Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129380 | A0A072VP11 | 89.903 | 515 | 38 | 2 | 1 | 501 | 1 | 515 | 0.0 | 927 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014770 | Msa0129380 | 0.803562 | 3.285002e-49 | -8.615850e-47 |
| Msa0035270 | Msa0129380 | 0.936653 | 1.231261e-97 | -8.615850e-47 |
| Msa0035340 | Msa0129380 | 0.872723 | 2.554241e-67 | -8.615850e-47 |
| Msa0035380 | Msa0129380 | 0.853698 | 2.011332e-61 | -8.615850e-47 |
| Msa0121330 | Msa0129380 | 0.803812 | 2.915819e-49 | -8.615850e-47 |
| Msa0129380 | Msa0176060 | 0.854383 | 1.277148e-61 | -8.615850e-47 |
| Msa0129380 | Msa0747000 | 0.830558 | 2.745138e-55 | -8.615850e-47 |
| Msa0129380 | Msa1217050 | 0.823246 | 1.535760e-53 | -8.615850e-47 |
| Msa0129380 | Msa1262590 | 0.829590 | 4.728146e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129380 | MtrunA17_Chr1g0197601 | 89.903 | 515 | 38 | 2 | 1 | 501 | 1 | 515 | 0.0 | 927 |
| Msa0129380 | MtrunA17_Chr6g0478171 | 49.231 | 65 | 33 | 0 | 21 | 85 | 56 | 120 | 1.19e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129380 | AT3G52170.3 | 53.600 | 125 | 56 | 1 | 2 | 126 | 1 | 123 | 3.83e-30 | 123 |
| Msa0129380 | AT3G52170.4 | 53.600 | 125 | 56 | 1 | 2 | 126 | 1 | 123 | 3.83e-30 | 123 |
| Msa0129380 | AT3G52170.2 | 62.366 | 93 | 35 | 0 | 2 | 94 | 1 | 93 | 5.96e-30 | 123 |
| Msa0129380 | AT3G52170.1 | 62.366 | 93 | 35 | 0 | 2 | 94 | 1 | 93 | 5.96e-30 | 123 |
| Msa0129380 | AT5G58210.1 | 54.717 | 53 | 20 | 1 | 30 | 82 | 48 | 96 | 4.85e-12 | 68.2 |
| Msa0129380 | AT5G58210.4 | 54.717 | 53 | 20 | 1 | 30 | 82 | 48 | 96 | 4.85e-12 | 68.2 |
| Msa0129380 | AT5G58210.2 | 54.717 | 53 | 20 | 1 | 30 | 82 | 48 | 96 | 4.85e-12 | 68.2 |
| Msa0129380 | AT5G58210.3 | 54.717 | 53 | 20 | 1 | 30 | 82 | 48 | 96 | 4.85e-12 | 68.2 |
Find 133 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAGCGAGGGTTTGGATTT+TGG | 0.126338 | 1_3:+59293817 | Msa0129380:five_prime_UTR |
| CGCAGATAATTCTAATTTAC+TGG | 0.215505 | 1_3:+59296297 | Msa0129380:CDS |
| CAGTTGTGTTGATTCTTCTC+TGG | 0.258782 | 1_3:-59296872 | None:intergenic |
| CCTTGTTAGCCAAATCTAAA+TGG | 0.263381 | 1_3:-59295679 | None:intergenic |
| TTCCATTGAGATCTGTTTCT+AGG | 0.264559 | 1_3:+59296155 | Msa0129380:CDS |
| GACAATGGGCATGTCGTAAA+TGG | 0.303801 | 1_3:+59295764 | Msa0129380:CDS |
| CTTCTTTATATCCTTCTCTA+AGG | 0.313422 | 1_3:-59296227 | None:intergenic |
| TCTGGAACTTTCTTGAGTTC+AGG | 0.316178 | 1_3:-59295566 | None:intergenic |
| GTTTCTGATGGGCATTATAC+TGG | 0.323187 | 1_3:+59295833 | Msa0129380:CDS |
| TCCTGCTAAATTCAACTTGC+AGG | 0.334858 | 1_3:+59295448 | Msa0129380:CDS |
| AAAGCCATTGTCAATGCCTT+TGG | 0.335893 | 1_3:+59297097 | Msa0129380:CDS |
| AGATGTTGGCCATTTAGATT+TGG | 0.336361 | 1_3:+59295670 | Msa0129380:CDS |
| CGAGTAGCGTAGCGAGGGTT+TGG | 0.350834 | 1_3:+59293810 | Msa0129380:five_prime_UTR |
| AGCAGTGGGCCATTTGTATC+TGG | 0.366951 | 1_3:-59295584 | None:intergenic |
| ATGATGCATTCTGTTGTAAA+AGG | 0.367939 | 1_3:+59294241 | Msa0129380:CDS |
| AGACACAACAGTTGCTTCAA+TGG | 0.376221 | 1_3:-59295705 | None:intergenic |
| TTCCCTCTTCTTCTTCTTCG+AGG | 0.376601 | 1_3:+59293872 | Msa0129380:five_prime_UTR |
| CAAGGAATCCGTTGAAGCTT+CGG | 0.382813 | 1_3:+59295919 | Msa0129380:CDS |
| ATGCACTGACTTGTTCTTTG+TGG | 0.392523 | 1_3:-59296408 | None:intergenic |
| AGTTGTGTTGATTCTTCTCT+GGG | 0.392668 | 1_3:-59296871 | None:intergenic |
| TTATGTGTAAGAGTAATTGA+TGG | 0.394119 | 1_3:-59295353 | None:intergenic |
| GCTGATAAATATAGGCTTGA+TGG | 0.400710 | 1_3:+59296831 | Msa0129380:CDS |
| TGCACTGACTTGTTCTTTGT+GGG | 0.406260 | 1_3:-59296407 | None:intergenic |
| CCTTGTTTGTCATGTCTACC+TGG | 0.406365 | 1_3:-59295901 | None:intergenic |
| AAGCCATTGTCAATGCCTTT+GGG | 0.408921 | 1_3:+59297098 | Msa0129380:CDS |
| CACTTGCAATTGAACCCAAC+GGG | 0.411311 | 1_3:-59295502 | None:intergenic |
| GGTTTACTTACCTGCATCTC+AGG | 0.415129 | 1_3:-59296058 | None:intergenic |
| CAATAGAGCGAAAAGAGGAT+TGG | 0.415556 | 1_3:-59297074 | None:intergenic |
| CTCAGGTATAGTAGCTTCAA+TGG | 0.415944 | 1_3:-59296041 | None:intergenic |
| GATGCACCGAGAAAATGTTC+AGG | 0.432615 | 1_3:-59295527 | None:intergenic |
| AGGAATAGCAATGGAATAGA+AGG | 0.440749 | 1_3:+59296175 | Msa0129380:CDS |
| TTATACTGAAGCTGAGCATC+AGG | 0.444025 | 1_3:+59295625 | Msa0129380:CDS |
| AGTTTCCACTGTTTGACTCT+TGG | 0.444341 | 1_3:-59295328 | None:intergenic |
| TTATACTGAAACTGAGCATC+AGG | 0.445424 | 1_3:+59295736 | Msa0129380:CDS |
