AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1222400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222400 MtrunA17_Chr4g0073561 95.783 498 16 2 1 495 1 496 0.0 979
Msa1222400 MtrunA17_Chr4g0001981 47.746 488 184 11 51 495 60 519 8.42e-128 382
Msa1222400 MtrunA17_Chr1g0192751 41.475 217 108 6 56 264 42 247 4.35e-42 154
Msa1222400 MtrunA17_Chr4g0073591 81.690 71 13 0 120 190 14 84 1.52e-36 131
Msa1222400 MtrunA17_Chr6g0453721 37.584 149 79 4 110 253 50 189 9.49e-24 99.0
Msa1222400 MtrunA17_Chr4g0073601 66.038 53 18 0 443 495 6 58 2.07e-17 76.3
Msa1222400 MtrunA17_Chr6g0453841 33.537 164 80 5 110 253 50 204 2.18e-17 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222400 AT2G24100.1 46.471 510 213 11 1 495 1 465 1.37e-128 382
Msa1222400 AT4G30780.1 50.248 404 139 13 1 357 1 389 1.45e-108 335
Msa1222400 AT4G30780.1 40.936 171 85 2 330 495 423 582 2.86e-20 94.4
Msa1222400 AT3G05770.2 41.096 219 113 6 48 254 17 231 4.35e-34 132
Msa1222400 AT3G05770.1 41.096 219 113 6 48 254 17 231 4.74e-34 133
Msa1222400 AT1G54300.1 43.312 157 78 4 109 254 2 158 5.11e-29 117

Find 134 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATCCTCGATCTCAAATT+TGG 0.170910 8_1:-86650900 None:intergenic
GATATGTCAAACAAGAATTT+TGG 0.184107 8_1:-86655413 None:intergenic
TCATGTGAATTGGGCACTGC+TGG 0.262746 8_1:-86655224 None:intergenic
ATCCCCTGAAGCCATTTCTT+TGG 0.263985 8_1:-86655048 None:intergenic
TGCCACAATGTGTGCTTTCT+AGG 0.293917 8_1:-86651889 None:intergenic
TCAGAAGATTAGTCCCGATT+TGG 0.304438 8_1:+86655434 Msa1222400:exon
GAGGACTCGAGAGATGTTTA+TGG 0.319905 8_1:+86655311 Msa1222400:CDS
TTGCCAAACAGAAGCTTGTT+TGG 0.321183 8_1:+86651629 Msa1222400:CDS
CTTAATGAGCCTAGCCCTTT+GGG 0.327280 8_1:+86651282 Msa1222400:CDS
TAATGCCATCCATCATTTCT+TGG 0.333114 8_1:-86655100 None:intergenic
GGATCCTCGATCTCAAATTT+GGG 0.347298 8_1:-86650899 None:intergenic
ACTATCAACGAGACTCAAAA+TGG 0.348746 8_1:-86655610 None:intergenic
GACACTTTGTCAAGAGAATT+CGG 0.351718 8_1:+86651350 Msa1222400:CDS
TCATAGGAGGCACTAGCATT+TGG 0.352538 8_1:+86655507 Msa1222400:three_prime_UTR
GCCCTTTGGGTTTAAGTCTC+AGG 0.361134 8_1:+86651295 Msa1222400:CDS
GCCCGTGTTGTCATGTGAAT+TGG 0.371557 8_1:-86655234 None:intergenic
ACTTAATGAGCCTAGCCCTT+TGG 0.380538 8_1:+86651281 Msa1222400:CDS
AGTTCTTATATTACCTGAAC+TGG 0.384241 8_1:-86654293 None:intergenic
TTCCCAAACAAGCTTCTGTT+TGG 0.391805 8_1:-86651632 None:intergenic
TGTTTACCTTGTTAAACATC+CGG 0.392507 8_1:+86655654 Msa1222400:three_prime_UTR
AAGCCAACAGCCAGAGATAA+TGG 0.395009 8_1:+86654054 Msa1222400:intron
CAGAAGATTAGTCCCGATTT+GGG 0.396073 8_1:+86655435 Msa1222400:exon
CTCCAATCTTTCAGCAGAAA+AGG 0.396852 8_1:-86655075 None:intergenic
GCATCACATTTCCAAAGAAA+TGG 0.397833 8_1:+86655037 Msa1222400:CDS
AGAAAGAGGGCGAAGGAGAA+GGG 0.407538 8_1:-86650727 None:intergenic
ATTTCCAAAGAAATGGCTTC+AGG 0.408201 8_1:+86655044 Msa1222400:CDS
ATACTCGTATTGCTTTGTTA+AGG 0.412443 8_1:+86655691 Msa1222400:three_prime_UTR
AGACGATTCCCATTGAGAAC+GGG 0.414818 8_1:-86650855 None:intergenic
TTCGCAGGGCACACTATCTA+AGG 0.416227 8_1:-86654260 None:intergenic
TGCCAAACAGAAGCTTGTTT+GGG 0.418118 8_1:+86651630 Msa1222400:CDS
TTCCTCGACATGCCTGGTGC+CGG 0.420662 8_1:-86655341 None:intergenic
ACATTCTGAAATTCCCAAAT+CGG 0.428571 8_1:-86655448 None:intergenic
AAATCGCTCATTGACATAGA+AGG 0.430459 8_1:-86654999 None:intergenic
TGATCCCTTTGAATCAGCTT+CGG 0.431254 8_1:-86654940 None:intergenic
AAGAAAGAGGGCGAAGGAGA+AGG 0.437217 8_1:-86650728 None:intergenic
AAAGATTGTGATTTGCATCA+AGG 0.438860 8_1:+86654133 Msa1222400:CDS
CATGTGAATTGGGCACTGCT+GGG 0.440357 8_1:-86655223 None:intergenic
GAAGCACCTTCCTCCAGTTC+AGG 0.441844 8_1:+86654280 Msa1222400:CDS
ACTGGAGGAAGGTGCTTCGC+AGG 0.443629 8_1:-86654275 None:intergenic
CTAAGAATCCCCGTTCTCAA+TGG 0.462290 8_1:+86650846 Msa1222400:CDS
CGGTCGTAAATGATGGAGAC+AGG 0.464032 8_1:-86654213 None:intergenic
GAAATATGAAGGTGACTTAG+TGG 0.465278 8_1:+86651594 Msa1222400:CDS
CTTGTTTGGGAAGTTCTTGA+GGG 0.466937 8_1:+86651643 Msa1222400:CDS
TGGGATCAAATAAAACTGCC+TGG 0.467087 8_1:+86654969 Msa1222400:CDS
GACAACACGGGCTCTATTGA+AGG 0.467111 8_1:+86655245 Msa1222400:CDS
AGAGAATTAAATTACCACTA+AGG 0.468718 8_1:-86651752 None:intergenic
GGCTTTAAGTTGACTGATGT+CGG 0.472338 8_1:-86651698 None:intergenic
TTGTTAAACATCCGGGTATG+TGG 0.473649 8_1:+86655662 Msa1222400:three_prime_UTR
AGGTCCATCATCAGGACAAT+TGG 0.475804 8_1:-86651719 None:intergenic
AAAAGTCAACATAGATATCA+AGG 0.479802 8_1:+86655280 Msa1222400:CDS
CTGTGCTCGGTCGTAAATGA+TGG 0.481540 8_1:-86654220 None:intergenic
TCTACGCTGTCTCTTACAAA+TGG 0.481679 8_1:+86655196 Msa1222400:CDS
AGGAGCATGTTGATCTTGAA+TGG 0.481866 8_1:-86650921 None:intergenic
CCCGTGTTGTCATGTGAATT+GGG 0.482809 8_1:-86655233 None:intergenic
TAAGAATCCCCGTTCTCAAT+GGG 0.488381 8_1:+86650847 Msa1222400:CDS
ATGTGAATTGGGCACTGCTG+GGG 0.492111 8_1:-86655222 None:intergenic
TCGTATTGCTTTGTTAAGGA+TGG 0.493485 8_1:+86655695 Msa1222400:three_prime_UTR
ATGCAAAACCCTAACGGAAA+AGG 0.495498 8_1:-86650761 None:intergenic
ACCTAGCACATTGACCTTAG+TGG 0.495667 8_1:+86651738 Msa1222400:CDS
