AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1406540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406540 MtrunA17_Chr4g0073561 95.783 498 16 2 1 495 1 496 0.0 979
Msa1406540 MtrunA17_Chr4g0001981 47.746 488 184 11 51 495 60 519 8.42e-128 382
Msa1406540 MtrunA17_Chr1g0192751 41.475 217 108 6 56 264 42 247 4.35e-42 154
Msa1406540 MtrunA17_Chr4g0073591 81.690 71 13 0 120 190 14 84 1.52e-36 131
Msa1406540 MtrunA17_Chr6g0453721 37.584 149 79 4 110 253 50 189 9.49e-24 99.0
Msa1406540 MtrunA17_Chr4g0073601 66.038 53 18 0 443 495 6 58 2.07e-17 76.3
Msa1406540 MtrunA17_Chr6g0453841 33.537 164 80 5 110 253 50 204 2.18e-17 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406540 AT2G24100.1 46.471 510 213 11 1 495 1 465 1.37e-128 382
Msa1406540 AT4G30780.1 50.248 404 139 13 1 357 1 389 1.45e-108 335
Msa1406540 AT4G30780.1 40.936 171 85 2 330 495 423 582 2.86e-20 94.4
Msa1406540 AT3G05770.2 41.096 219 113 6 48 254 17 231 4.35e-34 132
Msa1406540 AT3G05770.1 41.096 219 113 6 48 254 17 231 4.74e-34 133
Msa1406540 AT1G54300.1 43.312 157 78 4 109 254 2 158 5.11e-29 117

Find 134 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATCCTCGATCTCAAATT+TGG 0.170910 tig0023210:+77996 None:intergenic
GATATGTCAAACAAGAATTT+TGG 0.184107 tig0023210:+73483 None:intergenic
TCATGTGAATTGGGCACTGC+TGG 0.262746 tig0023210:+73672 None:intergenic
ATCCCCTGAAGCCATTTCTT+TGG 0.263985 tig0023210:+73848 None:intergenic
TGCCACAATGTGTGCTTTCT+AGG 0.293917 tig0023210:+77007 None:intergenic
TCAGAAGATTAGTCCCGATT+TGG 0.304438 tig0023210:-73462 Msa1406540:exon
GAGGACTCGAGAGATGTTTA+TGG 0.319905 tig0023210:-73585 Msa1406540:CDS
TTGCCAAACAGAAGCTTGTT+TGG 0.321183 tig0023210:-77267 Msa1406540:CDS
CTTAATGAGCCTAGCCCTTT+GGG 0.327280 tig0023210:-77614 Msa1406540:CDS
TAATGCCATCCATCATTTCT+TGG 0.333114 tig0023210:+73796 None:intergenic
GGATCCTCGATCTCAAATTT+GGG 0.347298 tig0023210:+77997 None:intergenic
ACTATCAACGAGACTCAAAA+TGG 0.348746 tig0023210:+73286 None:intergenic
GACACTTTGTCAAGAGAATT+CGG 0.351718 tig0023210:-77546 Msa1406540:CDS
TCATAGGAGGCACTAGCATT+TGG 0.352538 tig0023210:-73389 Msa1406540:three_prime_UTR
GCCCTTTGGGTTTAAGTCTC+AGG 0.361134 tig0023210:-77601 Msa1406540:CDS
GCCCGTGTTGTCATGTGAAT+TGG 0.371557 tig0023210:+73662 None:intergenic
ACTTAATGAGCCTAGCCCTT+TGG 0.380538 tig0023210:-77615 Msa1406540:CDS
AGTTCTTATATTACCTGAAC+TGG 0.384241 tig0023210:+74603 None:intergenic
TTCCCAAACAAGCTTCTGTT+TGG 0.391805 tig0023210:+77264 None:intergenic
TGTTTACCTTGTTAAACATC+CGG 0.392507 tig0023210:-73242 Msa1406540:three_prime_UTR
AAGCCAACAGCCAGAGATAA+TGG 0.395009 tig0023210:-74842 Msa1406540:CDS
CAGAAGATTAGTCCCGATTT+GGG 0.396073 tig0023210:-73461 Msa1406540:exon
CTCCAATCTTTCAGCAGAAA+AGG 0.396852 tig0023210:+73821 None:intergenic
GCATCACATTTCCAAAGAAA+TGG 0.397833 tig0023210:-73859 Msa1406540:CDS
AGAAAGAGGGCGAAGGAGAA+GGG 0.407538 tig0023210:+78169 None:intergenic
ATTTCCAAAGAAATGGCTTC+AGG 0.408201 tig0023210:-73852 Msa1406540:CDS
ATACTCGTATTGCTTTGTTA+AGG 0.412443 tig0023210:-73205 Msa1406540:three_prime_UTR
AGACGATTCCCATTGAGAAC+GGG 0.414818 tig0023210:+78041 None:intergenic
TTCGCAGGGCACACTATCTA+AGG 0.416227 tig0023210:+74636 None:intergenic
TGCCAAACAGAAGCTTGTTT+GGG 0.418118 tig0023210:-77266 Msa1406540:CDS
TTCCTCGACATGCCTGGTGC+CGG 0.420662 tig0023210:+73555 None:intergenic
ACATTCTGAAATTCCCAAAT+CGG 0.428571 tig0023210:+73448 None:intergenic
AAATCGCTCATTGACATAGA+AGG 0.430459 tig0023210:+73897 None:intergenic
TGATCCCTTTGAATCAGCTT+CGG 0.431254 tig0023210:+73956 None:intergenic
AAGAAAGAGGGCGAAGGAGA+AGG 0.437217 tig0023210:+78168 None:intergenic
AAAGATTGTGATTTGCATCA+AGG 0.438860 tig0023210:-74763 Msa1406540:CDS
CATGTGAATTGGGCACTGCT+GGG 0.440357 tig0023210:+73673 None:intergenic
GAAGCACCTTCCTCCAGTTC+AGG 0.441844 tig0023210:-74616 Msa1406540:intron
ACTGGAGGAAGGTGCTTCGC+AGG 0.443629 tig0023210:+74621 None:intergenic
CTAAGAATCCCCGTTCTCAA+TGG 0.462290 tig0023210:-78050 Msa1406540:CDS
CGGTCGTAAATGATGGAGAC+AGG 0.464032 tig0023210:+74683 None:intergenic
GAAATATGAAGGTGACTTAG+TGG 0.465278 tig0023210:-77302 Msa1406540:CDS
CTTGTTTGGGAAGTTCTTGA+GGG 0.466937 tig0023210:-77253 Msa1406540:CDS
TGGGATCAAATAAAACTGCC+TGG 0.467087 tig0023210:-73927 Msa1406540:CDS
GACAACACGGGCTCTATTGA+AGG 0.467111 tig0023210:-73651 Msa1406540:CDS
AGAGAATTAAATTACCACTA+AGG 0.468718 tig0023210:+77144 None:intergenic
GGCTTTAAGTTGACTGATGT+CGG 0.472338 tig0023210:+77198 None:intergenic
TTGTTAAACATCCGGGTATG+TGG 0.473649 tig0023210:-73234 Msa1406540:three_prime_UTR
AGGTCCATCATCAGGACAAT+TGG 0.475804 tig0023210:+77177 None:intergenic
AAAAGTCAACATAGATATCA+AGG 0.479802 tig0023210:-73616 Msa1406540:CDS
CTGTGCTCGGTCGTAAATGA+TGG 0.481540 tig0023210:+74676 None:intergenic
TCTACGCTGTCTCTTACAAA+TGG 0.481679 tig0023210:-73700 Msa1406540:CDS
AGGAGCATGTTGATCTTGAA+TGG 0.481866 tig0023210:+77975 None:intergenic
CCCGTGTTGTCATGTGAATT+GGG 0.482809 tig0023210:+73663 None:intergenic
TAAGAATCCCCGTTCTCAAT+GGG 0.488381 tig0023210:-78049 Msa1406540:CDS
