984e-51 | -8.615850e-47 |
| Msa0001240 | Msa0034110 | 0.804744 | 1.864954e-49 | -8.615850e-47 |
| Msa0001240 | Msa0068680 | 0.816762 | 4.679414e-52 | -8.615850e-47 |
| Msa0001240 | Msa0074700 | 0.864358 | 1.287801e-64 | -8.615850e-47 |
| Msa0001240 | Msa0114060 | 0.816127 | 6.490612e-52 | -8.615850e-47 |
| Msa0001240 | Msa0122610 | 0.829991 | 3.775532e-55 | -8.615850e-47 |
| Msa0001240 | Msa0159930 | 0.817953 | 2.523901e-52 | -8.615850e-47 |
| Msa0001240 | Msa0166870 | 0.808194 | 3.491922e-50 | -8.615850e-47 |
| Msa0001240 | Msa0174110 | 0.810947 | 8.947252e-51 | -8.615850e-47 |
| Msa0001240 | Msa0309770 | 0.802110 | 6.552659e-49 | -8.615850e-47 |
| Msa0001240 | Msa0345970 | 0.804064 | 2.584653e-49 | -8.615850e-47 |
| Msa0001240 | Msa0389340 | 0.808067 | 3.716279e-50 | -8.615850e-47 |
| Msa0001240 | Msa0411160 | 0.810798 | 9.635162e-51 | -8.615850e-47 |
| Msa0001240 | Msa0411190 | 0.828821 | 7.264053e-55 | -8.615850e-47 |
| Msa0001240 | Msa0436760 | 0.801095 | 1.058253e-48 | -8.615850e-47 |
| Msa0001240 | Msa0477080 | 0.813909 | 2.015974e-51 | -8.615850e-47 |
| Msa0001240 | Msa0479970 | 0.815162 | 1.064625e-51 | -8.615850e-47 |
| Msa0001240 | Msa0493630 | 0.826604 | 2.475903e-54 | -8.615850e-47 |
| Msa0001240 | Msa0502100 | 0.802626 | 5.131818e-49 | -8.615850e-47 |
| Msa0001240 | Msa0521430 | 0.813375 | 2.642467e-51 | -8.615850e-47 |
| Msa0001240 | Msa0564140 | 0.814163 | 1.771581e-51 | -8.615850e-47 |
| Msa0001240 | Msa0599520 | 0.805620 | 1.222403e-49 | -8.615850e-47 |
| Msa0001240 | Msa0607050 | 0.803713 | 3.057021e-49 | -8.615850e-47 |
| Msa0001240 | Msa0688480 | 0.800560 | 1.361047e-48 | -8.615850e-47 |
| Msa0001240 | Msa0692230 | 0.804470 | 2.127558e-49 | -8.615850e-47 |
| Msa0001240 | Msa0740510 | 0.804772 | 1.839701e-49 | -8.615850e-47 |
| Msa0001240 | Msa0796700 | 0.800199 | 1.612415e-48 | -8.615850e-47 |
| Msa0001240 | Msa0802010 | 0.829992 | 3.772863e-55 | -8.615850e-47 |
| Msa0001240 | Msa0820770 | 0.808612 | 2.842675e-50 | -8.615850e-47 |
| Msa0001240 | Msa0861090 | 0.802993 | 4.310289e-49 | -8.615850e-47 |
| Msa0001240 | Msa0866950 | 0.811778 | 5.905180e-51 | -8.615850e-47 |
| Msa0001240 | Msa0869860 | 0.801177 | 1.018100e-48 | -8.615850e-47 |
| Msa0001240 | Msa0933230 | 0.801133 | 1.039592e-48 | -8.615850e-47 |
| Msa0001240 | Msa0935670 | 0.813313 | 2.727041e-51 | -8.615850e-47 |
| Msa0001240 | Msa0971090 | 0.813782 | 2.150376e-51 | -8.615850e-47 |
| Msa0001240 | Msa0981590 | 0.991067 | 1.011928e-185 | -8.615850e-47 |
| Msa0001240 | Msa1018100 | 0.811315 | 7.446662e-51 | -8.615850e-47 |
| Msa0001240 | Msa1089180 | 0.815778 | 7.765563e-52 | -8.615850e-47 |
| Msa0001240 | Msa1165920 | 0.817482 | 3.222970e-52 | -8.615850e-47 |
| Msa0001240 | Msa1170410 | 0.800321 | 1.522726e-48 | -8.615850e-47 |
| Msa0001240 | Msa1233910 | 0.804115 | 2.521509e-49 | -8.615850e-47 |
| Msa0001240 | Msa1384350 | 0.816093 | 6.603406e-52 | -8.615850e-47 |
| Msa0001240 | Msa1404300 | 0.806947 | 6.423134e-50 | -8.615850e-47 |
| Msa0001240 | Msa1411020 | 0.808279 | 3.348214e-50 | -8.615850e-47 |
| Msa0001240 | Msa1420490 | 0.810636 | 1.044707e-50 | -8.615850e-47 |
| Msa0001240 | Msa1423390 | 0.809434 | 1.895771e-50 | -8.615850e-47 |
| Msa0001240 | Msa1424290 | 0.804408 | 2.191884e-49 | -8.615850e-47 |
| Msa0001240 | Msa1434350 | 0.808579 | 2.889753e-50 | -8.615850e-47 |
| Msa0001240 | Msa1439320 | 0.809836 | 1.554018e-50 | -8.615850e-47 |
| Msa0001240 | Msa1440370 | 0.806010 | 1.012495e-49 | -8.615850e-47 |
| Msa0001240 | Msa1440810 | 0.809890 | 1.512876e-50 | -8.615850e-47 |
| Msa0001240 | Msa1452240 | 0.810999 | 8.718669e-51 | -8.615850e-47 |
| Msa0001240 | Msa1454120 | 0.841041 | 6.044198e-58 | -8.615850e-47 |
| Msa0001240 | Msa1460050 | 0.816787 | 4.618931e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001240 | MtrunA17_Chr7g0225321 | 73.214 | 56 | 14 | 1 | 2 | 56 | 1317 | 1372 | 5.26e-18 | 78.2 |
| Msa0001240 | MtrunA17_Chr4g0062671 | 74.545 | 55 | 13 | 1 | 2 | 55 | 651 | 705 | 1.14e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTACATGATAAGTCTA+TGG | 0.271462 | 1_1:+2970575 | None:intergenic |