AGACTTAAACCCAAAGGGCT+AGG 0.496309 8_1:-86651291 None:intergenic
ACATCTGCTTAACGACAATC+AGG 0.501367 8_1:+86655127 Msa1222400:CDS
AGATGTTTATGGTGGCAATC+CGG 0.504171 8_1:+86655322 Msa1222400:CDS
GGTAAACATAGTTTACTTGA+AGG 0.505009 8_1:-86655639 None:intergenic
TTTCCAAAGAAATGGCTTCA+GGG 0.505175 8_1:+86655045 Msa1222400:CDS
AGTGAATCAACCATTATCTC+TGG 0.506506 8_1:-86654064 None:intergenic
TTTATTGGTAATGTTAAGGA+TGG 0.508236 8_1:+86655737 Msa1222400:three_prime_UTR
AAAGCCAATTGTCCTGATGA+TGG 0.508417 8_1:+86651715 Msa1222400:CDS
GAGTCTTTCCTCGACATGCC+TGG 0.511707 8_1:-86655347 None:intergenic
CATTCTGAAATTCCCAAATC+GGG 0.512987 8_1:-86655447 None:intergenic
GCTTGTTTGGGAAGTTCTTG+AGG 0.513290 8_1:+86651642 Msa1222400:CDS
GACATAGAAGGACGGAGCCC+AGG 0.513305 8_1:-86654987 None:intergenic
TGTGAATTGGGCACTGCTGG+GGG 0.513353 8_1:-86655221 None:intergenic
ATGTCGAGGAAAGACTCATT+TGG 0.515569 8_1:+86655353 Msa1222400:CDS
ATTGGAGTACCAAGAAATGA+TGG 0.518306 8_1:+86655091 Msa1222400:CDS
AAAGTAAAATAGAAATTCAA+TGG 0.524135 8_1:+86651674 Msa1222400:CDS
TCCTGAGACTTAAACCCAAA+GGG 0.525740 8_1:-86651296 None:intergenic
TTGCATCAAGGCAAGGGCAA+TGG 0.532360 8_1:+86654145 Msa1222400:CDS
AATGTGTGCTTTCTAGGTTG+AGG 0.532693 8_1:-86651883 None:intergenic
CAGTATAAATCGAAATATGA+AGG 0.533390 8_1:+86651583 Msa1222400:intron
AAGAATATACCTATGTGTGC+TGG 0.533619 8_1:-86651941 None:intergenic
TTTGGAAGAGATGCAATTCG+AGG 0.535660 8_1:-86655395 None:intergenic
GTTTACCTTGTTAAACATCC+GGG 0.535898 8_1:+86655655 Msa1222400:three_prime_UTR
ACTTAAGACGGTCGTTACAC+TGG 0.536403 8_1:-86654027 None:intergenic
TTGTGATTTGCATCAAGGCA+AGG 0.538238 8_1:+86654138 Msa1222400:CDS
GGAGCATGTTGATCTTGAAT+GGG 0.540041 8_1:-86650920 None:intergenic
ATTCAAAGGGATCAAGACAC+TGG 0.540745 8_1:+86654949 Msa1222400:CDS
TGCTTCAGTTGAAAAGCTGA+AGG 0.545025 8_1:+86651428 Msa1222400:CDS
GATGGAGACAGGGATGAATG+AGG 0.546725 8_1:-86654202 None:intergenic
TAATTCCGAAGCTGATTCAA+AGG 0.548618 8_1:+86654935 Msa1222400:CDS
TATGGTGGCAATCCGGCACC+AGG 0.548784 8_1:+86655329 Msa1222400:CDS
CAACCATTATCTCTGGCTGT+TGG 0.549994 8_1:-86654057 None:intergenic
TTCCAAAGAAATGGCTTCAG+GGG 0.550738 8_1:+86655046 Msa1222400:CDS
TGTGATTTGCATCAAGGCAA+GGG 0.551177 8_1:+86654139 Msa1222400:CDS
ATGTGTGCTGGCCTGTCCAC+CGG 0.553837 8_1:-86651929 None:intergenic
AATGTGCTAGGTCCATCATC+AGG 0.555133 8_1:-86651727 None:intergenic
TGTATCAAATCTAACAGCGA+AGG 0.555578 8_1:-86651324 None:intergenic
AGCAGAAGGATCACTGTGCT+CGG 0.561280 8_1:-86654233 None:intergenic
CCATCAAAATTTAGAGTCAA+CGG 0.566227 8_1:-86650808 None:intergenic
GGGATCAAATAAAACTGCCT+GGG 0.569804 8_1:+86654970 Msa1222400:CDS
AAGACGATTCCCATTGAGAA+CGG 0.569958 8_1:-86650856 None:intergenic
AATTCCGAAGCTGATTCAAA+GGG 0.570296 8_1:+86654936 Msa1222400:CDS
CTGGAGGAAGGTGCTTCGCA+GGG 0.580583 8_1:-86654274 None:intergenic
AAAGAGAAGAAAGAGGGCGA+AGG 0.582063 8_1:-86650734 None:intergenic
TCTTATATTACCTGAACTGG+AGG 0.586999 8_1:-86654290 None:intergenic
TTCTCAATAGCAGCGGATCG+TGG 0.587619 8_1:-86654097 None:intergenic
ATATTACCTGAACTGGAGGA+AGG 0.594740 8_1:-86654286 None:intergenic
AATCTTTCAGCAGAAAAGGA+AGG 0.598358 8_1:-86655071 None:intergenic
ACCACTAAGGTCAATGTGCT+AGG 0.600691 8_1:-86651739 None:intergenic
GCCCAATTCACATGACAACA+CGG 0.601317 8_1:+86655232 Msa1222400:CDS
GACGATTCCCATTGAGAACG+GGG 0.602790 8_1:-86650854 None:intergenic
GATCCTCGATCTCAAATTTG+GGG 0.605147 8_1:-86650898 None:intergenic
ACTTTGTGACGCTTGTTGAG+AGG 0.605272 8_1:-86650941 None:intergenic
TTCCTGAGACTTAAACCCAA+AGG 0.606349 8_1:-86651297 None:intergenic
AGATATCAAGGCTACTGAAG+AGG 0.606877 8_1:+86655292 Msa1222400:CDS
AACAGAATGCAAAACCCTAA+CGG 0.610835 8_1:-86650767 None:intergenic
CTATCTAAGGTAATAGCAGA+AGG 0.611346 8_1:-86654247 None:intergenic
GTATCAAATCTAACAGCGAA+GGG 0.619004 8_1:-86651323 None:intergenic
CGCTCATTGACATAGAAGGA+CGG 0.621047 8_1:-86654995 None:intergenic
GAGTACCAAGAAATGATGGA+TGG 0.630044 8_1:+86655095 Msa1222400:CDS
TTCAAAGGGATCAAGACACT+GGG 0.632188 8_1:+86654950 Msa1222400:CDS
TCCCATGTTCTGAAAACGAG+AGG 0.639975 8_1:-86654176 None:intergenic
TTTAAACTCTAAAGCAAACA+AGG 0.644174 8_1:+86651398 Msa1222400:CDS
GTCAACGGAGAAGAAATCGA+AGG 0.648412 8_1:-86650793 None:intergenic
GGTCGTAAATGATGGAGACA+GGG 0.654834 8_1:-86654212 None:intergenic
GTGGACAGGCCAGCACACAT+AGG 0.655241 8_1:+86651932 Msa1222400:CDS
GACTCGAGAGATGTTTATGG+TGG 0.656722 8_1:+86655314 Msa1222400:CDS
CCCAATTCACATGACAACAC+GGG 0.664172 8_1:+86655233 Msa1222400:CDS
ATCCTCGATCTCAAATTTGG+GGG 0.664332 8_1:-86650897 None:intergenic
GTTGGCTTAAGAACTTAAGA+CGG 0.666748 8_1:-86654039 None:intergenic
GTGAGGGTTCTCAATAGCAG+CGG 0.669144 8_1:-86654104 None:intergenic
ACATACCCGGATGTTTAACA+AGG 0.690588 8_1:-86655660 None:intergenic
AACCTAGAAAGCACACATTG+TGG 0.694172 8_1:+86651887 Msa1222400:CDS
AGTATCGAAATCCACATACC+CGG 0.706310 8_1:-86655673 None:intergenic
TGGAAATGTGATGCTCAATG+TGG 0.744777 8_1:-86655028 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATGTTTACTTTTATTT+TGG + chr8_1:86651201-86651220 Msa1222400:intron 10.0%
!!! ATAATGTTTACTTTTATTTT+GGG + chr8_1:86651202-86651221 Msa1222400:intron 10.0%
