Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035270 | XP_013469313.1 | 89.903 | 515 | 38 | 2 | 1 | 501 | 1 | 515 | 0.0 | 927 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa0035270 | 0.847727 | 9.630607e-60 | -8.615850e-47 |
| Msa0014770 | Msa0035270 | 0.829470 | 5.056939e-55 | -8.615850e-47 |
| Msa0017670 | Msa0035270 | 0.819306 | 1.244552e-52 | -8.615850e-47 |
| Msa0025160 | Msa0035270 | 0.840830 | 6.865581e-58 | -8.615850e-47 |
| Msa0025580 | Msa0035270 | 0.845531 | 3.832422e-59 | -8.615850e-47 |
| Msa0032460 | Msa0035270 | 0.840526 | 8.246308e-58 | -8.615850e-47 |
| Msa0034120 | Msa0035270 | 0.803941 | 2.740584e-49 | -8.615850e-47 |
| Msa0035270 | Msa0035340 | 0.936869 | 8.694867e-98 | -8.615850e-47 |
| Msa0035270 | Msa0035380 | 0.937490 | 3.182560e-98 | -8.615850e-47 |
| Msa0035270 | Msa0050660 | 0.824907 | 6.258469e-54 | -8.615850e-47 |
| Msa0035270 | Msa0050700 | 0.826809 | 2.213163e-54 | -8.615850e-47 |
| Msa0035270 | Msa0050790 | 0.824907 | 6.256871e-54 | -8.615850e-47 |
| Msa0035270 | Msa0053070 | 0.815425 | 9.306469e-52 | -8.615850e-47 |
| Msa0035270 | Msa0067330 | 0.810001 | 1.431650e-50 | -8.615850e-47 |
| Msa0035270 | Msa0072520 | 0.816247 | 6.101698e-52 | -8.615850e-47 |
| Msa0035270 | Msa0073120 | 0.831004 | 2.134005e-55 | -8.615850e-47 |
| Msa0035270 | Msa0098040 | 0.803659 | 3.136431e-49 | -8.615850e-47 |
| Msa0035270 | Msa0098410 | 0.823606 | 1.265166e-53 | -8.615850e-47 |
| Msa0035270 | Msa0121330 | 0.854517 | 1.168016e-61 | -8.615850e-47 |
| Msa0035270 | Msa0123070 | 0.827722 | 1.337085e-54 | -8.615850e-47 |
| Msa0035270 | Msa0129380 | 0.936653 | 1.231261e-97 | -8.615850e-47 |
| Msa0035270 | Msa0140280 | 0.817725 | 2.840934e-52 | -8.615850e-47 |
| Msa0035270 | Msa0146650 | 0.850270 | 1.892138e-60 | -8.615850e-47 |
| Msa0035270 | Msa0154620 | 0.818196 | 2.223941e-52 | -8.615850e-47 |
| Msa0035270 | Msa0166170 | 0.801337 | 9.442814e-49 | -8.615850e-47 |
| Msa0035270 | Msa0173290 | 0.844026 | 9.755601e-59 | -8.615850e-47 |
| Msa0035270 | Msa0174290 | 0.808813 | 2.576007e-50 | -8.615850e-47 |
| Msa0035270 | Msa0176060 | 0.904518 | 1.128771e-79 | -8.615850e-47 |
| Msa0035270 | Msa0185960 | 0.833985 | 3.892115e-56 | -8.615850e-47 |
| Msa0035270 | Msa0230800 | 0.802437 | 5.613740e-49 | -8.615850e-47 |
| Msa0035270 | Msa0307670 | 0.808775 | 2.624479e-50 | -8.615850e-47 |
| Msa0035270 | Msa0330520 | 0.821505 | 3.896275e-53 | -8.615850e-47 |
| Msa0035270 | Msa0347530 | 0.808564 | 2.910429e-50 | -8.615850e-47 |
| Msa0035270 | Msa0367520 | 0.825633 | 4.214511e-54 | -8.615850e-47 |
| Msa0035270 | Msa0380670 | 0.835811 | 1.350024e-56 | -8.615850e-47 |
| Msa0035270 | Msa0381730 | 0.811341 | 7.349447e-51 | -8.615850e-47 |
| Msa0035270 | Msa0422050 | 0.826425 | 2.732687e-54 | -8.615850e-47 |
| Msa0035270 | Msa0426530 | 0.808928 | 2.433083e-50 | -8.615850e-47 |
| Msa0035270 | Msa0430300 | 0.829575 | 4.767990e-55 | -8.615850e-47 |
| Msa0035270 | Msa0431200 | 0.832229 | 1.064717e-55 | -8.615850e-47 |
| Msa0035270 | Msa0432010 | 0.815693 | 8.111692e-52 | -8.615850e-47 |
| Msa0035270 | Msa0468700 | 0.810291 | 1.239998e-50 | -8.615850e-47 |
| Msa0035270 | Msa0476280 | 0.801382 | 9.243731e-49 | -8.615850e-47 |
| Msa0035270 | Msa0481890 | 0.814184 | 1.753226e-51 | -8.615850e-47 |
| Msa0035270 | Msa0484570 | 0.801475 | 8.849591e-49 | -8.615850e-47 |
| Msa0035270 | Msa0514580 | 0.806656 | 7.398671e-50 | -8.615850e-47 |
| Msa0035270 | Msa0517250 | 0.820275 | 7.477045e-53 | -8.615850e-47 |
| Msa0035270 | Msa0520260 | 0.838452 | 2.851344e-57 | -8.615850e-47 |
| Msa0035270 | Msa0520870 | 0.808861 | 2.515279e-50 | -8.615850e-47 |
| Msa0035270 | Msa0529030 | 0.803442 | 3.479885e-49 | -8.615850e-47 |
| Msa0035270 | Msa0531960 | 0.828888 | 6.997749e-55 | -8.615850e-47 |
| Msa0035270 | Msa0532050 | 0.814585 | 1.429356e-51 | -8.615850e-47 |
| Msa0035270 | Msa0550590 | 0.817089 | 3.951875e-52 | -8.615850e-47 |
| Msa0035270 | Msa0567170 | 0.842975 | 1.861771e-58 | -8.615850e-47 |
| Msa0035270 | Msa0580200 | 0.801489 | 8.788399e-49 | -8.615850e-47 |
| Msa0035270 | Msa0590200 | 0.827544 | 1.475582e-54 | -8.615850e-47 |
| Msa0035270 | Msa0591170 | 0.821223 | 4.526682e-53 | -8.615850e-47 |
| Msa0035270 | Msa0606580 | 0.807603 | 4.663194e-50 | -8.615850e-47 |
| Msa0035270 | Msa0607800 | 0.812846 | 3.452444e-51 | -8.615850e-47 |
| Msa0035270 | Msa0619710 | 0.841011 | 6.155448e-58 | -8.615850e-47 |
| Msa0035270 | Msa0621710 | 0.807160 | 5.788337e-50 | -8.615850e-47 |
| Msa0035270 | Msa0625620 | 0.807333 | 5.320927e-50 | -8.615850e-47 |
| Msa0035270 | Msa0647280 | 0.813749 | 2.187000e-51 | -8.615850e-47 |
| Msa0035270 | Msa0648040 | 0.800937 | 1.139943e-48 | -8.615850e-47 |
| Msa0035270 | Msa0657700 | 0.805916 | 1.059559e-49 | -8.615850e-47 |
| Msa0035270 | Msa0658640 | 0.827630 | 1.406706e-54 | -8.615850e-47 |
| Msa0035270 | Msa0666700 | 0.823229 | 1.549687e-53 | -8.615850e-47 |
| Msa0035270 | Msa0668900 | 0.826765 | 2.266725e-54 | -8.615850e-47 |
| Msa0035270 | Msa0686800 | 0.803870 | 2.835542e-49 | -8.615850e-47 |
| Msa0035270 | Msa0687090 | 0.829522 | 4.910787e-55 | -8.615850e-47 |
| Msa0035270 | Msa0698730 | 0.807468 | 4.980653e-50 | -8.615850e-47 |
| Msa0035270 | Msa0700460 | 0.803975 | 2.696791e-49 | -8.615850e-47 |
| Msa0035270 | Msa0703600 | 0.813015 | 3.169528e-51 | -8.615850e-47 |
| Msa0035270 | Msa0706150 | 0.826509 | 2.609743e-54 | -8.615850e-47 |
| Msa0035270 | Msa0709200 | 0.815623 | 8.408481e-52 | -8.615850e-47 |
| Msa0035270 | Msa0709440 | 0.818033 | 2.420186e-52 | -8.615850e-47 |
| Msa0035270 | Msa0716480 | 0.803955 | 2.723353e-49 | -8.615850e-47 |
| Msa0035270 | Msa0730930 | 0.801414 | 9.108175e-49 | -8.615850e-47 |
