Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747000 | XP_013469313.1 | 91.262 | 515 | 39 | 1 | 1 | 509 | 1 | 515 | 0.0 | 946 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747000 | A0A072VP11 | 91.262 | 515 | 39 | 1 | 1 | 509 | 1 | 515 | 0.0 | 946 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa0747000 | 0.846782 | 1.749618e-59 | -8.615850e-47 |
| Msa0014770 | Msa0747000 | 0.804525 | 2.071558e-49 | -8.615850e-47 |
| Msa0015570 | Msa0747000 | 0.805111 | 1.563219e-49 | -8.615850e-47 |
| Msa0025160 | Msa0747000 | 0.835680 | 1.457344e-56 | -8.615850e-47 |
| Msa0025580 | Msa0747000 | 0.820871 | 5.454294e-53 | -8.615850e-47 |
| Msa0032460 | Msa0747000 | 0.826289 | 2.943195e-54 | -8.615850e-47 |
| Msa0035270 | Msa0747000 | 0.890063 | 1.381555e-73 | -8.615850e-47 |
| Msa0035340 | Msa0747000 | 0.911455 | 5.965629e-83 | -8.615850e-47 |
| Msa0035380 | Msa0747000 | 0.940887 | 1.079950e-100 | -8.615850e-47 |
| Msa0038530 | Msa0747000 | 0.810372 | 1.191385e-50 | -8.615850e-47 |
| Msa0050660 | Msa0747000 | 0.808453 | 3.074833e-50 | -8.615850e-47 |
| Msa0050700 | Msa0747000 | 0.808722 | 2.693287e-50 | -8.615850e-47 |
| Msa0050790 | Msa0747000 | 0.803476 | 3.423664e-49 | -8.615850e-47 |
| Msa0067060 | Msa0747000 | 0.807155 | 5.803123e-50 | -8.615850e-47 |
| Msa0072520 | Msa0747000 | 0.822606 | 2.165312e-53 | -8.615850e-47 |
| Msa0073120 | Msa0747000 | 0.816757 | 4.690837e-52 | -8.615850e-47 |
| Msa0098410 | Msa0747000 | 0.800327 | 1.518105e-48 | -8.615850e-47 |
| Msa0108630 | Msa0747000 | 0.802736 | 4.868695e-49 | -8.615850e-47 |
| Msa0607800 | Msa0747000 | 0.813263 | 2.795877e-51 | -8.615850e-47 |
| Msa0612520 | Msa0747000 | 0.802660 | 5.048278e-49 | -8.615850e-47 |
| Msa0619710 | Msa0747000 | 0.863411 | 2.538562e-64 | -8.615850e-47 |
| Msa0620500 | Msa0747000 | 0.801559 | 8.505527e-49 | -8.615850e-47 |
| Msa0625620 | Msa0747000 | 0.821374 | 4.177205e-53 | -8.615850e-47 |
| Msa0630660 | Msa0747000 | 0.807802 | 4.231068e-50 | -8.615850e-47 |
| Msa0648040 | Msa0747000 | 0.804522 | 2.074736e-49 | -8.615850e-47 |
| Msa0668900 | Msa0747000 | 0.815946 | 7.122339e-52 | -8.615850e-47 |
| Msa0687090 | Msa0747000 | 0.851634 | 7.809870e-61 | -8.615850e-47 |
| Msa0690740 | Msa0747000 | 0.810667 | 1.028755e-50 | -8.615850e-47 |
| Msa0698730 | Msa0747000 | 0.803196 | 3.911917e-49 | -8.615850e-47 |
| Msa0706150 | Msa0747000 | 0.851692 | 7.522885e-61 | -8.615850e-47 |
| Msa0736890 | Msa0747000 | 0.810687 | 1.018275e-50 | -8.615850e-47 |
| Msa0747000 | Msa0780910 | 0.810939 | 8.984167e-51 | -8.615850e-47 |
| Msa0747000 | Msa0837460 | 0.801101 | 1.055487e-48 | -8.615850e-47 |
| Msa0747000 | Msa0909760 | 0.812374 | 4.377845e-51 | -8.615850e-47 |
| Msa0747000 | Msa0956350 | 0.810052 | 1.396045e-50 | -8.615850e-47 |
| Msa0747000 | Msa1025560 | 0.805701 | 1.175789e-49 | -8.615850e-47 |
| Msa0747000 | Msa1034600 | 0.834414 | 3.039181e-56 | -8.615850e-47 |
| Msa0747000 | Msa1042160 | 0.811852 | 5.689294e-51 | -8.615850e-47 |
| Msa0747000 | Msa1042190 | 0.814982 | 1.167368e-51 | -8.615850e-47 |
| Msa0747000 | Msa1059020 | 0.806091 | 9.732963e-50 | -8.615850e-47 |
| Msa0747000 | Msa1064370 | 0.806299 | 8.799155e-50 | -8.615850e-47 |
| Msa0747000 | Msa1076820 | 0.808280 | 3.347372e-50 | -8.615850e-47 |
| Msa0747000 | Msa1078820 | 0.807052 | 6.102234e-50 | -8.615850e-47 |
| Msa0747000 | Msa1078880 | 0.804357 | 2.246226e-49 | -8.615850e-47 |
| Msa0747000 | Msa1078970 | 0.805951 | 1.041632e-49 | -8.615850e-47 |
| Msa0747000 | Msa1080000 | 0.805116 | 1.559119e-49 | -8.615850e-47 |
| Msa0747000 | Msa1105640 | 0.802710 | 4.931140e-49 | -8.615850e-47 |
| Msa0747000 | Msa1123970 | 0.804464 | 2.133537e-49 | -8.615850e-47 |
| Msa0747000 | Msa1147700 | 0.801338 | 9.436630e-49 | -8.615850e-47 |
| Msa0747000 | Msa1166190 | 0.808594 | 2.868945e-50 | -8.615850e-47 |
| Msa0747000 | Msa1166290 | 0.804263 | 2.349100e-49 | -8.615850e-47 |
| Msa0747000 | Msa1167470 | 0.816923 | 4.305056e-52 | -8.615850e-47 |
| Msa0747000 | Msa1169190 | 0.805216 | 1.485927e-49 | -8.615850e-47 |
| Msa0747000 | Msa1169650 | 0.807175 | 5.745583e-50 | -8.615850e-47 |
| Msa0747000 | Msa1215980 | 0.802186 | 6.323103e-49 | -8.615850e-47 |
| Msa0747000 | Msa1217050 | 0.801198 | 1.008025e-48 | -8.615850e-47 |
| Msa0747000 | Msa1228630 | 0.807195 | 5.690895e-50 | -8.615850e-47 |
| Msa0747000 | Msa1240770 | 0.816420 | 5.582119e-52 | -8.615850e-47 |