!! TTCTATTAAGATTTATTTAT+TGG + chr8_1:86652262-86652281 Msa1222400:intron 10.0%
!! TCTATTAAGATTTATTTATT+GGG + chr8_1:86652263-86652282 Msa1222400:intron 10.0%
!! TTTCATTTAAATGTAAAAAA+AGG + chr8_1:86652751-86652770 Msa1222400:intron 10.0%
!! AAATTATCATTAGAAAAAAT+TGG + chr8_1:86653246-86653265 Msa1222400:intron 10.0%
!! AATTATCATTAGAAAAAATT+GGG + chr8_1:86653247-86653266 Msa1222400:intron 10.0%
!!! CTTTTTATTTATAGTTTAAT+AGG + chr8_1:86653715-86653734 Msa1222400:intron 10.0%
!!! GTTTTTTAACTTTTTTTTAT+TGG + chr8_1:86655722-86655741 Msa1222400:three_prime_UTR 10.0%
!! AAAGTAAAATAGAAATTCAA+TGG + chr8_1:86651674-86651693 Msa1222400:CDS 15.0%
!! TAAATCTATATGATTATGAA+TGG - chr8_1:86652011-86652030 None:intergenic 15.0%
!!! TAAAAGTACATTAATTTTGT+TGG + chr8_1:86652029-86652048 Msa1222400:intron 15.0%
!!! AATCTCTAATATTTTACATA+GGG - chr8_1:86652091-86652110 None:intergenic 15.0%
!! ACCTTAAAAAAAATTACAAA+AGG + chr8_1:86652357-86652376 Msa1222400:intron 15.0%
!!! ACCTTTTGTAATTTTTTTTA+AGG - chr8_1:86652361-86652380 None:intergenic 15.0%
!! TGAATTAAAATTAATGTTCA+GGG - chr8_1:86652638-86652657 None:intergenic 15.0%
!! TAAAATAACAGAAATTAGTT+GGG - chr8_1:86652724-86652743 None:intergenic 15.0%
!! TTAAAATAACAGAAATTAGT+TGG - chr8_1:86652725-86652744 None:intergenic 15.0%
!!! ATTCAATTTTTACTAAACTT+AGG + chr8_1:86652953-86652972 Msa1222400:intron 15.0%
!!! TTCAATTTTTACTAAACTTA+GGG + chr8_1:86652954-86652973 Msa1222400:intron 15.0%
!!! AATTGATAATACTTTTAATG+CGG + chr8_1:86653380-86653399 Msa1222400:intron 15.0%
!!! TATTTTACTGATATTTTACT+TGG - chr8_1:86654593-86654612 None:intergenic 15.0%
!!! TTAATTTTTTTCTTCTTCAT+AGG + chr8_1:86655491-86655510 Msa1222400:three_prime_UTR 15.0%
!!! ATTATTTTAATGAAGAATCT+TGG + chr8_1:86655532-86655551 Msa1222400:three_prime_UTR 15.0%
!!! TTTTTTTATTGGTAATGTTA+AGG + chr8_1:86655733-86655752 Msa1222400:three_prime_UTR 15.0%
!!! TTCCTTTTTCTCATTAATTA+TGG + chr8_1:86651227-86651246 Msa1222400:intron 20.0%
!! AACCATAATTAATGAGAAAA+AGG - chr8_1:86651232-86651251 None:intergenic 20.0%
!!! ACATTTAAAAATTGGTTCAT+GGG + chr8_1:86651470-86651489 Msa1222400:CDS 20.0%
!!! ATCTCTAATATTTTACATAG+GGG - chr8_1:86652090-86652109 None:intergenic 20.0%
!!! CAATCTCTAATATTTTACAT+AGG - chr8_1:86652092-86652111 None:intergenic 20.0%
!!! ATTAGAGATTGATTTTCAAA+TGG + chr8_1:86652101-86652120 Msa1222400:intron 20.0%
!!! TTAGAGATTGATTTTCAAAT+GGG + chr8_1:86652102-86652121 Msa1222400:intron 20.0%
!!! ACTTATTTCTTCTTCTTTTT+CGG + chr8_1:86652597-86652616 Msa1222400:intron 20.0%
!! GTGAATTAAAATTAATGTTC+AGG - chr8_1:86652639-86652658 None:intergenic 20.0%
!! AAACTTGACCAAATAAATAA+GGG - chr8_1:86653052-86653071 None:intergenic 20.0%
!! TAAACTTGACCAAATAAATA+AGG - chr8_1:86653053-86653072 None:intergenic 20.0%
!!! ATTTTTTACTTTGCATTGTT+TGG + chr8_1:86653075-86653094 Msa1222400:intron 20.0%
!! TTTATAGTTTAATAGGGTTA+TGG + chr8_1:86653722-86653741 Msa1222400:intron 20.0%
!!! TCATATTTTCAATAATGCTA+TGG + chr8_1:86653758-86653777 Msa1222400:intron 20.0%
!!! ATTTTGATTGTGTTACATAA+GGG + chr8_1:86654324-86654343 Msa1222400:intron 20.0%
!! AATGATTGAAAACTTATCAA+TGG + chr8_1:86654430-86654449 Msa1222400:intron 20.0%
!!! TCTTCTAAAATTTGTCAAAT+GGG + chr8_1:86654659-86654678 Msa1222400:intron 20.0%
!! CCAAAACACATTAATAAATA+AGG - chr8_1:86654870-86654889 None:intergenic 20.0%
!!! CCTTATTTATTAATGTGTTT+TGG + chr8_1:86654867-86654886 Msa1222400:intron 20.0%
!!! TTTAAACTCTAAAGCAAACA+AGG + chr8_1:86651398-86651417 Msa1222400:CDS 25.0%
!! CAATTTTTAAATGTGTAGCT+GGG - chr8_1:86651464-86651483 None:intergenic 25.0%
!! CACATTTAAAAATTGGTTCA+TGG + chr8_1:86651469-86651488 Msa1222400:CDS 25.0%
! CAGTATAAATCGAAATATGA+AGG + chr8_1:86651583-86651602 Msa1222400:intron 25.0%
! AGAGAATTAAATTACCACTA+AGG - chr8_1:86651755-86651774 None:intergenic 25.0%
! TTCATAAATCATTGAACACA+GGG - chr8_1:86651809-86651828 None:intergenic 25.0%
! ATTCATAAATCATTGAACAC+AGG - chr8_1:86651810-86651829 None:intergenic 25.0%
!!! TAATTTGCTTATAGTATCTG+TGG + chr8_1:86652196-86652215 Msa1222400:intron 25.0%
! TTATAGTATCTGTGGAATTT+AGG + chr8_1:86652204-86652223 Msa1222400:intron 25.0%
!!! TATTTTTAGGGTCCATATTA+GGG - chr8_1:86652292-86652311 None:intergenic 25.0%
!!! TTATTTTTAGGGTCCATATT+AGG - chr8_1:86652293-86652312 None:intergenic 25.0%
! AATATGGACCCTAAAAATAA+AGG + chr8_1:86652293-86652312 Msa1222400:intron 25.0%
!! TCTATGTAGAAAATTTTCGA+TGG - chr8_1:86652497-86652516 None:intergenic 25.0%
! AATTTATGTGCAAAATGCAA+TGG - chr8_1:86652553-86652572 None:intergenic 25.0%
!! TTTTGCACATAAATTTTCTC+TGG + chr8_1:86652558-86652577 Msa1222400:intron 25.0%
! AATATGGACCTCAAAAATAA+AGG - chr8_1:86653022-86653041 None:intergenic 25.0%
!!! TTATTTTTGAGGTCCATATT+AGG + chr8_1:86653022-86653041 Msa1222400:intron 25.0%
!!! TATTTTTGAGGTCCATATTA+GGG + chr8_1:86653023-86653042 Msa1222400:intron 25.0%
!!! AGCTATTTTACTTCAAATCA+GGG - chr8_1:86653351-86653370 None:intergenic 25.0%
! GAGTTCCTAATAAAATTCAA+CGG + chr8_1:86653422-86653441 Msa1222400:intron 25.0%