| Msa0035270 | Msa0735780 | 0.820349 | 7.189115e-53 | -8.615850e-47 |
| Msa0035270 | Msa0740710 | 0.823491 | 1.346183e-53 | -8.615850e-47 |
| Msa0035270 | Msa0747000 | 0.890063 | 1.381555e-73 | -8.615850e-47 |
| Msa0035270 | Msa0747740 | 0.823710 | 1.196217e-53 | -8.615850e-47 |
| Msa0035270 | Msa0773630 | 0.811075 | 8.391317e-51 | -8.615850e-47 |
| Msa0035270 | Msa0780910 | 0.823310 | 1.484073e-53 | -8.615850e-47 |
| Msa0035270 | Msa0792370 | 0.814855 | 1.245466e-51 | -8.615850e-47 |
| Msa0035270 | Msa0815920 | 0.823899 | 1.080179e-53 | -8.615850e-47 |
| Msa0035270 | Msa0818880 | 0.804027 | 2.631148e-49 | -8.615850e-47 |
| Msa0035270 | Msa0821160 | 0.825544 | 4.424171e-54 | -8.615850e-47 |
| Msa0035270 | Msa0824450 | 0.803189 | 3.925501e-49 | -8.615850e-47 |
| Msa0035270 | Msa0837460 | 0.804432 | 2.166627e-49 | -8.615850e-47 |
| Msa0035270 | Msa0909760 | 0.814618 | 1.405324e-51 | -8.615850e-47 |
| Msa0035270 | Msa0921590 | 0.813660 | 2.287928e-51 | -8.615850e-47 |
| Msa0035270 | Msa1021590 | 0.804021 | 2.637934e-49 | -8.615850e-47 |
| Msa0035270 | Msa1025560 | 0.804384 | 2.216363e-49 | -8.615850e-47 |
| Msa0035270 | Msa1034600 | 0.815344 | 9.702167e-52 | -8.615850e-47 |
| Msa0035270 | Msa1035610 | 0.801605 | 8.320299e-49 | -8.615850e-47 |
| Msa0035270 | Msa1042160 | 0.831568 | 1.550832e-55 | -8.615850e-47 |
| Msa0035270 | Msa1042190 | 0.833394 | 5.470950e-56 | -8.615850e-47 |
| Msa0035270 | Msa1042880 | 0.800738 | 1.251766e-48 | -8.615850e-47 |
| Msa0035270 | Msa1064370 | 0.812393 | 4.335849e-51 | -8.615850e-47 |
| Msa0035270 | Msa1074370 | 0.809042 | 2.301100e-50 | -8.615850e-47 |
| Msa0035270 | Msa1077990 | 0.803651 | 3.148506e-49 | -8.615850e-47 |
| Msa0035270 | Msa1078820 | 0.804306 | 2.301174e-49 | -8.615850e-47 |
| Msa0035270 | Msa1078880 | 0.827786 | 1.290317e-54 | -8.615850e-47 |
| Msa0035270 | Msa1078970 | 0.826330 | 2.878870e-54 | -8.615850e-47 |
| Msa0035270 | Msa1080000 | 0.801605 | 8.322039e-49 | -8.615850e-47 |
| Msa0035270 | Msa1081690 | 0.805451 | 1.326568e-49 | -8.615850e-47 |
| Msa0035270 | Msa1084530 | 0.817293 | 3.554446e-52 | -8.615850e-47 |
| Msa0035270 | Msa1104110 | 0.816188 | 6.290362e-52 | -8.615850e-47 |
| Msa0035270 | Msa1105640 | 0.803228 | 3.853044e-49 | -8.615850e-47 |
| Msa0035270 | Msa1123210 | 0.807200 | 5.676155e-50 | -8.615850e-47 |
| Msa0035270 | Msa1123970 | 0.804733 | 1.874457e-49 | -8.615850e-47 |
| Msa0035270 | Msa1125820 | 0.820934 | 5.274755e-53 | -8.615850e-47 |
| Msa0035270 | Msa1125990 | 0.823043 | 1.712421e-53 | -8.615850e-47 |
| Msa0035270 | Msa1132530 | 0.817545 | 3.119779e-52 | -8.615850e-47 |
| Msa0035270 | Msa1147700 | 0.808626 | 2.823617e-50 | -8.615850e-47 |
| Msa0035270 | Msa1167470 | 0.830180 | 3.394959e-55 | -8.615850e-47 |
| Msa0035270 | Msa1169190 | 0.820550 | 6.465981e-53 | -8.615850e-47 |
| Msa0035270 | Msa1169650 | 0.806481 | 8.056365e-50 | -8.615850e-47 |
| Msa0035270 | Msa1171290 | 0.808357 | 3.223146e-50 | -8.615850e-47 |
| Msa0035270 | Msa1171780 | 0.800788 | 1.222982e-48 | -8.615850e-47 |
| Msa0035270 | Msa1190390 | 0.809839 | 1.551358e-50 | -8.615850e-47 |
| Msa0035270 | Msa1214350 | 0.805309 | 1.420639e-49 | -8.615850e-47 |
| Msa0035270 | Msa1216340 | 0.804075 | 2.570830e-49 | -8.615850e-47 |
| Msa0035270 | Msa1217050 | 0.834849 | 2.361887e-56 | -8.615850e-47 |
| Msa0035270 | Msa1217210 | 0.802129 | 6.494130e-49 | -8.615850e-47 |
| Msa0035270 | Msa1218820 | 0.818680 | 1.727574e-52 | -8.615850e-47 |
| Msa0035270 | Msa1226520 | 0.826268 | 2.978134e-54 | -8.615850e-47 |
| Msa0035270 | Msa1240770 | 0.831902 | 1.282458e-55 | -8.615850e-47 |
| Msa0035270 | Msa1244240 | 0.816048 | 6.759689e-52 | -8.615850e-47 |
| Msa0035270 | Msa1254540 | 0.811046 | 8.516407e-51 | -8.615850e-47 |
| Msa0035270 | Msa1262590 | 0.851215 | 1.025868e-60 | -8.615850e-47 |
| Msa0035270 | Msa1282260 | 0.805254 | 1.459015e-49 | -8.615850e-47 |
| Msa0035270 | Msa1306570 | 0.813262 | 2.797818e-51 | -8.615850e-47 |
| Msa0035270 | Msa1321340 | 0.805177 | 1.514092e-49 | -8.615850e-47 |
| Msa0035270 | Msa1343180 | 0.817025 | 4.083671e-52 | -8.615850e-47 |
| Msa0035270 | Msa1349690 | 0.808050 | 3.746194e-50 | -8.615850e-47 |
| Msa0035270 | Msa1358290 | 0.814554 | 1.452485e-51 | -8.615850e-47 |
| Msa0035270 | Msa1368750 | 0.813390 | 2.622939e-51 | -8.615850e-47 |
| Msa0035270 | Msa1374790 | 0.821367 | 4.193098e-53 | -8.615850e-47 |
| Msa0035270 | Msa1375350 | 0.818878 | 1.557343e-52 | -8.615850e-47 |
| Msa0035270 | Msa1383310 | 0.817574 | 3.073307e-52 | -8.615850e-47 |
| Msa0035270 | Msa1392740 | 0.804010 | 2.651966e-49 | -8.615850e-47 |
| Msa0035270 | Msa1393780 | 0.805153 | 1.531664e-49 | -8.615850e-47 |
| Msa0035270 | Msa1405460 | 0.800707 | 1.269957e-48 | -8.615850e-47 |
| Msa0035270 | Msa1409410 | 0.825014 | 5.905259e-54 | -8.615850e-47 |
| Msa0035270 | Msa1414170 | 0.843023 | 1.808030e-58 | -8.615850e-47 |
| Msa0035270 | Msa1426110 | 0.800158 | 1.643369e-48 | -8.615850e-47 |
| Msa0035270 | Msa1440630 | 0.823929 | 1.063224e-53 | -8.615850e-47 |
| Msa0035270 | Msa1451820 | 0.820733 | 5.869021e-53 | -8.615850e-47 |
| Msa0035270 | Msa1462490 | 0.825892 | 3.657858e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035270 | MtrunA17_Chr1g0197601 | 89.903 | 515 | 38 | 2 | 1 | 501 | 1 | 515 | 0.0 | 927 |
| Msa0035270 | MtrunA17_Chr6g0478171 | 49.231 | 65 | 33 | 0 | 21 | 85 | 56 | 120 | 1.19e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035270 | AT3G52170.3 | 53.600 | 125 | 56 | 1 | 2 | 126 | 1 | 123 | 3.83e-30 | 123 |
| Msa0035270 | AT3G52170.4 | 53.600 | 125 | 56 | 1 | 2 | 126 | 1 | 123 | 3.83e-30 | 123 |
| Msa0035270 | AT3G52170.2 | 62.366 | 93 | 35 | 0 | 2 | 94 | 1 | 93 | 5.96e-30 | 123 |