| TATAATCCTGTATCAGAAAT+TGG | 0.299035 | 1_1:-2970498 | Msa0001240:CDS |
| AGACTTATCATGTAAGAAAA+AGG | 0.302888 | 1_1:-2970571 | Msa0001240:CDS |
| CTTCGGGAGTTTCAGAAGTT+TGG | 0.317582 | 1_1:+2968604 | Msa0001250:CDS |
| TTGGAAACATCTACCTCCTT+TGG | 0.322212 | 1_1:+2968530 | None:intergenic |
| ACCTCCTTTGGGAATTTCAT+TGG | 0.324151 | 1_1:+2968542 | None:intergenic |
| AATTTCATTGGGAACTTCAA+TGG | 0.351442 | 1_1:+2968554 | None:intergenic |
| GTTTCAGAAGTTTGGTCCTT+AGG | 0.359232 | 1_1:+2968612 | Msa0001250:CDS |
| AGCCCTCCAATTTCTGATAC+AGG | 0.379869 | 1_1:+2970492 | None:intergenic |
| GTGCACCAGATGTATATCTT+TGG | 0.388986 | 1_1:+2970450 | None:intergenic |
| TGGAAACATCTACCTCCTTT+GGG | 0.389226 | 1_1:+2968531 | None:intergenic |
| CCTCCTTTGGGAATTTCATT+GGG | 0.403091 | 1_1:+2968543 | None:intergenic |
| AGAGCTACATGTACTCCTTC+GGG | 0.412439 | 1_1:+2968588 | Msa0001250:CDS |
| TAGAGCTACATGTACTCCTT+CGG | 0.423197 | 1_1:+2968587 | Msa0001250:CDS |
| ATTTCATTGGGAACTTCAAT+GGG | 0.452362 | 1_1:+2968555 | None:intergenic |
| AGGAGTACATGTAGCTCTAA+AGG | 0.492159 | 1_1:-2968583 | Msa0001240:CDS |
| TGATACAGGATTATAACCGC+TGG | 0.521892 | 1_1:+2970506 | None:intergenic |
| AAGGAGCCTGAAGTGGATGA+TGG | 0.523800 | 1_1:-2970552 | Msa0001240:CDS |
| CACCAGATGTATATCTTTGG+TGG | 0.531664 | 1_1:+2970453 | None:intergenic |
| TTCCACCAAAGATATACATC+TGG | 0.534115 | 1_1:-2970455 | Msa0001240:intron |
| GTCGTAATGAAACTGATCAC+AGG | 0.546842 | 1_1:-2968408 | Msa0001240:CDS |
| GATACAGGATTATAACCGCT+GGG | 0.571042 | 1_1:+2970507 | None:intergenic |
| TTCACGTGATGAAGATCCTA+AGG | 0.572548 | 1_1:-2968628 | Msa0001240:CDS |
| AATCCTGTATCAGAAATTGG+AGG | 0.573062 | 1_1:-2970495 | Msa0001240:CDS |
| ATCCTGTATCAGAAATTGGA+GGG | 0.586746 | 1_1:-2970494 | Msa0001240:CDS |
| CCCAATGAAATTCCCAAAGG+AGG | 0.618350 | 1_1:-2968543 | Msa0001240:intron |
| TCGTAATGAAACTGATCACA+GGG | 0.663739 | 1_1:-2968407 | Msa0001240:CDS |
| GTTCCCAATGAAATTCCCAA+AGG | 0.691549 | 1_1:-2968546 | Msa0001240:CDS |
| CAAACTTCTGAAACTCCCGA+AGG | 0.723196 | 1_1:-2968603 | Msa0001240:CDS |
| CTGAAATCTGTTGAACCCAG+CGG | 0.725975 | 1_1:-2970522 | Msa0001240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTAAATAAAATATTTAGT+TGG | - | chr1_1:2970087-2970106 | Msa0001240:intron | 10.0% |
| !! | TCTTAAATAAAATATTTAGT+TGG | - | chr1_1:2970087-2970106 | Msa0001240:intron | 10.0% |
| !! | TATGATACTAAAAAATAAGA+AGG | + | chr1_1:2969520-2969539 | None:intergenic | 15.0% |
| !! | TATGATACTAAAAAATAAGA+AGG | + | chr1_1:2969520-2969539 | None:intergenic | 15.0% |
| !!! | GTTTTCAAATAATTTTTGCA+TGG | - | chr1_1:2969136-2969155 | Msa0001240:intron | 20.0% |
| !! | AATAAAATTGCAGGAAAATA+AGG | + | chr1_1:2969415-2969434 | None:intergenic | 20.0% |
| !!! | TAAGCTAAATTAATTTGGAA+GGG | - | chr1_1:2969942-2969961 | Msa0001240:intron | 20.0% |
| !!! | TCATAACCTTTTGTATTTTA+GGG | - | chr1_1:2970018-2970037 | Msa0001240:intron | 20.0% |
| !!! | ATTTGATAGTTTTGTTTGAT+AGG | - | chr1_1:2970053-2970072 | Msa0001240:intron | 20.0% |
| !! | TTATAGCAGTAAAGTAAAAT+AGG | + | chr1_1:2970116-2970135 | None:intergenic | 20.0% |
| !!! | GTTTTCAAATAATTTTTGCA+TGG | - | chr1_1:2969136-2969155 | Msa0001240:intron | 20.0% |
| !! | AATAAAATTGCAGGAAAATA+AGG | + | chr1_1:2969415-2969434 | None:intergenic | 20.0% |
| !!! | TAAGCTAAATTAATTTGGAA+GGG | - | chr1_1:2969942-2969961 | Msa0001240:intron | 20.0% |
| !!! | TCATAACCTTTTGTATTTTA+GGG | - | chr1_1:2970018-2970037 | Msa0001240:intron | 20.0% |
| !!! | ATTTGATAGTTTTGTTTGAT+AGG | - | chr1_1:2970053-2970072 | Msa0001240:intron | 20.0% |
| !! | TTATAGCAGTAAAGTAAAAT+AGG | + | chr1_1:2970116-2970135 | None:intergenic | 20.0% |
| ! | TTTCTTACATGATAAGTCTA+TGG | + | chr1_1:2968409-2968428 | None:intergenic | 25.0% |
| ! | AGACTTATCATGTAAGAAAA+AGG | - | chr1_1:2968410-2968429 | Msa0001240:CDS | 25.0% |
| ! | TATAATCCTGTATCAGAAAT+TGG | - | chr1_1:2968483-2968502 | Msa0001240:intron | 25.0% |
| !! | TTGTTGTTAGTTCTTTATTC+TGG | - | chr1_1:2968693-2968712 | Msa0001240:intron | 25.0% |