| GAAGCTTCTGTTGTTTCTGA+TGG | 0.445970 | 1_3:+59295821 | Msa0129380:CDS |
| AGCAATGGAATAGAAGGTTC+AGG | 0.448760 | 1_3:+59296181 | Msa0129380:CDS |
| CACTTTCCGTATCATGCCTA+GGG | 0.451455 | 1_3:-59296372 | None:intergenic |
| AGCTTGAGATTGTTGACAAA+GGG | 0.454249 | 1_3:+59295975 | Msa0129380:CDS |
| AATAGAGCGAAAAGAGGATT+GGG | 0.454588 | 1_3:-59297073 | None:intergenic |
| TCCTGCAAGTTGAATTTAGC+AGG | 0.458783 | 1_3:-59295449 | None:intergenic |
| TGAAACATATAACCAAAGTC+AGG | 0.459332 | 1_3:+59296453 | Msa0129380:CDS |
| GCACTTTCCGTATCATGCCT+AGG | 0.462980 | 1_3:-59296373 | None:intergenic |
| TGCATGAAGCTGATAAATAT+AGG | 0.464650 | 1_3:+59296823 | Msa0129380:CDS |
| GTGTGAAATCAGTGTGAAGA+AGG | 0.467565 | 1_3:-59293847 | None:intergenic |
| GAATCAACACAACTGTAGAT+AGG | 0.471897 | 1_3:+59296880 | Msa0129380:CDS |
| GTGGCTCTTTCTACACTGTA+AGG | 0.472014 | 1_3:+59295384 | Msa0129380:CDS |
| AATTCAAGAAAATAGAGTGC+TGG | 0.476605 | 1_3:+59295424 | Msa0129380:CDS |
| CTCGGTGCATCATCAAATGA+AGG | 0.479411 | 1_3:+59295539 | Msa0129380:CDS |
| ATCAGAAACAACAGAAGCTT+CGG | 0.480753 | 1_3:-59295819 | None:intergenic |
| TAGAAGGTTCAGGAGAATTG+AGG | 0.482054 | 1_3:+59296191 | Msa0129380:CDS |
| CCATTTAGATTTGGCTAACA+AGG | 0.487753 | 1_3:+59295679 | Msa0129380:CDS |
| AGCATCAGGTGGTTGACAAT+GGG | 0.489034 | 1_3:+59295750 | Msa0129380:CDS |
| GAGAAATTTGAGAGTCCCCT+TGG | 0.490832 | 1_3:+59296322 | Msa0129380:CDS |
| AGAAGGTTCAGGAGAATTGA+GGG | 0.492321 | 1_3:+59296192 | Msa0129380:CDS |
| GGTTGTGTGGTATGACTATG+AGG | 0.492424 | 1_3:+59297301 | Msa0129380:three_prime_UTR |
| AAGCTTCTGTTGTTTCTGAT+GGG | 0.493641 | 1_3:+59295822 | Msa0129380:CDS |
| AGCTCAAGGTTGTTGACAAA+GGG | 0.499242 | 1_3:+59295861 | Msa0129380:CDS |
| AGAGAAGGATATAAAGAAGT+TGG | 0.501128 | 1_3:+59296231 | Msa0129380:CDS |
| TATAGGCTTGATGGTCAACT+TGG | 0.501804 | 1_3:+59296840 | Msa0129380:CDS |
| ATGTGAAGTTATTCTTCAGC+AGG | 0.504378 | 1_3:-59297210 | None:intergenic |
| ACACTGTAAGGGAGATTGTA+CGG | 0.505294 | 1_3:+59295396 | Msa0129380:CDS |
| TCGGATTCGACGCTCTAAAG+AGG | 0.508308 | 1_3:+59294321 | Msa0129380:CDS |
| TTTGTCAACAACCTTGAGCT+CGG | 0.510556 | 1_3:-59295858 | None:intergenic |
| GACAAAGGGCATGGCATCGA+TGG | 0.513666 | 1_3:+59295989 | Msa0129380:CDS |
| TATATTTATCAGCTTCATGC+AGG | 0.514009 | 1_3:-59296821 | None:intergenic |
| TTCCGTATCATGCCTAGGGT+TGG | 0.517395 | 1_3:-59296368 | None:intergenic |
| ATTCAAGAAAATAGAGTGCT+GGG | 0.524858 | 1_3:+59295425 | Msa0129380:CDS |
| AGCTACTATACCTGAGATGC+AGG | 0.526391 | 1_3:+59296048 | Msa0129380:CDS |
| AAGAAAGTTCCAGATACAAA+TGG | 0.528635 | 1_3:+59295575 | Msa0129380:CDS |
| TTCCTAGAAACAGATCTCAA+TGG | 0.528728 | 1_3:-59296157 | None:intergenic |
| CTCCAACCCTAGGCATGATA+CGG | 0.531026 | 1_3:+59296366 | Msa0129380:CDS |
| AGAAACAACCGAAGCTTCAA+CGG | 0.533636 | 1_3:-59295927 | None:intergenic |
| CTGTTGTAAAAGGTGGTTGG+AGG | 0.534279 | 1_3:+59294251 | Msa0129380:CDS |
| GTTTCACTGCAGAGAGTCAT+GGG | 0.534713 | 1_3:+59297018 | Msa0129380:intron |
| AGAGCATTTACTTTAGCCAA+TGG | 0.537834 | 1_3:-59296106 | None:intergenic |
| GGTTTCACTGCAGAGAGTCA+TGG | 0.537898 | 1_3:+59297017 | Msa0129380:intron |
| GAACTTTCTTGAGTTCAGGA+TGG | 0.544040 | 1_3:-59295562 | None:intergenic |
| TCAGGAGAATTGAGGGACTC+TGG | 0.544330 | 1_3:+59296199 | Msa0129380:CDS |
| GGCAGCTACCACATTACCAT+TGG | 0.544842 | 1_3:+59296090 | Msa0129380:CDS |
| CTCTGGTAATTCCTTAGAGA+AGG | 0.546329 | 1_3:+59296216 | Msa0129380:CDS |
| GCTATTATCTACGCTGATTG+TGG | 0.546802 | 1_3:+59297172 | Msa0129380:three_prime_UTR |
| TCAGGTATAGTAGCTTCAAT+GGG | 0.548881 | 1_3:-59296040 | None:intergenic |
| GTGGTAGCTGCCAACTCTGT+GGG | 0.550543 | 1_3:-59296079 | None:intergenic |
| GAGCATCAGGTGGTTGACAA+TGG | 0.551435 | 1_3:+59295749 | Msa0129380:CDS |
| GCCAAGCAAAATGATTCTGA+AGG | 0.552643 | 1_3:+59294289 | Msa0129380:CDS |
| AGCATCAGGTGGTTGACGAT+GGG | 0.552915 | 1_3:+59295639 | Msa0129380:CDS |
| ACGCTCTAAAGAGGAAAGAA+AGG | 0.556254 | 1_3:+59294330 | Msa0129380:CDS |
| TAAAGGAAATCTCCAACCCT+AGG | 0.557511 | 1_3:+59296356 | Msa0129380:CDS |
| TGCTTGGCAAGAGCAAATGT+TGG | 0.557759 | 1_3:-59294274 | None:intergenic |
| GCGCAGCATAGATACTAGCC+AGG | 0.560011 | 1_3:+59295883 | Msa0129380:CDS |
| GAGATTGTTGACAAAGGGCA+TGG | 0.567220 | 1_3:+59295980 | Msa0129380:CDS |
| TGTGGTAGCTGCCAACTCTG+TGG | 0.569908 | 1_3:-59296080 | None:intergenic |
| CACTGTAAGGGAGATTGTAC+GGG | 0.570068 | 1_3:+59295397 | Msa0129380:CDS |