| Msa0747000 | Msa1242130 | 0.802302 | 5.984737e-49 | -8.615850e-47 |
| Msa0747000 | Msa1250610 | 0.813108 | 3.023995e-51 | -8.615850e-47 |
| Msa0747000 | Msa1254540 | 0.815892 | 7.325215e-52 | -8.615850e-47 |
| Msa0747000 | Msa1262590 | 0.824381 | 8.325545e-54 | -8.615850e-47 |
| Msa0747000 | Msa1263780 | 0.801110 | 1.050890e-48 | -8.615850e-47 |
| Msa0747000 | Msa1283960 | 0.801898 | 7.245108e-49 | -8.615850e-47 |
| Msa0747000 | Msa1308850 | 0.801105 | 1.053485e-48 | -8.615850e-47 |
| Msa0747000 | Msa1321530 | 0.804781 | 1.832331e-49 | -8.615850e-47 |
| Msa0747000 | Msa1326640 | 0.801664 | 8.091222e-49 | -8.615850e-47 |
| Msa0747000 | Msa1326680 | 0.813232 | 2.840175e-51 | -8.615850e-47 |
| Msa0747000 | Msa1342810 | 0.816976 | 4.189008e-52 | -8.615850e-47 |
| Msa0747000 | Msa1349690 | 0.800306 | 1.533571e-48 | -8.615850e-47 |
| Msa0747000 | Msa1358290 | 0.804509 | 2.087533e-49 | -8.615850e-47 |
| Msa0747000 | Msa1368750 | 0.802231 | 6.187662e-49 | -8.615850e-47 |
| Msa0747000 | Msa1374790 | 0.810506 | 1.114219e-50 | -8.615850e-47 |
| Msa0747000 | Msa1375350 | 0.803381 | 3.581849e-49 | -8.615850e-47 |
| Msa0747000 | Msa1383310 | 0.824514 | 7.747774e-54 | -8.615850e-47 |
| Msa0747000 | Msa1409410 | 0.836942 | 6.961064e-57 | -8.615850e-47 |
| Msa0747000 | Msa1410160 | 0.811750 | 5.990098e-51 | -8.615850e-47 |
| Msa0747000 | Msa1414170 | 0.800634 | 1.314523e-48 | -8.615850e-47 |
| Msa0747000 | Msa1426110 | 0.815043 | 1.131392e-51 | -8.615850e-47 |
| Msa0747000 | Msa1440630 | 0.804068 | 2.578912e-49 | -8.615850e-47 |
| Msa0747000 | Msa1451820 | 0.808661 | 2.776022e-50 | -8.615850e-47 |
| Msa0747000 | Msa1462490 | 0.809117 | 2.217563e-50 | -8.615850e-47 |
| Msa0121330 | Msa0747000 | 0.811649 | 6.300909e-51 | -8.615850e-47 |
| Msa0129380 | Msa0747000 | 0.830558 | 2.745138e-55 | -8.615850e-47 |
| Msa0146650 | Msa0747000 | 0.848034 | 7.927842e-60 | -8.615850e-47 |
| Msa0154620 | Msa0747000 | 0.801195 | 1.009775e-48 | -8.615850e-47 |
| Msa0156050 | Msa0747000 | 0.809123 | 2.210425e-50 | -8.615850e-47 |
| Msa0156090 | Msa0747000 | 0.807045 | 6.124019e-50 | -8.615850e-47 |
| Msa0161930 | Msa0747000 | 0.800863 | 1.180272e-48 | -8.615850e-47 |
| Msa0176060 | Msa0747000 | 0.945859 | 1.384311e-104 | -8.615850e-47 |
| Msa0218020 | Msa0747000 | 0.805168 | 1.520279e-49 | -8.615850e-47 |
| Msa0367520 | Msa0747000 | 0.802167 | 6.379777e-49 | -8.615850e-47 |
| Msa0380670 | Msa0747000 | 0.806077 | 9.802016e-50 | -8.615850e-47 |
| Msa0381730 | Msa0747000 | 0.816575 | 5.153517e-52 | -8.615850e-47 |
| Msa0401060 | Msa0747000 | 0.804074 | 2.571529e-49 | -8.615850e-47 |
| Msa0422050 | Msa0747000 | 0.803268 | 3.780127e-49 | -8.615850e-47 |
| Msa0431200 | Msa0747000 | 0.824657 | 7.167434e-54 | -8.615850e-47 |
| Msa0432010 | Msa0747000 | 0.806793 | 6.923437e-50 | -8.615850e-47 |
| Msa0466880 | Msa0747000 | 0.812960 | 3.258606e-51 | -8.615850e-47 |
| Msa0284800 | Msa0747000 | 0.816143 | 6.437379e-52 | -8.615850e-47 |
| Msa0330520 | Msa0747000 | 0.812227 | 4.712989e-51 | -8.615850e-47 |
| Msa0334660 | Msa0747000 | 0.827401 | 1.596346e-54 | -8.615850e-47 |
| Msa0500920 | Msa0747000 | 0.809868 | 1.529789e-50 | -8.615850e-47 |
| Msa0504720 | Msa0747000 | 0.820522 | 6.560000e-53 | -8.615850e-47 |
| Msa0517250 | Msa0747000 | 0.800558 | 1.362044e-48 | -8.615850e-47 |
| Msa0520260 | Msa0747000 | 0.821810 | 3.311890e-53 | -8.615850e-47 |
| Msa0520870 | Msa0747000 | 0.813307 | 2.734797e-51 | -8.615850e-47 |
| Msa0531960 | Msa0747000 | 0.813151 | 2.958622e-51 | -8.615850e-47 |
| Msa0550590 | Msa0747000 | 0.808077 | 3.697375e-50 | -8.615850e-47 |
| Msa0570010 | Msa0747000 | 0.824171 | 9.324542e-54 | -8.615850e-47 |
| Msa0590200 | Msa0747000 | 0.805984 | 1.025220e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747000 | MtrunA17_Chr1g0197601 | 91.262 | 515 | 39 | 1 | 1 | 509 | 1 | 515 | 0.0 | 946 |
| Msa0747000 | MtrunA17_Chr6g0478171 | 52.308 | 65 | 31 | 0 | 21 | 85 | 56 | 120 | 1.45e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0747000 | AT3G52170.3 | 55.200 | 125 | 54 | 1 | 2 | 126 | 1 | 123 | 5.37e-31 | 125 |
| Msa0747000 | AT3G52170.4 | 55.200 | 125 | 54 | 1 | 2 | 126 | 1 | 123 | 5.37e-31 | 125 |
| Msa0747000 | AT5G58210.1 | 53.571 | 56 | 22 | 1 | 30 | 85 | 48 | 99 | 1.96e-12 | 69.3 |
| Msa0747000 | AT5G58210.4 | 53.571 | 56 | 22 | 1 | 30 | 85 | 48 | 99 | 1.96e-12 | 69.3 |