ATGTGAATTGGGCACTGCTG+GGG 0.492111 tig0023210:+73674 None:intergenic
TCGTATTGCTTTGTTAAGGA+TGG 0.493485 tig0023210:-73201 Msa1406540:three_prime_UTR
ATGCAAAACCCTAACGGAAA+AGG 0.495498 tig0023210:+78135 None:intergenic
ACCTAGCACATTGACCTTAG+TGG 0.495667 tig0023210:-77158 Msa1406540:intron
AGACTTAAACCCAAAGGGCT+AGG 0.496309 tig0023210:+77605 None:intergenic
ACATCTGCTTAACGACAATC+AGG 0.501367 tig0023210:-73769 Msa1406540:CDS
AGATGTTTATGGTGGCAATC+CGG 0.504171 tig0023210:-73574 Msa1406540:CDS
GGTAAACATAGTTTACTTGA+AGG 0.505009 tig0023210:+73257 None:intergenic
TTTCCAAAGAAATGGCTTCA+GGG 0.505175 tig0023210:-73851 Msa1406540:CDS
AGTGAATCAACCATTATCTC+TGG 0.506506 tig0023210:+74832 None:intergenic
TTTATTGGTAATGTTAAGGA+TGG 0.508236 tig0023210:-73159 Msa1406540:three_prime_UTR
AAAGCCAATTGTCCTGATGA+TGG 0.508417 tig0023210:-77181 Msa1406540:CDS
GAGTCTTTCCTCGACATGCC+TGG 0.511707 tig0023210:+73549 None:intergenic
CATTCTGAAATTCCCAAATC+GGG 0.512987 tig0023210:+73449 None:intergenic
GCTTGTTTGGGAAGTTCTTG+AGG 0.513290 tig0023210:-77254 Msa1406540:CDS
GACATAGAAGGACGGAGCCC+AGG 0.513305 tig0023210:+73909 None:intergenic
TGTGAATTGGGCACTGCTGG+GGG 0.513353 tig0023210:+73675 None:intergenic
ATGTCGAGGAAAGACTCATT+TGG 0.515569 tig0023210:-73543 Msa1406540:CDS
ATTGGAGTACCAAGAAATGA+TGG 0.518306 tig0023210:-73805 Msa1406540:CDS
AAAGTAAAATAGAAATTCAA+TGG 0.524135 tig0023210:-77222 Msa1406540:CDS
TCCTGAGACTTAAACCCAAA+GGG 0.525740 tig0023210:+77600 None:intergenic
TTGCATCAAGGCAAGGGCAA+TGG 0.532360 tig0023210:-74751 Msa1406540:CDS
AATGTGTGCTTTCTAGGTTG+AGG 0.532693 tig0023210:+77013 None:intergenic
CAGTATAAATCGAAATATGA+AGG 0.533390 tig0023210:-77313 Msa1406540:CDS
AAGAATATACCTATGTGTGC+TGG 0.533619 tig0023210:+76955 None:intergenic
TTTGGAAGAGATGCAATTCG+AGG 0.535660 tig0023210:+73501 None:intergenic
GTTTACCTTGTTAAACATCC+GGG 0.535898 tig0023210:-73241 Msa1406540:three_prime_UTR
ACTTAAGACGGTCGTTACAC+TGG 0.536403 tig0023210:+74869 None:intergenic
TTGTGATTTGCATCAAGGCA+AGG 0.538238 tig0023210:-74758 Msa1406540:CDS
GGAGCATGTTGATCTTGAAT+GGG 0.540041 tig0023210:+77976 None:intergenic
ATTCAAAGGGATCAAGACAC+TGG 0.540745 tig0023210:-73947 Msa1406540:CDS
TGCTTCAGTTGAAAAGCTGA+AGG 0.545025 tig0023210:-77468 Msa1406540:CDS
GATGGAGACAGGGATGAATG+AGG 0.546725 tig0023210:+74694 None:intergenic
TAATTCCGAAGCTGATTCAA+AGG 0.548618 tig0023210:-73961 Msa1406540:CDS
TATGGTGGCAATCCGGCACC+AGG 0.548784 tig0023210:-73567 Msa1406540:CDS
CAACCATTATCTCTGGCTGT+TGG 0.549994 tig0023210:+74839 None:intergenic
TTCCAAAGAAATGGCTTCAG+GGG 0.550738 tig0023210:-73850 Msa1406540:CDS
TGTGATTTGCATCAAGGCAA+GGG 0.551177 tig0023210:-74757 Msa1406540:CDS
ATGTGTGCTGGCCTGTCCAC+CGG 0.553837 tig0023210:+76967 None:intergenic
AATGTGCTAGGTCCATCATC+AGG 0.555133 tig0023210:+77169 None:intergenic
TGTATCAAATCTAACAGCGA+AGG 0.555578 tig0023210:+77572 None:intergenic
AGCAGAAGGATCACTGTGCT+CGG 0.561280 tig0023210:+74663 None:intergenic
CCATCAAAATTTAGAGTCAA+CGG 0.566227 tig0023210:+78088 None:intergenic
GGGATCAAATAAAACTGCCT+GGG 0.569804 tig0023210:-73926 Msa1406540:CDS
AAGACGATTCCCATTGAGAA+CGG 0.569958 tig0023210:+78040 None:intergenic
AATTCCGAAGCTGATTCAAA+GGG 0.570296 tig0023210:-73960 Msa1406540:CDS
CTGGAGGAAGGTGCTTCGCA+GGG 0.580583 tig0023210:+74622 None:intergenic
AAAGAGAAGAAAGAGGGCGA+AGG 0.582063 tig0023210:+78162 None:intergenic
TCTTATATTACCTGAACTGG+AGG 0.586999 tig0023210:+74606 None:intergenic
TTCTCAATAGCAGCGGATCG+TGG 0.587619 tig0023210:+74799 None:intergenic
ATATTACCTGAACTGGAGGA+AGG 0.594740 tig0023210:+74610 None:intergenic
AATCTTTCAGCAGAAAAGGA+AGG 0.598358 tig0023210:+73825 None:intergenic
ACCACTAAGGTCAATGTGCT+AGG 0.600691 tig0023210:+77157 None:intergenic
GCCCAATTCACATGACAACA+CGG 0.601317 tig0023210:-73664 Msa1406540:CDS
GACGATTCCCATTGAGAACG+GGG 0.602790 tig0023210:+78042 None:intergenic
GATCCTCGATCTCAAATTTG+GGG 0.605147 tig0023210:+77998 None:intergenic
ACTTTGTGACGCTTGTTGAG+AGG 0.605272 tig0023210:+77955 None:intergenic
TTCCTGAGACTTAAACCCAA+AGG 0.606349 tig0023210:+77599 None:intergenic
AGATATCAAGGCTACTGAAG+AGG 0.606877 tig0023210:-73604 Msa1406540:CDS
AACAGAATGCAAAACCCTAA+CGG 0.610835 tig0023210:+78129 None:intergenic
CTATCTAAGGTAATAGCAGA+AGG 0.611346 tig0023210:+74649 None:intergenic
GTATCAAATCTAACAGCGAA+GGG 0.619004 tig0023210:+77573 None:intergenic
CGCTCATTGACATAGAAGGA+CGG 0.621047 tig0023210:+73901 None:intergenic
GAGTACCAAGAAATGATGGA+TGG 0.630044 tig0023210:-73801 Msa1406540:CDS
TTCAAAGGGATCAAGACACT+GGG 0.632188 tig0023210:-73946 Msa1406540:CDS
TCCCATGTTCTGAAAACGAG+AGG 0.639975 tig0023210:+74720 None:intergenic
TTTAAACTCTAAAGCAAACA+AGG 0.644174 tig0023210:-77498 Msa1406540:CDS
GTCAACGGAGAAGAAATCGA+AGG 0.648412 tig0023210:+78103 None:intergenic
GGTCGTAAATGATGGAGACA+GGG 0.654834 tig0023210:+74684 None:intergenic
GTGGACAGGCCAGCACACAT+AGG 0.655241 tig0023210:-76964 Msa1406540:intron
GACTCGAGAGATGTTTATGG+TGG 0.656722 tig0023210:-73582 Msa1406540:CDS
CCCAATTCACATGACAACAC+GGG 0.664172 tig0023210:-73663 Msa1406540:CDS
ATCCTCGATCTCAAATTTGG+GGG 0.664332 tig0023210:+77999 None:intergenic