| GCTTTCAATAGAGCGAAAAG+AGG | 0.573031 | 1_3:-59297079 | None:intergenic |
| AGGCTTGATGGTCAACTTGG+TGG | 0.575093 | 1_3:+59296843 | Msa0129380:CDS |
| GAGCATCAGGTGGTTGACGA+TGG | 0.577300 | 1_3:+59295638 | Msa0129380:CDS |
| TTTCCCAAAGGCATTGACAA+TGG | 0.578706 | 1_3:-59297101 | None:intergenic |
| ATGCACCGAGAAAATGTTCA+GGG | 0.579688 | 1_3:-59295526 | None:intergenic |
| GAGCTCAAGGTTGTTGACAA+AGG | 0.582128 | 1_3:+59295860 | Msa0129380:CDS |
| TACTTTAGCCAATGGTAATG+TGG | 0.586681 | 1_3:-59296098 | None:intergenic |
| TTATACTGGAACCGAGCTCA+AGG | 0.590294 | 1_3:+59295847 | Msa0129380:CDS |
| TGTGGTATGACTATGAGGGC+AGG | 0.594180 | 1_3:+59297306 | Msa0129380:three_prime_UTR |
| TGTTGTTTGTCACATCGACA+TGG | 0.596080 | 1_3:-59295790 | None:intergenic |
| CCAGGTAGACATGACAAACA+AGG | 0.596454 | 1_3:+59295901 | Msa0129380:CDS |
| ATACCTCGAAGAAGAAGAAG+AGG | 0.601666 | 1_3:-59293875 | None:intergenic |
| GGTAAGTAAACCCACAGAGT+TGG | 0.602476 | 1_3:+59296069 | Msa0129380:CDS |
| TGCTGAAGAATAACTTCACA+TGG | 0.603325 | 1_3:+59297212 | Msa0129380:three_prime_UTR |
| TAAAGAGGAAAGAAAGGCAA+TGG | 0.604920 | 1_3:+59294336 | Msa0129380:CDS |
| CGCGGTAGATGTGATAAACA+AGG | 0.605122 | 1_3:+59296015 | Msa0129380:CDS |
| CCACTTGCAATTGAACCCAA+CGG | 0.609354 | 1_3:-59295503 | None:intergenic |
| TGGCTCTTTCTACACTGTAA+GGG | 0.609781 | 1_3:+59295385 | Msa0129380:CDS |
| TATTGTCGAGTAGCGTAGCG+AGG | 0.610584 | 1_3:+59293804 | Msa0129380:five_prime_UTR |
| TCTGTTTCTAGGAATAGCAA+TGG | 0.612089 | 1_3:+59296166 | Msa0129380:CDS |
| CCGTTGGGTTCAATTGCAAG+TGG | 0.620104 | 1_3:+59295503 | Msa0129380:CDS |
| CCAAGCAAAATGATTCTGAA+GGG | 0.624278 | 1_3:+59294290 | Msa0129380:CDS |
| ACTCTTACACATAAAGAAGT+CGG | 0.628566 | 1_3:+59295362 | Msa0129380:CDS |
| GAGCTTGAGATTGTTGACAA+AGG | 0.629639 | 1_3:+59295974 | Msa0129380:CDS |
| GATGGGCATGTCATAGATGT+TGG | 0.629886 | 1_3:+59295656 | Msa0129380:CDS |
| ATTGTCGAGTAGCGTAGCGA+GGG | 0.630230 | 1_3:+59293805 | Msa0129380:five_prime_UTR |
| TATCAGAAACAGAAAGCAGT+GGG | 0.630787 | 1_3:-59295598 | None:intergenic |
| GTGGTATGACTATGAGGGCA+GGG | 0.637413 | 1_3:+59297307 | Msa0129380:three_prime_UTR |
| TACTGAAGCTGAGCATCAGG+TGG | 0.639952 | 1_3:+59295628 | Msa0129380:CDS |
| ATTCTGTTGTAAAAGGTGGT+TGG | 0.651800 | 1_3:+59294248 | Msa0129380:CDS |
| ATGCATTCTGTTGTAAAAGG+TGG | 0.653181 | 1_3:+59294244 | Msa0129380:CDS |
| TACTGAAACTGAGCATCAGG+TGG | 0.657285 | 1_3:+59295739 | Msa0129380:CDS |
| GTTGTGTGGTATGACTATGA+GGG | 0.680122 | 1_3:+59297302 | Msa0129380:three_prime_UTR |
| TACCTCGAAGAAGAAGAAGA+GGG | 0.680140 | 1_3:-59293874 | None:intergenic |
| CTTACACATAAAGAAGTCGG+TGG | 0.685561 | 1_3:+59295365 | Msa0129380:CDS |
| AGGTACCAAGAGTCAAACAG+TGG | 0.692269 | 1_3:+59295323 | Msa0129380:intron |
| TTATCAGAAACAGAAAGCAG+TGG | 0.699398 | 1_3:-59295599 | None:intergenic |
| ACGCTACTCGACAATAGTGA+CGG | 0.701418 | 1_3:-59293797 | None:intergenic |
| CAGTAAATTAGAATTATCTG+CGG | 0.719411 | 1_3:-59296296 | None:intergenic |
| GCATGGCATCGATGGCAGCG+CGG | 0.725070 | 1_3:+59295997 | Msa0129380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTTAAAAAGTAAAAG+GGG | - | chr1_3:59294479-59294498 | None:intergenic | 10.0% |
| !!! | CATAAATTTTAAAAAGTAAA+AGG | - | chr1_3:59294481-59294500 | None:intergenic | 10.0% |
| !! | TTCTATTATAAATACAAATA+AGG | - | chr1_3:59295113-59295132 | None:intergenic | 10.0% |
| !!! | ATAATCTAAAATTTTAGAAA+GGG | - | chr1_3:59297258-59297277 | None:intergenic | 10.0% |
| !!! | AATAATCTAAAATTTTAGAA+AGG | - | chr1_3:59297259-59297278 | None:intergenic | 10.0% |
| !! | AATTCAATTAAATAAGTATC+CGG | - | chr1_3:59294095-59294114 | None:intergenic | 15.0% |
| !! | ACAAATTGTTAAAATCAATT+AGG | - | chr1_3:59295209-59295228 | None:intergenic | 15.0% |
| !!! | GATTTTAACAATTTGTTTAA+AGG | + | chr1_3:59295213-59295232 | Msa0129380:intron | 15.0% |
| !! | AAACTAAATTATGGATAAAA+AGG | - | chr1_3:59296483-59296502 | None:intergenic | 15.0% |
| !! | TGAAGTAAAGTTAATTAAAT+TGG | + | chr1_3:59296961-59296980 | Msa0129380:intron | 15.0% |
| !!! | TAATCTAAAATTTTAGAAAG+GGG | - | chr1_3:59297257-59297276 | None:intergenic | 15.0% |
| !! | GCGAAAATAAAAAAGAAAAT+GGG | - | chr1_3:59293935-59293954 | None:intergenic | 20.0% |
| !! | AGCGAAAATAAAAAAGAAAA+TGG | - | chr1_3:59293936-59293955 | None:intergenic | 20.0% |
| !! | AAATGAAAGAGAGAAATTAT+GGG | - | chr1_3:59294034-59294053 | None:intergenic | 20.0% |
| !! | AAAATGAAAGAGAGAAATTA+TGG | - | chr1_3:59294035-59294054 | None:intergenic | 20.0% |