| Msa0747000 | AT5G58210.2 | 53.571 | 56 | 22 | 1 | 30 | 85 | 48 | 99 | 1.96e-12 | 69.3 |
| Msa0747000 | AT5G58210.3 | 53.571 | 56 | 22 | 1 | 30 | 85 | 48 | 99 | 1.96e-12 | 69.3 |
Find 132 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAGCGAGGGTTTGGATTT+TGG | 0.126338 | 5_1:+70640729 | Msa0747000:five_prime_UTR |
| CGCAGATAATTCTAATTTAC+TGG | 0.215505 | 5_1:+70643179 | Msa0747000:CDS |
| CCTTGTTAGTCAAATCTAAA+TGG | 0.252894 | 5_1:-70642537 | None:intergenic |
| CAGTTGTGTTGATTCTTCTC+TGG | 0.258782 | 5_1:-70643753 | None:intergenic |
| CTCTTGTTCGACATTCAGTT+TGG | 0.300579 | 5_1:-70642947 | None:intergenic |
| GACAATGGGCATGTCGTAAA+TGG | 0.303801 | 5_1:+70642622 | Msa0747000:CDS |
| CTTCTTTATATCCTTCTCTA+AGG | 0.313422 | 5_1:-70643109 | None:intergenic |
| TCTGGAACTTTCTTGAGTTC+AGG | 0.316178 | 5_1:-70642424 | None:intergenic |
| GTTTCTGATGGGCATTATAC+TGG | 0.323187 | 5_1:+70642691 | Msa0747000:CDS |
| TCCTGCTAAATTCAACTTGC+AGG | 0.334858 | 5_1:+70642306 | Msa0747000:CDS |
| AAAGCCATTGTCAATGCCTT+TGG | 0.335893 | 5_1:+70643978 | Msa0747000:CDS |
| CGAGTAGCGTAGCGAGGGTT+TGG | 0.350834 | 5_1:+70640722 | Msa0747000:five_prime_UTR |
| ATGATGCATTCTGTTGTAAA+AGG | 0.367939 | 5_1:+70641153 | Msa0747000:CDS |
| ATGCACTGACTTGTTCTTTG+TGG | 0.392523 | 5_1:-70643290 | None:intergenic |
| AGTTGTGTTGATTCTTCTCT+GGG | 0.392668 | 5_1:-70643752 | None:intergenic |
| TTATGTGTAAGAGTAATTGA+TGG | 0.394119 | 5_1:-70642211 | None:intergenic |
| GCTGATAAATATAGGCTTGA+TGG | 0.400710 | 5_1:+70643712 | Msa0747000:CDS |
| AGCAGTGGGTCATTTGTATC+TGG | 0.405639 | 5_1:-70642442 | None:intergenic |
| TGCACTGACTTGTTCTTTGT+GGG | 0.406260 | 5_1:-70643289 | None:intergenic |
| CCTTGTTTGTCATGTCTACC+TGG | 0.406365 | 5_1:-70642759 | None:intergenic |
| AAGCCATTGTCAATGCCTTT+GGG | 0.408921 | 5_1:+70643979 | Msa0747000:CDS |
| CAAGGAATCTGTTGAAGCTT+CGG | 0.412916 | 5_1:+70642777 | Msa0747000:CDS |
| GGTTTACTTACCTGCATCTC+AGG | 0.415129 | 5_1:-70642916 | None:intergenic |
| CAATAGAGCGAAAAGAGGAT+TGG | 0.415556 | 5_1:-70643955 | None:intergenic |
| CTCAGGTATAGTAGCTTCAA+TGG | 0.415944 | 5_1:-70642899 | None:intergenic |
| TCTTGTTCGACATTCAGTTT+GGG | 0.422344 | 5_1:-70642946 | None:intergenic |
| AGGAATAGCAATGGAATAGA+AGG | 0.440749 | 5_1:+70643057 | Msa0747000:CDS |
| TTATACTGAAGCTGAGCATC+AGG | 0.444025 | 5_1:+70642483 | Msa0747000:CDS |
| AGTTTCCACTGTTTGACTCT+TGG | 0.444341 | 5_1:-70642186 | None:intergenic |
| TTATACTGAAACTGAGCATC+AGG | 0.445424 | 5_1:+70642594 | Msa0747000:CDS |
| GAAGCTTCTGTTGTTTCTGA+TGG | 0.445970 | 5_1:+70642679 | Msa0747000:CDS |
| AGCAATGGAATAGAAGGTTC+AGG | 0.448760 | 5_1:+70643063 | Msa0747000:CDS |
| AACTTGCAATTGAACCCAAC+GGG | 0.449823 | 5_1:-70642360 | None:intergenic |
| CACTTTCCGTATCATGCCTA+GGG | 0.451455 | 5_1:-70643254 | None:intergenic |
| AGCTTGAGATTGTTGACAAA+GGG | 0.454249 | 5_1:+70642833 | Msa0747000:CDS |
| AATAGAGCGAAAAGAGGATT+GGG | 0.454588 | 5_1:-70643954 | None:intergenic |
| TCCTGCAAGTTGAATTTAGC+AGG | 0.458783 | 5_1:-70642307 | None:intergenic |
| TGAAACATATAACCAAAGTC+AGG | 0.459332 | 5_1:+70643335 | Msa0747000:CDS |
| GATGCACTGAGAAAATGTTC+AGG | 0.461766 | 5_1:-70642385 | None:intergenic |
| GCACTTTCCGTATCATGCCT+AGG | 0.462980 | 5_1:-70643255 | None:intergenic |
| TGCATGAAGCTGATAAATAT+AGG | 0.464650 | 5_1:+70643704 | Msa0747000:CDS |
| GTGTGAAATCAGTGTGAAGA+AGG | 0.467565 | 5_1:-70640759 | None:intergenic |
| AATCCGAGTCTTTCTCCCTT+CGG | 0.470466 | 5_1:-70641217 | None:intergenic |
| GACATTCAGTTTGGGTTCTG+TGG | 0.471769 | 5_1:-70642938 | None:intergenic |
| GAATCAACACAACTGTAGAT+AGG | 0.471897 | 5_1:+70643761 | Msa0747000:CDS |
| GTGGCTCTTTCTACACTGTA+AGG | 0.472014 | 5_1:+70642242 | Msa0747000:CDS |
| AATTCAAGAAAATAGAGTGC+TGG | 0.476605 | 5_1:+70642282 | Msa0747000:CDS |
| CTCAGTGCATCATCAAATGA+AGG | 0.476801 | 5_1:+70642397 | Msa0747000:CDS |
| ACATTCAGTTTGGGTTCTGT+GGG | 0.477504 | 5_1:-70642937 | None:intergenic |
| ATCAGAAACAACAGAAGCTT+CGG | 0.480753 | 5_1:-70642677 | None:intergenic |
| TAGAAGGTTCAGGAGAATTG+AGG | 0.482054 | 5_1:+70643073 | Msa0747000:CDS |
| AGCGACAACAGTGGCTTCAA+TGG | 0.482213 | 5_1:-70642563 | None:intergenic |
| AGCATCAGGTGGTTGACAAT+GGG | 0.489034 | 5_1:+70642608 | Msa0747000:CDS |
| GAGAAATTTGAGAGTCCCCT+TGG | 0.490832 | 5_1:+70643204 | Msa0747000:CDS |
| AGAAGGTTCAGGAGAATTGA+GGG | 0.492321 | 5_1:+70643074 | Msa0747000:CDS |