| Msa0035270 | AT3G52170.1 | 62.366 | 93 | 35 | 0 | 2 | 94 | 1 | 93 | 5.96e-30 | 123 |
| Msa0035270 | AT5G58210.1 | 54.717 | 53 | 20 | 1 | 30 | 82 | 48 | 96 | 4.85e-12 | 68.2 |
| Msa0035270 | AT5G58210.4 | 54.717 | 53 | 20 | 1 | 30 | 82 | 48 | 96 | 4.85e-12 | 68.2 |
| Msa0035270 | AT5G58210.2 | 54.717 | 53 | 20 | 1 | 30 | 82 | 48 | 96 | 4.85e-12 | 68.2 |
| Msa0035270 | AT5G58210.3 | 54.717 | 53 | 20 | 1 | 30 | 82 | 48 | 96 | 4.85e-12 | 68.2 |
Find 133 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAGCGAGGGTTTGGATTT+TGG | 0.126338 | 1_1:-63397871 | Msa0035270:five_prime_UTR |
| CGCAGATAATTCTAATTTAC+TGG | 0.215505 | 1_1:-63395391 | Msa0035270:CDS |
| CAGTTGTGTTGATTCTTCTC+TGG | 0.258782 | 1_1:+63394816 | None:intergenic |
| CCTTGTTAGCCAAATCTAAA+TGG | 0.263381 | 1_1:+63396009 | None:intergenic |
| TTCCATTGAGATCTGTTTCT+AGG | 0.264559 | 1_1:-63395533 | Msa0035270:CDS |
| GACAATGGGCATGTCGTAAA+TGG | 0.303801 | 1_1:-63395924 | Msa0035270:CDS |
| CTTCTTTATATCCTTCTCTA+AGG | 0.313422 | 1_1:+63395461 | None:intergenic |
| TCTGGAACTTTCTTGAGTTC+AGG | 0.316178 | 1_1:+63396122 | None:intergenic |
| GTTTCTGATGGGCATTATAC+TGG | 0.323187 | 1_1:-63395855 | Msa0035270:CDS |
| TCCTGCTAAATTCAACTTGC+AGG | 0.334858 | 1_1:-63396240 | Msa0035270:CDS |
| AAAGCCATTGTCAATGCCTT+TGG | 0.335893 | 1_1:-63394591 | Msa0035270:CDS |
| AGATGTTGGCCATTTAGATT+TGG | 0.336361 | 1_1:-63396018 | Msa0035270:CDS |
| CGAGTAGCGTAGCGAGGGTT+TGG | 0.350834 | 1_1:-63397878 | Msa0035270:five_prime_UTR |
| AGCAGTGGGCCATTTGTATC+TGG | 0.366951 | 1_1:+63396104 | None:intergenic |
| ATGATGCATTCTGTTGTAAA+AGG | 0.367939 | 1_1:-63397447 | Msa0035270:CDS |
| AGACACAACAGTTGCTTCAA+TGG | 0.376221 | 1_1:+63395983 | None:intergenic |
| TTCCCTCTTCTTCTTCTTCG+AGG | 0.376601 | 1_1:-63397816 | Msa0035270:intron |
| CAAGGAATCCGTTGAAGCTT+CGG | 0.382813 | 1_1:-63395769 | Msa0035270:CDS |
| ATGCACTGACTTGTTCTTTG+TGG | 0.392523 | 1_1:+63395280 | None:intergenic |
| AGTTGTGTTGATTCTTCTCT+GGG | 0.392668 | 1_1:+63394817 | None:intergenic |
| TTATGTGTAAGAGTAATTGA+TGG | 0.394119 | 1_1:+63396335 | None:intergenic |
| GCTGATAAATATAGGCTTGA+TGG | 0.400710 | 1_1:-63394857 | Msa0035270:CDS |
| TGCACTGACTTGTTCTTTGT+GGG | 0.406260 | 1_1:+63395281 | None:intergenic |
| CCTTGTTTGTCATGTCTACC+TGG | 0.406365 | 1_1:+63395787 | None:intergenic |
| AAGCCATTGTCAATGCCTTT+GGG | 0.408921 | 1_1:-63394590 | Msa0035270:CDS |
| CACTTGCAATTGAACCCAAC+GGG | 0.411311 | 1_1:+63396186 | None:intergenic |
| GGTTTACTTACCTGCATCTC+AGG | 0.415129 | 1_1:+63395630 | None:intergenic |
| CAATAGAGCGAAAAGAGGAT+TGG | 0.415556 | 1_1:+63394614 | None:intergenic |
| CTCAGGTATAGTAGCTTCAA+TGG | 0.415944 | 1_1:+63395647 | None:intergenic |
| GATGCACCGAGAAAATGTTC+AGG | 0.432615 | 1_1:+63396161 | None:intergenic |
| AGGAATAGCAATGGAATAGA+AGG | 0.440749 | 1_1:-63395513 | Msa0035270:CDS |
| TTATACTGAAGCTGAGCATC+AGG | 0.444025 | 1_1:-63396063 | Msa0035270:CDS |
| AGTTTCCACTGTTTGACTCT+TGG | 0.444341 | 1_1:+63396360 | None:intergenic |
| TTATACTGAAACTGAGCATC+AGG | 0.445424 | 1_1:-63395952 | Msa0035270:CDS |
| GAAGCTTCTGTTGTTTCTGA+TGG | 0.445970 | 1_1:-63395867 | Msa0035270:CDS |
| AGCAATGGAATAGAAGGTTC+AGG | 0.448760 | 1_1:-63395507 | Msa0035270:CDS |
| CACTTTCCGTATCATGCCTA+GGG | 0.451455 | 1_1:+63395316 | None:intergenic |
| AGCTTGAGATTGTTGACAAA+GGG | 0.454249 | 1_1:-63395713 | Msa0035270:CDS |
| AATAGAGCGAAAAGAGGATT+GGG | 0.454588 | 1_1:+63394615 | None:intergenic |
| TCCTGCAAGTTGAATTTAGC+AGG | 0.458783 | 1_1:+63396239 | None:intergenic |
| TGAAACATATAACCAAAGTC+AGG | 0.459332 | 1_1:-63395235 | Msa0035270:intron |
| GCACTTTCCGTATCATGCCT+AGG | 0.462980 | 1_1:+63395315 | None:intergenic |
| TGCATGAAGCTGATAAATAT+AGG | 0.464650 | 1_1:-63394865 | Msa0035270:CDS |
| GTGTGAAATCAGTGTGAAGA+AGG | 0.467565 | 1_1:+63397841 | None:intergenic |
| GAATCAACACAACTGTAGAT+AGG | 0.471897 | 1_1:-63394808 | Msa0035270:CDS |
| GTGGCTCTTTCTACACTGTA+AGG | 0.472014 | 1_1:-63396304 | Msa0035270:CDS |
| AATTCAAGAAAATAGAGTGC+TGG | 0.476605 | 1_1:-63396264 | Msa0035270:CDS |
| CTCGGTGCATCATCAAATGA+AGG | 0.479411 | 1_1:-63396149 | Msa0035270:CDS |
| ATCAGAAACAACAGAAGCTT+CGG | 0.480753 | 1_1:+63395869 | None:intergenic |
| TAGAAGGTTCAGGAGAATTG+AGG | 0.482054 | 1_1:-63395497 | Msa0035270:CDS |
| CCATTTAGATTTGGCTAACA+AGG | 0.487753 | 1_1:-63396009 | Msa0035270:CDS |
| AGCATCAGGTGGTTGACAAT+GGG | 0.489034 | 1_1:-63395938 | Msa0035270:CDS |
| GAGAAATTTGAGAGTCCCCT+TGG | 0.490832 | 1_1:-63395366 | Msa0035270:CDS |
| AGAAGGTTCAGGAGAATTGA+GGG | 0.492321 | 1_1:-63395496 | Msa0035270:CDS |
| GGTTGTGTGGTATGACTATG+AGG | 0.492424 | 1_1:-63394387 | Msa0035270:three_prime_UTR |
| AAGCTTCTGTTGTTTCTGAT+GGG | 0.493641 | 1_1:-63395866 | Msa0035270:CDS |
| AGCTCAAGGTTGTTGACAAA+GGG | 0.499242 | 1_1:-63395827 | Msa0035270:CDS |
| AGAGAAGGATATAAAGAAGT+TGG | 0.501128 | 1_1:-63395457 | Msa0035270:CDS |
| TATAGGCTTGATGGTCAACT+TGG | 0.501804 | 1_1:-63394848 | Msa0035270:CDS |
| ATGTGAAGTTATTCTTCAGC+AGG | 0.504378 | 1_1:+63394478 | None:intergenic |
| ACACTGTAAGGGAGATTGTA+CGG | 0.505294 | 1_1:-63396292 | Msa0035270:CDS |
| TCGGATTCGACGCTCTAAAG+AGG | 0.508308 | 1_1:-63397367 | Msa0035270:CDS |
| TTTGTCAACAACCTTGAGCT+CGG | 0.510556 | 1_1:+63395830 | None:intergenic |
| GACAAAGGGCATGGCATCGA+TGG | 0.513666 | 1_1:-63395699 | Msa0035270:CDS |
| TATATTTATCAGCTTCATGC+AGG | 0.514009 | 1_1:+63394867 | None:intergenic |
| TTCCGTATCATGCCTAGGGT+TGG | 0.517395 | 1_1:+63395320 | None:intergenic |
| ATTCAAGAAAATAGAGTGCT+GGG | 0.524858 | 1_1:-63396263 | Msa0035270:CDS |
| AGCTACTATACCTGAGATGC+AGG | 0.526391 | 1_1:-63395640 | Msa0035270:CDS |
| AAGAAAGTTCCAGATACAAA+TGG | 0.528635 | 1_1:-63396113 | Msa0035270:CDS |