| !! | ATTCAATTAAATAAGTATCC+GGG | - | chr1_3:59294094-59294113 | None:intergenic | 20.0% |
| !!! | AAGAAATTACTTTTGAATGA+AGG | - | chr1_3:59294368-59294387 | None:intergenic | 20.0% |
| !!! | AAACAATGAAAACTTTGTTT+TGG | + | chr1_3:59294585-59294604 | Msa0129380:intron | 20.0% |
| !!! | GCATTTTCAAAATTTATGAA+AGG | + | chr1_3:59294607-59294626 | Msa0129380:intron | 20.0% |
| !! | TACACAAATAATAACACAAT+GGG | - | chr1_3:59295046-59295065 | None:intergenic | 20.0% |
| !!! | GTTTTGTTCTAAAAATTGAT+CGG | - | chr1_3:59295483-59295502 | None:intergenic | 20.0% |
| !!! | AATTACTTTCTTTCTAGTTA+TGG | + | chr1_3:59296730-59296749 | Msa0129380:intron | 20.0% |
| !!! | ATTACTTTCTTTCTAGTTAT+GGG | + | chr1_3:59296731-59296750 | Msa0129380:intron | 20.0% |
| !! | CTTTACTTCATTAAACTAAA+TGG | - | chr1_3:59296951-59296970 | None:intergenic | 20.0% |
| !!! | AATCTAAAATTTTAGAAAGG+GGG | - | chr1_3:59297256-59297275 | None:intergenic | 20.0% |
| !! | TAGGTTAGTTGAATGAAAAT+GGG | - | chr1_3:59294002-59294021 | None:intergenic | 25.0% |
| !! | TTAGGTTAGTTGAATGAAAA+TGG | - | chr1_3:59294003-59294022 | None:intergenic | 25.0% |
| !!! | ATTACTTTTGAATGAAGGAT+TGG | - | chr1_3:59294363-59294382 | None:intergenic | 25.0% |
| ! | TTATATTGCTAACAAACGAA+TGG | + | chr1_3:59294504-59294523 | Msa0129380:intron | 25.0% |
| ! | ATCTATTTCAAGAAAACAGT+CGG | + | chr1_3:59294634-59294653 | Msa0129380:intron | 25.0% |
| ! | CTACACAAATAATAACACAA+TGG | - | chr1_3:59295047-59295066 | None:intergenic | 25.0% |
| ! | TTATGTGTAAGAGTAATTGA+TGG | - | chr1_3:59295356-59295375 | None:intergenic | 25.0% |
| ! | CAGTAAATTAGAATTATCTG+CGG | - | chr1_3:59296299-59296318 | None:intergenic | 25.0% |
| !!! | TTTAACTTTTTGTTTCCAAG+GGG | - | chr1_3:59296340-59296359 | None:intergenic | 25.0% |
| !!! | CTTTAACTTTTTGTTTCCAA+GGG | - | chr1_3:59296341-59296360 | None:intergenic | 25.0% |
| ! | TTATCACCACTAAGAAAATT+TGG | + | chr1_3:59296509-59296528 | Msa0129380:intron | 25.0% |
| ! | TATCACCACTAAGAAAATTT+GGG | + | chr1_3:59296510-59296529 | Msa0129380:intron | 25.0% |
| ! | TAAACGATTCTGTATTGTAT+GGG | - | chr1_3:59296692-59296711 | None:intergenic | 25.0% |
| ! | ATAAACGATTCTGTATTGTA+TGG | - | chr1_3:59296693-59296712 | None:intergenic | 25.0% |
| !!! | TCAATTTCTTTTAACTAGAG+AGG | - | chr1_3:59297335-59297354 | None:intergenic | 25.0% |
| ATGATGCATTCTGTTGTAAA+AGG | + | chr1_3:59294241-59294260 | Msa0129380:CDS | 30.0% | |
| ! | ATTCTGAAGGGAAAAAATCT+CGG | + | chr1_3:59294302-59294321 | Msa0129380:CDS | 30.0% |
| ! | ACTCATGTTTTACTACTTTC+TGG | + | chr1_3:59294397-59294416 | Msa0129380:intron | 30.0% |
| TTCTGATAGATAGAAGAAGA+TGG | + | chr1_3:59294546-59294565 | Msa0129380:intron | 30.0% | |
| TCTGATAGATAGAAGAAGAT+GGG | + | chr1_3:59294547-59294566 | Msa0129380:intron | 30.0% | |
| TGAATTGAAAGAAGCAATAC+CGG | + | chr1_3:59294674-59294693 | Msa0129380:intron | 30.0% | |
| ! | TTTTAGCCTAAGTTTGATAC+AGG | + | chr1_3:59294710-59294729 | Msa0129380:intron | 30.0% |
| !! | CTAATGGATTAAAGAAGTTG+TGG | - | chr1_3:59294959-59294978 | None:intergenic | 30.0% |
| AAATAATAACACAATGGGAG+GGG | - | chr1_3:59295041-59295060 | None:intergenic | 30.0% | |
| CAAATAATAACACAATGGGA+GGG | - | chr1_3:59295042-59295061 | None:intergenic | 30.0% | |
| ACAAATAATAACACAATGGG+AGG | - | chr1_3:59295043-59295062 | None:intergenic | 30.0% | |
| CTATATAGTTACTTGTCTTC+AGG | + | chr1_3:59295303-59295322 | Msa0129380:intron | 30.0% | |
| ACTCTTACACATAAAGAAGT+CGG | + | chr1_3:59295362-59295381 | Msa0129380:CDS | 30.0% | |
| AATTCAAGAAAATAGAGTGC+TGG | + | chr1_3:59295424-59295443 | Msa0129380:CDS | 30.0% | |
| ! | ATTCAAGAAAATAGAGTGCT+GGG | + | chr1_3:59295425-59295444 | Msa0129380:CDS | 30.0% |
| !!! | ATTTTTAGAACAAAACCCGT+TGG | + | chr1_3:59295487-59295506 | Msa0129380:CDS | 30.0% |
| !!! | TTTTTAGAACAAAACCCGTT+GGG | + | chr1_3:59295488-59295507 | Msa0129380:CDS | 30.0% |
| AAGAAAGTTCCAGATACAAA+TGG | + | chr1_3:59295575-59295594 | Msa0129380:CDS | 30.0% | |
| CTTCTTTATATCCTTCTCTA+AGG | - | chr1_3:59296230-59296249 | None:intergenic | 30.0% | |
| AGAGAAGGATATAAAGAAGT+TGG | + | chr1_3:59296231-59296250 | Msa0129380:CDS | 30.0% | |
| CGCAGATAATTCTAATTTAC+TGG | + | chr1_3:59296297-59296316 | Msa0129380:CDS | 30.0% | |
| !! | CCTTTAACTTTTTGTTTCCA+AGG | - | chr1_3:59296342-59296361 | None:intergenic | 30.0% |
| CCTTGGAAACAAAAAGTTAA+AGG | + | chr1_3:59296339-59296358 | Msa0129380:CDS | 30.0% | |