| GGTTGTGTGGTATGACTATG+AGG | 0.492424 | 5_1:+70644182 | Msa0747000:three_prime_UTR |
| AAGCTTCTGTTGTTTCTGAT+GGG | 0.493641 | 5_1:+70642680 | Msa0747000:CDS |
| AGCTCAAGGTTGTTGACAAA+GGG | 0.499242 | 5_1:+70642719 | Msa0747000:CDS |
| AGAGAAGGATATAAAGAAGT+TGG | 0.501128 | 5_1:+70643113 | Msa0747000:CDS |
| TATAGGCTTGATGGTCAACT+TGG | 0.501804 | 5_1:+70643721 | Msa0747000:CDS |
| ATGTGAAGTTATTCTTCAGC+AGG | 0.504378 | 5_1:-70644091 | None:intergenic |
| ACACTGTAAGGGAGATTGTA+CGG | 0.505294 | 5_1:+70642254 | Msa0747000:CDS |
| TTTGTCAACAACCTTGAGCT+CGG | 0.510556 | 5_1:-70642716 | None:intergenic |
| GACAAAGGGCATGGCATCGA+TGG | 0.513666 | 5_1:+70642847 | Msa0747000:CDS |
| TATATTTATCAGCTTCATGC+AGG | 0.514009 | 5_1:-70643702 | None:intergenic |
| TTCCGTATCATGCCTAGGGT+TGG | 0.517395 | 5_1:-70643250 | None:intergenic |
| ACATTTCCATTGAGATCTGT+TGG | 0.519105 | 5_1:+70643033 | Msa0747000:CDS |
| ATTCAAGAAAATAGAGTGCT+GGG | 0.524858 | 5_1:+70642283 | Msa0747000:CDS |
| AGCTACTATACCTGAGATGC+AGG | 0.526391 | 5_1:+70642906 | Msa0747000:CDS |
| TCGGATTCGACGCTCTAAAG+AGG | 0.528962 | 5_1:+70641233 | Msa0747000:CDS |
| TTCCTACCAACAGATCTCAA+TGG | 0.530928 | 5_1:-70643039 | None:intergenic |
| CTCCAACCCTAGGCATGATA+CGG | 0.531026 | 5_1:+70643248 | Msa0747000:CDS |
| CTGTTGTAAAAGGTGGTTGG+AGG | 0.534279 | 5_1:+70641163 | Msa0747000:CDS |
| GTTTCACTGCAGAGAGTCAT+GGG | 0.534713 | 5_1:+70643899 | Msa0747000:intron |
| GGCAGCTACCACAGTACCAT+TGG | 0.536413 | 5_1:+70642972 | Msa0747000:CDS |
| CCATTTAGATTTGACTAACA+AGG | 0.536765 | 5_1:+70642537 | Msa0747000:CDS |
| GGTTTCACTGCAGAGAGTCA+TGG | 0.537898 | 5_1:+70643898 | Msa0747000:intron |
| AGAGCATTTACTTTAGCCAA+TGG | 0.543934 | 5_1:-70642988 | None:intergenic |
| GAACTTTCTTGAGTTCAGGA+TGG | 0.544040 | 5_1:-70642420 | None:intergenic |
| TCAGGAGAATTGAGGGACTC+TGG | 0.544330 | 5_1:+70643081 | Msa0747000:CDS |
| CTCTGGTAATTCCTTAGAGA+AGG | 0.546329 | 5_1:+70643098 | Msa0747000:CDS |
| GCTATTATCTACGCTGATTG+TGG | 0.546802 | 5_1:+70644053 | Msa0747000:three_prime_UTR |
| TCAGGTATAGTAGCTTCAAT+GGG | 0.548881 | 5_1:-70642898 | None:intergenic |
| GAGCATCAGGTGGTTGACAA+TGG | 0.551435 | 5_1:+70642607 | Msa0747000:CDS |
| AGCATCAGGTGGTTGACGAT+GGG | 0.552915 | 5_1:+70642497 | Msa0747000:CDS |
| ACGCTCTAAAGAGGAAAGAA+AGG | 0.556254 | 5_1:+70641242 | Msa0747000:CDS |
| TAAAGGAAATCTCCAACCCT+AGG | 0.557511 | 5_1:+70643238 | Msa0747000:CDS |
| TGCTTGGCAAGAGCAAATGT+TGG | 0.557759 | 5_1:-70641186 | None:intergenic |
| GCGCAGCATAGATACTAGCC+AGG | 0.560011 | 5_1:+70642741 | Msa0747000:CDS |
| GAGATTGTTGACAAAGGGCA+TGG | 0.567220 | 5_1:+70642838 | Msa0747000:CDS |
| CACTGTAAGGGAGATTGTAC+GGG | 0.570068 | 5_1:+70642255 | Msa0747000:CDS |
| GCTTTCAATAGAGCGAAAAG+AGG | 0.573031 | 5_1:-70643960 | None:intergenic |
| ACTGAATGTCGAACAAGAGT+TGG | 0.573820 | 5_1:+70642951 | Msa0747000:CDS |
| AGGCTTGATGGTCAACTTGG+TGG | 0.575093 | 5_1:+70643724 | Msa0747000:CDS |
| TTCCATTGAGATCTGTTGGT+AGG | 0.575819 | 5_1:+70643037 | Msa0747000:CDS |
| GAGCATCAGGTGGTTGACGA+TGG | 0.577300 | 5_1:+70642496 | Msa0747000:CDS |
| ATGCACTGAGAAAATGTTCA+GGG | 0.577392 | 5_1:-70642384 | None:intergenic |
| TTTCCCAAAGGCATTGACAA+TGG | 0.578706 | 5_1:-70643982 | None:intergenic |
| GAGCTCAAGGTTGTTGACAA+AGG | 0.582128 | 5_1:+70642718 | Msa0747000:CDS |
| TTATACTGGAACCGAGCTCA+AGG | 0.590294 | 5_1:+70642705 | Msa0747000:CDS |
| GCCAAGCAAAATGATTCCGA+AGG | 0.591551 | 5_1:+70641201 | Msa0747000:CDS |
| TGTGGTATGACTATGAGGGC+AGG | 0.594180 | 5_1:+70644187 | Msa0747000:three_prime_UTR |
| TGTTGTTTGTCACATCGACA+TGG | 0.596080 | 5_1:-70642648 | None:intergenic |
| CCAGGTAGACATGACAAACA+AGG | 0.596454 | 5_1:+70642759 | Msa0747000:CDS |
| TGCTGAAGAATAACTTCACA+TGG | 0.603325 | 5_1:+70644093 | Msa0747000:three_prime_UTR |
| TAAAGAGGAAAGAAAGGCAA+TGG | 0.604920 | 5_1:+70641248 | Msa0747000:CDS |
| CGCGGTAGATGTGATAAACA+AGG | 0.605122 | 5_1:+70642873 | Msa0747000:CDS |
| TGGCTCTTTCTACACTGTAA+GGG | 0.609781 | 5_1:+70642243 | Msa0747000:CDS |
| CAACTTGCAATTGAACCCAA+CGG | 0.609972 | 5_1:-70642361 | None:intergenic |
| TATTGTCGAGTAGCGTAGCG+AGG | 0.610584 | 5_1:+70640716 | Msa0747000:five_prime_UTR |
| TCTGTTGGTAGGAATAGCAA+TGG | 0.614572 | 5_1:+70643048 | Msa0747000:CDS |
| ATTCCGAAGGGAGAAAGACT+CGG | 0.621876 | 5_1:+70641214 | Msa0747000:CDS |
| TATCAGAAACAGAAAGCAGT+GGG | 0.627200 | 5_1:-70642456 | None:intergenic |
| ACTCTTACACATAAAGAAGT+CGG | 0.628566 | 5_1:+70642220 | Msa0747000:CDS |