| TTCCTAGAAACAGATCTCAA+TGG | 0.528728 | 1_1:+63395531 | None:intergenic |
| CTCCAACCCTAGGCATGATA+CGG | 0.531026 | 1_1:-63395322 | Msa0035270:CDS |
| AGAAACAACCGAAGCTTCAA+CGG | 0.533636 | 1_1:+63395761 | None:intergenic |
| CTGTTGTAAAAGGTGGTTGG+AGG | 0.534279 | 1_1:-63397437 | Msa0035270:CDS |
| GTTTCACTGCAGAGAGTCAT+GGG | 0.534713 | 1_1:-63394670 | Msa0035270:intron |
| AGAGCATTTACTTTAGCCAA+TGG | 0.537834 | 1_1:+63395582 | None:intergenic |
| GGTTTCACTGCAGAGAGTCA+TGG | 0.537898 | 1_1:-63394671 | Msa0035270:intron |
| GAACTTTCTTGAGTTCAGGA+TGG | 0.544040 | 1_1:+63396126 | None:intergenic |
| TCAGGAGAATTGAGGGACTC+TGG | 0.544330 | 1_1:-63395489 | Msa0035270:CDS |
| GGCAGCTACCACATTACCAT+TGG | 0.544842 | 1_1:-63395598 | Msa0035270:CDS |
| CTCTGGTAATTCCTTAGAGA+AGG | 0.546329 | 1_1:-63395472 | Msa0035270:CDS |
| GCTATTATCTACGCTGATTG+TGG | 0.546802 | 1_1:-63394516 | Msa0035270:three_prime_UTR |
| TCAGGTATAGTAGCTTCAAT+GGG | 0.548881 | 1_1:+63395648 | None:intergenic |
| GTGGTAGCTGCCAACTCTGT+GGG | 0.550543 | 1_1:+63395609 | None:intergenic |
| GAGCATCAGGTGGTTGACAA+TGG | 0.551435 | 1_1:-63395939 | Msa0035270:CDS |
| GCCAAGCAAAATGATTCTGA+AGG | 0.552643 | 1_1:-63397399 | Msa0035270:CDS |
| AGCATCAGGTGGTTGACGAT+GGG | 0.552915 | 1_1:-63396049 | Msa0035270:CDS |
| ACGCTCTAAAGAGGAAAGAA+AGG | 0.556254 | 1_1:-63397358 | Msa0035270:CDS |
| TAAAGGAAATCTCCAACCCT+AGG | 0.557511 | 1_1:-63395332 | Msa0035270:CDS |
| TGCTTGGCAAGAGCAAATGT+TGG | 0.557759 | 1_1:+63397414 | None:intergenic |
| GCGCAGCATAGATACTAGCC+AGG | 0.560011 | 1_1:-63395805 | Msa0035270:CDS |
| GAGATTGTTGACAAAGGGCA+TGG | 0.567220 | 1_1:-63395708 | Msa0035270:CDS |
| TGTGGTAGCTGCCAACTCTG+TGG | 0.569908 | 1_1:+63395608 | None:intergenic |
| CACTGTAAGGGAGATTGTAC+GGG | 0.570068 | 1_1:-63396291 | Msa0035270:CDS |
| GCTTTCAATAGAGCGAAAAG+AGG | 0.573031 | 1_1:+63394609 | None:intergenic |
| AGGCTTGATGGTCAACTTGG+TGG | 0.575093 | 1_1:-63394845 | Msa0035270:CDS |
| GAGCATCAGGTGGTTGACGA+TGG | 0.577300 | 1_1:-63396050 | Msa0035270:CDS |
| TTTCCCAAAGGCATTGACAA+TGG | 0.578706 | 1_1:+63394587 | None:intergenic |
| ATGCACCGAGAAAATGTTCA+GGG | 0.579688 | 1_1:+63396162 | None:intergenic |
| GAGCTCAAGGTTGTTGACAA+AGG | 0.582128 | 1_1:-63395828 | Msa0035270:CDS |
| TACTTTAGCCAATGGTAATG+TGG | 0.586681 | 1_1:+63395590 | None:intergenic |
| TTATACTGGAACCGAGCTCA+AGG | 0.590294 | 1_1:-63395841 | Msa0035270:CDS |
| TGTGGTATGACTATGAGGGC+AGG | 0.594180 | 1_1:-63394382 | Msa0035270:three_prime_UTR |
| TGTTGTTTGTCACATCGACA+TGG | 0.596080 | 1_1:+63395898 | None:intergenic |
| CCAGGTAGACATGACAAACA+AGG | 0.596454 | 1_1:-63395787 | Msa0035270:CDS |
| ATACCTCGAAGAAGAAGAAG+AGG | 0.601666 | 1_1:+63397813 | None:intergenic |
| GGTAAGTAAACCCACAGAGT+TGG | 0.602476 | 1_1:-63395619 | Msa0035270:CDS |
| TGCTGAAGAATAACTTCACA+TGG | 0.603325 | 1_1:-63394476 | Msa0035270:three_prime_UTR |
| TAAAGAGGAAAGAAAGGCAA+TGG | 0.604920 | 1_1:-63397352 | Msa0035270:CDS |
| CGCGGTAGATGTGATAAACA+AGG | 0.605122 | 1_1:-63395673 | Msa0035270:CDS |
| CCACTTGCAATTGAACCCAA+CGG | 0.609354 | 1_1:+63396185 | None:intergenic |
| TGGCTCTTTCTACACTGTAA+GGG | 0.609781 | 1_1:-63396303 | Msa0035270:CDS |
| TATTGTCGAGTAGCGTAGCG+AGG | 0.610584 | 1_1:-63397884 | Msa0035270:five_prime_UTR |
| TCTGTTTCTAGGAATAGCAA+TGG | 0.612089 | 1_1:-63395522 | Msa0035270:CDS |
| CCGTTGGGTTCAATTGCAAG+TGG | 0.620104 | 1_1:-63396185 | Msa0035270:CDS |
| CCAAGCAAAATGATTCTGAA+GGG | 0.624278 | 1_1:-63397398 | Msa0035270:CDS |
| ACTCTTACACATAAAGAAGT+CGG | 0.628566 | 1_1:-63396326 | Msa0035270:CDS |
| GAGCTTGAGATTGTTGACAA+AGG | 0.629639 | 1_1:-63395714 | Msa0035270:CDS |
| GATGGGCATGTCATAGATGT+TGG | 0.629886 | 1_1:-63396032 | Msa0035270:CDS |
| ATTGTCGAGTAGCGTAGCGA+GGG | 0.630230 | 1_1:-63397883 | Msa0035270:five_prime_UTR |
| TATCAGAAACAGAAAGCAGT+GGG | 0.630787 | 1_1:+63396090 | None:intergenic |
| GTGGTATGACTATGAGGGCA+GGG | 0.637413 | 1_1:-63394381 | Msa0035270:three_prime_UTR |
| TACTGAAGCTGAGCATCAGG+TGG | 0.639952 | 1_1:-63396060 | Msa0035270:CDS |
| ATTCTGTTGTAAAAGGTGGT+TGG | 0.651800 | 1_1:-63397440 | Msa0035270:CDS |
| ATGCATTCTGTTGTAAAAGG+TGG | 0.653181 | 1_1:-63397444 | Msa0035270:CDS |
| TACTGAAACTGAGCATCAGG+TGG | 0.657285 | 1_1:-63395949 | Msa0035270:CDS |
| GTTGTGTGGTATGACTATGA+GGG | 0.680122 | 1_1:-63394386 | Msa0035270:three_prime_UTR |
| TACCTCGAAGAAGAAGAAGA+GGG | 0.680140 | 1_1:+63397814 | None:intergenic |
| CTTACACATAAAGAAGTCGG+TGG | 0.685561 | 1_1:-63396323 | Msa0035270:CDS |
| AGGTACCAAGAGTCAAACAG+TGG | 0.692269 | 1_1:-63396365 | Msa0035270:CDS |
| TTATCAGAAACAGAAAGCAG+TGG | 0.699398 | 1_1:+63396089 | None:intergenic |
| ACGCTACTCGACAATAGTGA+CGG | 0.701418 | 1_1:+63397891 | None:intergenic |
| CAGTAAATTAGAATTATCTG+CGG | 0.719411 | 1_1:+63395392 | None:intergenic |
| GCATGGCATCGATGGCAGCG+CGG | 0.725070 | 1_1:-63395691 | Msa0035270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTTAAAAAGTAAAAG+GGG | + | chr1_1:63395024-63395043 | None:intergenic | 10.0% |
| !!! | CATAAATTTTAAAAAGTAAA+AGG | + | chr1_1:63395026-63395045 | None:intergenic | 10.0% |
| !! | TTCTATTATAAATACAAATA+AGG | + | chr1_1:63395658-63395677 | None:intergenic | 10.0% |
| !!! | ATAATCTAAAATTTTAGAAA+GGG | + | chr1_1:63397803-63397822 | None:intergenic | 10.0% |
| !!! | AATAATCTAAAATTTTAGAA+AGG | + | chr1_1:63397804-63397823 | None:intergenic | 10.0% |
| !! | AATTCAATTAAATAAGTATC+CGG | + | chr1_1:63394640-63394659 | None:intergenic | 15.0% |
| !! | ACAAATTGTTAAAATCAATT+AGG | + | chr1_1:63395754-63395773 | None:intergenic | 15.0% |
| !!! | GATTTTAACAATTTGTTTAA+AGG | - | chr1_1:63395758-63395777 | Msa0035270:CDS | 15.0% |
| !! | AAACTAAATTATGGATAAAA+AGG | + | chr1_1:63397028-63397047 | None:intergenic | 15.0% |