| !!! | GGCTTTTCTCTTATTTATAA+AGG | + | chr1_1:2969324-2969343 | None:intergenic | 25.0% |
| ! | TTATAAATAAGAGAAAAGCC+AGG | - | chr1_1:2969324-2969343 | Msa0001240:intron | 25.0% |
| ! | TATAAATAAGAGAAAAGCCA+GGG | - | chr1_1:2969325-2969344 | Msa0001240:intron | 25.0% |
| ! | AAATGATTTACAACCTCTTA+AGG | + | chr1_1:2969755-2969774 | None:intergenic | 25.0% |
| !! | ATTCTAACAACAAACTCTTT+TGG | + | chr1_1:2969890-2969909 | None:intergenic | 25.0% |
| ! | AAAATTACTCAAATAGCTGA+AGG | + | chr1_1:2969915-2969934 | None:intergenic | 25.0% |
| ! | TAGCCTAAGCTAAATTAATT+TGG | - | chr1_1:2969937-2969956 | Msa0001240:intron | 25.0% |
| !! | CTTCCAAATTAATTTAGCTT+AGG | + | chr1_1:2969943-2969962 | None:intergenic | 25.0% |
| !! | CTAAGCTAAATTAATTTGGA+AGG | - | chr1_1:2969941-2969960 | Msa0001240:intron | 25.0% |
| !! | AAGCTAAATTAATTTGGAAG+GGG | - | chr1_1:2969943-2969962 | Msa0001240:intron | 25.0% |
| !!! | GGATATTTTGTGGTTTTTTT+AGG | - | chr1_1:2969964-2969983 | Msa0001240:intron | 25.0% |
| !! | CTCATAACCTTTTGTATTTT+AGG | - | chr1_1:2970017-2970036 | Msa0001240:intron | 25.0% |
| !!! | CATAACCTTTTGTATTTTAG+GGG | - | chr1_1:2970019-2970038 | Msa0001240:intron | 25.0% |
| !!! | ATAACCTTTTGTATTTTAGG+GGG | - | chr1_1:2970020-2970039 | Msa0001240:intron | 25.0% |
| ! | AGCAAAGATTAACATCATAA+TGG | + | chr1_1:2970162-2970181 | None:intergenic | 25.0% |
| ! | AAGATTTGATCATAACTTGA+GGG | - | chr1_1:2970321-2970340 | Msa0001240:intron | 25.0% |
| ! | TGATTAGCATATTTCTTTCA+TGG | + | chr1_1:2970480-2970499 | None:intergenic | 25.0% |
| ! | AAATATGCTAATCAAAGTCA+AGG | - | chr1_1:2970486-2970505 | Msa0001240:CDS | 25.0% |
| ! | TTTCTTACATGATAAGTCTA+TGG | + | chr1_1:2968409-2968428 | None:intergenic | 25.0% |
| ! | AGACTTATCATGTAAGAAAA+AGG | - | chr1_1:2968410-2968429 | Msa0001240:CDS | 25.0% |
| ! | TATAATCCTGTATCAGAAAT+TGG | - | chr1_1:2968483-2968502 | Msa0001240:intron | 25.0% |
| !! | TTGTTGTTAGTTCTTTATTC+TGG | - | chr1_1:2968693-2968712 | Msa0001240:intron | 25.0% |
| !!! | GGCTTTTCTCTTATTTATAA+AGG | + | chr1_1:2969324-2969343 | None:intergenic | 25.0% |
| ! | TTATAAATAAGAGAAAAGCC+AGG | - | chr1_1:2969324-2969343 | Msa0001240:intron | 25.0% |
| ! | TATAAATAAGAGAAAAGCCA+GGG | - | chr1_1:2969325-2969344 | Msa0001240:intron | 25.0% |
| ! | AAATGATTTACAACCTCTTA+AGG | + | chr1_1:2969755-2969774 | None:intergenic | 25.0% |
| !! | ATTCTAACAACAAACTCTTT+TGG | + | chr1_1:2969890-2969909 | None:intergenic | 25.0% |
| ! | AAAATTACTCAAATAGCTGA+AGG | + | chr1_1:2969915-2969934 | None:intergenic | 25.0% |
| ! | TAGCCTAAGCTAAATTAATT+TGG | - | chr1_1:2969937-2969956 | Msa0001240:intron | 25.0% |
| !! | CTTCCAAATTAATTTAGCTT+AGG | + | chr1_1:2969943-2969962 | None:intergenic | 25.0% |
| !! | CTAAGCTAAATTAATTTGGA+AGG | - | chr1_1:2969941-2969960 | Msa0001240:intron | 25.0% |
| !! | AAGCTAAATTAATTTGGAAG+GGG | - | chr1_1:2969943-2969962 | Msa0001240:intron | 25.0% |
| !!! | GGATATTTTGTGGTTTTTTT+AGG | - | chr1_1:2969964-2969983 | Msa0001240:intron | 25.0% |
| !! | CTCATAACCTTTTGTATTTT+AGG | - | chr1_1:2970017-2970036 | Msa0001240:intron | 25.0% |
| !!! | CATAACCTTTTGTATTTTAG+GGG | - | chr1_1:2970019-2970038 | Msa0001240:intron | 25.0% |
| !!! | ATAACCTTTTGTATTTTAGG+GGG | - | chr1_1:2970020-2970039 | Msa0001240:intron | 25.0% |
| ! | AGCAAAGATTAACATCATAA+TGG | + | chr1_1:2970162-2970181 | None:intergenic | 25.0% |
| ! | AAGATTTGATCATAACTTGA+GGG | - | chr1_1:2970321-2970340 | Msa0001240:intron | 25.0% |
| ! | TGATTAGCATATTTCTTTCA+TGG | + | chr1_1:2970480-2970499 | None:intergenic | 25.0% |
| ! | AAATATGCTAATCAAAGTCA+AGG | - | chr1_1:2970486-2970505 | Msa0001240:CDS | 25.0% |
| ACATCCCAGAAAATACAAAA+GGG | + | chr1_1:2968625-2968644 | Msa0001250:CDS | 30.0% | |
| TACATCCCAGAAAATACAAA+AGG | + | chr1_1:2968626-2968645 | Msa0001250:CDS | 30.0% | |
| ! | TGCTTTGTTGGATATTGAAA+AGG | + | chr1_1:2968653-2968672 | Msa0001250:CDS | 30.0% |
| CAAAGAATTTCATGCTTTGT+TGG | + | chr1_1:2968665-2968684 | Msa0001250:CDS | 30.0% | |
| ACTGAAGCAAAATATAAGAC+AGG | + | chr1_1:2968884-2968903 | None:intergenic | 30.0% | |