| TGAAACATATAACCAAAGTC+AGG | + | chr1_3:59296453-59296472 | Msa0129380:CDS | 30.0% | |
| ATCACCACTAAGAAAATTTG+GGG | + | chr1_3:59296511-59296530 | Msa0129380:intron | 30.0% | |
| ! | GGAAGTAGTTTATATGCTTT+TGG | + | chr1_3:59296533-59296552 | Msa0129380:intron | 30.0% |
| CAAGAAAACACAACACAAAT+CGG | - | chr1_3:59296607-59296626 | None:intergenic | 30.0% | |
| ATAAATTGATGCAGTTACTG+AGG | - | chr1_3:59296639-59296658 | None:intergenic | 30.0% | |
| TCTGAAAATATTCAGACTCA+TGG | + | chr1_3:59296664-59296683 | Msa0129380:intron | 30.0% | |
| TATATTTATCAGCTTCATGC+AGG | - | chr1_3:59296824-59296843 | None:intergenic | 30.0% | |
| TGCATGAAGCTGATAAATAT+AGG | + | chr1_3:59296823-59296842 | Msa0129380:CDS | 30.0% | |
| ATCCAAGAATTCAGCAAAAA+AGG | + | chr1_3:59297048-59297067 | Msa0129380:CDS | 30.0% | |
| !!! | TTCCTTTTTTGCTGAATTCT+TGG | - | chr1_3:59297053-59297072 | None:intergenic | 30.0% |
| TTCTGACAAAAATTTCCCAA+AGG | - | chr1_3:59297116-59297135 | None:intergenic | 30.0% | |
| !! | AAAATTTTAGAAAGGGGGAA+GGG | - | chr1_3:59297251-59297270 | None:intergenic | 30.0% |
| !! | TAAAATTTTAGAAAGGGGGA+AGG | - | chr1_3:59297252-59297271 | None:intergenic | 30.0% |
| !!! | TGATCTTGTTTTGATTGACT+TGG | + | chr1_3:59297280-59297299 | Msa0129380:three_prime_UTR | 30.0% |
| TAAATAAGTATCCGGGACTT+GGG | - | chr1_3:59294087-59294106 | None:intergenic | 35.0% | |
| TTAAATAAGTATCCGGGACT+TGG | - | chr1_3:59294088-59294107 | None:intergenic | 35.0% | |
| GATATGTTATGTAACCACTC+TGG | + | chr1_3:59294165-59294184 | Msa0129380:intron | 35.0% | |
| ATACAAAGTAACCTGCATAC+AGG | - | chr1_3:59294197-59294216 | None:intergenic | 35.0% | |
| ATGCATTCTGTTGTAAAAGG+TGG | + | chr1_3:59294244-59294263 | Msa0129380:CDS | 35.0% | |
| ATTCTGTTGTAAAAGGTGGT+TGG | + | chr1_3:59294248-59294267 | Msa0129380:CDS | 35.0% | |
| CCAAGCAAAATGATTCTGAA+GGG | + | chr1_3:59294290-59294309 | Msa0129380:CDS | 35.0% | |
| TAAAGAGGAAAGAAAGGCAA+TGG | + | chr1_3:59294336-59294355 | Msa0129380:CDS | 35.0% | |
| ! | TCTGGCGAATGTTTTATGTT+TGG | + | chr1_3:59294415-59294434 | Msa0129380:intron | 35.0% |
| CTAAAACATAGCACATTAGC+CGG | - | chr1_3:59294696-59294715 | None:intergenic | 35.0% | |
| ATCACTCCTGTATCAAACTT+AGG | - | chr1_3:59294719-59294738 | None:intergenic | 35.0% | |
| ! | CATTTTGTATGCGTGTATGT+TGG | + | chr1_3:59294834-59294853 | Msa0129380:intron | 35.0% |
| CAATTAATAACAGCCAGCAT+GGG | - | chr1_3:59294995-59295014 | None:intergenic | 35.0% | |
| TCAATTAATAACAGCCAGCA+TGG | - | chr1_3:59294996-59295015 | None:intergenic | 35.0% | |
| TATCAGAAACAGAAAGCAGT+GGG | - | chr1_3:59295601-59295620 | None:intergenic | 35.0% | |
| TTATCAGAAACAGAAAGCAG+TGG | - | chr1_3:59295602-59295621 | None:intergenic | 35.0% | |
| AGATGTTGGCCATTTAGATT+TGG | + | chr1_3:59295670-59295689 | Msa0129380:CDS | 35.0% | |
| CCTTGTTAGCCAAATCTAAA+TGG | - | chr1_3:59295682-59295701 | None:intergenic | 35.0% | |
| CCATTTAGATTTGGCTAACA+AGG | + | chr1_3:59295679-59295698 | Msa0129380:CDS | 35.0% | |
| TTATACTGAAACTGAGCATC+AGG | + | chr1_3:59295736-59295755 | Msa0129380:CDS | 35.0% | |
| ATCAGAAACAACAGAAGCTT+CGG | - | chr1_3:59295822-59295841 | None:intergenic | 35.0% | |
| !! | AAGCTTCTGTTGTTTCTGAT+GGG | + | chr1_3:59295822-59295841 | Msa0129380:CDS | 35.0% |
| AGCTTGAGATTGTTGACAAA+GGG | + | chr1_3:59295975-59295994 | Msa0129380:CDS | 35.0% | |
| TCAGGTATAGTAGCTTCAAT+GGG | - | chr1_3:59296043-59296062 | None:intergenic | 35.0% | |
| ! | TACTTTAGCCAATGGTAATG+TGG | - | chr1_3:59296101-59296120 | None:intergenic | 35.0% |
| ! | AGAGCATTTACTTTAGCCAA+TGG | - | chr1_3:59296109-59296128 | None:intergenic | 35.0% |
| ! | TTCCATTGAGATCTGTTTCT+AGG | + | chr1_3:59296155-59296174 | Msa0129380:CDS | 35.0% |
| TTCCTAGAAACAGATCTCAA+TGG | - | chr1_3:59296160-59296179 | None:intergenic | 35.0% | |
| !! | TCTGTTTCTAGGAATAGCAA+TGG | + | chr1_3:59296166-59296185 | Msa0129380:CDS | 35.0% |
| AGGAATAGCAATGGAATAGA+AGG | + | chr1_3:59296175-59296194 | Msa0129380:CDS | 35.0% | |
| TAAAAAGGCTAACCTGACTT+TGG | - | chr1_3:59296468-59296487 | None:intergenic | 35.0% | |
| TCACCACTAAGAAAATTTGG+GGG | + | chr1_3:59296512-59296531 | Msa0129380:intron | 35.0% | |
| !! | ACTTTCTTTCTAGTTATGGG+AGG | + | chr1_3:59296734-59296753 | Msa0129380:intron | 35.0% |
| GCTGATAAATATAGGCTTGA+TGG | + | chr1_3:59296831-59296850 | Msa0129380:CDS | 35.0% | |
| !! | AGTTGTGTTGATTCTTCTCT+GGG | - | chr1_3:59296874-59296893 | None:intergenic | 35.0% |