| !! | TGAAGTAAAGTTAATTAAAT+TGG | - | chr1_1:63397506-63397525 | Msa0035270:intron | 15.0% |
| !!! | TAATCTAAAATTTTAGAAAG+GGG | + | chr1_1:63397802-63397821 | None:intergenic | 15.0% |
| !! | GCGAAAATAAAAAAGAAAAT+GGG | + | chr1_1:63394480-63394499 | None:intergenic | 20.0% |
| !! | AGCGAAAATAAAAAAGAAAA+TGG | + | chr1_1:63394481-63394500 | None:intergenic | 20.0% |
| !! | AAATGAAAGAGAGAAATTAT+GGG | + | chr1_1:63394579-63394598 | None:intergenic | 20.0% |
| !! | AAAATGAAAGAGAGAAATTA+TGG | + | chr1_1:63394580-63394599 | None:intergenic | 20.0% |
| !! | ATTCAATTAAATAAGTATCC+GGG | + | chr1_1:63394639-63394658 | None:intergenic | 20.0% |
| !!! | AAGAAATTACTTTTGAATGA+AGG | + | chr1_1:63394913-63394932 | None:intergenic | 20.0% |
| !!! | AAACAATGAAAACTTTGTTT+TGG | - | chr1_1:63395130-63395149 | Msa0035270:intron | 20.0% |
| !!! | GCATTTTCAAAATTTATGAA+AGG | - | chr1_1:63395152-63395171 | Msa0035270:intron | 20.0% |
| !! | TACACAAATAATAACACAAT+GGG | + | chr1_1:63395591-63395610 | None:intergenic | 20.0% |
| !!! | GTTTTGTTCTAAAAATTGAT+CGG | + | chr1_1:63396028-63396047 | None:intergenic | 20.0% |
| !!! | AATTACTTTCTTTCTAGTTA+TGG | - | chr1_1:63397275-63397294 | Msa0035270:intron | 20.0% |
| !!! | ATTACTTTCTTTCTAGTTAT+GGG | - | chr1_1:63397276-63397295 | Msa0035270:intron | 20.0% |
| !! | CTTTACTTCATTAAACTAAA+TGG | + | chr1_1:63397496-63397515 | None:intergenic | 20.0% |
| !!! | AATCTAAAATTTTAGAAAGG+GGG | + | chr1_1:63397801-63397820 | None:intergenic | 20.0% |
| !! | TAGGTTAGTTGAATGAAAAT+GGG | + | chr1_1:63394547-63394566 | None:intergenic | 25.0% |
| !! | TTAGGTTAGTTGAATGAAAA+TGG | + | chr1_1:63394548-63394567 | None:intergenic | 25.0% |
| !!! | ATTACTTTTGAATGAAGGAT+TGG | + | chr1_1:63394908-63394927 | None:intergenic | 25.0% |
| ! | TTATATTGCTAACAAACGAA+TGG | - | chr1_1:63395049-63395068 | Msa0035270:intron | 25.0% |
| ! | ATCTATTTCAAGAAAACAGT+CGG | - | chr1_1:63395179-63395198 | Msa0035270:intron | 25.0% |
| ! | CTACACAAATAATAACACAA+TGG | + | chr1_1:63395592-63395611 | None:intergenic | 25.0% |
| ! | TTATGTGTAAGAGTAATTGA+TGG | + | chr1_1:63395901-63395920 | None:intergenic | 25.0% |
| ! | CAGTAAATTAGAATTATCTG+CGG | + | chr1_1:63396844-63396863 | None:intergenic | 25.0% |
| !!! | TTTAACTTTTTGTTTCCAAG+GGG | + | chr1_1:63396885-63396904 | None:intergenic | 25.0% |
| !!! | CTTTAACTTTTTGTTTCCAA+GGG | + | chr1_1:63396886-63396905 | None:intergenic | 25.0% |
| ! | TTATCACCACTAAGAAAATT+TGG | - | chr1_1:63397054-63397073 | Msa0035270:intron | 25.0% |
| ! | TATCACCACTAAGAAAATTT+GGG | - | chr1_1:63397055-63397074 | Msa0035270:intron | 25.0% |
| ! | TAAACGATTCTGTATTGTAT+GGG | + | chr1_1:63397237-63397256 | None:intergenic | 25.0% |
| ! | ATAAACGATTCTGTATTGTA+TGG | + | chr1_1:63397238-63397257 | None:intergenic | 25.0% |
| !!! | TCAATTTCTTTTAACTAGAG+AGG | + | chr1_1:63397880-63397899 | None:intergenic | 25.0% |
| ATGATGCATTCTGTTGTAAA+AGG | - | chr1_1:63394786-63394805 | Msa0035270:intron | 30.0% | |
| ! | ATTCTGAAGGGAAAAAATCT+CGG | - | chr1_1:63394847-63394866 | Msa0035270:CDS | 30.0% |
| ! | ACTCATGTTTTACTACTTTC+TGG | - | chr1_1:63394942-63394961 | Msa0035270:intron | 30.0% |
| TTCTGATAGATAGAAGAAGA+TGG | - | chr1_1:63395091-63395110 | Msa0035270:intron | 30.0% | |
| TCTGATAGATAGAAGAAGAT+GGG | - | chr1_1:63395092-63395111 | Msa0035270:intron | 30.0% | |
| TGAATTGAAAGAAGCAATAC+CGG | - | chr1_1:63395219-63395238 | Msa0035270:intron | 30.0% | |
| ! | TTTTAGCCTAAGTTTGATAC+AGG | - | chr1_1:63395255-63395274 | Msa0035270:CDS | 30.0% |
| !! | CTAATGGATTAAAGAAGTTG+TGG | + | chr1_1:63395504-63395523 | None:intergenic | 30.0% |
| AAATAATAACACAATGGGAG+GGG | + | chr1_1:63395586-63395605 | None:intergenic | 30.0% | |
| CAAATAATAACACAATGGGA+GGG | + | chr1_1:63395587-63395606 | None:intergenic | 30.0% | |
| ACAAATAATAACACAATGGG+AGG | + | chr1_1:63395588-63395607 | None:intergenic | 30.0% | |
| CTATATAGTTACTTGTCTTC+AGG | - | chr1_1:63395848-63395867 | Msa0035270:CDS | 30.0% | |
| ACTCTTACACATAAAGAAGT+CGG | - | chr1_1:63395907-63395926 | Msa0035270:CDS | 30.0% | |
| AATTCAAGAAAATAGAGTGC+TGG | - | chr1_1:63395969-63395988 | Msa0035270:CDS | 30.0% | |
| ! | ATTCAAGAAAATAGAGTGCT+GGG | - | chr1_1:63395970-63395989 | Msa0035270:CDS | 30.0% |
| !!! | ATTTTTAGAACAAAACCCGT+TGG | - | chr1_1:63396032-63396051 | Msa0035270:CDS | 30.0% |
| !!! | TTTTTAGAACAAAACCCGTT+GGG | - | chr1_1:63396033-63396052 | Msa0035270:CDS | 30.0% |
| AAGAAAGTTCCAGATACAAA+TGG | - | chr1_1:63396120-63396139 | Msa0035270:CDS | 30.0% | |
| CTTCTTTATATCCTTCTCTA+AGG | + | chr1_1:63396775-63396794 | None:intergenic | 30.0% | |
| AGAGAAGGATATAAAGAAGT+TGG | - | chr1_1:63396776-63396795 | Msa0035270:intron | 30.0% | |
| CGCAGATAATTCTAATTTAC+TGG | - | chr1_1:63396842-63396861 | Msa0035270:intron | 30.0% | |
| !! | CCTTTAACTTTTTGTTTCCA+AGG | + | chr1_1:63396887-63396906 | None:intergenic | 30.0% |
| CCTTGGAAACAAAAAGTTAA+AGG | - | chr1_1:63396884-63396903 | Msa0035270:intron | 30.0% | |
| TGAAACATATAACCAAAGTC+AGG | - | chr1_1:63396998-63397017 | Msa0035270:intron | 30.0% | |
| ATCACCACTAAGAAAATTTG+GGG | - | chr1_1:63397056-63397075 | Msa0035270:intron | 30.0% | |
| ! | GGAAGTAGTTTATATGCTTT+TGG | - | chr1_1:63397078-63397097 | Msa0035270:intron | 30.0% |
| CAAGAAAACACAACACAAAT+CGG | + | chr1_1:63397152-63397171 | None:intergenic | 30.0% | |
| ATAAATTGATGCAGTTACTG+AGG | + | chr1_1:63397184-63397203 | None:intergenic | 30.0% | |
| TCTGAAAATATTCAGACTCA+TGG | - | chr1_1:63397209-63397228 | Msa0035270:intron | 30.0% | |
| TATATTTATCAGCTTCATGC+AGG | + | chr1_1:63397369-63397388 | None:intergenic | 30.0% | |
| TGCATGAAGCTGATAAATAT+AGG | - | chr1_1:63397368-63397387 | Msa0035270:CDS | 30.0% | |