| GATGTTATTCCCATTTAAGT+AGG | - | chr1_1:2968945-2968964 | Msa0001240:intron | 30.0% | |
| TATTCCCATTTAAGTAGGAT+CGG | - | chr1_1:2968950-2968969 | Msa0001240:intron | 30.0% | |
| TCACTTTCATTTCATCTTGT+AGG | - | chr1_1:2969244-2969263 | Msa0001240:intron | 30.0% | |
| ATTACTCTTTGACTCATTAC+AGG | + | chr1_1:2969272-2969291 | None:intergenic | 30.0% | |
| AATGAGTCAAAGAGTAATCA+AGG | - | chr1_1:2969274-2969293 | Msa0001240:intron | 30.0% | |
| ATGAGTCAAAGAGTAATCAA+GGG | - | chr1_1:2969275-2969294 | Msa0001240:intron | 30.0% | |
| GCAATATGGGAAATAGAAAT+AGG | - | chr1_1:2969297-2969316 | Msa0001240:intron | 30.0% | |
| ATTGCAGGAAATAAAATTGC+AGG | + | chr1_1:2969424-2969443 | None:intergenic | 30.0% | |
| AGTATCATACTTCCATTCAA+AGG | - | chr1_1:2969531-2969550 | Msa0001240:intron | 30.0% | |
| TGTTCATTACAACCTTTGAA+TGG | + | chr1_1:2969546-2969565 | None:intergenic | 30.0% | |
| AAATCATAAATGACTGCTTC+AGG | + | chr1_1:2969840-2969859 | None:intergenic | 30.0% | |
| !!! | GTTTTTTTAGGTTTGATAGC+AGG | - | chr1_1:2969976-2969995 | Msa0001240:intron | 30.0% |
| TTATGATCAAATCTTGCGTA+AGG | + | chr1_1:2970316-2970335 | None:intergenic | 30.0% | |
| CAAGATTTGATCATAACTTG+AGG | - | chr1_1:2970320-2970339 | Msa0001240:intron | 30.0% | |
| ATCATAACTTGAGGGTTTAA+GGG | - | chr1_1:2970329-2970348 | Msa0001240:intron | 30.0% | |
| ATTTCATTGGGAACTTCAAT+GGG | + | chr1_1:2970429-2970448 | None:intergenic | 30.0% | |
| AATTTCATTGGGAACTTCAA+TGG | + | chr1_1:2970430-2970449 | None:intergenic | 30.0% | |
| CATATTTCTTTCATGGCTAT+TGG | + | chr1_1:2970473-2970492 | None:intergenic | 30.0% | |
| ACATCCCAGAAAATACAAAA+GGG | + | chr1_1:2968625-2968644 | Msa0001250:CDS | 30.0% | |
| TACATCCCAGAAAATACAAA+AGG | + | chr1_1:2968626-2968645 | Msa0001250:CDS | 30.0% | |
| ! | TGCTTTGTTGGATATTGAAA+AGG | + | chr1_1:2968653-2968672 | Msa0001250:CDS | 30.0% |
| CAAAGAATTTCATGCTTTGT+TGG | + | chr1_1:2968665-2968684 | Msa0001250:CDS | 30.0% | |
| ACTGAAGCAAAATATAAGAC+AGG | + | chr1_1:2968884-2968903 | None:intergenic | 30.0% | |
| GATGTTATTCCCATTTAAGT+AGG | - | chr1_1:2968945-2968964 | Msa0001240:intron | 30.0% | |
| TATTCCCATTTAAGTAGGAT+CGG | - | chr1_1:2968950-2968969 | Msa0001240:intron | 30.0% | |
| TCACTTTCATTTCATCTTGT+AGG | - | chr1_1:2969244-2969263 | Msa0001240:intron | 30.0% | |
| ATTACTCTTTGACTCATTAC+AGG | + | chr1_1:2969272-2969291 | None:intergenic | 30.0% | |
| AATGAGTCAAAGAGTAATCA+AGG | - | chr1_1:2969274-2969293 | Msa0001240:intron | 30.0% | |
| ATGAGTCAAAGAGTAATCAA+GGG | - | chr1_1:2969275-2969294 | Msa0001240:intron | 30.0% | |
| GCAATATGGGAAATAGAAAT+AGG | - | chr1_1:2969297-2969316 | Msa0001240:intron | 30.0% | |
| ATTGCAGGAAATAAAATTGC+AGG | + | chr1_1:2969424-2969443 | None:intergenic | 30.0% | |
| AGTATCATACTTCCATTCAA+AGG | - | chr1_1:2969531-2969550 | Msa0001240:intron | 30.0% | |
| TGTTCATTACAACCTTTGAA+TGG | + | chr1_1:2969546-2969565 | None:intergenic | 30.0% | |
| AAATCATAAATGACTGCTTC+AGG | + | chr1_1:2969840-2969859 | None:intergenic | 30.0% | |
| !!! | GTTTTTTTAGGTTTGATAGC+AGG | - | chr1_1:2969976-2969995 | Msa0001240:intron | 30.0% |
| TTATGATCAAATCTTGCGTA+AGG | + | chr1_1:2970316-2970335 | None:intergenic | 30.0% | |
| CAAGATTTGATCATAACTTG+AGG | - | chr1_1:2970320-2970339 | Msa0001240:intron | 30.0% | |
| ATCATAACTTGAGGGTTTAA+GGG | - | chr1_1:2970329-2970348 | Msa0001240:intron | 30.0% | |
| ATTTCATTGGGAACTTCAAT+GGG | + | chr1_1:2970429-2970448 | None:intergenic | 30.0% | |
| AATTTCATTGGGAACTTCAA+TGG | + | chr1_1:2970430-2970449 | None:intergenic | 30.0% | |
| CATATTTCTTTCATGGCTAT+TGG | + | chr1_1:2970473-2970492 | None:intergenic | 30.0% | |
| AATCCTGTATCAGAAATTGG+AGG | - | chr1_1:2968486-2968505 | Msa0001240:intron | 35.0% | |
| ATCCTGTATCAGAAATTGGA+GGG | - | chr1_1:2968487-2968506 | Msa0001240:intron | 35.0% | |
| TTCCACCAAAGATATACATC+TGG | - | chr1_1:2968526-2968545 | Msa0001240:intron | 35.0% | |
| ! | AACGCCCTTTTGTATTTTCT+GGG | - | chr1_1:2968618-2968637 | Msa0001240:CDS | 35.0% |
| TTCGACATAGTCAAAAGAGT+TGG | - | chr1_1:2968846-2968865 | Msa0001240:intron | 35.0% | |