| GAGCTTGAGATTGTTGACAA+AGG | 0.629639 | 5_1:+70642832 | Msa0747000:CDS |
| GATGGGCATGTCATAGATGT+TGG | 0.629886 | 5_1:+70642514 | Msa0747000:CDS |
| ATTGTCGAGTAGCGTAGCGA+GGG | 0.630230 | 5_1:+70640717 | Msa0747000:five_prime_UTR |
| TACTTTAGCCAATGGTACTG+TGG | 0.635115 | 5_1:-70642980 | None:intergenic |
| GTGGTATGACTATGAGGGCA+GGG | 0.637413 | 5_1:+70644188 | Msa0747000:three_prime_UTR |
| TACTGAAGCTGAGCATCAGG+TGG | 0.639952 | 5_1:+70642486 | Msa0747000:CDS |
| CCAAGCAAAATGATTCCGAA+GGG | 0.647968 | 5_1:+70641202 | Msa0747000:CDS |
| ATTCTGTTGTAAAAGGTGGT+TGG | 0.651800 | 5_1:+70641160 | Msa0747000:CDS |
| ATGCATTCTGTTGTAAAAGG+TGG | 0.653181 | 5_1:+70641156 | Msa0747000:CDS |
| TACTGAAACTGAGCATCAGG+TGG | 0.657285 | 5_1:+70642597 | Msa0747000:CDS |
| GTTGTGTGGTATGACTATGA+GGG | 0.680122 | 5_1:+70644183 | Msa0747000:three_prime_UTR |
| CTTACACATAAAGAAGTCGG+TGG | 0.685561 | 5_1:+70642223 | Msa0747000:CDS |
| AGGTACCAAGAGTCAAACAG+TGG | 0.692269 | 5_1:+70642181 | Msa0747000:intron |
| TTATCAGAAACAGAAAGCAG+TGG | 0.699398 | 5_1:-70642457 | None:intergenic |
| ACTCTCATCAGCGACAACAG+TGG | 0.699689 | 5_1:-70642572 | None:intergenic |
| ACGCTACTCGACAATAGTGA+CGG | 0.701418 | 5_1:-70640709 | None:intergenic |
| CAGTAAATTAGAATTATCTG+CGG | 0.719411 | 5_1:-70643178 | None:intergenic |
| GCATGGCATCGATGGCAGCG+CGG | 0.725070 | 5_1:+70642855 | Msa0747000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAATTTTAAAAAGTAAAA+GGG | - | chr5_1:70641403-70641422 | None:intergenic | 10.0% |
| !! | TTCTATTATAAATACAAATA+AGG | - | chr5_1:70641973-70641992 | None:intergenic | 10.0% |
| !!! | ATAATCTAAAATTTTAGAAA+GGG | - | chr5_1:70644139-70644158 | None:intergenic | 10.0% |
| !!! | AATAATCTAAAATTTTAGAA+AGG | - | chr5_1:70644140-70644159 | None:intergenic | 10.0% |
| !! | AATTCAATTAAATAAGTATC+CGG | - | chr5_1:70641007-70641026 | None:intergenic | 15.0% |
| !!! | TGAATTTTAAAAAGTAAAAG+GGG | - | chr5_1:70641402-70641421 | None:intergenic | 15.0% |
| !!! | CATGAATTTTAAAAAGTAAA+AGG | - | chr5_1:70641404-70641423 | None:intergenic | 15.0% |
| !! | ACAAATTGTTAAAATCAATT+AGG | - | chr5_1:70642069-70642088 | None:intergenic | 15.0% |
| !!! | GATTTTAACAATTTGTTTAA+AGG | + | chr5_1:70642073-70642092 | Msa0747000:intron | 15.0% |
| !! | AAACTAAATTATGGATAAAA+AGG | - | chr5_1:70643365-70643384 | None:intergenic | 15.0% |
| !! | TGAAGTAAAGTTAATTAAAT+TGG | + | chr5_1:70643842-70643861 | Msa0747000:intron | 15.0% |
| !!! | TAATCTAAAATTTTAGAAAG+GGG | - | chr5_1:70644138-70644157 | None:intergenic | 15.0% |
| !! | GCGAAAATAAAAAAGAAAAT+GGG | - | chr5_1:70640858-70640877 | None:intergenic | 20.0% |
| !! | AGCGAAAATAAAAAAGAAAA+TGG | - | chr5_1:70640859-70640878 | None:intergenic | 20.0% |
| !! | AAATGAAAGAGAGAAATTAT+GGG | - | chr5_1:70640941-70640960 | None:intergenic | 20.0% |
| !! | AAAATGAAAGAGAGAAATTA+TGG | - | chr5_1:70640942-70640961 | None:intergenic | 20.0% |
| !! | ATTCAATTAAATAAGTATCC+GGG | - | chr5_1:70641006-70641025 | None:intergenic | 20.0% |
| !!! | AAGAAATTACTTTTGAATGA+AGG | - | chr5_1:70641280-70641299 | None:intergenic | 20.0% |
| !! | TACACAAATAATAACACAAT+GGG | - | chr5_1:70641906-70641925 | None:intergenic | 20.0% |
| !!! | GTTTTGTTCTAAAAATTGAT+CGG | - | chr5_1:70642341-70642360 | None:intergenic | 20.0% |
| !!! | AATTACTTTCTTTCTAGTTA+TGG | + | chr5_1:70643611-70643630 | Msa0747000:intron | 20.0% |
| !!! | ATTACTTTCTTTCTAGTTAT+GGG | + | chr5_1:70643612-70643631 | Msa0747000:intron | 20.0% |
| !! | CTTTACTTCATTAAACTAAA+TGG | - | chr5_1:70643832-70643851 | None:intergenic | 20.0% |
| !!! | AATCTAAAATTTTAGAAAGG+GGG | - | chr5_1:70644137-70644156 | None:intergenic | 20.0% |
| !! | TAGGTTAGTTGAATGAAAAT+GGG | - | chr5_1:70640909-70640928 | None:intergenic | 25.0% |
| !! | TTAGGTTAGTTGAATGAAAA+TGG | - | chr5_1:70640910-70640929 | None:intergenic | 25.0% |
| ! | TTATATTGCTAACAAACGAA+TGG | + | chr5_1:70641427-70641446 | Msa0747000:intron | 25.0% |
| ! | TTGTGATAGATAAAAGAAGA+TGG | + | chr5_1:70641469-70641488 | Msa0747000:intron | 25.0% |
| ! | TGTGATAGATAAAAGAAGAT+GGG | + | chr5_1:70641470-70641489 | Msa0747000:intron | 25.0% |
| !!! | AAACAAGGAAAACTTTGTTT+TGG | + | chr5_1:70641508-70641527 | Msa0747000:intron | 25.0% |
| ! | AAAATTGTACAAGAAAACAG+TGG | + | chr5_1:70641568-70641587 | Msa0747000:intron | 25.0% |
| ! | AAATTGTACAAGAAAACAGT+GGG | + | chr5_1:70641569-70641588 | Msa0747000:intron | 25.0% |