GTTGGCTTAAGAACTTAAGA+CGG 0.666748 tig0023210:+74857 None:intergenic
GTGAGGGTTCTCAATAGCAG+CGG 0.669144 tig0023210:+74792 None:intergenic
ACATACCCGGATGTTTAACA+AGG 0.690588 tig0023210:+73236 None:intergenic
AACCTAGAAAGCACACATTG+TGG 0.694172 tig0023210:-77009 Msa1406540:CDS
AGTATCGAAATCCACATACC+CGG 0.706310 tig0023210:+73223 None:intergenic
TGGAAATGTGATGCTCAATG+TGG 0.744777 tig0023210:+73868 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATGTTTACTTTTATTT+TGG - tig0023210:73645-73664 Msa1406540:CDS 10.0%
!!! ATAATGTTTACTTTTATTTT+GGG - tig0023210:73646-73665 Msa1406540:CDS 10.0%
!! TTCTATTAAGATTTATTTAT+TGG - tig0023210:74706-74725 Msa1406540:CDS 10.0%
!! TCTATTAAGATTTATTTATT+GGG - tig0023210:74707-74726 Msa1406540:CDS 10.0%
!! TTTCATTTAAATGTAAAAAA+AGG - tig0023210:75195-75214 Msa1406540:intron 10.0%
!! AAATTATCATTAGAAAAAAT+TGG - tig0023210:75690-75709 Msa1406540:intron 10.0%
!! AATTATCATTAGAAAAAATT+GGG - tig0023210:75691-75710 Msa1406540:intron 10.0%
!!! CTTTTTATTTATAGTTTAAT+AGG - tig0023210:76159-76178 Msa1406540:intron 10.0%
!!! GTTTTTTAACTTTTTTTTAT+TGG - tig0023210:78166-78185 Msa1406540:intron 10.0%
!! AAAGTAAAATAGAAATTCAA+TGG - tig0023210:74118-74137 Msa1406540:intron 15.0%
!! TAAATCTATATGATTATGAA+TGG + tig0023210:74455-74474 None:intergenic 15.0%
!!! TAAAAGTACATTAATTTTGT+TGG - tig0023210:74473-74492 Msa1406540:intron 15.0%
!!! AATCTCTAATATTTTACATA+GGG + tig0023210:74535-74554 None:intergenic 15.0%
!! ACCTTAAAAAAAATTACAAA+AGG - tig0023210:74801-74820 Msa1406540:CDS 15.0%
!!! ACCTTTTGTAATTTTTTTTA+AGG + tig0023210:74805-74824 None:intergenic 15.0%
!! TGAATTAAAATTAATGTTCA+GGG + tig0023210:75082-75101 None:intergenic 15.0%
!! TAAAATAACAGAAATTAGTT+GGG + tig0023210:75168-75187 None:intergenic 15.0%
!! TTAAAATAACAGAAATTAGT+TGG + tig0023210:75169-75188 None:intergenic 15.0%
!!! ATTCAATTTTTACTAAACTT+AGG - tig0023210:75397-75416 Msa1406540:intron 15.0%
!!! TTCAATTTTTACTAAACTTA+GGG - tig0023210:75398-75417 Msa1406540:intron 15.0%
!!! AATTGATAATACTTTTAATG+CGG - tig0023210:75824-75843 Msa1406540:intron 15.0%
!!! TATTTTACTGATATTTTACT+TGG + tig0023210:77037-77056 None:intergenic 15.0%
!!! TTAATTTTTTTCTTCTTCAT+AGG - tig0023210:77935-77954 Msa1406540:intron 15.0%
!!! ATTATTTTAATGAAGAATCT+TGG - tig0023210:77976-77995 Msa1406540:CDS 15.0%
!!! TTTTTTTATTGGTAATGTTA+AGG - tig0023210:78177-78196 Msa1406540:five_prime_UTR 15.0%
!!! TTCCTTTTTCTCATTAATTA+TGG - tig0023210:73671-73690 Msa1406540:CDS 20.0%
!! AACCATAATTAATGAGAAAA+AGG + tig0023210:73676-73695 None:intergenic 20.0%
!!! ACATTTAAAAATTGGTTCAT+GGG - tig0023210:73914-73933 Msa1406540:CDS 20.0%
!!! ATCTCTAATATTTTACATAG+GGG + tig0023210:74534-74553 None:intergenic 20.0%
!!! CAATCTCTAATATTTTACAT+AGG + tig0023210:74536-74555 None:intergenic 20.0%
!!! ATTAGAGATTGATTTTCAAA+TGG - tig0023210:74545-74564 Msa1406540:intron 20.0%
!!! TTAGAGATTGATTTTCAAAT+GGG - tig0023210:74546-74565 Msa1406540:intron 20.0%
!!! ACTTATTTCTTCTTCTTTTT+CGG - tig0023210:75041-75060 Msa1406540:intron 20.0%
!! GTGAATTAAAATTAATGTTC+AGG + tig0023210:75083-75102 None:intergenic 20.0%
!! AAACTTGACCAAATAAATAA+GGG + tig0023210:75496-75515 None:intergenic 20.0%
!! TAAACTTGACCAAATAAATA+AGG + tig0023210:75497-75516 None:intergenic 20.0%
!!! ATTTTTTACTTTGCATTGTT+TGG - tig0023210:75519-75538 Msa1406540:intron 20.0%
!! TTTATAGTTTAATAGGGTTA+TGG - tig0023210:76166-76185 Msa1406540:intron 20.0%
!!! TCATATTTTCAATAATGCTA+TGG - tig0023210:76202-76221 Msa1406540:intron 20.0%
!!! ATTTTGATTGTGTTACATAA+GGG - tig0023210:76768-76787 Msa1406540:intron 20.0%
!! AATGATTGAAAACTTATCAA+TGG - tig0023210:76874-76893 Msa1406540:intron 20.0%
!!! TCTTCTAAAATTTGTCAAAT+GGG - tig0023210:77103-77122 Msa1406540:intron 20.0%
!! CCAAAACACATTAATAAATA+AGG + tig0023210:77314-77333 None:intergenic 20.0%
!!! CCTTATTTATTAATGTGTTT+TGG - tig0023210:77311-77330 Msa1406540:CDS 20.0%
!!! TTTAAACTCTAAAGCAAACA+AGG - tig0023210:73842-73861 Msa1406540:CDS 25.0%
!! CAATTTTTAAATGTGTAGCT+GGG + tig0023210:73908-73927 None:intergenic 25.0%
!! CACATTTAAAAATTGGTTCA+TGG - tig0023210:73913-73932 Msa1406540:CDS 25.0%
! CAGTATAAATCGAAATATGA+AGG - tig0023210:74027-74046 Msa1406540:intron 25.0%
! AGAGAATTAAATTACCACTA+AGG + tig0023210:74199-74218 None:intergenic 25.0%
! TTCATAAATCATTGAACACA+GGG + tig0023210:74253-74272 None:intergenic 25.0%
! ATTCATAAATCATTGAACAC+AGG + tig0023210:74254-74273 None:intergenic 25.0%
!!! TAATTTGCTTATAGTATCTG+TGG - tig0023210:74640-74659 Msa1406540:CDS 25.0%
! TTATAGTATCTGTGGAATTT+AGG - tig0023210:74648-74667 Msa1406540:CDS 25.0%
!!! TATTTTTAGGGTCCATATTA+GGG + tig0023210:74736-74755 None:intergenic 25.0%
!!! TTATTTTTAGGGTCCATATT+AGG + tig0023210:74737-74756 None:intergenic 25.0%
! AATATGGACCCTAAAAATAA+AGG - tig0023210:74737-74756 Msa1406540:CDS 25.0%
! AATTTATGTGCAAAATGCAA+TGG + tig0023210:74997-75016 None:intergenic 25.0%
!! TTTTGCACATAAATTTTCTC+TGG - tig0023210:75002-75021 Msa1406540:intron 25.0%
! AATATGGACCTCAAAAATAA+AGG + tig0023210:75466-75485 None:intergenic 25.0%