| GCAAAATATAAGACAGGAGA+AGG | + | chr1_1:2968878-2968897 | None:intergenic | 35.0% | |
| ATTCCCATTTAAGTAGGATC+GGG | - | chr1_1:2968951-2968970 | Msa0001240:intron | 35.0% | |
| CTTGTCTTTCTTCTTGGTTA+TGG | + | chr1_1:2969204-2969223 | None:intergenic | 35.0% | |
| AAGAGTAATCAAGGGCAATA+TGG | - | chr1_1:2969283-2969302 | Msa0001240:intron | 35.0% | |
| AGAGTAATCAAGGGCAATAT+GGG | - | chr1_1:2969284-2969303 | Msa0001240:intron | 35.0% | |
| GGATAGTAAAATGAGAGAAG+AGG | + | chr1_1:2969394-2969413 | None:intergenic | 35.0% | |
| ! | CAATGAAAGAGTACAATTGC+AGG | + | chr1_1:2969439-2969458 | None:intergenic | 35.0% |
| !! | AAAATAAGAAGGCGCTGTAA+TGG | + | chr1_1:2969509-2969528 | None:intergenic | 35.0% |
| GATTTACAACCTCTTAAGGA+AGG | + | chr1_1:2969751-2969770 | None:intergenic | 35.0% | |
| AGAAGATCTATGGCAATGTT+TGG | - | chr1_1:2969781-2969800 | Msa0001240:intron | 35.0% | |
| ! | ATTTGGAAGGGGATATTTTG+TGG | - | chr1_1:2969954-2969973 | Msa0001240:intron | 35.0% |
| AACACCCCCTAAAATACAAA+AGG | + | chr1_1:2970027-2970046 | None:intergenic | 35.0% | |
| CTCAACATTCTACTTTCACT+GGG | + | chr1_1:2970216-2970235 | None:intergenic | 35.0% | |
| GATCATAACTTGAGGGTTTA+AGG | - | chr1_1:2970328-2970347 | Msa0001240:intron | 35.0% | |
| ATCAATCAGTTGAGTGCTTT+AGG | - | chr1_1:2970548-2970567 | Msa0001240:CDS | 35.0% | |
| TCGTAATGAAACTGATCACA+GGG | - | chr1_1:2970574-2970593 | Msa0001240:CDS | 35.0% | |
| AATCCTGTATCAGAAATTGG+AGG | - | chr1_1:2968486-2968505 | Msa0001240:intron | 35.0% | |
| ATCCTGTATCAGAAATTGGA+GGG | - | chr1_1:2968487-2968506 | Msa0001240:intron | 35.0% | |
| TTCCACCAAAGATATACATC+TGG | - | chr1_1:2968526-2968545 | Msa0001240:intron | 35.0% | |
| ! | AACGCCCTTTTGTATTTTCT+GGG | - | chr1_1:2968618-2968637 | Msa0001240:CDS | 35.0% |
| TTCGACATAGTCAAAAGAGT+TGG | - | chr1_1:2968846-2968865 | Msa0001240:intron | 35.0% | |
| GCAAAATATAAGACAGGAGA+AGG | + | chr1_1:2968878-2968897 | None:intergenic | 35.0% | |
| ATTCCCATTTAAGTAGGATC+GGG | - | chr1_1:2968951-2968970 | Msa0001240:intron | 35.0% | |
| CTTGTCTTTCTTCTTGGTTA+TGG | + | chr1_1:2969204-2969223 | None:intergenic | 35.0% | |
| AAGAGTAATCAAGGGCAATA+TGG | - | chr1_1:2969283-2969302 | Msa0001240:intron | 35.0% | |
| AGAGTAATCAAGGGCAATAT+GGG | - | chr1_1:2969284-2969303 | Msa0001240:intron | 35.0% | |
| GGATAGTAAAATGAGAGAAG+AGG | + | chr1_1:2969394-2969413 | None:intergenic | 35.0% | |
| ! | CAATGAAAGAGTACAATTGC+AGG | + | chr1_1:2969439-2969458 | None:intergenic | 35.0% |
| !! | AAAATAAGAAGGCGCTGTAA+TGG | + | chr1_1:2969509-2969528 | None:intergenic | 35.0% |
| GATTTACAACCTCTTAAGGA+AGG | + | chr1_1:2969751-2969770 | None:intergenic | 35.0% | |
| AGAAGATCTATGGCAATGTT+TGG | - | chr1_1:2969781-2969800 | Msa0001240:intron | 35.0% | |
| ! | ATTTGGAAGGGGATATTTTG+TGG | - | chr1_1:2969954-2969973 | Msa0001240:intron | 35.0% |
| AACACCCCCTAAAATACAAA+AGG | + | chr1_1:2970027-2970046 | None:intergenic | 35.0% | |
| CTCAACATTCTACTTTCACT+GGG | + | chr1_1:2970216-2970235 | None:intergenic | 35.0% | |
| GATCATAACTTGAGGGTTTA+AGG | - | chr1_1:2970328-2970347 | Msa0001240:intron | 35.0% | |
| ATCAATCAGTTGAGTGCTTT+AGG | - | chr1_1:2970548-2970567 | Msa0001240:CDS | 35.0% | |
| TCGTAATGAAACTGATCACA+GGG | - | chr1_1:2970574-2970593 | Msa0001240:CDS | 35.0% | |
| !!! | GATCTTTTAGCTTCATCGCT+TGG | + | chr1_1:2968387-2968406 | None:intergenic | 40.0% |
| TAAGAAAAAGGAGCCTGAAG+TGG | - | chr1_1:2968422-2968441 | Msa0001240:intron | 40.0% | |
| ! | TGTTTTCCATCATCCACTTC+AGG | + | chr1_1:2968438-2968457 | None:intergenic | 40.0% |
| GATACAGGATTATAACCGCT+GGG | + | chr1_1:2968477-2968496 | None:intergenic | 40.0% | |
| TGATACAGGATTATAACCGC+TGG | + | chr1_1:2968478-2968497 | None:intergenic | 40.0% | |
| CACCAGATGTATATCTTTGG+TGG | + | chr1_1:2968531-2968550 | None:intergenic | 40.0% | |
| GTGCACCAGATGTATATCTT+TGG | + | chr1_1:2968534-2968553 | None:intergenic | 40.0% | |
| ! | CAACGCCCTTTTGTATTTTC+TGG | - | chr1_1:2968617-2968636 | Msa0001240:CDS | 40.0% |
| TTCCCATTTAAGTAGGATCG+GGG | - | chr1_1:2968952-2968971 | Msa0001240:intron | 40.0% | |