| GAATCAACACAACTGTAGAT+AGG | + | chr1_3:59296880-59296899 | Msa0129380:CDS | 35.0% | |
| AGCTAACTTGACCTTTCTAA+TGG | + | chr1_3:59296996-59297015 | Msa0129380:intron | 35.0% | |
| AATAGAGCGAAAAGAGGATT+GGG | - | chr1_3:59297076-59297095 | None:intergenic | 35.0% | |
| ATGTGAAGTTATTCTTCAGC+AGG | - | chr1_3:59297213-59297232 | None:intergenic | 35.0% | |
| TGCTGAAGAATAACTTCACA+TGG | + | chr1_3:59297212-59297231 | Msa0129380:three_prime_UTR | 35.0% | |
| !! | AAATTTTAGAAAGGGGGAAG+GGG | - | chr1_3:59297250-59297269 | None:intergenic | 35.0% |
| !!! | TTTTGATTGACTTGGTTGTG+TGG | + | chr1_3:59297288-59297307 | Msa0129380:three_prime_UTR | 35.0% |
| GTGTGAAATCAGTGTGAAGA+AGG | - | chr1_3:59293850-59293869 | None:intergenic | 40.0% | |
| TACCTCGAAGAAGAAGAAGA+GGG | - | chr1_3:59293877-59293896 | None:intergenic | 40.0% | |
| ATACCTCGAAGAAGAAGAAG+AGG | - | chr1_3:59293878-59293897 | None:intergenic | 40.0% | |
| TCTTCTTCTTCTTCGAGGTA+TGG | + | chr1_3:59293877-59293896 | Msa0129380:intron | 40.0% | |
| AAATTATGGGCGACAGACTT+AGG | - | chr1_3:59294021-59294040 | None:intergenic | 40.0% | |
| GCCAAGCAAAATGATTCTGA+AGG | + | chr1_3:59294289-59294308 | Msa0129380:CDS | 40.0% | |
| ! | CCCTTCAGAATCATTTTGCT+TGG | - | chr1_3:59294293-59294312 | None:intergenic | 40.0% |
| !! | ACGCTCTAAAGAGGAAAGAA+AGG | + | chr1_3:59294330-59294349 | Msa0129380:CDS | 40.0% |
| GATAGATAGAAGAAGATGGG+AGG | + | chr1_3:59294550-59294569 | Msa0129380:intron | 40.0% | |
| AATGTCCAAGGTTCAAGTCT+GGG | - | chr1_3:59294931-59294950 | None:intergenic | 40.0% | |
| AAATGTCCAAGGTTCAAGTC+TGG | - | chr1_3:59294932-59294951 | None:intergenic | 40.0% | |
| GTTGTGGAGTTAAATGTCCA+AGG | - | chr1_3:59294943-59294962 | None:intergenic | 40.0% | |
| AGAACGTAGATCTGTGTGAA+TGG | + | chr1_3:59295067-59295086 | Msa0129380:intron | 40.0% | |
| AGTTTCCACTGTTTGACTCT+TGG | - | chr1_3:59295331-59295350 | None:intergenic | 40.0% | |
| CTTACACATAAAGAAGTCGG+TGG | + | chr1_3:59295365-59295384 | Msa0129380:CDS | 40.0% | |
| TGGCTCTTTCTACACTGTAA+GGG | + | chr1_3:59295385-59295404 | Msa0129380:CDS | 40.0% | |
| ACACTGTAAGGGAGATTGTA+CGG | + | chr1_3:59295396-59295415 | Msa0129380:CDS | 40.0% | |
| TCCTGCTAAATTCAACTTGC+AGG | + | chr1_3:59295448-59295467 | Msa0129380:CDS | 40.0% | |
| ! | TCCTGCAAGTTGAATTTAGC+AGG | - | chr1_3:59295452-59295471 | None:intergenic | 40.0% |
| ATGCACCGAGAAAATGTTCA+GGG | - | chr1_3:59295529-59295548 | None:intergenic | 40.0% | |
| GAACTTTCTTGAGTTCAGGA+TGG | - | chr1_3:59295565-59295584 | None:intergenic | 40.0% | |
| ! | TCTGGAACTTTCTTGAGTTC+AGG | - | chr1_3:59295569-59295588 | None:intergenic | 40.0% |
| TTATACTGAAGCTGAGCATC+AGG | + | chr1_3:59295625-59295644 | Msa0129380:CDS | 40.0% | |
| AGACACAACAGTTGCTTCAA+TGG | - | chr1_3:59295708-59295727 | None:intergenic | 40.0% | |
| ! | TGTTGTTTGTCACATCGACA+TGG | - | chr1_3:59295793-59295812 | None:intergenic | 40.0% |
| !! | GAAGCTTCTGTTGTTTCTGA+TGG | + | chr1_3:59295821-59295840 | Msa0129380:CDS | 40.0% |
| ! | GTTTCTGATGGGCATTATAC+TGG | + | chr1_3:59295833-59295852 | Msa0129380:CDS | 40.0% |
| TTTGTCAACAACCTTGAGCT+CGG | - | chr1_3:59295861-59295880 | None:intergenic | 40.0% | |
| AGCTCAAGGTTGTTGACAAA+GGG | + | chr1_3:59295861-59295880 | Msa0129380:CDS | 40.0% | |
| AGAAACAACCGAAGCTTCAA+CGG | - | chr1_3:59295930-59295949 | None:intergenic | 40.0% | |
| GAGCTTGAGATTGTTGACAA+AGG | + | chr1_3:59295974-59295993 | Msa0129380:CDS | 40.0% | |
| CTCAGGTATAGTAGCTTCAA+TGG | - | chr1_3:59296044-59296063 | None:intergenic | 40.0% | |
| AGCAATGGAATAGAAGGTTC+AGG | + | chr1_3:59296181-59296200 | Msa0129380:CDS | 40.0% | |
| TAGAAGGTTCAGGAGAATTG+AGG | + | chr1_3:59296191-59296210 | Msa0129380:CDS | 40.0% | |
| AGAAGGTTCAGGAGAATTGA+GGG | + | chr1_3:59296192-59296211 | Msa0129380:CDS | 40.0% | |
| CTCTGGTAATTCCTTAGAGA+AGG | + | chr1_3:59296216-59296235 | Msa0129380:CDS | 40.0% | |
| TAAAGGAAATCTCCAACCCT+AGG | + | chr1_3:59296356-59296375 | Msa0129380:CDS | 40.0% | |
| !! | TGCACTGACTTGTTCTTTGT+GGG | - | chr1_3:59296410-59296429 | None:intergenic | 40.0% |
| !! | ATGCACTGACTTGTTCTTTG+TGG | - | chr1_3:59296411-59296430 | None:intergenic | 40.0% |
| ! | CTTCCCCCAAATTTTCTTAG+TGG | - | chr1_3:59296518-59296537 | None:intergenic | 40.0% |
| ! | TATAGGCTTGATGGTCAACT+TGG | + | chr1_3:59296840-59296859 | Msa0129380:CDS | 40.0% |
| !! | CAGTTGTGTTGATTCTTCTC+TGG | - | chr1_3:59296875-59296894 | None:intergenic | 40.0% |