| ATCCAAGAATTCAGCAAAAA+AGG | - | chr1_1:63397593-63397612 | Msa0035270:intron | 30.0% | |
| !!! | TTCCTTTTTTGCTGAATTCT+TGG | + | chr1_1:63397598-63397617 | None:intergenic | 30.0% |
| TTCTGACAAAAATTTCCCAA+AGG | + | chr1_1:63397661-63397680 | None:intergenic | 30.0% | |
| !! | AAAATTTTAGAAAGGGGGAA+GGG | + | chr1_1:63397796-63397815 | None:intergenic | 30.0% |
| !! | TAAAATTTTAGAAAGGGGGA+AGG | + | chr1_1:63397797-63397816 | None:intergenic | 30.0% |
| !!! | TGATCTTGTTTTGATTGACT+TGG | - | chr1_1:63397825-63397844 | Msa0035270:five_prime_UTR | 30.0% |
| TAAATAAGTATCCGGGACTT+GGG | + | chr1_1:63394632-63394651 | None:intergenic | 35.0% | |
| TTAAATAAGTATCCGGGACT+TGG | + | chr1_1:63394633-63394652 | None:intergenic | 35.0% | |
| GATATGTTATGTAACCACTC+TGG | - | chr1_1:63394710-63394729 | Msa0035270:intron | 35.0% | |
| ATACAAAGTAACCTGCATAC+AGG | + | chr1_1:63394742-63394761 | None:intergenic | 35.0% | |
| ATGCATTCTGTTGTAAAAGG+TGG | - | chr1_1:63394789-63394808 | Msa0035270:intron | 35.0% | |
| ATTCTGTTGTAAAAGGTGGT+TGG | - | chr1_1:63394793-63394812 | Msa0035270:intron | 35.0% | |
| CCAAGCAAAATGATTCTGAA+GGG | - | chr1_1:63394835-63394854 | Msa0035270:CDS | 35.0% | |
| TAAAGAGGAAAGAAAGGCAA+TGG | - | chr1_1:63394881-63394900 | Msa0035270:CDS | 35.0% | |
| ! | TCTGGCGAATGTTTTATGTT+TGG | - | chr1_1:63394960-63394979 | Msa0035270:intron | 35.0% |
| CTAAAACATAGCACATTAGC+CGG | + | chr1_1:63395241-63395260 | None:intergenic | 35.0% | |
| ATCACTCCTGTATCAAACTT+AGG | + | chr1_1:63395264-63395283 | None:intergenic | 35.0% | |
| ! | CATTTTGTATGCGTGTATGT+TGG | - | chr1_1:63395379-63395398 | Msa0035270:CDS | 35.0% |
| CAATTAATAACAGCCAGCAT+GGG | + | chr1_1:63395540-63395559 | None:intergenic | 35.0% | |
| TCAATTAATAACAGCCAGCA+TGG | + | chr1_1:63395541-63395560 | None:intergenic | 35.0% | |
| TATCAGAAACAGAAAGCAGT+GGG | + | chr1_1:63396146-63396165 | None:intergenic | 35.0% | |
| TTATCAGAAACAGAAAGCAG+TGG | + | chr1_1:63396147-63396166 | None:intergenic | 35.0% | |
| AGATGTTGGCCATTTAGATT+TGG | - | chr1_1:63396215-63396234 | Msa0035270:CDS | 35.0% | |
| CCTTGTTAGCCAAATCTAAA+TGG | + | chr1_1:63396227-63396246 | None:intergenic | 35.0% | |
| CCATTTAGATTTGGCTAACA+AGG | - | chr1_1:63396224-63396243 | Msa0035270:CDS | 35.0% | |
| TTATACTGAAACTGAGCATC+AGG | - | chr1_1:63396281-63396300 | Msa0035270:CDS | 35.0% | |
| ATCAGAAACAACAGAAGCTT+CGG | + | chr1_1:63396367-63396386 | None:intergenic | 35.0% | |
| !! | AAGCTTCTGTTGTTTCTGAT+GGG | - | chr1_1:63396367-63396386 | Msa0035270:intron | 35.0% |
| AGCTTGAGATTGTTGACAAA+GGG | - | chr1_1:63396520-63396539 | Msa0035270:intron | 35.0% | |
| TCAGGTATAGTAGCTTCAAT+GGG | + | chr1_1:63396588-63396607 | None:intergenic | 35.0% | |
| ! | TACTTTAGCCAATGGTAATG+TGG | + | chr1_1:63396646-63396665 | None:intergenic | 35.0% |
| ! | AGAGCATTTACTTTAGCCAA+TGG | + | chr1_1:63396654-63396673 | None:intergenic | 35.0% |
| ! | TTCCATTGAGATCTGTTTCT+AGG | - | chr1_1:63396700-63396719 | Msa0035270:intron | 35.0% |
| TTCCTAGAAACAGATCTCAA+TGG | + | chr1_1:63396705-63396724 | None:intergenic | 35.0% | |
| !! | TCTGTTTCTAGGAATAGCAA+TGG | - | chr1_1:63396711-63396730 | Msa0035270:intron | 35.0% |
| AGGAATAGCAATGGAATAGA+AGG | - | chr1_1:63396720-63396739 | Msa0035270:intron | 35.0% | |
| TAAAAAGGCTAACCTGACTT+TGG | + | chr1_1:63397013-63397032 | None:intergenic | 35.0% | |
| TCACCACTAAGAAAATTTGG+GGG | - | chr1_1:63397057-63397076 | Msa0035270:intron | 35.0% | |
| !! | ACTTTCTTTCTAGTTATGGG+AGG | - | chr1_1:63397279-63397298 | Msa0035270:intron | 35.0% |
| GCTGATAAATATAGGCTTGA+TGG | - | chr1_1:63397376-63397395 | Msa0035270:CDS | 35.0% | |
| !! | AGTTGTGTTGATTCTTCTCT+GGG | + | chr1_1:63397419-63397438 | None:intergenic | 35.0% |
| GAATCAACACAACTGTAGAT+AGG | - | chr1_1:63397425-63397444 | Msa0035270:CDS | 35.0% | |
| AGCTAACTTGACCTTTCTAA+TGG | - | chr1_1:63397541-63397560 | Msa0035270:intron | 35.0% | |
| AATAGAGCGAAAAGAGGATT+GGG | + | chr1_1:63397621-63397640 | None:intergenic | 35.0% | |
| ATGTGAAGTTATTCTTCAGC+AGG | + | chr1_1:63397758-63397777 | None:intergenic | 35.0% | |
| TGCTGAAGAATAACTTCACA+TGG | - | chr1_1:63397757-63397776 | Msa0035270:intron | 35.0% | |
| !! | AAATTTTAGAAAGGGGGAAG+GGG | + | chr1_1:63397795-63397814 | None:intergenic | 35.0% |
| !!! | TTTTGATTGACTTGGTTGTG+TGG | - | chr1_1:63397833-63397852 | Msa0035270:five_prime_UTR | 35.0% |
| GTGTGAAATCAGTGTGAAGA+AGG | + | chr1_1:63394395-63394414 | None:intergenic | 40.0% | |
| TACCTCGAAGAAGAAGAAGA+GGG | + | chr1_1:63394422-63394441 | None:intergenic | 40.0% | |
| ATACCTCGAAGAAGAAGAAG+AGG | + | chr1_1:63394423-63394442 | None:intergenic | 40.0% | |
| TCTTCTTCTTCTTCGAGGTA+TGG | - | chr1_1:63394422-63394441 | Msa0035270:three_prime_UTR | 40.0% | |
| AAATTATGGGCGACAGACTT+AGG | + | chr1_1:63394566-63394585 | None:intergenic | 40.0% | |
| GCCAAGCAAAATGATTCTGA+AGG | - | chr1_1:63394834-63394853 | Msa0035270:CDS | 40.0% | |
| ! | CCCTTCAGAATCATTTTGCT+TGG | + | chr1_1:63394838-63394857 | None:intergenic | 40.0% |
| !! | ACGCTCTAAAGAGGAAAGAA+AGG | - | chr1_1:63394875-63394894 | Msa0035270:CDS | 40.0% |
| GATAGATAGAAGAAGATGGG+AGG | - | chr1_1:63395095-63395114 | Msa0035270:intron | 40.0% | |
| AATGTCCAAGGTTCAAGTCT+GGG | + | chr1_1:63395476-63395495 | None:intergenic | 40.0% | |
| AAATGTCCAAGGTTCAAGTC+TGG | + | chr1_1:63395477-63395496 | None:intergenic | 40.0% | |
| GTTGTGGAGTTAAATGTCCA+AGG | + | chr1_1:63395488-63395507 | None:intergenic | 40.0% | |
| AGAACGTAGATCTGTGTGAA+TGG | - | chr1_1:63395612-63395631 | Msa0035270:CDS | 40.0% | |
| AGTTTCCACTGTTTGACTCT+TGG | + | chr1_1:63395876-63395895 | None:intergenic | 40.0% | |
| CTTACACATAAAGAAGTCGG+TGG | - | chr1_1:63395910-63395929 | Msa0035270:CDS | 40.0% | |