!!! TTATTTTTGAGGTCCATATT+AGG - tig0023210:75466-75485 Msa1406540:intron 25.0%
!!! TATTTTTGAGGTCCATATTA+GGG - tig0023210:75467-75486 Msa1406540:intron 25.0%
!!! AGCTATTTTACTTCAAATCA+GGG + tig0023210:75795-75814 None:intergenic 25.0%
! GAGTTCCTAATAAAATTCAA+CGG - tig0023210:75866-75885 Msa1406540:intron 25.0%
!! TAGTACCGTTGAATTTTATT+AGG + tig0023210:75874-75893 None:intergenic 25.0%
! TAATAAAATTCAACGGTACT+AGG - tig0023210:75873-75892 Msa1406540:intron 25.0%
!!! GTTTTTGCAATACATTGATT+TGG - tig0023210:75972-75991 Msa1406540:intron 25.0%
!!! AGTTGAGTTTAGTCTTTTTA+AGG - tig0023210:76039-76058 Msa1406540:intron 25.0%
! GAAGTTATAAAATCACAAGA+TGG + tig0023210:76391-76410 None:intergenic 25.0%
!! CTTGTGATTTTATAACTTCT+AGG - tig0023210:76392-76411 Msa1406540:intron 25.0%
!!! GATTTTGATTGTGTTACATA+AGG - tig0023210:76767-76786 Msa1406540:intron 25.0%
!!! TTTTGATTGTGTTACATAAG+GGG - tig0023210:76769-76788 Msa1406540:intron 25.0%
! ATTAGTTCAGTTGAAGTTTA+TGG + tig0023210:76996-77015 None:intergenic 25.0%
! ATTTCATAATCTATGCTTCT+TGG + tig0023210:77081-77100 None:intergenic 25.0%
!!! CTCTTCTAAAATTTGTCAAA+TGG - tig0023210:77102-77121 Msa1406540:intron 25.0%
!! TGACATAAGTGATTTTTCAT+CGG + tig0023210:77609-77628 None:intergenic 25.0%
! ATGAAAAATCACTTATGTCA+AGG - tig0023210:77609-77628 Msa1406540:CDS 25.0%
! TGAAAAATCACTTATGTCAA+GGG - tig0023210:77610-77629 Msa1406540:CDS 25.0%
! AAAAGTCAACATAGATATCA+AGG - tig0023210:77724-77743 Msa1406540:intron 25.0%
!! GATATGTCAAACAAGAATTT+TGG + tig0023210:77860-77879 None:intergenic 25.0%
!!! ATTTTTTTCTTCTTCATAGG+AGG - tig0023210:77938-77957 Msa1406540:intron 25.0%
!!! TTTATTGGTAATGTTAAGGA+TGG - tig0023210:78181-78200 Msa1406540:five_prime_UTR 25.0%
! CCATCAAAATTTAGAGTCAA+CGG + tig0023210:73255-73274 None:intergenic 30.0%
!! GACTCTAAATTTTGATGGTT+CGG - tig0023210:73257-73276 Msa1406540:three_prime_UTR 30.0%
!!! AATTTTGATGGTTCGGTTTA+TGG - tig0023210:73264-73283 Msa1406540:three_prime_UTR 30.0%
!!! ATTTTGATGGTTCGGTTTAT+GGG - tig0023210:73265-73284 Msa1406540:three_prime_UTR 30.0%
!!! TATGGTTTTGCGTTTTGTTT+AGG - tig0023210:73689-73708 Msa1406540:CDS 30.0%
! CCAATTTTTAAATGTGTAGC+TGG + tig0023210:73909-73928 None:intergenic 30.0%
CCAGCTACACATTTAAAAAT+TGG - tig0023210:73906-73925 Msa1406540:CDS 30.0%
! TTTAAAAATTGGTTCATGGG+AGG - tig0023210:73917-73936 Msa1406540:CDS 30.0%
TGAATGATATTGTGAATTGC+AGG - tig0023210:74269-74288 Msa1406540:intron 30.0%
TTAGTCTCCCTAAAAAAAAG+AGG + tig0023210:74306-74325 None:intergenic 30.0%
!! ATAACTTGTTGAAATCGTTG+AGG - tig0023210:74601-74620 Msa1406540:intron 30.0%
GAAATGCTTGTGTACAAAAA+AGG + tig0023210:74679-74698 None:intergenic 30.0%
TTGTAGTAGGTAATATGTAC+AGG + tig0023210:74775-74794 None:intergenic 30.0%
TACATATTACCTACTACAAC+AGG - tig0023210:74776-74795 Msa1406540:CDS 30.0%
AATTACAAAAGGTTAGAGCA+AGG - tig0023210:74812-74831 Msa1406540:CDS 30.0%
! TCTATGTAGACAATTTTCGA+TGG + tig0023210:74941-74960 None:intergenic 30.0%
TCTACATAGATCTATGATGT+TGG - tig0023210:74951-74970 Msa1406540:intron 30.0%
TTATGTTGTTAATTCTCCCT+GGG + tig0023210:75225-75244 None:intergenic 30.0%
TTTATGTTGTTAATTCTCCC+TGG + tig0023210:75226-75245 None:intergenic 30.0%
AACAACAACTAAGTGACATT+GGG + tig0023210:75256-75275 None:intergenic 30.0%
TAACAACAACTAAGTGACAT+TGG + tig0023210:75257-75276 None:intergenic 30.0%
AGATTTGATAAGCAAGCTTA+TGG + tig0023210:75288-75307 None:intergenic 30.0%
!!! ATTTTTGAGGTCCATATTAG+GGG - tig0023210:75468-75487 Msa1406540:intron 30.0%
CTACACTAAACAAATGGAAT+CGG + tig0023210:75603-75622 None:intergenic 30.0%
GTTTCTCTACACTAAACAAA+TGG + tig0023210:75609-75628 None:intergenic 30.0%
TTGCTCTTCCTAGAAAAAAT+CGG - tig0023210:75647-75666 Msa1406540:intron 30.0%
!! ATTTTGACCCGATTTTTTCT+AGG + tig0023210:75658-75677 None:intergenic 30.0%
GGAAGAAGCAAAAAAAAACA+TGG + tig0023210:75774-75793 None:intergenic 30.0%
!! CAGCTATTTTACTTCAAATC+AGG + tig0023210:75796-75815 None:intergenic 30.0%
! ATTTGAAGTAAAATAGCTGC+TGG - tig0023210:75797-75816 Msa1406540:intron 30.0%
CACATGATTATTTGCGTATT+TGG - tig0023210:75932-75951 Msa1406540:intron 30.0%
!!! GTTTGTTTGCTTTTGAGTTA+GGG + tig0023210:76004-76023 None:intergenic 30.0%
!!! AGTTTGTTTGCTTTTGAGTT+AGG + tig0023210:76005-76024 None:intergenic 30.0%
TAATGATAAAACCAACAGCA+GGG + tig0023210:76266-76285 None:intergenic 30.0%
TTAATGATAAAACCAACAGC+AGG + tig0023210:76267-76286 None:intergenic 30.0%
! AATTGATAATCACAATACGC+AGG + tig0023210:76294-76313 None:intergenic 30.0%
! CACAATCTTTTAGATTGTGA+GGG + tig0023210:76567-76586 None:intergenic 30.0%
! TCACAATCTTTTAGATTGTG+AGG + tig0023210:76568-76587 None:intergenic 30.0%
! AAAGATTGTGATTTGCATCA+AGG - tig0023210:76577-76596 Msa1406540:intron 30.0%
AGTTCTTATATTACCTGAAC+TGG + tig0023210:76740-76759 None:intergenic 30.0%
GTTCAGGTAATATAAGAACT+TGG - tig0023210:76740-76759 Msa1406540:intron 30.0%
AACATTTCTTCTTTGCTTGT+TGG - tig0023210:76849-76868 Msa1406540:intron 30.0%
AACTTATCAATGGAATGATG+AGG - tig0023210:76884-76903 Msa1406540:intron 30.0%
TTAAACATGATGATCCTAAG+AGG + tig0023210:76964-76983 None:intergenic 30.0%