!! TAGTACCGTTGAATTTTATT+AGG - chr8_1:86653430-86653449 None:intergenic 25.0%
! TAATAAAATTCAACGGTACT+AGG + chr8_1:86653429-86653448 Msa1222400:intron 25.0%
!!! GTTTTTGCAATACATTGATT+TGG + chr8_1:86653528-86653547 Msa1222400:intron 25.0%
!!! AGTTGAGTTTAGTCTTTTTA+AGG + chr8_1:86653595-86653614 Msa1222400:intron 25.0%
! GAAGTTATAAAATCACAAGA+TGG - chr8_1:86653947-86653966 None:intergenic 25.0%
!! CTTGTGATTTTATAACTTCT+AGG + chr8_1:86653948-86653967 Msa1222400:intron 25.0%
!!! GATTTTGATTGTGTTACATA+AGG + chr8_1:86654323-86654342 Msa1222400:intron 25.0%
!!! TTTTGATTGTGTTACATAAG+GGG + chr8_1:86654325-86654344 Msa1222400:intron 25.0%
! ATTAGTTCAGTTGAAGTTTA+TGG - chr8_1:86654552-86654571 None:intergenic 25.0%
! ATTTCATAATCTATGCTTCT+TGG - chr8_1:86654637-86654656 None:intergenic 25.0%
!!! CTCTTCTAAAATTTGTCAAA+TGG + chr8_1:86654658-86654677 Msa1222400:intron 25.0%
!! TGACATAAGTGATTTTTCAT+CGG - chr8_1:86655165-86655184 None:intergenic 25.0%
! ATGAAAAATCACTTATGTCA+AGG + chr8_1:86655165-86655184 Msa1222400:CDS 25.0%
! TGAAAAATCACTTATGTCAA+GGG + chr8_1:86655166-86655185 Msa1222400:CDS 25.0%
! AAAAGTCAACATAGATATCA+AGG + chr8_1:86655280-86655299 Msa1222400:CDS 25.0%
!! GATATGTCAAACAAGAATTT+TGG - chr8_1:86655416-86655435 None:intergenic 25.0%
!!! ATTTTTTTCTTCTTCATAGG+AGG + chr8_1:86655494-86655513 Msa1222400:three_prime_UTR 25.0%
!!! TTTATTGGTAATGTTAAGGA+TGG + chr8_1:86655737-86655756 Msa1222400:three_prime_UTR 25.0%
! CCATCAAAATTTAGAGTCAA+CGG - chr8_1:86650811-86650830 None:intergenic 30.0%
!! GACTCTAAATTTTGATGGTT+CGG + chr8_1:86650813-86650832 Msa1222400:exon 30.0%
!!! AATTTTGATGGTTCGGTTTA+TGG + chr8_1:86650820-86650839 Msa1222400:exon 30.0%
!!! ATTTTGATGGTTCGGTTTAT+GGG + chr8_1:86650821-86650840 Msa1222400:exon 30.0%
!!! TATGGTTTTGCGTTTTGTTT+AGG + chr8_1:86651245-86651264 Msa1222400:intron 30.0%
! CCAATTTTTAAATGTGTAGC+TGG - chr8_1:86651465-86651484 None:intergenic 30.0%
CCAGCTACACATTTAAAAAT+TGG + chr8_1:86651462-86651481 Msa1222400:CDS 30.0%
! TTTAAAAATTGGTTCATGGG+AGG + chr8_1:86651473-86651492 Msa1222400:CDS 30.0%
TGAATGATATTGTGAATTGC+AGG + chr8_1:86651825-86651844 Msa1222400:intron 30.0%
TTAGTCTCCCTAAAAAAAAG+AGG - chr8_1:86651862-86651881 None:intergenic 30.0%
!! ATAACTTGTTGAAATCGTTG+AGG + chr8_1:86652157-86652176 Msa1222400:intron 30.0%
GAAATGCTTGTGTACAAAAA+AGG - chr8_1:86652235-86652254 None:intergenic 30.0%
TTGTAGTAGGTAATATGTAC+AGG - chr8_1:86652331-86652350 None:intergenic 30.0%
TACATATTACCTACTACAAC+AGG + chr8_1:86652332-86652351 Msa1222400:intron 30.0%
AATTACAAAAGGTTAGAGCA+AGG + chr8_1:86652368-86652387 Msa1222400:intron 30.0%
TCTACATAGATCTATGATGT+TGG + chr8_1:86652507-86652526 Msa1222400:intron 30.0%
TTATGTTGTTAATTCTCCCT+GGG - chr8_1:86652781-86652800 None:intergenic 30.0%
TTTATGTTGTTAATTCTCCC+TGG - chr8_1:86652782-86652801 None:intergenic 30.0%
AACAACAACTAAGTGACATT+GGG - chr8_1:86652812-86652831 None:intergenic 30.0%
TAACAACAACTAAGTGACAT+TGG - chr8_1:86652813-86652832 None:intergenic 30.0%
AGATTTGATAAGCAAGCTTA+TGG - chr8_1:86652844-86652863 None:intergenic 30.0%
!!! ATTTTTGAGGTCCATATTAG+GGG + chr8_1:86653024-86653043 Msa1222400:intron 30.0%
CTACACTAAACAAATGGAAT+CGG - chr8_1:86653159-86653178 None:intergenic 30.0%
GTTTCTCTACACTAAACAAA+TGG - chr8_1:86653165-86653184 None:intergenic 30.0%
TTGCTCTTCCTAGAAAAAAT+CGG + chr8_1:86653203-86653222 Msa1222400:intron 30.0%
!! ATTTTGACCCGATTTTTTCT+AGG - chr8_1:86653214-86653233 None:intergenic 30.0%
GGAAGAAGCAAAAAAAAACA+TGG - chr8_1:86653330-86653349 None:intergenic 30.0%
!! CAGCTATTTTACTTCAAATC+AGG - chr8_1:86653352-86653371 None:intergenic 30.0%
! ATTTGAAGTAAAATAGCTGC+TGG + chr8_1:86653353-86653372 Msa1222400:intron 30.0%
CACATGATTATTTGCGTATT+TGG + chr8_1:86653488-86653507 Msa1222400:intron 30.0%
!!! GTTTGTTTGCTTTTGAGTTA+GGG - chr8_1:86653560-86653579 None:intergenic 30.0%
!!! AGTTTGTTTGCTTTTGAGTT+AGG - chr8_1:86653561-86653580 None:intergenic 30.0%
TAATGATAAAACCAACAGCA+GGG - chr8_1:86653822-86653841 None:intergenic 30.0%
TTAATGATAAAACCAACAGC+AGG - chr8_1:86653823-86653842 None:intergenic 30.0%
! AATTGATAATCACAATACGC+AGG - chr8_1:86653850-86653869 None:intergenic 30.0%
! CACAATCTTTTAGATTGTGA+GGG - chr8_1:86654123-86654142 None:intergenic 30.0%
! TCACAATCTTTTAGATTGTG+AGG - chr8_1:86654124-86654143 None:intergenic 30.0%
! AAAGATTGTGATTTGCATCA+AGG + chr8_1:86654133-86654152 Msa1222400:CDS 30.0%
AGTTCTTATATTACCTGAAC+TGG - chr8_1:86654296-86654315 None:intergenic 30.0%
GTTCAGGTAATATAAGAACT+TGG + chr8_1:86654296-86654315 Msa1222400:intron 30.0%
AACATTTCTTCTTTGCTTGT+TGG + chr8_1:86654405-86654424 Msa1222400:intron 30.0%
AACTTATCAATGGAATGATG+AGG + chr8_1:86654440-86654459 Msa1222400:intron 30.0%
TTAAACATGATGATCCTAAG+AGG - chr8_1:86654520-86654539 None:intergenic 30.0%
!!! ATGTTGACTTTTGCATCATT+AGG - chr8_1:86655272-86655291 None:intergenic 30.0%
!! ACATTCTGAAATTCCCAAAT+CGG - chr8_1:86655451-86655470 None:intergenic 30.0%
!! ACCTAGAAATGTTTTTACAC+GGG - chr8_1:86655563-86655582 None:intergenic 30.0%
!! CACCTAGAAATGTTTTTACA+CGG - chr8_1:86655564-86655583 None:intergenic 30.0%