| ! | ATGAATTGAAAGAAGCAATA+CGG | + | chr5_1:70641684-70641703 | Msa0747000:intron | 25.0% |
| ! | CTACACAAATAATAACACAA+TGG | - | chr5_1:70641907-70641926 | None:intergenic | 25.0% |
| ! | TTATGTGTAAGAGTAATTGA+TGG | - | chr5_1:70642214-70642233 | None:intergenic | 25.0% |
| ! | CAGTAAATTAGAATTATCTG+CGG | - | chr5_1:70643181-70643200 | None:intergenic | 25.0% |
| !!! | TTTAACTTTTTGTTTCCAAG+GGG | - | chr5_1:70643222-70643241 | None:intergenic | 25.0% |
| !!! | CTTTAACTTTTTGTTTCCAA+GGG | - | chr5_1:70643223-70643242 | None:intergenic | 25.0% |
| ! | TTATCACCACTAAGAAAATT+TGG | + | chr5_1:70643391-70643410 | Msa0747000:intron | 25.0% |
| ! | TATCACCACTAAGAAAATTT+GGG | + | chr5_1:70643392-70643411 | Msa0747000:intron | 25.0% |
| ! | TAAACGATTCTGTATTGTAT+GGG | - | chr5_1:70643573-70643592 | None:intergenic | 25.0% |
| ! | ATAAACGATTCTGTATTGTA+TGG | - | chr5_1:70643574-70643593 | None:intergenic | 25.0% |
| !!! | TCAATTTCTTTTAACTAGAG+AGG | - | chr5_1:70644216-70644235 | None:intergenic | 25.0% |
| ATGATGCATTCTGTTGTAAA+AGG | + | chr5_1:70641153-70641172 | Msa0747000:CDS | 30.0% | |
| ! | ACTCATGTTTTACTACTTTC+TGG | + | chr5_1:70641309-70641328 | Msa0747000:intron | 30.0% |
| CTTAAGTTAAGTAGCATGTT+TGG | - | chr5_1:70641378-70641397 | None:intergenic | 30.0% | |
| AAAACAGTGGGAAAAATACT+GGG | + | chr5_1:70641581-70641600 | Msa0747000:intron | 30.0% | |
| AAATACTGGGAAATGATAAC+AGG | + | chr5_1:70641594-70641613 | Msa0747000:intron | 30.0% | |
| GTGAATACGTTTAGCAAATA+CGG | - | chr5_1:70641818-70641837 | None:intergenic | 30.0% | |
| AAATAATAACACAATGGGAG+GGG | - | chr5_1:70641901-70641920 | None:intergenic | 30.0% | |
| CAAATAATAACACAATGGGA+GGG | - | chr5_1:70641902-70641921 | None:intergenic | 30.0% | |
| ACAAATAATAACACAATGGG+AGG | - | chr5_1:70641903-70641922 | None:intergenic | 30.0% | |
| CTATATAGTTACTTGTCTTC+AGG | + | chr5_1:70642161-70642180 | Msa0747000:intron | 30.0% | |
| ACTCTTACACATAAAGAAGT+CGG | + | chr5_1:70642220-70642239 | Msa0747000:CDS | 30.0% | |
| AATTCAAGAAAATAGAGTGC+TGG | + | chr5_1:70642282-70642301 | Msa0747000:CDS | 30.0% | |
| ! | ATTCAAGAAAATAGAGTGCT+GGG | + | chr5_1:70642283-70642302 | Msa0747000:CDS | 30.0% |
| !!! | ATTTTTAGAACAAAACCCGT+TGG | + | chr5_1:70642345-70642364 | Msa0747000:CDS | 30.0% |
| !!! | TTTTTAGAACAAAACCCGTT+GGG | + | chr5_1:70642346-70642365 | Msa0747000:CDS | 30.0% |
| CCTTGTTAGTCAAATCTAAA+TGG | - | chr5_1:70642540-70642559 | None:intergenic | 30.0% | |
| CCATTTAGATTTGACTAACA+AGG | + | chr5_1:70642537-70642556 | Msa0747000:CDS | 30.0% | |
| CTTCTTTATATCCTTCTCTA+AGG | - | chr5_1:70643112-70643131 | None:intergenic | 30.0% | |
| AGAGAAGGATATAAAGAAGT+TGG | + | chr5_1:70643113-70643132 | Msa0747000:CDS | 30.0% | |
| CGCAGATAATTCTAATTTAC+TGG | + | chr5_1:70643179-70643198 | Msa0747000:CDS | 30.0% | |
| !! | CCTTTAACTTTTTGTTTCCA+AGG | - | chr5_1:70643224-70643243 | None:intergenic | 30.0% |
| CCTTGGAAACAAAAAGTTAA+AGG | + | chr5_1:70643221-70643240 | Msa0747000:CDS | 30.0% | |
| TGAAACATATAACCAAAGTC+AGG | + | chr5_1:70643335-70643354 | Msa0747000:CDS | 30.0% | |
| ATCACCACTAAGAAAATTTG+GGG | + | chr5_1:70643393-70643412 | Msa0747000:intron | 30.0% | |
| ! | GGAAGTAGTTTATATGCTTT+TGG | + | chr5_1:70643415-70643434 | Msa0747000:intron | 30.0% |
| CAAGAAAACACAACACAAAT+CGG | - | chr5_1:70643488-70643507 | None:intergenic | 30.0% | |
| ATAAATTGATGCAGTTACTG+AGG | - | chr5_1:70643520-70643539 | None:intergenic | 30.0% | |
| TCTGAAAATATTCAGACTCA+TGG | + | chr5_1:70643545-70643564 | Msa0747000:intron | 30.0% | |
| TATATTTATCAGCTTCATGC+AGG | - | chr5_1:70643705-70643724 | None:intergenic | 30.0% | |
| TGCATGAAGCTGATAAATAT+AGG | + | chr5_1:70643704-70643723 | Msa0747000:CDS | 30.0% | |
| ATCCAAGAATTCAGCAAAAA+AGG | + | chr5_1:70643929-70643948 | Msa0747000:CDS | 30.0% | |
| !!! | TTCCTTTTTTGCTGAATTCT+TGG | - | chr5_1:70643934-70643953 | None:intergenic | 30.0% |
| TTCTGACAAAAATTTCCCAA+AGG | - | chr5_1:70643997-70644016 | None:intergenic | 30.0% | |
| !! | AAAATTTTAGAAAGGGGGAA+GGG | - | chr5_1:70644132-70644151 | None:intergenic | 30.0% |
| !! | TAAAATTTTAGAAAGGGGGA+AGG | - | chr5_1:70644133-70644152 | None:intergenic | 30.0% |
| !!! | TGATCTTGTTTTGATTGACT+TGG | + | chr5_1:70644161-70644180 | Msa0747000:three_prime_UTR | 30.0% |
| GAAGAAGAAGAAGAAGAAGA+GGG | - | chr5_1:70640789-70640808 | None:intergenic | 35.0% | |