!!! ATGTTGACTTTTGCATCATT+AGG + tig0023210:77716-77735 None:intergenic 30.0%
!! ACATTCTGAAATTCCCAAAT+CGG + tig0023210:77895-77914 None:intergenic 30.0%
!! ACCTAGAAATGTTTTTACAC+GGG + tig0023210:78007-78026 None:intergenic 30.0%
!! CACCTAGAAATGTTTTTACA+CGG + tig0023210:78008-78027 None:intergenic 30.0%
GGTAAACATAGTTTACTTGA+AGG + tig0023210:78086-78105 None:intergenic 30.0%
TGTTTACCTTGTTAAACATC+CGG - tig0023210:78098-78117 Msa1406540:five_prime_UTR 30.0%
! ATACTCGTATTGCTTTGTTA+AGG - tig0023210:78135-78154 Msa1406540:five_prime_UTR 30.0%
AACAGAATGCAAAACCCTAA+CGG + tig0023210:73214-73233 None:intergenic 35.0%
!!! CCGTTGACTCTAAATTTTGA+TGG - tig0023210:73252-73271 Msa1406540:three_prime_UTR 35.0%
GTATCAAATCTAACAGCGAA+GGG + tig0023210:73770-73789 None:intergenic 35.0%
TGTATCAAATCTAACAGCGA+AGG + tig0023210:73771-73790 None:intergenic 35.0%
GACACTTTGTCAAGAGAATT+CGG - tig0023210:73794-73813 Msa1406540:CDS 35.0%
! TGCATGTGGTTTTTCGTTTT+GGG - tig0023210:73954-73973 Msa1406540:CDS 35.0%
GAAATATGAAGGTGACTTAG+TGG - tig0023210:74038-74057 Msa1406540:intron 35.0%
AACACACATGTAATTACGTG+TGG - tig0023210:74220-74239 Msa1406540:intron 35.0%
!!! CAGACAGCCTCTTTTTTTTA+GGG - tig0023210:74296-74315 Msa1406540:intron 35.0%
! CAATCAACGACAGATTTTAC+CGG - tig0023210:74354-74373 Msa1406540:intron 35.0%
AAGAATATACCTATGTGTGC+TGG + tig0023210:74388-74407 None:intergenic 35.0%
AGCAAACATCCACATATCAA+AGG + tig0023210:74422-74441 None:intergenic 35.0%
! TGGTTTGTCATAAACTGTGT+AGG - tig0023210:74493-74512 Msa1406540:intron 35.0%
TTTATTGGGAGTCCCTAATA+TGG - tig0023210:74721-74740 Msa1406540:CDS 35.0%
!!! TGGGTGGACCTTTATTTTTA+GGG + tig0023210:74748-74767 None:intergenic 35.0%
!!! ATGGGTGGACCTTTATTTTT+AGG + tig0023210:74749-74768 None:intergenic 35.0%
TAAAAATAAAGGTCCACCCA+TGG - tig0023210:74748-74767 Msa1406540:CDS 35.0%
TTAAGGTAACCTGTTGTAGT+AGG + tig0023210:74788-74807 None:intergenic 35.0%
! CAGTTTGGTAGTTTCATAGA+AGG - tig0023210:74846-74865 Msa1406540:intron 35.0%
GAATTGAAAGAGAGTTGGAA+AGG - tig0023210:74885-74904 Msa1406540:CDS 35.0%
GAGAGTTGGAAAGGAATATT+TGG - tig0023210:74894-74913 Msa1406540:CDS 35.0%
GTTGGAAAGGAATATTTGGT+TGG - tig0023210:74898-74917 Msa1406540:CDS 35.0%
ACACAAGGCAGGATAATAAA+AGG + tig0023210:75116-75135 None:intergenic 35.0%
!!! GGTTTTTGTTTCTGTTATGC+AGG + tig0023210:75147-75166 None:intergenic 35.0%
ATGTAAAAAAAGGATTCCCC+AGG - tig0023210:75205-75224 Msa1406540:intron 35.0%
TGTAAAAAAAGGATTCCCCA+GGG - tig0023210:75206-75225 Msa1406540:intron 35.0%
TATGTTGTTAATTCTCCCTG+GGG + tig0023210:75224-75243 None:intergenic 35.0%
CTATAGCAGGTAATATGCAT+GGG - tig0023210:75428-75447 Msa1406540:intron 35.0%
CAAAAATAAAGGTCCACCAA+TGG + tig0023210:75455-75474 None:intergenic 35.0%
!!! TTGGTGGACCTTTATTTTTG+AGG - tig0023210:75455-75474 Msa1406540:intron 35.0%
TAAACAAGAGCCAAACAAGA+TGG + tig0023210:75567-75586 None:intergenic 35.0%
TGCTCTTCCTAGAAAAAATC+GGG - tig0023210:75648-75667 Msa1406540:intron 35.0%
! CATGTTTTGCAATGTGAACA+AGG - tig0023210:76418-76437 Msa1406540:intron 35.0%
! GTTGGCTTAAGAACTTAAGA+CGG + tig0023210:76486-76505 None:intergenic 35.0%
AGTGAATCAACCATTATCTC+TGG + tig0023210:76511-76530 None:intergenic 35.0%
! CTATCTAAGGTAATAGCAGA+AGG + tig0023210:76694-76713 None:intergenic 35.0%
TCTTATATTACCTGAACTGG+AGG + tig0023210:76737-76756 None:intergenic 35.0%
TTGTTATAGATCTGCCTCTT+AGG - tig0023210:76947-76966 Msa1406540:intron 35.0%
! TAATTCCGAAGCTGATTCAA+AGG - tig0023210:77379-77398 Msa1406540:intron 35.0%
! AATTCCGAAGCTGATTCAAA+GGG - tig0023210:77380-77399 Msa1406540:intron 35.0%
AAATCGCTCATTGACATAGA+AGG + tig0023210:77446-77465 None:intergenic 35.0%
! ATGTCAATGAGCGATTTTCT+TGG - tig0023210:77449-77468 Msa1406540:CDS 35.0%
GCATCACATTTCCAAAGAAA+TGG - tig0023210:77481-77500 Msa1406540:CDS 35.0%
ATTTCCAAAGAAATGGCTTC+AGG - tig0023210:77488-77507 Msa1406540:CDS 35.0%
TTTCCAAAGAAATGGCTTCA+GGG - tig0023210:77489-77508 Msa1406540:CDS 35.0%
AATCTTTCAGCAGAAAAGGA+AGG + tig0023210:77518-77537 None:intergenic 35.0%
! TTCCTTTTCTGCTGAAAGAT+TGG - tig0023210:77517-77536 Msa1406540:CDS 35.0%
! ATTGGAGTACCAAGAAATGA+TGG - tig0023210:77535-77554 Msa1406540:CDS 35.0%
TAATGCCATCCATCATTTCT+TGG + tig0023210:77547-77566 None:intergenic 35.0%
!! CATTCTGAAATTCCCAAATC+GGG + tig0023210:77894-77913 None:intergenic 35.0%
ACTATCAACGAGACTCAAAA+TGG + tig0023210:78057-78076 None:intergenic 35.0%
GTTTACCTTGTTAAACATCC+GGG - tig0023210:78099-78118 Msa1406540:five_prime_UTR 35.0%
! TCGTATTGCTTTGTTAAGGA+TGG - tig0023210:78139-78158 Msa1406540:intron 35.0%
GGACGTAAAGAGAAGAAAGA+GGG + tig0023210:73187-73206 None:intergenic 40.0%
AGGACGTAAAGAGAAGAAAG+AGG + tig0023210:73188-73207 None:intergenic 40.0%
! TCTTTACGTCCTTTTCCGTT+AGG - tig0023210:73196-73215 Msa1406540:three_prime_UTR 40.0%
! CTTTACGTCCTTTTCCGTTA+GGG - tig0023210:73197-73216 Msa1406540:three_prime_UTR 40.0%
ATGCAAAACCCTAACGGAAA+AGG + tig0023210:73208-73227 None:intergenic 40.0%
TAAGAATCCCCGTTCTCAAT+GGG - tig0023210:73291-73310 Msa1406540:three_prime_UTR 40.0%