GGTAAACATAGTTTACTTGA+AGG - chr8_1:86655642-86655661 None:intergenic 30.0%
TGTTTACCTTGTTAAACATC+CGG + chr8_1:86655654-86655673 Msa1222400:three_prime_UTR 30.0%
! ATACTCGTATTGCTTTGTTA+AGG + chr8_1:86655691-86655710 Msa1222400:three_prime_UTR 30.0%
AACAGAATGCAAAACCCTAA+CGG - chr8_1:86650770-86650789 None:intergenic 35.0%
!!! CCGTTGACTCTAAATTTTGA+TGG + chr8_1:86650808-86650827 Msa1222400:exon 35.0%
GTATCAAATCTAACAGCGAA+GGG - chr8_1:86651326-86651345 None:intergenic 35.0%
TGTATCAAATCTAACAGCGA+AGG - chr8_1:86651327-86651346 None:intergenic 35.0%
GACACTTTGTCAAGAGAATT+CGG + chr8_1:86651350-86651369 Msa1222400:CDS 35.0%
! TGCATGTGGTTTTTCGTTTT+GGG + chr8_1:86651510-86651529 Msa1222400:intron 35.0%
GAAATATGAAGGTGACTTAG+TGG + chr8_1:86651594-86651613 Msa1222400:CDS 35.0%
AACACACATGTAATTACGTG+TGG + chr8_1:86651776-86651795 Msa1222400:intron 35.0%
!!! CAGACAGCCTCTTTTTTTTA+GGG + chr8_1:86651852-86651871 Msa1222400:CDS 35.0%
! CAATCAACGACAGATTTTAC+CGG + chr8_1:86651910-86651929 Msa1222400:CDS 35.0%
AAGAATATACCTATGTGTGC+TGG - chr8_1:86651944-86651963 None:intergenic 35.0%
AGCAAACATCCACATATCAA+AGG - chr8_1:86651978-86651997 None:intergenic 35.0%
! TGGTTTGTCATAAACTGTGT+AGG + chr8_1:86652049-86652068 Msa1222400:intron 35.0%
TTTATTGGGAGTCCCTAATA+TGG + chr8_1:86652277-86652296 Msa1222400:intron 35.0%
!!! TGGGTGGACCTTTATTTTTA+GGG - chr8_1:86652304-86652323 None:intergenic 35.0%
!!! ATGGGTGGACCTTTATTTTT+AGG - chr8_1:86652305-86652324 None:intergenic 35.0%
TAAAAATAAAGGTCCACCCA+TGG + chr8_1:86652304-86652323 Msa1222400:intron 35.0%
TTAAGGTAACCTGTTGTAGT+AGG - chr8_1:86652344-86652363 None:intergenic 35.0%
! CAGTTTGGTAGTTTCATAGA+AGG + chr8_1:86652402-86652421 Msa1222400:intron 35.0%
GAATTGAAAGAGAGTTGGAA+AGG + chr8_1:86652441-86652460 Msa1222400:intron 35.0%
GAGAGTTGGAAAGGAATATT+TGG + chr8_1:86652450-86652469 Msa1222400:intron 35.0%
GTTGGAAAGGAATATTTGGT+TGG + chr8_1:86652454-86652473 Msa1222400:intron 35.0%
ACACAAGGCAGGATAATAAA+AGG - chr8_1:86652672-86652691 None:intergenic 35.0%
!!! GGTTTTTGTTTCTGTTATGC+AGG - chr8_1:86652703-86652722 None:intergenic 35.0%
ATGTAAAAAAAGGATTCCCC+AGG + chr8_1:86652761-86652780 Msa1222400:intron 35.0%
TGTAAAAAAAGGATTCCCCA+GGG + chr8_1:86652762-86652781 Msa1222400:intron 35.0%
TATGTTGTTAATTCTCCCTG+GGG - chr8_1:86652780-86652799 None:intergenic 35.0%
CTATAGCAGGTAATATGCAT+GGG + chr8_1:86652984-86653003 Msa1222400:intron 35.0%
CAAAAATAAAGGTCCACCAA+TGG - chr8_1:86653011-86653030 None:intergenic 35.0%
!!! TTGGTGGACCTTTATTTTTG+AGG + chr8_1:86653011-86653030 Msa1222400:intron 35.0%
TAAACAAGAGCCAAACAAGA+TGG - chr8_1:86653123-86653142 None:intergenic 35.0%
TGCTCTTCCTAGAAAAAATC+GGG + chr8_1:86653204-86653223 Msa1222400:intron 35.0%
! CATGTTTTGCAATGTGAACA+AGG + chr8_1:86653974-86653993 Msa1222400:CDS 35.0%
! GTTGGCTTAAGAACTTAAGA+CGG - chr8_1:86654042-86654061 None:intergenic 35.0%
AGTGAATCAACCATTATCTC+TGG - chr8_1:86654067-86654086 None:intergenic 35.0%
! CTATCTAAGGTAATAGCAGA+AGG - chr8_1:86654250-86654269 None:intergenic 35.0%
TCTTATATTACCTGAACTGG+AGG - chr8_1:86654293-86654312 None:intergenic 35.0%
TTGTTATAGATCTGCCTCTT+AGG + chr8_1:86654503-86654522 Msa1222400:intron 35.0%
! TAATTCCGAAGCTGATTCAA+AGG + chr8_1:86654935-86654954 Msa1222400:CDS 35.0%
! AATTCCGAAGCTGATTCAAA+GGG + chr8_1:86654936-86654955 Msa1222400:CDS 35.0%
AAATCGCTCATTGACATAGA+AGG - chr8_1:86655002-86655021 None:intergenic 35.0%
! ATGTCAATGAGCGATTTTCT+TGG + chr8_1:86655005-86655024 Msa1222400:CDS 35.0%
GCATCACATTTCCAAAGAAA+TGG + chr8_1:86655037-86655056 Msa1222400:CDS 35.0%
ATTTCCAAAGAAATGGCTTC+AGG + chr8_1:86655044-86655063 Msa1222400:CDS 35.0%
TTTCCAAAGAAATGGCTTCA+GGG + chr8_1:86655045-86655064 Msa1222400:CDS 35.0%
AATCTTTCAGCAGAAAAGGA+AGG - chr8_1:86655074-86655093 None:intergenic 35.0%
! TTCCTTTTCTGCTGAAAGAT+TGG + chr8_1:86655073-86655092 Msa1222400:CDS 35.0%
! ATTGGAGTACCAAGAAATGA+TGG + chr8_1:86655091-86655110 Msa1222400:CDS 35.0%
TAATGCCATCCATCATTTCT+TGG - chr8_1:86655103-86655122 None:intergenic 35.0%
!! CATTCTGAAATTCCCAAATC+GGG - chr8_1:86655450-86655469 None:intergenic 35.0%
ACTATCAACGAGACTCAAAA+TGG - chr8_1:86655613-86655632 None:intergenic 35.0%
GTTTACCTTGTTAAACATCC+GGG + chr8_1:86655655-86655674 Msa1222400:three_prime_UTR 35.0%
! TCGTATTGCTTTGTTAAGGA+TGG + chr8_1:86655695-86655714 Msa1222400:three_prime_UTR 35.0%
GGACGTAAAGAGAAGAAAGA+GGG - chr8_1:86650743-86650762 None:intergenic 40.0%
AGGACGTAAAGAGAAGAAAG+AGG - chr8_1:86650744-86650763 None:intergenic 40.0%
! TCTTTACGTCCTTTTCCGTT+AGG + chr8_1:86650752-86650771 Msa1222400:intron 40.0%
! CTTTACGTCCTTTTCCGTTA+GGG + chr8_1:86650753-86650772 Msa1222400:intron 40.0%
ATGCAAAACCCTAACGGAAA+AGG - chr8_1:86650764-86650783 None:intergenic 40.0%
TAAGAATCCCCGTTCTCAAT+GGG + chr8_1:86650847-86650866 Msa1222400:CDS 40.0%
AAGACGATTCCCATTGAGAA+CGG - chr8_1:86650859-86650878 None:intergenic 40.0%
GATCTCAAATTTGGGGGAAA+TGG - chr8_1:86650894-86650913 None:intergenic 40.0%
ATCCTCGATCTCAAATTTGG+GGG - chr8_1:86650900-86650919 None:intergenic 40.0%