| TGGCTCTTTCTACACTGTAA+GGG | - | chr1_1:63395930-63395949 | Msa0035270:CDS | 40.0% | |
| ACACTGTAAGGGAGATTGTA+CGG | - | chr1_1:63395941-63395960 | Msa0035270:CDS | 40.0% | |
| TCCTGCTAAATTCAACTTGC+AGG | - | chr1_1:63395993-63396012 | Msa0035270:CDS | 40.0% | |
| ! | TCCTGCAAGTTGAATTTAGC+AGG | + | chr1_1:63395997-63396016 | None:intergenic | 40.0% |
| ATGCACCGAGAAAATGTTCA+GGG | + | chr1_1:63396074-63396093 | None:intergenic | 40.0% | |
| GAACTTTCTTGAGTTCAGGA+TGG | + | chr1_1:63396110-63396129 | None:intergenic | 40.0% | |
| ! | TCTGGAACTTTCTTGAGTTC+AGG | + | chr1_1:63396114-63396133 | None:intergenic | 40.0% |
| TTATACTGAAGCTGAGCATC+AGG | - | chr1_1:63396170-63396189 | Msa0035270:CDS | 40.0% | |
| AGACACAACAGTTGCTTCAA+TGG | + | chr1_1:63396253-63396272 | None:intergenic | 40.0% | |
| ! | TGTTGTTTGTCACATCGACA+TGG | + | chr1_1:63396338-63396357 | None:intergenic | 40.0% |
| !! | GAAGCTTCTGTTGTTTCTGA+TGG | - | chr1_1:63396366-63396385 | Msa0035270:CDS | 40.0% |
| ! | GTTTCTGATGGGCATTATAC+TGG | - | chr1_1:63396378-63396397 | Msa0035270:intron | 40.0% |
| TTTGTCAACAACCTTGAGCT+CGG | + | chr1_1:63396406-63396425 | None:intergenic | 40.0% | |
| AGCTCAAGGTTGTTGACAAA+GGG | - | chr1_1:63396406-63396425 | Msa0035270:intron | 40.0% | |
| AGAAACAACCGAAGCTTCAA+CGG | + | chr1_1:63396475-63396494 | None:intergenic | 40.0% | |
| GAGCTTGAGATTGTTGACAA+AGG | - | chr1_1:63396519-63396538 | Msa0035270:intron | 40.0% | |
| CTCAGGTATAGTAGCTTCAA+TGG | + | chr1_1:63396589-63396608 | None:intergenic | 40.0% | |
| AGCAATGGAATAGAAGGTTC+AGG | - | chr1_1:63396726-63396745 | Msa0035270:intron | 40.0% | |
| TAGAAGGTTCAGGAGAATTG+AGG | - | chr1_1:63396736-63396755 | Msa0035270:intron | 40.0% | |
| AGAAGGTTCAGGAGAATTGA+GGG | - | chr1_1:63396737-63396756 | Msa0035270:intron | 40.0% | |
| CTCTGGTAATTCCTTAGAGA+AGG | - | chr1_1:63396761-63396780 | Msa0035270:intron | 40.0% | |
| TAAAGGAAATCTCCAACCCT+AGG | - | chr1_1:63396901-63396920 | Msa0035270:intron | 40.0% | |
| !! | TGCACTGACTTGTTCTTTGT+GGG | + | chr1_1:63396955-63396974 | None:intergenic | 40.0% |
| !! | ATGCACTGACTTGTTCTTTG+TGG | + | chr1_1:63396956-63396975 | None:intergenic | 40.0% |
| ! | CTTCCCCCAAATTTTCTTAG+TGG | + | chr1_1:63397063-63397082 | None:intergenic | 40.0% |
| ! | TATAGGCTTGATGGTCAACT+TGG | - | chr1_1:63397385-63397404 | Msa0035270:CDS | 40.0% |
| !! | CAGTTGTGTTGATTCTTCTC+TGG | + | chr1_1:63397420-63397439 | None:intergenic | 40.0% |
| CTGCAGTGAAACCATTAGAA+AGG | + | chr1_1:63397555-63397574 | None:intergenic | 40.0% | |
| CAATAGAGCGAAAAGAGGAT+TGG | + | chr1_1:63397622-63397641 | None:intergenic | 40.0% | |
| GCTTTCAATAGAGCGAAAAG+AGG | + | chr1_1:63397627-63397646 | None:intergenic | 40.0% | |
| AAAGCCATTGTCAATGCCTT+TGG | - | chr1_1:63397642-63397661 | Msa0035270:intron | 40.0% | |
| AAGCCATTGTCAATGCCTTT+GGG | - | chr1_1:63397643-63397662 | Msa0035270:intron | 40.0% | |
| !! | TTTCCCAAAGGCATTGACAA+TGG | + | chr1_1:63397649-63397668 | None:intergenic | 40.0% |
| ! | GCTATTATCTACGCTGATTG+TGG | - | chr1_1:63397717-63397736 | Msa0035270:intron | 40.0% |
| GTTGTGTGGTATGACTATGA+GGG | - | chr1_1:63397847-63397866 | Msa0035270:five_prime_UTR | 40.0% | |
| ACGCTACTCGACAATAGTGA+CGG | + | chr1_1:63394345-63394364 | None:intergenic | 45.0% | |
| ! | GTAGCGAGGGTTTGGATTTT+GGG | - | chr1_1:63394363-63394382 | Msa0035270:three_prime_UTR | 45.0% |
| ! | TAGCGAGGGTTTGGATTTTG+GGG | - | chr1_1:63394364-63394383 | Msa0035270:three_prime_UTR | 45.0% |
| TTCCCTCTTCTTCTTCTTCG+AGG | - | chr1_1:63394417-63394436 | Msa0035270:three_prime_UTR | 45.0% | |
| ! | GGGTACTGCAGATGAATTTG+AGG | + | chr1_1:63394527-63394546 | None:intergenic | 45.0% |
| CTACAAACTAACCCAAGTCC+CGG | - | chr1_1:63394618-63394637 | Msa0035270:CDS | 45.0% | |
| !! | CATACAGGAAGTATCCAGAG+TGG | + | chr1_1:63394727-63394746 | None:intergenic | 45.0% |
| TCTGGATACTTCCTGTATGC+AGG | - | chr1_1:63394728-63394747 | Msa0035270:intron | 45.0% | |
| CTGTTGTAAAAGGTGGTTGG+AGG | - | chr1_1:63394796-63394815 | Msa0035270:intron | 45.0% | |
| TGCTTGGCAAGAGCAAATGT+TGG | + | chr1_1:63394822-63394841 | None:intergenic | 45.0% | |
| AGATAGAAGAAGATGGGAGG+CGG | - | chr1_1:63395098-63395117 | Msa0035270:intron | 45.0% | |
| TAATAACAGCCAGCATGGGT+GGG | + | chr1_1:63395536-63395555 | None:intergenic | 45.0% | |
| TTAATAACAGCCAGCATGGG+TGG | + | chr1_1:63395537-63395556 | None:intergenic | 45.0% | |
| AGGTACCAAGAGTCAAACAG+TGG | - | chr1_1:63395868-63395887 | Msa0035270:CDS | 45.0% | |
| GTGGCTCTTTCTACACTGTA+AGG | - | chr1_1:63395929-63395948 | Msa0035270:CDS | 45.0% | |
| CACTGTAAGGGAGATTGTAC+GGG | - | chr1_1:63395942-63395961 | Msa0035270:CDS | 45.0% | |
| CACTTGCAATTGAACCCAAC+GGG | + | chr1_1:63396050-63396069 | None:intergenic | 45.0% | |
| CCACTTGCAATTGAACCCAA+CGG | + | chr1_1:63396051-63396070 | None:intergenic | 45.0% | |
| ! | AGTGGCCCTGAACATTTTCT+CGG | - | chr1_1:63396066-63396085 | Msa0035270:CDS | 45.0% |
| GATGCACCGAGAAAATGTTC+AGG | + | chr1_1:63396075-63396094 | None:intergenic | 45.0% | |
| ! | CTCGGTGCATCATCAAATGA+AGG | - | chr1_1:63396084-63396103 | Msa0035270:CDS | 45.0% |
| GATGGGCATGTCATAGATGT+TGG | - | chr1_1:63396201-63396220 | Msa0035270:CDS | 45.0% | |
| TACTGAAACTGAGCATCAGG+TGG | - | chr1_1:63396284-63396303 | Msa0035270:CDS | 45.0% | |
| AGCATCAGGTGGTTGACAAT+GGG | - | chr1_1:63396295-63396314 | Msa0035270:CDS | 45.0% | |
| GACAATGGGCATGTCGTAAA+TGG | - | chr1_1:63396309-63396328 | Msa0035270:CDS | 45.0% | |
| TTATACTGGAACCGAGCTCA+AGG | - | chr1_1:63396392-63396411 | Msa0035270:intron | 45.0% | |
| GAGCTCAAGGTTGTTGACAA+AGG | - | chr1_1:63396405-63396424 | Msa0035270:intron | 45.0% | |