AAGACGATTCCCATTGAGAA+CGG + tig0023210:73303-73322 None:intergenic 40.0%
GATCTCAAATTTGGGGGAAA+TGG + tig0023210:73338-73357 None:intergenic 40.0%
ATCCTCGATCTCAAATTTGG+GGG + tig0023210:73344-73363 None:intergenic 40.0%
GATCCTCGATCTCAAATTTG+GGG + tig0023210:73345-73364 None:intergenic 40.0%
GGATCCTCGATCTCAAATTT+GGG + tig0023210:73346-73365 None:intergenic 40.0%
GGAGCATGTTGATCTTGAAT+GGG + tig0023210:73367-73386 None:intergenic 40.0%
! AGGAGCATGTTGATCTTGAA+TGG + tig0023210:73368-73387 None:intergenic 40.0%
TCCTGAGACTTAAACCCAAA+GGG + tig0023210:73743-73762 None:intergenic 40.0%
TTCCTGAGACTTAAACCCAA+AGG + tig0023210:73744-73763 None:intergenic 40.0%
TGCTTCAGTTGAAAAGCTGA+AGG - tig0023210:73872-73891 Msa1406540:CDS 40.0%
! CTGCATGTGGTTTTTCGTTT+TGG - tig0023210:73953-73972 Msa1406540:CDS 40.0%
! TTGCCAAACAGAAGCTTGTT+TGG - tig0023210:74073-74092 Msa1406540:intron 40.0%
! TGCCAAACAGAAGCTTGTTT+GGG - tig0023210:74074-74093 Msa1406540:intron 40.0%
TTCCCAAACAAGCTTCTGTT+TGG + tig0023210:74079-74098 None:intergenic 40.0%
CTTGTTTGGGAAGTTCTTGA+GGG - tig0023210:74087-74106 Msa1406540:intron 40.0%
!! GGCTTTAAGTTGACTGATGT+CGG + tig0023210:74145-74164 None:intergenic 40.0%
AAAGCCAATTGTCCTGATGA+TGG - tig0023210:74159-74178 Msa1406540:intron 40.0%
CCTAAAAAAAAGAGGCTGTC+TGG + tig0023210:74298-74317 None:intergenic 40.0%
!!! CCAGACAGCCTCTTTTTTTT+AGG - tig0023210:74295-74314 Msa1406540:intron 40.0%
AATGTGTGCTTTCTAGGTTG+AGG + tig0023210:74330-74349 None:intergenic 40.0%
! AACCTAGAAAGCACACATTG+TGG - tig0023210:74331-74350 Msa1406540:intron 40.0%
TACAGCTGTCCTTTGATATG+TGG - tig0023210:74410-74429 Msa1406540:intron 40.0%
! ACTTGTTGAAATCGTTGAGG+AGG - tig0023210:74604-74623 Msa1406540:intron 40.0%
GGTAATATGTACAGGTCCAT+GGG + tig0023210:74767-74786 None:intergenic 40.0%
AGGTAATATGTACAGGTCCA+TGG + tig0023210:74768-74787 None:intergenic 40.0%
! GGTAGTTTCATAGAAGGCAT+TGG - tig0023210:74852-74871 Msa1406540:intron 40.0%
!! GTTTCATAGAAGGCATTGGA+AGG - tig0023210:74856-74875 Msa1406540:intron 40.0%
GGAAGGAATTGAAAGAGAGT+TGG - tig0023210:74880-74899 Msa1406540:CDS 40.0%
TTCTCTGGATGTTGAGAACT+TGG - tig0023210:75017-75036 Msa1406540:intron 40.0%
ATGCAGGAAGAGATTACACA+AGG + tig0023210:75131-75150 None:intergenic 40.0%
CTGCAAATCAATGTCATGCT+AGG - tig0023210:75320-75339 Msa1406540:intron 40.0%
TGCATATTACCTGCTATAGC+AGG + tig0023210:75427-75446 None:intergenic 40.0%
GCTATAGCAGGTAATATGCA+TGG - tig0023210:75427-75446 Msa1406540:intron 40.0%
AAATAAGGGAGCCCCTAATA+TGG + tig0023210:75482-75501 None:intergenic 40.0%
! TAGGGGCTCCCTTATTTATT+TGG - tig0023210:75485-75504 Msa1406540:intron 40.0%
ACGTCCTATTCCATCTTGTT+TGG - tig0023210:75554-75573 Msa1406540:intron 40.0%
AGAGCCAAACAAGATGGAAT+AGG + tig0023210:75561-75580 None:intergenic 40.0%
ATGTCCTGTTCCATCTTGTT+TGG - tig0023210:76360-76379 Msa1406540:intron 40.0%
! TGTCCTGTTCCATCTTGTTT+GGG - tig0023210:76361-76380 Msa1406540:intron 40.0%
! TTGTGATTTGCATCAAGGCA+AGG - tig0023210:76582-76601 Msa1406540:intron 40.0%
! TGTGATTTGCATCAAGGCAA+GGG - tig0023210:76583-76602 Msa1406540:intron 40.0%
ATATTACCTGAACTGGAGGA+AGG + tig0023210:76733-76752 None:intergenic 40.0%
TGATCCCTTTGAATCAGCTT+CGG + tig0023210:77387-77406 None:intergenic 40.0%
ATTCAAAGGGATCAAGACAC+TGG - tig0023210:77393-77412 Msa1406540:intron 40.0%
TTCAAAGGGATCAAGACACT+GGG - tig0023210:77394-77413 Msa1406540:intron 40.0%
TGGGATCAAATAAAACTGCC+TGG - tig0023210:77413-77432 Msa1406540:intron 40.0%
GGGATCAAATAAAACTGCCT+GGG - tig0023210:77414-77433 Msa1406540:intron 40.0%
TGGAAATGTGATGCTCAATG+TGG + tig0023210:77475-77494 None:intergenic 40.0%
TTCCAAAGAAATGGCTTCAG+GGG - tig0023210:77490-77509 Msa1406540:CDS 40.0%
CTCCAATCTTTCAGCAGAAA+AGG + tig0023210:77522-77541 None:intergenic 40.0%
! GAGTACCAAGAAATGATGGA+TGG - tig0023210:77539-77558 Msa1406540:CDS 40.0%
ACATCTGCTTAACGACAATC+AGG - tig0023210:77571-77590 Msa1406540:CDS 40.0%
AGATATCAAGGCTACTGAAG+AGG - tig0023210:77736-77755 Msa1406540:intron 40.0%
AGATGTTTATGGTGGCAATC+CGG - tig0023210:77766-77785 Msa1406540:intron 40.0%
ATGTCGAGGAAAGACTCATT+TGG - tig0023210:77797-77816 Msa1406540:intron 40.0%
TTTGGAAGAGATGCAATTCG+AGG + tig0023210:77842-77861 None:intergenic 40.0%
! TCAGAAGATTAGTCCCGATT+TGG - tig0023210:77878-77897 Msa1406540:intron 40.0%
! CAGAAGATTAGTCCCGATTT+GGG - tig0023210:77879-77898 Msa1406540:intron 40.0%
GCCCGTGTAAAAACATTTCT+AGG - tig0023210:78003-78022 Msa1406540:CDS 40.0%
ACATACCCGGATGTTTAACA+AGG + tig0023210:78107-78126 None:intergenic 40.0%
TTGTTAAACATCCGGGTATG+TGG - tig0023210:78106-78125 Msa1406540:five_prime_UTR 40.0%
! AGTATCGAAATCCACATACC+CGG + tig0023210:78120-78139 None:intergenic 40.0%
AAAGAGAAGAAAGAGGGCGA+AGG + tig0023210:73181-73200 None:intergenic 45.0%
GTCAACGGAGAAGAAATCGA+AGG + tig0023210:73240-73259 None:intergenic 45.0%
CTAAGAATCCCCGTTCTCAA+TGG - tig0023210:73290-73309 Msa1406540:three_prime_UTR 45.0%
AGACGATTCCCATTGAGAAC+GGG + tig0023210:73302-73321 None:intergenic 45.0%
CTCAAATTTGGGGGAAATGG+AGG + tig0023210:73335-73354 None:intergenic 45.0%