| TAAATAAGTATCCGGGACTT+GGG | - | chr5_1:70640999-70641018 | None:intergenic | 35.0% | |
| TTAAATAAGTATCCGGGACT+TGG | - | chr5_1:70641000-70641019 | None:intergenic | 35.0% | |
| GATATGTTATGTAACCACTC+TGG | + | chr5_1:70641077-70641096 | Msa0747000:intron | 35.0% | |
| ATGCATTCTGTTGTAAAAGG+TGG | + | chr5_1:70641156-70641175 | Msa0747000:CDS | 35.0% | |
| ATTCTGTTGTAAAAGGTGGT+TGG | + | chr5_1:70641160-70641179 | Msa0747000:CDS | 35.0% | |
| TAAAGAGGAAAGAAAGGCAA+TGG | + | chr5_1:70641248-70641267 | Msa0747000:CDS | 35.0% | |
| ! | TCTGGCGAATGTTTTATGTT+TGG | + | chr5_1:70641327-70641346 | Msa0747000:intron | 35.0% |
| GATAGATAAAAGAAGATGGG+AGG | + | chr5_1:70641473-70641492 | Msa0747000:intron | 35.0% | |
| GAAAACAGTGGGAAAAATAC+TGG | + | chr5_1:70641580-70641599 | Msa0747000:intron | 35.0% | |
| ATCACTCGTGTATCAAACTT+AGG | - | chr5_1:70641728-70641747 | None:intergenic | 35.0% | |
| AGAATGTAGATCTGTGTGAA+TGG | + | chr5_1:70641927-70641946 | Msa0747000:intron | 35.0% | |
| ATGCACTGAGAAAATGTTCA+GGG | - | chr5_1:70642387-70642406 | None:intergenic | 35.0% | |
| TATCAGAAACAGAAAGCAGT+GGG | - | chr5_1:70642459-70642478 | None:intergenic | 35.0% | |
| TTATCAGAAACAGAAAGCAG+TGG | - | chr5_1:70642460-70642479 | None:intergenic | 35.0% | |
| TTATACTGAAACTGAGCATC+AGG | + | chr5_1:70642594-70642613 | Msa0747000:CDS | 35.0% | |
| ATCAGAAACAACAGAAGCTT+CGG | - | chr5_1:70642680-70642699 | None:intergenic | 35.0% | |
| !! | AAGCTTCTGTTGTTTCTGAT+GGG | + | chr5_1:70642680-70642699 | Msa0747000:CDS | 35.0% |
| AGCTTGAGATTGTTGACAAA+GGG | + | chr5_1:70642833-70642852 | Msa0747000:CDS | 35.0% | |
| TCAGGTATAGTAGCTTCAAT+GGG | - | chr5_1:70642901-70642920 | None:intergenic | 35.0% | |
| TCTTGTTCGACATTCAGTTT+GGG | - | chr5_1:70642949-70642968 | None:intergenic | 35.0% | |
| ! | AGAGCATTTACTTTAGCCAA+TGG | - | chr5_1:70642991-70643010 | None:intergenic | 35.0% |
| ACATTTCCATTGAGATCTGT+TGG | + | chr5_1:70643033-70643052 | Msa0747000:CDS | 35.0% | |
| AGGAATAGCAATGGAATAGA+AGG | + | chr5_1:70643057-70643076 | Msa0747000:CDS | 35.0% | |
| TAAAAAGGCTAACCTGACTT+TGG | - | chr5_1:70643350-70643369 | None:intergenic | 35.0% | |
| TCACCACTAAGAAAATTTGG+GGG | + | chr5_1:70643394-70643413 | Msa0747000:intron | 35.0% | |
| !! | ACTTTCTTTCTAGTTATGGG+AGG | + | chr5_1:70643615-70643634 | Msa0747000:intron | 35.0% |
| GCTGATAAATATAGGCTTGA+TGG | + | chr5_1:70643712-70643731 | Msa0747000:CDS | 35.0% | |
| !! | AGTTGTGTTGATTCTTCTCT+GGG | - | chr5_1:70643755-70643774 | None:intergenic | 35.0% |
| GAATCAACACAACTGTAGAT+AGG | + | chr5_1:70643761-70643780 | Msa0747000:CDS | 35.0% | |
| AGCTAACTTGACCTTTCTAA+TGG | + | chr5_1:70643877-70643896 | Msa0747000:intron | 35.0% | |
| AATAGAGCGAAAAGAGGATT+GGG | - | chr5_1:70643957-70643976 | None:intergenic | 35.0% | |
| ATGTGAAGTTATTCTTCAGC+AGG | - | chr5_1:70644094-70644113 | None:intergenic | 35.0% | |
| TGCTGAAGAATAACTTCACA+TGG | + | chr5_1:70644093-70644112 | Msa0747000:three_prime_UTR | 35.0% | |
| !! | AAATTTTAGAAAGGGGGAAG+GGG | - | chr5_1:70644131-70644150 | None:intergenic | 35.0% |
| !!! | TTTTGATTGACTTGGTTGTG+TGG | + | chr5_1:70644169-70644188 | Msa0747000:three_prime_UTR | 35.0% |
| GTGTGAAATCAGTGTGAAGA+AGG | - | chr5_1:70640762-70640781 | None:intergenic | 40.0% | |
| CGAAGAAGAAGAAGAAGAAG+AGG | - | chr5_1:70640790-70640809 | None:intergenic | 40.0% | |
| CTTCTTCTTCTTCTTCTTCG+AGG | + | chr5_1:70640790-70640809 | Msa0747000:five_prime_UTR | 40.0% | |
| AAATTATGGGCGACAGACTT+AGG | - | chr5_1:70640928-70640947 | None:intergenic | 40.0% | |
| CATACAGTAAGTATCCAGAG+TGG | - | chr5_1:70641094-70641113 | None:intergenic | 40.0% | |
| TCTGGATACTTACTGTATGC+AGG | + | chr5_1:70641095-70641114 | Msa0747000:intron | 40.0% | |
| CCAAGCAAAATGATTCCGAA+GGG | + | chr5_1:70641202-70641221 | Msa0747000:CDS | 40.0% | |
| !! | ACGCTCTAAAGAGGAAAGAA+AGG | + | chr5_1:70641242-70641261 | Msa0747000:CDS | 40.0% |
| AGATAAAAGAAGATGGGAGG+CGG | + | chr5_1:70641476-70641495 | Msa0747000:intron | 40.0% | |
| AAACGTGCCTGACTTATTGT+AGG | + | chr5_1:70641630-70641649 | Msa0747000:intron | 40.0% | |
| AACGTGCCTGACTTATTGTA+GGG | + | chr5_1:70641631-70641650 | Msa0747000:intron | 40.0% | |
| AATACCCCCTACAATAAGTC+AGG | - | chr5_1:70641640-70641659 | None:intergenic | 40.0% | |
| AGTTTCCACTGTTTGACTCT+TGG | - | chr5_1:70642189-70642208 | None:intergenic | 40.0% | |
| CTTACACATAAAGAAGTCGG+TGG | + | chr5_1:70642223-70642242 | Msa0747000:CDS | 40.0% | |