GATCCTCGATCTCAAATTTG+GGG - chr8_1:86650901-86650920 None:intergenic 40.0%
GGATCCTCGATCTCAAATTT+GGG - chr8_1:86650902-86650921 None:intergenic 40.0%
GGAGCATGTTGATCTTGAAT+GGG - chr8_1:86650923-86650942 None:intergenic 40.0%
! AGGAGCATGTTGATCTTGAA+TGG - chr8_1:86650924-86650943 None:intergenic 40.0%
TCCTGAGACTTAAACCCAAA+GGG - chr8_1:86651299-86651318 None:intergenic 40.0%
TTCCTGAGACTTAAACCCAA+AGG - chr8_1:86651300-86651319 None:intergenic 40.0%
TGCTTCAGTTGAAAAGCTGA+AGG + chr8_1:86651428-86651447 Msa1222400:CDS 40.0%
! CTGCATGTGGTTTTTCGTTT+TGG + chr8_1:86651509-86651528 Msa1222400:intron 40.0%
! TTGCCAAACAGAAGCTTGTT+TGG + chr8_1:86651629-86651648 Msa1222400:CDS 40.0%
! TGCCAAACAGAAGCTTGTTT+GGG + chr8_1:86651630-86651649 Msa1222400:CDS 40.0%
TTCCCAAACAAGCTTCTGTT+TGG - chr8_1:86651635-86651654 None:intergenic 40.0%
CTTGTTTGGGAAGTTCTTGA+GGG + chr8_1:86651643-86651662 Msa1222400:CDS 40.0%
!! GGCTTTAAGTTGACTGATGT+CGG - chr8_1:86651701-86651720 None:intergenic 40.0%
AAAGCCAATTGTCCTGATGA+TGG + chr8_1:86651715-86651734 Msa1222400:CDS 40.0%
CCTAAAAAAAAGAGGCTGTC+TGG - chr8_1:86651854-86651873 None:intergenic 40.0%
!!! CCAGACAGCCTCTTTTTTTT+AGG + chr8_1:86651851-86651870 Msa1222400:CDS 40.0%
AATGTGTGCTTTCTAGGTTG+AGG - chr8_1:86651886-86651905 None:intergenic 40.0%
! AACCTAGAAAGCACACATTG+TGG + chr8_1:86651887-86651906 Msa1222400:CDS 40.0%
TACAGCTGTCCTTTGATATG+TGG + chr8_1:86651966-86651985 Msa1222400:intron 40.0%
! ACTTGTTGAAATCGTTGAGG+AGG + chr8_1:86652160-86652179 Msa1222400:intron 40.0%
GGTAATATGTACAGGTCCAT+GGG - chr8_1:86652323-86652342 None:intergenic 40.0%
AGGTAATATGTACAGGTCCA+TGG - chr8_1:86652324-86652343 None:intergenic 40.0%
! GGTAGTTTCATAGAAGGCAT+TGG + chr8_1:86652408-86652427 Msa1222400:intron 40.0%
!! GTTTCATAGAAGGCATTGGA+AGG + chr8_1:86652412-86652431 Msa1222400:intron 40.0%
GGAAGGAATTGAAAGAGAGT+TGG + chr8_1:86652436-86652455 Msa1222400:intron 40.0%
TTCTCTGGATGTTGAGAACT+TGG + chr8_1:86652573-86652592 Msa1222400:intron 40.0%
ATGCAGGAAGAGATTACACA+AGG - chr8_1:86652687-86652706 None:intergenic 40.0%
CTGCAAATCAATGTCATGCT+AGG + chr8_1:86652876-86652895 Msa1222400:intron 40.0%
TGCATATTACCTGCTATAGC+AGG - chr8_1:86652983-86653002 None:intergenic 40.0%
GCTATAGCAGGTAATATGCA+TGG + chr8_1:86652983-86653002 Msa1222400:intron 40.0%
AAATAAGGGAGCCCCTAATA+TGG - chr8_1:86653038-86653057 None:intergenic 40.0%
! TAGGGGCTCCCTTATTTATT+TGG + chr8_1:86653041-86653060 Msa1222400:intron 40.0%
ACGTCCTATTCCATCTTGTT+TGG + chr8_1:86653110-86653129 Msa1222400:intron 40.0%
AGAGCCAAACAAGATGGAAT+AGG - chr8_1:86653117-86653136 None:intergenic 40.0%
ATGTCCTGTTCCATCTTGTT+TGG + chr8_1:86653916-86653935 Msa1222400:intron 40.0%
! TGTCCTGTTCCATCTTGTTT+GGG + chr8_1:86653917-86653936 Msa1222400:intron 40.0%
! TTGTGATTTGCATCAAGGCA+AGG + chr8_1:86654138-86654157 Msa1222400:CDS 40.0%
! TGTGATTTGCATCAAGGCAA+GGG + chr8_1:86654139-86654158 Msa1222400:CDS 40.0%
ATATTACCTGAACTGGAGGA+AGG - chr8_1:86654289-86654308 None:intergenic 40.0%
TGATCCCTTTGAATCAGCTT+CGG - chr8_1:86654943-86654962 None:intergenic 40.0%
ATTCAAAGGGATCAAGACAC+TGG + chr8_1:86654949-86654968 Msa1222400:CDS 40.0%
TTCAAAGGGATCAAGACACT+GGG + chr8_1:86654950-86654969 Msa1222400:CDS 40.0%
TGGGATCAAATAAAACTGCC+TGG + chr8_1:86654969-86654988 Msa1222400:CDS 40.0%
GGGATCAAATAAAACTGCCT+GGG + chr8_1:86654970-86654989 Msa1222400:CDS 40.0%
TGGAAATGTGATGCTCAATG+TGG - chr8_1:86655031-86655050 None:intergenic 40.0%
TTCCAAAGAAATGGCTTCAG+GGG + chr8_1:86655046-86655065 Msa1222400:CDS 40.0%
CTCCAATCTTTCAGCAGAAA+AGG - chr8_1:86655078-86655097 None:intergenic 40.0%
! GAGTACCAAGAAATGATGGA+TGG + chr8_1:86655095-86655114 Msa1222400:CDS 40.0%
ACATCTGCTTAACGACAATC+AGG + chr8_1:86655127-86655146 Msa1222400:CDS 40.0%
AGATATCAAGGCTACTGAAG+AGG + chr8_1:86655292-86655311 Msa1222400:CDS 40.0%
AGATGTTTATGGTGGCAATC+CGG + chr8_1:86655322-86655341 Msa1222400:CDS 40.0%
ATGTCGAGGAAAGACTCATT+TGG + chr8_1:86655353-86655372 Msa1222400:CDS 40.0%
TTTGGAAGAGATGCAATTCG+AGG - chr8_1:86655398-86655417 None:intergenic 40.0%
! TCAGAAGATTAGTCCCGATT+TGG + chr8_1:86655434-86655453 Msa1222400:exon 40.0%
! CAGAAGATTAGTCCCGATTT+GGG + chr8_1:86655435-86655454 Msa1222400:exon 40.0%
GCCCGTGTAAAAACATTTCT+AGG + chr8_1:86655559-86655578 Msa1222400:three_prime_UTR 40.0%
ACATACCCGGATGTTTAACA+AGG - chr8_1:86655663-86655682 None:intergenic 40.0%
TTGTTAAACATCCGGGTATG+TGG + chr8_1:86655662-86655681 Msa1222400:three_prime_UTR 40.0%
! AGTATCGAAATCCACATACC+CGG - chr8_1:86655676-86655695 None:intergenic 40.0%
AAAGAGAAGAAAGAGGGCGA+AGG - chr8_1:86650737-86650756 None:intergenic 45.0%
GTCAACGGAGAAGAAATCGA+AGG - chr8_1:86650796-86650815 None:intergenic 45.0%
CTAAGAATCCCCGTTCTCAA+TGG + chr8_1:86650846-86650865 Msa1222400:CDS 45.0%
AGACGATTCCCATTGAGAAC+GGG - chr8_1:86650858-86650877 None:intergenic 45.0%
CTCAAATTTGGGGGAAATGG+AGG - chr8_1:86650891-86650910 None:intergenic 45.0%
! TTCCCCCAAATTTGAGATCG+AGG + chr8_1:86650895-86650914 Msa1222400:CDS 45.0%
GGGATCCTCGATCTCAAATT+TGG - chr8_1:86650903-86650922 None:intergenic 45.0%