| ! | CCTTGTTTGTCATGTCTACC+TGG | + | chr1_1:63396449-63396468 | None:intergenic | 45.0% |
| CCAGGTAGACATGACAAACA+AGG | - | chr1_1:63396446-63396465 | Msa0035270:intron | 45.0% | |
| CAAGGAATCCGTTGAAGCTT+CGG | - | chr1_1:63396464-63396483 | Msa0035270:intron | 45.0% | |
| GAGATTGTTGACAAAGGGCA+TGG | - | chr1_1:63396525-63396544 | Msa0035270:intron | 45.0% | |
| CGCGGTAGATGTGATAAACA+AGG | - | chr1_1:63396560-63396579 | Msa0035270:intron | 45.0% | |
| AGCTACTATACCTGAGATGC+AGG | - | chr1_1:63396593-63396612 | Msa0035270:intron | 45.0% | |
| GGTTTACTTACCTGCATCTC+AGG | + | chr1_1:63396606-63396625 | None:intergenic | 45.0% | |
| GGTAAGTAAACCCACAGAGT+TGG | - | chr1_1:63396614-63396633 | Msa0035270:intron | 45.0% | |
| GAGAAATTTGAGAGTCCCCT+TGG | - | chr1_1:63396867-63396886 | Msa0035270:intron | 45.0% | |
| CACTTTCCGTATCATGCCTA+GGG | + | chr1_1:63396920-63396939 | None:intergenic | 45.0% | |
| GATGCAGTTACTGAGGTATG+AGG | + | chr1_1:63397177-63397196 | None:intergenic | 45.0% | |
| GTTTCACTGCAGAGAGTCAT+GGG | - | chr1_1:63397563-63397582 | Msa0035270:intron | 45.0% | |
| GGTTGTGTGGTATGACTATG+AGG | - | chr1_1:63397846-63397865 | Msa0035270:five_prime_UTR | 45.0% | |
| !!! | ATAAATTTTAAAAAGTAAAA+GGG | + | chr1_1:63395025-63395044 | None:intergenic | 5.0% |
| !!! | TAATTTTAAAAACTAAATTA+TGG | + | chr1_1:63397037-63397056 | None:intergenic | 5.0% |
| TATTGTCGAGTAGCGTAGCG+AGG | - | chr1_1:63394349-63394368 | Msa0035270:three_prime_UTR | 50.0% | |
| ATTGTCGAGTAGCGTAGCGA+GGG | - | chr1_1:63394350-63394369 | Msa0035270:three_prime_UTR | 50.0% | |
| ! | CGTAGCGAGGGTTTGGATTT+TGG | - | chr1_1:63394362-63394381 | Msa0035270:three_prime_UTR | 50.0% |
| !! | TCGGATTCGACGCTCTAAAG+AGG | - | chr1_1:63394866-63394885 | Msa0035270:CDS | 50.0% |
| CCGTTGGGTTCAATTGCAAG+TGG | - | chr1_1:63396048-63396067 | Msa0035270:CDS | 50.0% | |
| AGCAGTGGGCCATTTGTATC+TGG | + | chr1_1:63396132-63396151 | None:intergenic | 50.0% | |
| TACTGAAGCTGAGCATCAGG+TGG | - | chr1_1:63396173-63396192 | Msa0035270:CDS | 50.0% | |
| AGCATCAGGTGGTTGACGAT+GGG | - | chr1_1:63396184-63396203 | Msa0035270:CDS | 50.0% | |
| GAGCATCAGGTGGTTGACAA+TGG | - | chr1_1:63396294-63396313 | Msa0035270:CDS | 50.0% | |
| GGCAGCTACCACATTACCAT+TGG | - | chr1_1:63396635-63396654 | Msa0035270:intron | 50.0% | |
| TCAGGAGAATTGAGGGACTC+TGG | - | chr1_1:63396744-63396763 | Msa0035270:intron | 50.0% | |
| CTCCAACCCTAGGCATGATA+CGG | - | chr1_1:63396911-63396930 | Msa0035270:intron | 50.0% | |
| TTCCGTATCATGCCTAGGGT+TGG | + | chr1_1:63396916-63396935 | None:intergenic | 50.0% | |
| GCACTTTCCGTATCATGCCT+AGG | + | chr1_1:63396921-63396940 | None:intergenic | 50.0% | |
| ! | AGGCTTGATGGTCAACTTGG+TGG | - | chr1_1:63397388-63397407 | Msa0035270:CDS | 50.0% |
| GGTTTCACTGCAGAGAGTCA+TGG | - | chr1_1:63397562-63397581 | Msa0035270:intron | 50.0% | |
| TGTGGTATGACTATGAGGGC+AGG | - | chr1_1:63397851-63397870 | Msa0035270:five_prime_UTR | 50.0% | |
| GTGGTATGACTATGAGGGCA+GGG | - | chr1_1:63397852-63397871 | Msa0035270:five_prime_UTR | 50.0% | |
| CCAAGGTTCAAGTCTGGGCA+AGG | + | chr1_1:63395471-63395490 | None:intergenic | 55.0% | |
| CCTTGCCCAGACTTGAACCT+TGG | - | chr1_1:63395468-63395487 | Msa0035270:CDS | 55.0% | |
| GGGTGGGCAGTTTGAGCTAA+TGG | + | chr1_1:63395520-63395539 | None:intergenic | 55.0% | |
| GAGCATCAGGTGGTTGACGA+TGG | - | chr1_1:63396183-63396202 | Msa0035270:CDS | 55.0% | |
| GCGCAGCATAGATACTAGCC+AGG | - | chr1_1:63396428-63396447 | Msa0035270:intron | 55.0% | |
| ! | GACAAAGGGCATGGCATCGA+TGG | - | chr1_1:63396534-63396553 | Msa0035270:intron | 55.0% |
| GTGGTAGCTGCCAACTCTGT+GGG | + | chr1_1:63396627-63396646 | None:intergenic | 55.0% | |
| TGTGGTAGCTGCCAACTCTG+TGG | + | chr1_1:63396628-63396647 | None:intergenic | 55.0% | |
| CGAGTAGCGTAGCGAGGGTT+TGG | - | chr1_1:63394355-63394374 | Msa0035270:three_prime_UTR | 60.0% | |
| CTCAAACTGCCCACCCATGC+TGG | - | chr1_1:63395524-63395543 | Msa0035270:CDS | 60.0% | |
| !! | GCATGGCATCGATGGCAGCG+CGG | - | chr1_1:63396542-63396561 | Msa0035270:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 63394338 | 63397917 | 63394338 | ID=Msa0035270;Name=Msa0035270 |
| chr1_1 | mRNA | 63394338 | 63397917 | 63394338 | ID=Msa0035270-mRNA-1;Parent=Msa0035270;Name=Msa0035270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=137|1|1|1|0.75|0.8|5|234|501 |
| chr1_1 | exon | 63394338 | 63394680 | 63394338 | ID=Msa0035270-mRNA-1:exon:20167;Parent=Msa0035270-mRNA-1 |
| chr1_1 | exon | 63394800 | 63394909 | 63394800 | ID=Msa0035270-mRNA-1:exon:20166;Parent=Msa0035270-mRNA-1 |
| chr1_1 | exon | 63395236 | 63396385 | 63395236 | ID=Msa0035270-mRNA-1:exon:20165;Parent=Msa0035270-mRNA-1 |
| chr1_1 | exon | 63397333 | 63397505 | 63397333 | ID=Msa0035270-mRNA-1:exon:20164;Parent=Msa0035270-mRNA-1 |
| chr1_1 | exon | 63397817 | 63397917 | 63397817 | ID=Msa0035270-mRNA-1:exon:20163;Parent=Msa0035270-mRNA-1 |
| chr1_1 | five_prime_UTR | 63397817 | 63397917 | 63397817 | ID=Msa0035270-mRNA-1:five_prime_utr;Parent=Msa0035270-mRNA-1 |
| chr1_1 | five_prime_UTR | 63397470 | 63397505 | 63397470 | ID=Msa0035270-mRNA-1:five_prime_utr;Parent=Msa0035270-mRNA-1 |
| chr1_1 | CDS | 63397333 | 63397469 | 63397333 | ID=Msa0035270-mRNA-1:cds;Parent=Msa0035270-mRNA-1 |
| chr1_1 | CDS | 63395236 | 63396385 | 63395236 | ID=Msa0035270-mRNA-1:cds;Parent=Msa0035270-mRNA-1 |
| chr1_1 | CDS | 63394800 | 63394909 | 63394800 | ID=Msa0035270-mRNA-1:cds;Parent=Msa0035270-mRNA-1 |
| chr1_1 | CDS | 63394572 | 63394680 | 63394572 | ID=Msa0035270-mRNA-1:cds;Parent=Msa0035270-mRNA-1 |
| chr1_1 | three_prime_UTR | 63394338 | 63394571 | 63394338 | ID=Msa0035270-mRNA-1:three_prime_utr;Parent=Msa0035270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