! TTCCCCCAAATTTGAGATCG+AGG - tig0023210:73339-73358 Msa1406540:three_prime_UTR 45.0%
GGGATCCTCGATCTCAAATT+TGG + tig0023210:73347-73366 None:intergenic 45.0%
! ACTTTGTGACGCTTGTTGAG+AGG + tig0023210:73388-73407 None:intergenic 45.0%
ACTTAATGAGCCTAGCCCTT+TGG - tig0023210:73725-73744 Msa1406540:CDS 45.0%
CTTAATGAGCCTAGCCCTTT+GGG - tig0023210:73726-73745 Msa1406540:CDS 45.0%
AGACTTAAACCCAAAGGGCT+AGG + tig0023210:73738-73757 None:intergenic 45.0%
TACATTCGAGACTCTGCATG+TGG - tig0023210:73940-73959 Msa1406540:CDS 45.0%
GCTTGTTTGGGAAGTTCTTG+AGG - tig0023210:74086-74105 Msa1406540:intron 45.0%
AGGTCCATCATCAGGACAAT+TGG + tig0023210:74166-74185 None:intergenic 45.0%
AATGTGCTAGGTCCATCATC+AGG + tig0023210:74174-74193 None:intergenic 45.0%
ACCTAGCACATTGACCTTAG+TGG - tig0023210:74182-74201 Msa1406540:intron 45.0%
ACCACTAAGGTCAATGTGCT+AGG + tig0023210:74186-74205 None:intergenic 45.0%
TGCCACAATGTGTGCTTTCT+AGG + tig0023210:74336-74355 None:intergenic 45.0%
! TCAACGACAGATTTTACCGG+TGG - tig0023210:74357-74376 Msa1406540:intron 45.0%
TTGAAATCGTTGAGGAGGAG+TGG - tig0023210:74609-74628 Msa1406540:intron 45.0%
AATATGTACAGGTCCATGGG+TGG + tig0023210:74764-74783 None:intergenic 45.0%
AGGTTAGAGCAAGGAATGAG+AGG - tig0023210:74821-74840 Msa1406540:CDS 45.0%
GGTTAGAGCAAGGAATGAGA+GGG - tig0023210:74822-74841 Msa1406540:CDS 45.0%
AAGGAATGAGAGGGACAGTT+TGG - tig0023210:74831-74850 Msa1406540:CDS 45.0%
!! TCATAGAAGGCATTGGAAGG+TGG - tig0023210:74859-74878 Msa1406540:intron 45.0%
AGGAAGAGATTACACAAGGC+AGG + tig0023210:75127-75146 None:intergenic 45.0%
ATGTCATGCTAGGTAGTGCT+TGG - tig0023210:75330-75349 Msa1406540:intron 45.0%
TTGGAGAAGAGTGAAGTGGT+TGG - tig0023210:75349-75368 Msa1406540:intron 45.0%
TGGAGAAGAGTGAAGTGGTT+GGG - tig0023210:75350-75369 Msa1406540:intron 45.0%
TTAGGGTAACCTGCTATAGC+AGG - tig0023210:75415-75434 Msa1406540:intron 45.0%
GGTAATATGCATGGGTCCAT+TGG - tig0023210:75436-75455 Msa1406540:intron 45.0%
AATATGCATGGGTCCATTGG+TGG - tig0023210:75439-75458 Msa1406540:intron 45.0%
GATACATTCTTCCCTGCTGT+TGG - tig0023210:76252-76271 Msa1406540:intron 45.0%
GTTCCCAAACAAGATGGAAC+AGG + tig0023210:76367-76386 None:intergenic 45.0%
GATGGAGTTCCCAAACAAGA+TGG + tig0023210:76373-76392 None:intergenic 45.0%
ACTTAAGACGGTCGTTACAC+TGG + tig0023210:76474-76493 None:intergenic 45.0%
AAGCCAACAGCCAGAGATAA+TGG - tig0023210:76498-76517 Msa1406540:intron 45.0%
CAACCATTATCTCTGGCTGT+TGG + tig0023210:76504-76523 None:intergenic 45.0%
! TGCCTCTCGTTTTCAGAACA+TGG - tig0023210:76618-76637 Msa1406540:intron 45.0%
! GCCTCTCGTTTTCAGAACAT+GGG - tig0023210:76619-76638 Msa1406540:intron 45.0%
!! TCCCATGTTCTGAAAACGAG+AGG + tig0023210:76623-76642 None:intergenic 45.0%
! GGTCGTAAATGATGGAGACA+GGG + tig0023210:76659-76678 None:intergenic 45.0%
TGCACAGACAACTTCTACTG+AGG + tig0023210:77233-77252 None:intergenic 45.0%
TTGTCTGTGCAGCATCTACA+TGG - tig0023210:77242-77261 Msa1406540:CDS 45.0%
TACATCGCTTCTGTTGCATG+TGG + tig0023210:77359-77378 None:intergenic 45.0%
CGCTCATTGACATAGAAGGA+CGG + tig0023210:77442-77461 None:intergenic 45.0%
ATCCCCTGAAGCCATTTCTT+TGG + tig0023210:77495-77514 None:intergenic 45.0%
GCCCAATTCACATGACAACA+CGG - tig0023210:77676-77695 Msa1406540:intron 45.0%
CCCGTGTTGTCATGTGAATT+GGG + tig0023210:77680-77699 None:intergenic 45.0%
CCCAATTCACATGACAACAC+GGG - tig0023210:77677-77696 Msa1406540:intron 45.0%
GAGGACTCGAGAGATGTTTA+TGG - tig0023210:77755-77774 Msa1406540:intron 45.0%
GACTCGAGAGATGTTTATGG+TGG - tig0023210:77758-77777 Msa1406540:intron 45.0%
!! TCATAGGAGGCACTAGCATT+TGG - tig0023210:77951-77970 Msa1406540:intron 45.0%
!!! TTTTTATTTATAGTTTAATA+GGG - tig0023210:76160-76179 Msa1406540:intron 5.0%
AGAAAGAGGGCGAAGGAGAA+GGG + tig0023210:73174-73193 None:intergenic 50.0%
AAGAAAGAGGGCGAAGGAGA+AGG + tig0023210:73175-73194 None:intergenic 50.0%
GACGATTCCCATTGAGAACG+GGG + tig0023210:73301-73320 None:intergenic 50.0%
! GCCCTTTGGGTTTAAGTCTC+AGG - tig0023210:73739-73758 Msa1406540:CDS 50.0%
! GACAGATTTTACCGGTGGAC+AGG - tig0023210:74362-74381 Msa1406540:intron 50.0%
!! AGAAGGCATTGGAAGGTGGA+AGG - tig0023210:74863-74882 Msa1406540:intron 50.0%
GTGCTTGGAGAAGAGTGAAG+TGG - tig0023210:75345-75364 Msa1406540:intron 50.0%
TTCTCAATAGCAGCGGATCG+TGG + tig0023210:76544-76563 None:intergenic 50.0%
GTGAGGGTTCTCAATAGCAG+CGG + tig0023210:76551-76570 None:intergenic 50.0%
TTGCATCAAGGCAAGGGCAA+TGG - tig0023210:76589-76608 Msa1406540:intron 50.0%
GATGGAGACAGGGATGAATG+AGG + tig0023210:76649-76668 None:intergenic 50.0%
! CGGTCGTAAATGATGGAGAC+AGG + tig0023210:76660-76679 None:intergenic 50.0%
CTGTGCTCGGTCGTAAATGA+TGG + tig0023210:76667-76686 None:intergenic 50.0%
AGCAGAAGGATCACTGTGCT+CGG + tig0023210:76680-76699 None:intergenic 50.0%
TTCGCAGGGCACACTATCTA+AGG + tig0023210:76707-76726 None:intergenic 50.0%
! ATGTGAATTGGGCACTGCTG+GGG + tig0023210:77669-77688 None:intergenic 50.0%
! CATGTGAATTGGGCACTGCT+GGG + tig0023210:77670-77689 None:intergenic 50.0%
! TCATGTGAATTGGGCACTGC+TGG + tig0023210:77671-77690 None:intergenic 50.0%