! ACTTTGTGACGCTTGTTGAG+AGG - chr8_1:86650944-86650963 None:intergenic 45.0%
ACTTAATGAGCCTAGCCCTT+TGG + chr8_1:86651281-86651300 Msa1222400:CDS 45.0%
CTTAATGAGCCTAGCCCTTT+GGG + chr8_1:86651282-86651301 Msa1222400:CDS 45.0%
AGACTTAAACCCAAAGGGCT+AGG - chr8_1:86651294-86651313 None:intergenic 45.0%
TACATTCGAGACTCTGCATG+TGG + chr8_1:86651496-86651515 Msa1222400:intron 45.0%
GCTTGTTTGGGAAGTTCTTG+AGG + chr8_1:86651642-86651661 Msa1222400:CDS 45.0%
AGGTCCATCATCAGGACAAT+TGG - chr8_1:86651722-86651741 None:intergenic 45.0%
AATGTGCTAGGTCCATCATC+AGG - chr8_1:86651730-86651749 None:intergenic 45.0%
ACCTAGCACATTGACCTTAG+TGG + chr8_1:86651738-86651757 Msa1222400:CDS 45.0%
ACCACTAAGGTCAATGTGCT+AGG - chr8_1:86651742-86651761 None:intergenic 45.0%
TGCCACAATGTGTGCTTTCT+AGG - chr8_1:86651892-86651911 None:intergenic 45.0%
! TCAACGACAGATTTTACCGG+TGG + chr8_1:86651913-86651932 Msa1222400:CDS 45.0%
TTGAAATCGTTGAGGAGGAG+TGG + chr8_1:86652165-86652184 Msa1222400:intron 45.0%
AATATGTACAGGTCCATGGG+TGG - chr8_1:86652320-86652339 None:intergenic 45.0%
AGGTTAGAGCAAGGAATGAG+AGG + chr8_1:86652377-86652396 Msa1222400:intron 45.0%
GGTTAGAGCAAGGAATGAGA+GGG + chr8_1:86652378-86652397 Msa1222400:intron 45.0%
AAGGAATGAGAGGGACAGTT+TGG + chr8_1:86652387-86652406 Msa1222400:intron 45.0%
!! TCATAGAAGGCATTGGAAGG+TGG + chr8_1:86652415-86652434 Msa1222400:intron 45.0%
AGGAAGAGATTACACAAGGC+AGG - chr8_1:86652683-86652702 None:intergenic 45.0%
ATGTCATGCTAGGTAGTGCT+TGG + chr8_1:86652886-86652905 Msa1222400:intron 45.0%
TTGGAGAAGAGTGAAGTGGT+TGG + chr8_1:86652905-86652924 Msa1222400:intron 45.0%
TGGAGAAGAGTGAAGTGGTT+GGG + chr8_1:86652906-86652925 Msa1222400:intron 45.0%
TTAGGGTAACCTGCTATAGC+AGG + chr8_1:86652971-86652990 Msa1222400:intron 45.0%
GGTAATATGCATGGGTCCAT+TGG + chr8_1:86652992-86653011 Msa1222400:intron 45.0%
AATATGCATGGGTCCATTGG+TGG + chr8_1:86652995-86653014 Msa1222400:intron 45.0%
GATACATTCTTCCCTGCTGT+TGG + chr8_1:86653808-86653827 Msa1222400:intron 45.0%
GTTCCCAAACAAGATGGAAC+AGG - chr8_1:86653923-86653942 None:intergenic 45.0%
GATGGAGTTCCCAAACAAGA+TGG - chr8_1:86653929-86653948 None:intergenic 45.0%
ACTTAAGACGGTCGTTACAC+TGG - chr8_1:86654030-86654049 None:intergenic 45.0%
AAGCCAACAGCCAGAGATAA+TGG + chr8_1:86654054-86654073 Msa1222400:intron 45.0%
CAACCATTATCTCTGGCTGT+TGG - chr8_1:86654060-86654079 None:intergenic 45.0%
! TGCCTCTCGTTTTCAGAACA+TGG + chr8_1:86654174-86654193 Msa1222400:CDS 45.0%
! GCCTCTCGTTTTCAGAACAT+GGG + chr8_1:86654175-86654194 Msa1222400:CDS 45.0%
!! TCCCATGTTCTGAAAACGAG+AGG - chr8_1:86654179-86654198 None:intergenic 45.0%
! GGTCGTAAATGATGGAGACA+GGG - chr8_1:86654215-86654234 None:intergenic 45.0%
TGCACAGACAACTTCTACTG+AGG - chr8_1:86654789-86654808 None:intergenic 45.0%
TTGTCTGTGCAGCATCTACA+TGG + chr8_1:86654798-86654817 Msa1222400:intron 45.0%
TACATCGCTTCTGTTGCATG+TGG - chr8_1:86654915-86654934 None:intergenic 45.0%
CGCTCATTGACATAGAAGGA+CGG - chr8_1:86654998-86655017 None:intergenic 45.0%
ATCCCCTGAAGCCATTTCTT+TGG - chr8_1:86655051-86655070 None:intergenic 45.0%
GCCCAATTCACATGACAACA+CGG + chr8_1:86655232-86655251 Msa1222400:CDS 45.0%
CCCGTGTTGTCATGTGAATT+GGG - chr8_1:86655236-86655255 None:intergenic 45.0%
CCCAATTCACATGACAACAC+GGG + chr8_1:86655233-86655252 Msa1222400:CDS 45.0%
GAGGACTCGAGAGATGTTTA+TGG + chr8_1:86655311-86655330 Msa1222400:CDS 45.0%
GACTCGAGAGATGTTTATGG+TGG + chr8_1:86655314-86655333 Msa1222400:CDS 45.0%
!! TCATAGGAGGCACTAGCATT+TGG + chr8_1:86655507-86655526 Msa1222400:three_prime_UTR 45.0%
!!! TTTTTATTTATAGTTTAATA+GGG + chr8_1:86653716-86653735 Msa1222400:intron 5.0%
AGAAAGAGGGCGAAGGAGAA+GGG - chr8_1:86650730-86650749 None:intergenic 50.0%
AAGAAAGAGGGCGAAGGAGA+AGG - chr8_1:86650731-86650750 None:intergenic 50.0%
GACGATTCCCATTGAGAACG+GGG - chr8_1:86650857-86650876 None:intergenic 50.0%
! GCCCTTTGGGTTTAAGTCTC+AGG + chr8_1:86651295-86651314 Msa1222400:CDS 50.0%
! GACAGATTTTACCGGTGGAC+AGG + chr8_1:86651918-86651937 Msa1222400:CDS 50.0%
!! AGAAGGCATTGGAAGGTGGA+AGG + chr8_1:86652419-86652438 Msa1222400:intron 50.0%
GTGCTTGGAGAAGAGTGAAG+TGG + chr8_1:86652901-86652920 Msa1222400:intron 50.0%
TTCTCAATAGCAGCGGATCG+TGG - chr8_1:86654100-86654119 None:intergenic 50.0%
GTGAGGGTTCTCAATAGCAG+CGG - chr8_1:86654107-86654126 None:intergenic 50.0%
TTGCATCAAGGCAAGGGCAA+TGG + chr8_1:86654145-86654164 Msa1222400:CDS 50.0%
GATGGAGACAGGGATGAATG+AGG - chr8_1:86654205-86654224 None:intergenic 50.0%
! CGGTCGTAAATGATGGAGAC+AGG - chr8_1:86654216-86654235 None:intergenic 50.0%
CTGTGCTCGGTCGTAAATGA+TGG - chr8_1:86654223-86654242 None:intergenic 50.0%
AGCAGAAGGATCACTGTGCT+CGG - chr8_1:86654236-86654255 None:intergenic 50.0%
TTCGCAGGGCACACTATCTA+AGG - chr8_1:86654263-86654282 None:intergenic 50.0%
! ATGTGAATTGGGCACTGCTG+GGG - chr8_1:86655225-86655244 None:intergenic 50.0%
! CATGTGAATTGGGCACTGCT+GGG - chr8_1:86655226-86655245 None:intergenic 50.0%
! TCATGTGAATTGGGCACTGC+TGG - chr8_1:86655227-86655246 None:intergenic 50.0%
GCCCGTGTTGTCATGTGAAT+TGG - chr8_1:86655237-86655256 None:intergenic 50.0%