| !! | GGTTGTCGATTCAATGACAA+AGG | + | chr1_1:2969170-2969189 | None:intergenic | 40.0% |
| ! | TTGGTTATGGCTAGTTGGTT+AGG | + | chr1_1:2969191-2969210 | None:intergenic | 40.0% |
| TCTTCTTGGTTATGGCTAGT+TGG | + | chr1_1:2969196-2969215 | None:intergenic | 40.0% | |
| ! | ACGTAGCTTGTCTTTCTTCT+TGG | + | chr1_1:2969210-2969229 | None:intergenic | 40.0% |
| AAGAAAGACAAGCTACGTCT+CGG | - | chr1_1:2969212-2969231 | Msa0001240:intron | 40.0% | |
| AGAGAAAAGCCAGGGAAATA+AGG | - | chr1_1:2969333-2969352 | Msa0001240:intron | 40.0% | |
| AAAAGCCAGGGAAATAAGGA+GGG | - | chr1_1:2969337-2969356 | Msa0001240:intron | 40.0% | |
| ! | ATATTCCCTCCTTATTTCCC+TGG | + | chr1_1:2969345-2969364 | None:intergenic | 40.0% |
| TATTACCAAAGCTTCGCTAC+TGG | - | chr1_1:2969570-2969589 | Msa0001240:intron | 40.0% | |
| TGCATTTAGGTCTCTCGTAA+AGG | + | chr1_1:2969619-2969638 | None:intergenic | 40.0% | |
| GAACATGCCAGATTGCATTT+AGG | + | chr1_1:2969632-2969651 | None:intergenic | 40.0% | |
| TGCAGTGGAATTCAAGATCA+AGG | + | chr1_1:2969677-2969696 | None:intergenic | 40.0% | |
| ATCTTGAATTCCACTGCAAG+TGG | - | chr1_1:2969679-2969698 | Msa0001240:intron | 40.0% | |
| AGGCTTCTCGTCAACATAAT+TGG | + | chr1_1:2969731-2969750 | None:intergenic | 40.0% | |
| ATTTCCGCAGAGAAGATCTA+TGG | - | chr1_1:2969771-2969790 | Msa0001240:intron | 40.0% | |
| ATTGCCATAGATCTTCTCTG+CGG | + | chr1_1:2969778-2969797 | None:intergenic | 40.0% | |
| CCTCAACATTCTACTTTCAC+TGG | + | chr1_1:2970217-2970236 | None:intergenic | 40.0% | |
| CCAGTGAAAGTAGAATGTTG+AGG | - | chr1_1:2970214-2970233 | Msa0001240:intron | 40.0% | |
| GAGGAGCTTCTAACTATCTT+AGG | - | chr1_1:2970233-2970252 | Msa0001240:intron | 40.0% | |
| CAGTCGGAATCAAGAAAGAA+CGG | + | chr1_1:2970260-2970279 | None:intergenic | 40.0% | |
| TGATTCCGACTGTAAACCTT+TGG | - | chr1_1:2970268-2970287 | Msa0001240:intron | 40.0% | |
| CAGATCCAAAGGTTTACAGT+CGG | + | chr1_1:2970276-2970295 | None:intergenic | 40.0% | |
| !! | GTAAGGTTTTGTGTGGAACT+TGG | + | chr1_1:2970299-2970318 | None:intergenic | 40.0% |
| !! | ATCTTGCGTAAGGTTTTGTG+TGG | + | chr1_1:2970306-2970325 | None:intergenic | 40.0% |
| TTCACGTGATGAAGATCCTA+AGG | - | chr1_1:2970353-2970372 | Msa0001240:intron | 40.0% | |
| GTTTCAGAAGTTTGGTCCTT+AGG | + | chr1_1:2970372-2970391 | None:intergenic | 40.0% | |
| TAGAGCTACATGTACTCCTT+CGG | + | chr1_1:2970397-2970416 | None:intergenic | 40.0% | |
| !! | AGGAGTACATGTAGCTCTAA+AGG | - | chr1_1:2970398-2970417 | Msa0001240:intron | 40.0% |
| GTTCCCAATGAAATTCCCAA+AGG | - | chr1_1:2970435-2970454 | Msa0001240:intron | 40.0% | |
| ! | CCTCCTTTGGGAATTTCATT+GGG | + | chr1_1:2970441-2970460 | None:intergenic | 40.0% |
| ! | ACCTCCTTTGGGAATTTCAT+TGG | + | chr1_1:2970442-2970461 | None:intergenic | 40.0% |
| TGGAAACATCTACCTCCTTT+GGG | + | chr1_1:2970453-2970472 | None:intergenic | 40.0% | |
| TTGGAAACATCTACCTCCTT+TGG | + | chr1_1:2970454-2970473 | None:intergenic | 40.0% | |
| AACAATCTTAAGCCACCAGT+AGG | - | chr1_1:2970512-2970531 | Msa0001240:CDS | 40.0% | |
| ACAATCTTAAGCCACCAGTA+GGG | - | chr1_1:2970513-2970532 | Msa0001240:CDS | 40.0% | |
| ATTATCAGTATCAGCCCTAC+TGG | + | chr1_1:2970530-2970549 | None:intergenic | 40.0% | |
| ! | AATCAGTTGAGTGCTTTAGG+TGG | - | chr1_1:2970551-2970570 | Msa0001240:CDS | 40.0% |
| GTCGTAATGAAACTGATCAC+AGG | - | chr1_1:2970573-2970592 | Msa0001240:CDS | 40.0% | |
| !!! | GATCTTTTAGCTTCATCGCT+TGG | + | chr1_1:2968387-2968406 | None:intergenic | 40.0% |
| TAAGAAAAAGGAGCCTGAAG+TGG | - | chr1_1:2968422-2968441 | Msa0001240:intron | 40.0% | |
| ! | TGTTTTCCATCATCCACTTC+AGG | + | chr1_1:2968438-2968457 | None:intergenic | 40.0% |
| GATACAGGATTATAACCGCT+GGG | + | chr1_1:2968477-2968496 | None:intergenic | 40.0% | |
| TGATACAGGATTATAACCGC+TGG | + | chr1_1:2968478-2968497 | None:intergenic | 40.0% | |
| CACCAGATGTATATCTTTGG+TGG | + | chr1_1:2968531-2968550 | None:intergenic | 40.0% | |
| GTGCACCAGATGTATATCTT+TGG | + | chr1_1:2968534-2968553 | None:intergenic | 40.0% | |
| ! | CAACGCCCTTTTGTATTTTC+TGG | - | chr1_1:2968617-2968636 | Msa0001240:CDS | 40.0% |