GCCCGTGTTGTCATGTGAAT+TGG + tig0023210:77681-77700 None:intergenic 50.0%
GACAACACGGGCTCTATTGA+AGG - tig0023210:77689-77708 Msa1406540:intron 50.0%
ATCGTTGAGGAGGAGTGGTC+AGG - tig0023210:74614-74633 Msa1406540:intron 55.0%
! GAAGCACCTTCCTCCAGTTC+AGG - tig0023210:76724-76743 Msa1406540:intron 55.0%
! TGTGAATTGGGCACTGCTGG+GGG + tig0023210:77668-77687 None:intergenic 55.0%
GAGTCTTTCCTCGACATGCC+TGG + tig0023210:77794-77813 None:intergenic 55.0%
! ATGTGTGCTGGCCTGTCCAC+CGG + tig0023210:74376-74395 None:intergenic 60.0%
GTGGACAGGCCAGCACACAT+AGG - tig0023210:74376-74395 Msa1406540:intron 60.0%
!! CTGGAGGAAGGTGCTTCGCA+GGG + tig0023210:76721-76740 None:intergenic 60.0%
!! ACTGGAGGAAGGTGCTTCGC+AGG + tig0023210:76722-76741 None:intergenic 60.0%
GACATAGAAGGACGGAGCCC+AGG + tig0023210:77434-77453 None:intergenic 60.0%
TATGGTGGCAATCCGGCACC+AGG - tig0023210:77773-77792 Msa1406540:intron 60.0%
TTCCTCGACATGCCTGGTGC+CGG + tig0023210:77788-77807 None:intergenic 60.0%
ATCCGGCACCAGGCATGTCG+AGG - tig0023210:77783-77802 Msa1406540:intron 65.0%
Chromosome Type Strat End Strand Name
tig0023210 gene 73158 78204 73158 ID=Msa1406540;Name=Msa1406540
tig0023210 mRNA 73158 78204 73158 ID=Msa1406540-mRNA-1;Parent=Msa1406540;Name=Msa1406540-mRNA-1;_AED=0.11;_eAED=0.11;_QI=93|0.85|0.75|1|0.71|0.5|8|315|495
tig0023210 exon 73158 73993 73158 ID=Msa1406540-mRNA-1:exon:24634;Parent=Msa1406540-mRNA-1
tig0023210 exon 74617 74861 74617 ID=Msa1406540-mRNA-1:exon:24633;Parent=Msa1406540-mRNA-1
tig0023210 exon 74871 74948 74871 ID=Msa1406540-mRNA-1:exon:24632;Parent=Msa1406540-mRNA-1
tig0023210 exon 76965 77071 76965 ID=Msa1406540-mRNA-1:exon:24631;Parent=Msa1406540-mRNA-1
tig0023210 exon 77159 77332 77159 ID=Msa1406540-mRNA-1:exon:24630;Parent=Msa1406540-mRNA-1
tig0023210 exon 77424 77651 77424 ID=Msa1406540-mRNA-1:exon:24629;Parent=Msa1406540-mRNA-1
tig0023210 exon 77957 78154 77957 ID=Msa1406540-mRNA-1:exon:24628;Parent=Msa1406540-mRNA-1
tig0023210 exon 78175 78204 78175 ID=Msa1406540-mRNA-1:exon:24627;Parent=Msa1406540-mRNA-1
tig0023210 five_prime_UTR 78175 78204 78175 ID=Msa1406540-mRNA-1:five_prime_utr;Parent=Msa1406540-mRNA-1
tig0023210 five_prime_UTR 78092 78154 78092 ID=Msa1406540-mRNA-1:five_prime_utr;Parent=Msa1406540-mRNA-1
tig0023210 CDS 77957 78091 77957 ID=Msa1406540-mRNA-1:cds;Parent=Msa1406540-mRNA-1
tig0023210 CDS 77424 77651 77424 ID=Msa1406540-mRNA-1:cds;Parent=Msa1406540-mRNA-1
tig0023210 CDS 77159 77332 77159 ID=Msa1406540-mRNA-1:cds;Parent=Msa1406540-mRNA-1
tig0023210 CDS 76965 77071 76965 ID=Msa1406540-mRNA-1:cds;Parent=Msa1406540-mRNA-1
tig0023210 CDS 74871 74948 74871 ID=Msa1406540-mRNA-1:cds;Parent=Msa1406540-mRNA-1
tig0023210 CDS 74617 74861 74617 ID=Msa1406540-mRNA-1:cds;Parent=Msa1406540-mRNA-1
tig0023210 CDS 73473 73993 73473 ID=Msa1406540-mRNA-1:cds;Parent=Msa1406540-mRNA-1
tig0023210 three_prime_UTR 73158 73472 73158 ID=Msa1406540-mRNA-1:three_prime_utr;Parent=Msa1406540-mRNA-1
Gene Sequence

>Msa1406540

ATGGTTCGGTTTATGGGTTCTAAGAATCCCCGTTCTCAATGGGAATCGTCTTCTGCTTCATCCTCCATTTCCCCCAAATTTGAGATCGAGGATCCCATTCAAGATCAACATGCTCCTCTCAACAAGCGTCACAAAGCTACAAATGATATACTTAATGAGCCTAGCCCTTTGGGTTTAAGTCTCAGGAAGAGCCCTTCGCTGTTAGATTTGATACAAATGACACTTTGTCAAGAGAATTCGGTTAATGCAAATACTGCAAATGATAATTTAAACTCTAAAGCAAACAAGGACGCTCGTGCTTCAGTTGAAAAGCTGAAGGCTTCAAATTTCCCAGCTACACATTTAAAAATTGGTTCATGGGAGTATAAATCGAAATATGAAGGTGACTTAGTGGCAAAGTGTTACTTTGCCAAACAGAAGCTTGTTTGGGAAGTTCTTGAGGGTGAGCTGAAAAGTAAAATAGAAATTCAATGGTCCGACATCAGTCAACTTAAAGCCAATTGTCCTGATGATGGACCTAGCACATTGACCTTAGTGGTTGCCAGACAGCCTCTTTTTTTTAGGGAGACTAATCCTCAACCTAGAAAGCACACATTGTGGCAATCAACGACAGATTTTACCGGTGGACAGGCCAGCACACATAGGCAGCATGTTTTGCAATGTGAACAAGGACTGTTGATCAAGCATTATGAAAAGCTTGTCCAGTGTAACGACCGTCTTAACCAACAGCCAGAGATAATGGTTGATTCACTTCATTTTGATCCACGATCCGCTGCTATTGAGAACCCTCACAATCTAAAAGATTGTGATTTGCATCAAGGCAAGGGCAATGGATCAGCTGCCTCTCGTTTTCAGAACATGGGATCTCCTCATTCATCCCTGTCTCCATCATTTACGACCGAGCACAGTGATCCTTCTGCTATTACCTTAGATAGTGTGCCCTGCGAAGCACCTTCCTCCAGTTCAGAAGCGATGTATAATTCCGAAGCTGATTCAAAGGGATCAAGACACTGGGATCAAATAAAACTGCCTGGGCTCCGTCCTTCTATGTCAATGAGCGATTTTCTTGGCCACATTGAGCATCACATTTCCAAAGAAATGGCTTCAGGGGATCCTTCCTTTTCTGCTGAAAGATTGGAGTACCAAGAAATGATGGATGGCATTACACAACATCTGCTTAACGACAATCAGGTTGCAACAGACTCCGATGAAAAATCACTTATGTCAAGGGTCAATTCTCTACGCTGTCTCTTACAAATGGATCCCCCAGCAGTGCCCAATTCACATGACAACACGGGCTCTATTGAAGGACCTAATGATGCAAAAGTCAACATAGATATCAAGGCTACTGAAGAGGACTCGAGAGATGTTTATGGTGGCAATCCGGCACCAGGCATGTCGAGGAAAGACTCATTTGGAGATTTGCTTCTTAGTCTTCCTCGAATTGCATCTCTTCCAAAATTCTTGTTTGACATATCAGAAGATTAG

Protein sequence

>Msa1406540

MVRFMGSKNPRSQWESSSASSSISPKFEIEDPIQDQHAPLNKRHKATNDILNEPSPLGLSLRKSPSLLDLIQMTLCQENSVNANTANDNLNSKANKDARASVEKLKASNFPATHLKIGSWEYKSKYEGDLVAKCYFAKQKLVWEVLEGELKSKIEIQWSDISQLKANCPDDGPSTLTLVVARQPLFFRETNPQPRKHTLWQSTTDFTGGQASTHRQHVLQCEQGLLIKHYEKLVQCNDRLNQQPEIMVDSLHFDPRSAAIENPHNLKDCDLHQGKGNGSAASRFQNMGSPHSSLSPSFTTEHSDPSAITLDSVPCEAPSSSSEAMYNSEADSKGSRHWDQIKLPGLRPSMSMSDFLGHIEHHISKEMASGDPSFSAERLEYQEMMDGITQHLLNDNQVATDSDEKSLMSRVNSLRCLLQMDPPAVPNSHDNTGSIEGPNDAKVNIDIKATEEDSRDVYGGNPAPGMSRKDSFGDLLLSLPRIASLPKFLFDISED*