GACAACACGGGCTCTATTGA+AGG + chr8_1:86655245-86655264 Msa1222400:CDS 50.0%
ATCGTTGAGGAGGAGTGGTC+AGG + chr8_1:86652170-86652189 Msa1222400:intron 55.0%
! GAAGCACCTTCCTCCAGTTC+AGG + chr8_1:86654280-86654299 Msa1222400:CDS 55.0%
! TGTGAATTGGGCACTGCTGG+GGG - chr8_1:86655224-86655243 None:intergenic 55.0%
GAGTCTTTCCTCGACATGCC+TGG - chr8_1:86655350-86655369 None:intergenic 55.0%
! ATGTGTGCTGGCCTGTCCAC+CGG - chr8_1:86651932-86651951 None:intergenic 60.0%
GTGGACAGGCCAGCACACAT+AGG + chr8_1:86651932-86651951 Msa1222400:CDS 60.0%
!! CTGGAGGAAGGTGCTTCGCA+GGG - chr8_1:86654277-86654296 None:intergenic 60.0%
!! ACTGGAGGAAGGTGCTTCGC+AGG - chr8_1:86654278-86654297 None:intergenic 60.0%
GACATAGAAGGACGGAGCCC+AGG - chr8_1:86654990-86655009 None:intergenic 60.0%
TATGGTGGCAATCCGGCACC+AGG + chr8_1:86655329-86655348 Msa1222400:CDS 60.0%
TTCCTCGACATGCCTGGTGC+CGG - chr8_1:86655344-86655363 None:intergenic 60.0%
ATCCGGCACCAGGCATGTCG+AGG + chr8_1:86655339-86655358 Msa1222400:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 86650714 86655760 86650714 ID=Msa1222400;Name=Msa1222400
chr8_1 mRNA 86650714 86655760 86650714 ID=Msa1222400-mRNA-1;Parent=Msa1222400;Name=Msa1222400-mRNA-1;_AED=0.11;_eAED=0.11;_QI=93|0.85|0.75|1|0.71|0.5|8|315|495
chr8_1 exon 86650714 86650743 86650714 ID=Msa1222400-mRNA-1:exon:31168;Parent=Msa1222400-mRNA-1
chr8_1 exon 86650764 86650961 86650764 ID=Msa1222400-mRNA-1:exon:31169;Parent=Msa1222400-mRNA-1
chr8_1 exon 86651267 86651494 86651267 ID=Msa1222400-mRNA-1:exon:31170;Parent=Msa1222400-mRNA-1
chr8_1 exon 86651586 86651759 86651586 ID=Msa1222400-mRNA-1:exon:31171;Parent=Msa1222400-mRNA-1
chr8_1 exon 86651847 86651953 86651847 ID=Msa1222400-mRNA-1:exon:31172;Parent=Msa1222400-mRNA-1
chr8_1 exon 86653970 86654047 86653970 ID=Msa1222400-mRNA-1:exon:31173;Parent=Msa1222400-mRNA-1
chr8_1 exon 86654057 86654301 86654057 ID=Msa1222400-mRNA-1:exon:31174;Parent=Msa1222400-mRNA-1
chr8_1 exon 86654925 86655760 86654925 ID=Msa1222400-mRNA-1:exon:31175;Parent=Msa1222400-mRNA-1
chr8_1 five_prime_UTR 86650714 86650743 86650714 ID=Msa1222400-mRNA-1:five_prime_utr;Parent=Msa1222400-mRNA-1
chr8_1 five_prime_UTR 86650764 86650826 86650764 ID=Msa1222400-mRNA-1:five_prime_utr;Parent=Msa1222400-mRNA-1
chr8_1 CDS 86650827 86650961 86650827 ID=Msa1222400-mRNA-1:cds;Parent=Msa1222400-mRNA-1
chr8_1 CDS 86651267 86651494 86651267 ID=Msa1222400-mRNA-1:cds;Parent=Msa1222400-mRNA-1
chr8_1 CDS 86651586 86651759 86651586 ID=Msa1222400-mRNA-1:cds;Parent=Msa1222400-mRNA-1
chr8_1 CDS 86651847 86651953 86651847 ID=Msa1222400-mRNA-1:cds;Parent=Msa1222400-mRNA-1
chr8_1 CDS 86653970 86654047 86653970 ID=Msa1222400-mRNA-1:cds;Parent=Msa1222400-mRNA-1
chr8_1 CDS 86654057 86654301 86654057 ID=Msa1222400-mRNA-1:cds;Parent=Msa1222400-mRNA-1
chr8_1 CDS 86654925 86655445 86654925 ID=Msa1222400-mRNA-1:cds;Parent=Msa1222400-mRNA-1
chr8_1 three_prime_UTR 86655446 86655760 86655446 ID=Msa1222400-mRNA-1:three_prime_utr;Parent=Msa1222400-mRNA-1
Gene Sequence

>Msa1222400

ATGGTTCGGTTTATGGGTTCTAAGAATCCCCGTTCTCAATGGGAATCGTCTTCTGCTTCATCCTCCATTTCCCCCAAATTTGAGATCGAGGATCCCATTCAAGATCAACATGCTCCTCTCAACAAGCGTCACAAAGCTACAAATGATATACTTAATGAGCCTAGCCCTTTGGGTTTAAGTCTCAGGAAGAGCCCTTCGCTGTTAGATTTGATACAAATGACACTTTGTCAAGAGAATTCGGTTAATGCAAATACTGCAAATGATAATTTAAACTCTAAAGCAAACAAGGACGCTCGTGCTTCAGTTGAAAAGCTGAAGGCTTCAAATTTCCCAGCTACACATTTAAAAATTGGTTCATGGGAGTATAAATCGAAATATGAAGGTGACTTAGTGGCAAAGTGTTACTTTGCCAAACAGAAGCTTGTTTGGGAAGTTCTTGAGGGTGAGCTGAAAAGTAAAATAGAAATTCAATGGTCCGACATCAGTCAACTTAAAGCCAATTGTCCTGATGATGGACCTAGCACATTGACCTTAGTGGTTGCCAGACAGCCTCTTTTTTTTAGGGAGACTAATCCTCAACCTAGAAAGCACACATTGTGGCAATCAACGACAGATTTTACCGGTGGACAGGCCAGCACACATAGGCAGCATGTTTTGCAATGTGAACAAGGACTGTTGATCAAGCATTATGAAAAGCTTGTCCAGTGTAACGACCGTCTTAACCAACAGCCAGAGATAATGGTTGATTCACTTCATTTTGATCCACGATCCGCTGCTATTGAGAACCCTCACAATCTAAAAGATTGTGATTTGCATCAAGGCAAGGGCAATGGATCAGCTGCCTCTCGTTTTCAGAACATGGGATCTCCTCATTCATCCCTGTCTCCATCATTTACGACCGAGCACAGTGATCCTTCTGCTATTACCTTAGATAGTGTGCCCTGCGAAGCACCTTCCTCCAGTTCAGAAGCGATGTATAATTCCGAAGCTGATTCAAAGGGATCAAGACACTGGGATCAAATAAAACTGCCTGGGCTCCGTCCTTCTATGTCAATGAGCGATTTTCTTGGCCACATTGAGCATCACATTTCCAAAGAAATGGCTTCAGGGGATCCTTCCTTTTCTGCTGAAAGATTGGAGTACCAAGAAATGATGGATGGCATTACACAACATCTGCTTAACGACAATCAGGTTGCAACAGACTCCGATGAAAAATCACTTATGTCAAGGGTCAATTCTCTACGCTGTCTCTTACAAATGGATCCCCCAGCAGTGCCCAATTCACATGACAACACGGGCTCTATTGAAGGACCTAATGATGCAAAAGTCAACATAGATATCAAGGCTACTGAAGAGGACTCGAGAGATGTTTATGGTGGCAATCCGGCACCAGGCATGTCGAGGAAAGACTCATTTGGAGATTTGCTTCTTAGTCTTCCTCGAATTGCATCTCTTCCAAAATTCTTGTTTGACATATCAGAAGATTAG

Protein sequence

>Msa1222400

MVRFMGSKNPRSQWESSSASSSISPKFEIEDPIQDQHAPLNKRHKATNDILNEPSPLGLSLRKSPSLLDLIQMTLCQENSVNANTANDNLNSKANKDARASVEKLKASNFPATHLKIGSWEYKSKYEGDLVAKCYFAKQKLVWEVLEGELKSKIEIQWSDISQLKANCPDDGPSTLTLVVARQPLFFRETNPQPRKHTLWQSTTDFTGGQASTHRQHVLQCEQGLLIKHYEKLVQCNDRLNQQPEIMVDSLHFDPRSAAIENPHNLKDCDLHQGKGNGSAASRFQNMGSPHSSLSPSFTTEHSDPSAITLDSVPCEAPSSSSEAMYNSEADSKGSRHWDQIKLPGLRPSMSMSDFLGHIEHHISKEMASGDPSFSAERLEYQEMMDGITQHLLNDNQVATDSDEKSLMSRVNSLRCLLQMDPPAVPNSHDNTGSIEGPNDAKVNIDIKATEEDSRDVYGGNPAPGMSRKDSFGDLLLSLPRIASLPKFLFDISED*