| TTCCCATTTAAGTAGGATCG+GGG | - | chr1_1:2968952-2968971 | Msa0001240:intron | 40.0% | |
| !! | GGTTGTCGATTCAATGACAA+AGG | + | chr1_1:2969170-2969189 | None:intergenic | 40.0% |
| ! | TTGGTTATGGCTAGTTGGTT+AGG | + | chr1_1:2969191-2969210 | None:intergenic | 40.0% |
| TCTTCTTGGTTATGGCTAGT+TGG | + | chr1_1:2969196-2969215 | None:intergenic | 40.0% | |
| ! | ACGTAGCTTGTCTTTCTTCT+TGG | + | chr1_1:2969210-2969229 | None:intergenic | 40.0% |
| AAGAAAGACAAGCTACGTCT+CGG | - | chr1_1:2969212-2969231 | Msa0001240:intron | 40.0% | |
| AGAGAAAAGCCAGGGAAATA+AGG | - | chr1_1:2969333-2969352 | Msa0001240:intron | 40.0% | |
| AAAAGCCAGGGAAATAAGGA+GGG | - | chr1_1:2969337-2969356 | Msa0001240:intron | 40.0% | |
| ! | ATATTCCCTCCTTATTTCCC+TGG | + | chr1_1:2969345-2969364 | None:intergenic | 40.0% |
| TATTACCAAAGCTTCGCTAC+TGG | - | chr1_1:2969570-2969589 | Msa0001240:intron | 40.0% | |
| TGCATTTAGGTCTCTCGTAA+AGG | + | chr1_1:2969619-2969638 | None:intergenic | 40.0% | |
| GAACATGCCAGATTGCATTT+AGG | + | chr1_1:2969632-2969651 | None:intergenic | 40.0% | |
| TGCAGTGGAATTCAAGATCA+AGG | + | chr1_1:2969677-2969696 | None:intergenic | 40.0% | |
| ATCTTGAATTCCACTGCAAG+TGG | - | chr1_1:2969679-2969698 | Msa0001240:intron | 40.0% | |
| AGGCTTCTCGTCAACATAAT+TGG | + | chr1_1:2969731-2969750 | None:intergenic | 40.0% | |
| ATTTCCGCAGAGAAGATCTA+TGG | - | chr1_1:2969771-2969790 | Msa0001240:intron | 40.0% | |
| ATTGCCATAGATCTTCTCTG+CGG | + | chr1_1:2969778-2969797 | None:intergenic | 40.0% | |
| CCTCAACATTCTACTTTCAC+TGG | + | chr1_1:2970217-2970236 | None:intergenic | 40.0% | |
| CCAGTGAAAGTAGAATGTTG+AGG | - | chr1_1:2970214-2970233 | Msa0001240:intron | 40.0% | |
| GAGGAGCTTCTAACTATCTT+AGG | - | chr1_1:2970233-2970252 | Msa0001240:intron | 40.0% | |
| CAGTCGGAATCAAGAAAGAA+CGG | + | chr1_1:2970260-2970279 | None:intergenic | 40.0% | |
| TGATTCCGACTGTAAACCTT+TGG | - | chr1_1:2970268-2970287 | Msa0001240:intron | 40.0% | |
| CAGATCCAAAGGTTTACAGT+CGG | + | chr1_1:2970276-2970295 | None:intergenic | 40.0% | |
| !! | GTAAGGTTTTGTGTGGAACT+TGG | + | chr1_1:2970299-2970318 | None:intergenic | 40.0% |
| !! | ATCTTGCGTAAGGTTTTGTG+TGG | + | chr1_1:2970306-2970325 | None:intergenic | 40.0% |
| TTCACGTGATGAAGATCCTA+AGG | - | chr1_1:2970353-2970372 | Msa0001240:intron | 40.0% | |
| GTTTCAGAAGTTTGGTCCTT+AGG | + | chr1_1:2970372-2970391 | None:intergenic | 40.0% | |
| TAGAGCTACATGTACTCCTT+CGG | + | chr1_1:2970397-2970416 | None:intergenic | 40.0% | |
| !! | AGGAGTACATGTAGCTCTAA+AGG | - | chr1_1:2970398-2970417 | Msa0001240:intron | 40.0% |
| GTTCCCAATGAAATTCCCAA+AGG | - | chr1_1:2970435-2970454 | Msa0001240:intron | 40.0% | |
| ! | CCTCCTTTGGGAATTTCATT+GGG | + | chr1_1:2970441-2970460 | None:intergenic | 40.0% |
| ! | ACCTCCTTTGGGAATTTCAT+TGG | + | chr1_1:2970442-2970461 | None:intergenic | 40.0% |
| TGGAAACATCTACCTCCTTT+GGG | + | chr1_1:2970453-2970472 | None:intergenic | 40.0% | |
| TTGGAAACATCTACCTCCTT+TGG | + | chr1_1:2970454-2970473 | None:intergenic | 40.0% | |
| AACAATCTTAAGCCACCAGT+AGG | - | chr1_1:2970512-2970531 | Msa0001240:CDS | 40.0% | |
| ACAATCTTAAGCCACCAGTA+GGG | - | chr1_1:2970513-2970532 | Msa0001240:CDS | 40.0% | |
| ATTATCAGTATCAGCCCTAC+TGG | + | chr1_1:2970530-2970549 | None:intergenic | 40.0% | |
| ! | AATCAGTTGAGTGCTTTAGG+TGG | - | chr1_1:2970551-2970570 | Msa0001240:CDS | 40.0% |
| GTCGTAATGAAACTGATCAC+AGG | - | chr1_1:2970573-2970592 | Msa0001240:CDS | 40.0% | |
| CTGAAATCTGTTGAACCCAG+CGG | - | chr1_1:2968459-2968478 | Msa0001240:intron | 45.0% | |
| AGCCCTCCAATTTCTGATAC+AGG | + | chr1_1:2968492-2968511 | None:intergenic | 45.0% | |
| GACCCCGATCCTACTTAAAT+GGG | + | chr1_1:2968957-2968976 | None:intergenic | 45.0% | |
| AGACCCCGATCCTACTTAAA+TGG | + | chr1_1:2968958-2968977 | None:intergenic | 45.0% | |
| GAAAAGCCAGGGAAATAAGG+AGG | - | chr1_1:2969336-2969355 | Msa0001240:intron | 45.0% | |
| CGAGAGACCTAAATGCAATC+TGG | - | chr1_1:2969622-2969641 | Msa0001240:intron | 45.0% | |
| ! | TGAAACAATGCCACTTGCAG+TGG | + | chr1_1:2969692-2969711 | None:intergenic | 45.0% |