| CTGCAGTGAAACCATTAGAA+AGG | - | chr1_3:59297010-59297029 | None:intergenic | 40.0% | |
| CAATAGAGCGAAAAGAGGAT+TGG | - | chr1_3:59297077-59297096 | None:intergenic | 40.0% | |
| GCTTTCAATAGAGCGAAAAG+AGG | - | chr1_3:59297082-59297101 | None:intergenic | 40.0% | |
| AAAGCCATTGTCAATGCCTT+TGG | + | chr1_3:59297097-59297116 | Msa0129380:CDS | 40.0% | |
| AAGCCATTGTCAATGCCTTT+GGG | + | chr1_3:59297098-59297117 | Msa0129380:CDS | 40.0% | |
| !! | TTTCCCAAAGGCATTGACAA+TGG | - | chr1_3:59297104-59297123 | None:intergenic | 40.0% |
| ! | GCTATTATCTACGCTGATTG+TGG | + | chr1_3:59297172-59297191 | Msa0129380:three_prime_UTR | 40.0% |
| GTTGTGTGGTATGACTATGA+GGG | + | chr1_3:59297302-59297321 | Msa0129380:three_prime_UTR | 40.0% | |
| ACGCTACTCGACAATAGTGA+CGG | - | chr1_3:59293800-59293819 | None:intergenic | 45.0% | |
| ! | GTAGCGAGGGTTTGGATTTT+GGG | + | chr1_3:59293818-59293837 | Msa0129380:five_prime_UTR | 45.0% |
| ! | TAGCGAGGGTTTGGATTTTG+GGG | + | chr1_3:59293819-59293838 | Msa0129380:five_prime_UTR | 45.0% |
| TTCCCTCTTCTTCTTCTTCG+AGG | + | chr1_3:59293872-59293891 | Msa0129380:five_prime_UTR | 45.0% | |
| ! | GGGTACTGCAGATGAATTTG+AGG | - | chr1_3:59293982-59294001 | None:intergenic | 45.0% |
| CTACAAACTAACCCAAGTCC+CGG | + | chr1_3:59294073-59294092 | Msa0129380:intron | 45.0% | |
| !! | CATACAGGAAGTATCCAGAG+TGG | - | chr1_3:59294182-59294201 | None:intergenic | 45.0% |
| TCTGGATACTTCCTGTATGC+AGG | + | chr1_3:59294183-59294202 | Msa0129380:intron | 45.0% | |
| CTGTTGTAAAAGGTGGTTGG+AGG | + | chr1_3:59294251-59294270 | Msa0129380:CDS | 45.0% | |
| TGCTTGGCAAGAGCAAATGT+TGG | - | chr1_3:59294277-59294296 | None:intergenic | 45.0% | |
| AGATAGAAGAAGATGGGAGG+CGG | + | chr1_3:59294553-59294572 | Msa0129380:intron | 45.0% | |
| TAATAACAGCCAGCATGGGT+GGG | - | chr1_3:59294991-59295010 | None:intergenic | 45.0% | |
| TTAATAACAGCCAGCATGGG+TGG | - | chr1_3:59294992-59295011 | None:intergenic | 45.0% | |
| AGGTACCAAGAGTCAAACAG+TGG | + | chr1_3:59295323-59295342 | Msa0129380:intron | 45.0% | |
| GTGGCTCTTTCTACACTGTA+AGG | + | chr1_3:59295384-59295403 | Msa0129380:CDS | 45.0% | |
| CACTGTAAGGGAGATTGTAC+GGG | + | chr1_3:59295397-59295416 | Msa0129380:CDS | 45.0% | |
| CACTTGCAATTGAACCCAAC+GGG | - | chr1_3:59295505-59295524 | None:intergenic | 45.0% | |
| CCACTTGCAATTGAACCCAA+CGG | - | chr1_3:59295506-59295525 | None:intergenic | 45.0% | |
| ! | AGTGGCCCTGAACATTTTCT+CGG | + | chr1_3:59295521-59295540 | Msa0129380:CDS | 45.0% |
| GATGCACCGAGAAAATGTTC+AGG | - | chr1_3:59295530-59295549 | None:intergenic | 45.0% | |
| ! | CTCGGTGCATCATCAAATGA+AGG | + | chr1_3:59295539-59295558 | Msa0129380:CDS | 45.0% |
| GATGGGCATGTCATAGATGT+TGG | + | chr1_3:59295656-59295675 | Msa0129380:CDS | 45.0% | |
| TACTGAAACTGAGCATCAGG+TGG | + | chr1_3:59295739-59295758 | Msa0129380:CDS | 45.0% | |
| AGCATCAGGTGGTTGACAAT+GGG | + | chr1_3:59295750-59295769 | Msa0129380:CDS | 45.0% | |
| GACAATGGGCATGTCGTAAA+TGG | + | chr1_3:59295764-59295783 | Msa0129380:CDS | 45.0% | |
| TTATACTGGAACCGAGCTCA+AGG | + | chr1_3:59295847-59295866 | Msa0129380:CDS | 45.0% | |
| GAGCTCAAGGTTGTTGACAA+AGG | + | chr1_3:59295860-59295879 | Msa0129380:CDS | 45.0% | |
| ! | CCTTGTTTGTCATGTCTACC+TGG | - | chr1_3:59295904-59295923 | None:intergenic | 45.0% |
| CCAGGTAGACATGACAAACA+AGG | + | chr1_3:59295901-59295920 | Msa0129380:CDS | 45.0% | |
| CAAGGAATCCGTTGAAGCTT+CGG | + | chr1_3:59295919-59295938 | Msa0129380:CDS | 45.0% | |
| GAGATTGTTGACAAAGGGCA+TGG | + | chr1_3:59295980-59295999 | Msa0129380:CDS | 45.0% | |
| CGCGGTAGATGTGATAAACA+AGG | + | chr1_3:59296015-59296034 | Msa0129380:CDS | 45.0% | |
| AGCTACTATACCTGAGATGC+AGG | + | chr1_3:59296048-59296067 | Msa0129380:CDS | 45.0% | |
| GGTTTACTTACCTGCATCTC+AGG | - | chr1_3:59296061-59296080 | None:intergenic | 45.0% | |
| GGTAAGTAAACCCACAGAGT+TGG | + | chr1_3:59296069-59296088 | Msa0129380:CDS | 45.0% | |
| GAGAAATTTGAGAGTCCCCT+TGG | + | chr1_3:59296322-59296341 | Msa0129380:CDS | 45.0% | |
| CACTTTCCGTATCATGCCTA+GGG | - | chr1_3:59296375-59296394 | None:intergenic | 45.0% | |
| GATGCAGTTACTGAGGTATG+AGG | - | chr1_3:59296632-59296651 | None:intergenic | 45.0% | |
| GTTTCACTGCAGAGAGTCAT+GGG | + | chr1_3:59297018-59297037 | Msa0129380:intron | 45.0% | |
| GGTTGTGTGGTATGACTATG+AGG | + | chr1_3:59297301-59297320 | Msa0129380:three_prime_UTR | 45.0% | |
| !!! | ATAAATTTTAAAAAGTAAAA+GGG | - | chr1_3:59294480-59294499 | None:intergenic | 5.0% |