| GGAATTCCATGTAGAGTTGG+CGG | + | chr1_1:2970195-2970214 | None:intergenic | 45.0% | |
| CTGGGAATTCCATGTAGAGT+TGG | + | chr1_1:2970198-2970217 | None:intergenic | 45.0% | |
| CTTCGGGAGTTTCAGAAGTT+TGG | + | chr1_1:2970380-2970399 | None:intergenic | 45.0% | |
| !! | CAAACTTCTGAAACTCCCGA+AGG | - | chr1_1:2970378-2970397 | Msa0001240:intron | 45.0% |
| AGAGCTACATGTACTCCTTC+GGG | + | chr1_1:2970396-2970415 | None:intergenic | 45.0% | |
| CCCAATGAAATTCCCAAAGG+AGG | - | chr1_1:2970438-2970457 | Msa0001240:intron | 45.0% | |
| CTGAAATCTGTTGAACCCAG+CGG | - | chr1_1:2968459-2968478 | Msa0001240:intron | 45.0% | |
| AGCCCTCCAATTTCTGATAC+AGG | + | chr1_1:2968492-2968511 | None:intergenic | 45.0% | |
| GACCCCGATCCTACTTAAAT+GGG | + | chr1_1:2968957-2968976 | None:intergenic | 45.0% | |
| AGACCCCGATCCTACTTAAA+TGG | + | chr1_1:2968958-2968977 | None:intergenic | 45.0% | |
| GAAAAGCCAGGGAAATAAGG+AGG | - | chr1_1:2969336-2969355 | Msa0001240:intron | 45.0% | |
| CGAGAGACCTAAATGCAATC+TGG | - | chr1_1:2969622-2969641 | Msa0001240:intron | 45.0% | |
| ! | TGAAACAATGCCACTTGCAG+TGG | + | chr1_1:2969692-2969711 | None:intergenic | 45.0% |
| GGAATTCCATGTAGAGTTGG+CGG | + | chr1_1:2970195-2970214 | None:intergenic | 45.0% | |
| CTGGGAATTCCATGTAGAGT+TGG | + | chr1_1:2970198-2970217 | None:intergenic | 45.0% | |
| CTTCGGGAGTTTCAGAAGTT+TGG | + | chr1_1:2970380-2970399 | None:intergenic | 45.0% | |
| !! | CAAACTTCTGAAACTCCCGA+AGG | - | chr1_1:2970378-2970397 | Msa0001240:intron | 45.0% |
| AGAGCTACATGTACTCCTTC+GGG | + | chr1_1:2970396-2970415 | None:intergenic | 45.0% | |
| CCCAATGAAATTCCCAAAGG+AGG | - | chr1_1:2970438-2970457 | Msa0001240:intron | 45.0% | |
| !!! | TTTTATTTTAATTCAAATTT+TGG | + | chr1_1:2968556-2968575 | None:intergenic | 5.0% |
| !!! | TTTTATTTTAATTCAAATTT+TGG | + | chr1_1:2968556-2968575 | None:intergenic | 5.0% |
| AAGGAGCCTGAAGTGGATGA+TGG | - | chr1_1:2968429-2968448 | Msa0001240:intron | 50.0% | |
| CCAAAGCTTCGCTACTGGAT+CGG | - | chr1_1:2969575-2969594 | Msa0001240:intron | 50.0% | |
| GACGAGAAGCCTTCCTTAAG+AGG | - | chr1_1:2969739-2969758 | Msa0001240:intron | 50.0% | |
| GTGGAACTTGGCAGATCCAA+AGG | + | chr1_1:2970287-2970306 | None:intergenic | 50.0% | |
| ATCAGTATCAGCCCTACTGG+TGG | + | chr1_1:2970527-2970546 | None:intergenic | 50.0% | |
| AAGGAGCCTGAAGTGGATGA+TGG | - | chr1_1:2968429-2968448 | Msa0001240:intron | 50.0% | |
| CCAAAGCTTCGCTACTGGAT+CGG | - | chr1_1:2969575-2969594 | Msa0001240:intron | 50.0% | |
| GACGAGAAGCCTTCCTTAAG+AGG | - | chr1_1:2969739-2969758 | Msa0001240:intron | 50.0% | |
| GTGGAACTTGGCAGATCCAA+AGG | + | chr1_1:2970287-2970306 | None:intergenic | 50.0% | |
| ATCAGTATCAGCCCTACTGG+TGG | + | chr1_1:2970527-2970546 | None:intergenic | 50.0% | |
| CCGATCCAGTAGCGAAGCTT+TGG | + | chr1_1:2969578-2969597 | None:intergenic | 55.0% | |
| TGCAGACCGCCAACTCTACA+TGG | - | chr1_1:2970186-2970205 | Msa0001240:intron | 55.0% | |
| CCGATCCAGTAGCGAAGCTT+TGG | + | chr1_1:2969578-2969597 | None:intergenic | 55.0% | |
| TGCAGACCGCCAACTCTACA+TGG | - | chr1_1:2970186-2970205 | Msa0001240:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 2968372 | 2970631 | 2968372 | ID=Msa0001240;Name=Msa0001240 |
| chr1_1 | mRNA | 2968372 | 2970631 | 2968372 | ID=Msa0001240-mRNA-1;Parent=Msa0001240;Name=Msa0001240-mRNA-1;_AED=0.47;_eAED=0.52;_QI=0|0|0|1|1|1|3|0|115 |
| chr1_1 | exon | 2970456 | 2970631 | 2970456 | ID=Msa0001240-mRNA-1:exon:660;Parent=Msa0001240-mRNA-1 |
| chr1_1 | exon | 2968544 | 2968653 | 2968544 | ID=Msa0001240-mRNA-1:exon:659;Parent=Msa0001240-mRNA-1 |
| chr1_1 | exon | 2968372 | 2968433 | 2968372 | ID=Msa0001240-mRNA-1:exon:658;Parent=Msa0001240-mRNA-1 |
| chr1_1 | CDS | 2970456 | 2970631 | 2970456 | ID=Msa0001240-mRNA-1:cds;Parent=Msa0001240-mRNA-1 |
| chr1_1 | CDS | 2968544 | 2968653 | 2968544 | ID=Msa0001240-mRNA-1:cds;Parent=Msa0001240-mRNA-1 |
| chr1_1 | CDS | 2968372 | 2968433 | 2968372 | ID=Msa0001240-mRNA-1:cds;Parent=Msa0001240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