| !!! | TAATTTTAAAAACTAAATTA+TGG | - | chr1_3:59296492-59296511 | None:intergenic | 5.0% |
| TATTGTCGAGTAGCGTAGCG+AGG | + | chr1_3:59293804-59293823 | Msa0129380:five_prime_UTR | 50.0% | |
| ATTGTCGAGTAGCGTAGCGA+GGG | + | chr1_3:59293805-59293824 | Msa0129380:five_prime_UTR | 50.0% | |
| ! | CGTAGCGAGGGTTTGGATTT+TGG | + | chr1_3:59293817-59293836 | Msa0129380:five_prime_UTR | 50.0% |
| !! | TCGGATTCGACGCTCTAAAG+AGG | + | chr1_3:59294321-59294340 | Msa0129380:CDS | 50.0% |
| CCGTTGGGTTCAATTGCAAG+TGG | + | chr1_3:59295503-59295522 | Msa0129380:CDS | 50.0% | |
| AGCAGTGGGCCATTTGTATC+TGG | - | chr1_3:59295587-59295606 | None:intergenic | 50.0% | |
| TACTGAAGCTGAGCATCAGG+TGG | + | chr1_3:59295628-59295647 | Msa0129380:CDS | 50.0% | |
| AGCATCAGGTGGTTGACGAT+GGG | + | chr1_3:59295639-59295658 | Msa0129380:CDS | 50.0% | |
| GAGCATCAGGTGGTTGACAA+TGG | + | chr1_3:59295749-59295768 | Msa0129380:CDS | 50.0% | |
| GGCAGCTACCACATTACCAT+TGG | + | chr1_3:59296090-59296109 | Msa0129380:CDS | 50.0% | |
| TCAGGAGAATTGAGGGACTC+TGG | + | chr1_3:59296199-59296218 | Msa0129380:CDS | 50.0% | |
| CTCCAACCCTAGGCATGATA+CGG | + | chr1_3:59296366-59296385 | Msa0129380:CDS | 50.0% | |
| TTCCGTATCATGCCTAGGGT+TGG | - | chr1_3:59296371-59296390 | None:intergenic | 50.0% | |
| GCACTTTCCGTATCATGCCT+AGG | - | chr1_3:59296376-59296395 | None:intergenic | 50.0% | |
| ! | AGGCTTGATGGTCAACTTGG+TGG | + | chr1_3:59296843-59296862 | Msa0129380:CDS | 50.0% |
| GGTTTCACTGCAGAGAGTCA+TGG | + | chr1_3:59297017-59297036 | Msa0129380:intron | 50.0% | |
| TGTGGTATGACTATGAGGGC+AGG | + | chr1_3:59297306-59297325 | Msa0129380:three_prime_UTR | 50.0% | |
| GTGGTATGACTATGAGGGCA+GGG | + | chr1_3:59297307-59297326 | Msa0129380:three_prime_UTR | 50.0% | |
| CCAAGGTTCAAGTCTGGGCA+AGG | - | chr1_3:59294926-59294945 | None:intergenic | 55.0% | |
| CCTTGCCCAGACTTGAACCT+TGG | + | chr1_3:59294923-59294942 | Msa0129380:intron | 55.0% | |
| GGGTGGGCAGTTTGAGCTAA+TGG | - | chr1_3:59294975-59294994 | None:intergenic | 55.0% | |
| GAGCATCAGGTGGTTGACGA+TGG | + | chr1_3:59295638-59295657 | Msa0129380:CDS | 55.0% | |
| GCGCAGCATAGATACTAGCC+AGG | + | chr1_3:59295883-59295902 | Msa0129380:CDS | 55.0% | |
| ! | GACAAAGGGCATGGCATCGA+TGG | + | chr1_3:59295989-59296008 | Msa0129380:CDS | 55.0% |
| GTGGTAGCTGCCAACTCTGT+GGG | - | chr1_3:59296082-59296101 | None:intergenic | 55.0% | |
| TGTGGTAGCTGCCAACTCTG+TGG | - | chr1_3:59296083-59296102 | None:intergenic | 55.0% | |
| CGAGTAGCGTAGCGAGGGTT+TGG | + | chr1_3:59293810-59293829 | Msa0129380:five_prime_UTR | 60.0% | |
| CTCAAACTGCCCACCCATGC+TGG | + | chr1_3:59294979-59294998 | Msa0129380:intron | 60.0% | |
| !! | GCATGGCATCGATGGCAGCG+CGG | + | chr1_3:59295997-59296016 | Msa0129380:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 59293793 | 59297372 | 59293793 | ID=Msa0129380;Name=Msa0129380 |
| chr1_3 | mRNA | 59293793 | 59297372 | 59293793 | ID=Msa0129380-mRNA-1;Parent=Msa0129380;Name=Msa0129380-mRNA-1;_AED=0.02;_eAED=0.02;_QI=137|1|1|1|0.75|0.8|5|234|501 |
| chr1_3 | exon | 59293793 | 59293893 | 59293793 | ID=Msa0129380-mRNA-1:exon:19292;Parent=Msa0129380-mRNA-1 |
| chr1_3 | exon | 59294205 | 59294377 | 59294205 | ID=Msa0129380-mRNA-1:exon:19293;Parent=Msa0129380-mRNA-1 |
| chr1_3 | exon | 59295325 | 59296474 | 59295325 | ID=Msa0129380-mRNA-1:exon:19294;Parent=Msa0129380-mRNA-1 |
| chr1_3 | exon | 59296801 | 59296910 | 59296801 | ID=Msa0129380-mRNA-1:exon:19295;Parent=Msa0129380-mRNA-1 |
| chr1_3 | exon | 59297030 | 59297372 | 59297030 | ID=Msa0129380-mRNA-1:exon:19296;Parent=Msa0129380-mRNA-1 |
| chr1_3 | five_prime_UTR | 59293793 | 59293893 | 59293793 | ID=Msa0129380-mRNA-1:five_prime_utr;Parent=Msa0129380-mRNA-1 |
| chr1_3 | five_prime_UTR | 59294205 | 59294240 | 59294205 | ID=Msa0129380-mRNA-1:five_prime_utr;Parent=Msa0129380-mRNA-1 |
| chr1_3 | CDS | 59294241 | 59294377 | 59294241 | ID=Msa0129380-mRNA-1:cds;Parent=Msa0129380-mRNA-1 |
| chr1_3 | CDS | 59295325 | 59296474 | 59295325 | ID=Msa0129380-mRNA-1:cds;Parent=Msa0129380-mRNA-1 |
| chr1_3 | CDS | 59296801 | 59296910 | 59296801 | ID=Msa0129380-mRNA-1:cds;Parent=Msa0129380-mRNA-1 |
| chr1_3 | CDS | 59297030 | 59297138 | 59297030 | ID=Msa0129380-mRNA-1:cds;Parent=Msa0129380-mRNA-1 |
| chr1_3 | three_prime_UTR | 59297139 | 59297372 | 59297139 | ID=Msa0129380-mRNA-1:three_prime_utr;Parent=Msa0129380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