| TGGCTCTTTCTACACTGTAA+GGG | + | chr5_1:70642243-70642262 | Msa0747000:CDS | 40.0% | |
| ACACTGTAAGGGAGATTGTA+CGG | + | chr5_1:70642254-70642273 | Msa0747000:CDS | 40.0% | |
| TCCTGCTAAATTCAACTTGC+AGG | + | chr5_1:70642306-70642325 | Msa0747000:CDS | 40.0% | |
| ! | TCCTGCAAGTTGAATTTAGC+AGG | - | chr5_1:70642310-70642329 | None:intergenic | 40.0% |
| AACTTGCAATTGAACCCAAC+GGG | - | chr5_1:70642363-70642382 | None:intergenic | 40.0% | |
| CAACTTGCAATTGAACCCAA+CGG | - | chr5_1:70642364-70642383 | None:intergenic | 40.0% | |
| GATGCACTGAGAAAATGTTC+AGG | - | chr5_1:70642388-70642407 | None:intergenic | 40.0% | |
| CTCAGTGCATCATCAAATGA+AGG | + | chr5_1:70642397-70642416 | Msa0747000:CDS | 40.0% | |
| GAACTTTCTTGAGTTCAGGA+TGG | - | chr5_1:70642423-70642442 | None:intergenic | 40.0% | |
| ! | TCTGGAACTTTCTTGAGTTC+AGG | - | chr5_1:70642427-70642446 | None:intergenic | 40.0% |
| TTATACTGAAGCTGAGCATC+AGG | + | chr5_1:70642483-70642502 | Msa0747000:CDS | 40.0% | |
| ! | TGTTGTTTGTCACATCGACA+TGG | - | chr5_1:70642651-70642670 | None:intergenic | 40.0% |
| !! | GAAGCTTCTGTTGTTTCTGA+TGG | + | chr5_1:70642679-70642698 | Msa0747000:CDS | 40.0% |
| ! | GTTTCTGATGGGCATTATAC+TGG | + | chr5_1:70642691-70642710 | Msa0747000:CDS | 40.0% |
| TTTGTCAACAACCTTGAGCT+CGG | - | chr5_1:70642719-70642738 | None:intergenic | 40.0% | |
| AGCTCAAGGTTGTTGACAAA+GGG | + | chr5_1:70642719-70642738 | Msa0747000:CDS | 40.0% | |
| CAAGGAATCTGTTGAAGCTT+CGG | + | chr5_1:70642777-70642796 | Msa0747000:CDS | 40.0% | |
| GAGCTTGAGATTGTTGACAA+AGG | + | chr5_1:70642832-70642851 | Msa0747000:CDS | 40.0% | |
| CTCAGGTATAGTAGCTTCAA+TGG | - | chr5_1:70642902-70642921 | None:intergenic | 40.0% | |
| ! | ACATTCAGTTTGGGTTCTGT+GGG | - | chr5_1:70642940-70642959 | None:intergenic | 40.0% |
| CTCTTGTTCGACATTCAGTT+TGG | - | chr5_1:70642950-70642969 | None:intergenic | 40.0% | |
| ACTGAATGTCGAACAAGAGT+TGG | + | chr5_1:70642951-70642970 | Msa0747000:CDS | 40.0% | |
| TACTTTAGCCAATGGTACTG+TGG | - | chr5_1:70642983-70643002 | None:intergenic | 40.0% | |
| TTCCATTGAGATCTGTTGGT+AGG | + | chr5_1:70643037-70643056 | Msa0747000:CDS | 40.0% | |
| TTCCTACCAACAGATCTCAA+TGG | - | chr5_1:70643042-70643061 | None:intergenic | 40.0% | |
| ! | TCTGTTGGTAGGAATAGCAA+TGG | + | chr5_1:70643048-70643067 | Msa0747000:CDS | 40.0% |
| AGCAATGGAATAGAAGGTTC+AGG | + | chr5_1:70643063-70643082 | Msa0747000:CDS | 40.0% | |
| TAGAAGGTTCAGGAGAATTG+AGG | + | chr5_1:70643073-70643092 | Msa0747000:CDS | 40.0% | |
| AGAAGGTTCAGGAGAATTGA+GGG | + | chr5_1:70643074-70643093 | Msa0747000:CDS | 40.0% | |
| CTCTGGTAATTCCTTAGAGA+AGG | + | chr5_1:70643098-70643117 | Msa0747000:CDS | 40.0% | |
| TAAAGGAAATCTCCAACCCT+AGG | + | chr5_1:70643238-70643257 | Msa0747000:CDS | 40.0% | |
| !! | TGCACTGACTTGTTCTTTGT+GGG | - | chr5_1:70643292-70643311 | None:intergenic | 40.0% |
| !! | ATGCACTGACTTGTTCTTTG+TGG | - | chr5_1:70643293-70643312 | None:intergenic | 40.0% |
| ! | CTTCCCCCAAATTTTCTTAG+TGG | - | chr5_1:70643400-70643419 | None:intergenic | 40.0% |
| ! | TATAGGCTTGATGGTCAACT+TGG | + | chr5_1:70643721-70643740 | Msa0747000:CDS | 40.0% |
| !! | CAGTTGTGTTGATTCTTCTC+TGG | - | chr5_1:70643756-70643775 | None:intergenic | 40.0% |
| CTGCAGTGAAACCATTAGAA+AGG | - | chr5_1:70643891-70643910 | None:intergenic | 40.0% | |
| CAATAGAGCGAAAAGAGGAT+TGG | - | chr5_1:70643958-70643977 | None:intergenic | 40.0% | |
| GCTTTCAATAGAGCGAAAAG+AGG | - | chr5_1:70643963-70643982 | None:intergenic | 40.0% | |
| AAAGCCATTGTCAATGCCTT+TGG | + | chr5_1:70643978-70643997 | Msa0747000:CDS | 40.0% | |
| AAGCCATTGTCAATGCCTTT+GGG | + | chr5_1:70643979-70643998 | Msa0747000:CDS | 40.0% | |
| !! | TTTCCCAAAGGCATTGACAA+TGG | - | chr5_1:70643985-70644004 | None:intergenic | 40.0% |
| ! | GCTATTATCTACGCTGATTG+TGG | + | chr5_1:70644053-70644072 | Msa0747000:three_prime_UTR | 40.0% |
| GTTGTGTGGTATGACTATGA+GGG | + | chr5_1:70644183-70644202 | Msa0747000:three_prime_UTR | 40.0% | |
| ACGCTACTCGACAATAGTGA+CGG | - | chr5_1:70640712-70640731 | None:intergenic | 45.0% | |
| ! | GTAGCGAGGGTTTGGATTTT+GGG | + | chr5_1:70640730-70640749 | Msa0747000:five_prime_UTR | 45.0% |
| ! | TAGCGAGGGTTTGGATTTTG+GGG | + | chr5_1:70640731-70640750 | Msa0747000:five_prime_UTR | 45.0% |
| CTACAAACTAACCCAAGTCC+CGG | + | chr5_1:70640985-70641004 | Msa0747000:intron | 45.0% | |
| CTGTTGTAAAAGGTGGTTGG+AGG | + | chr5_1:70641163-70641182 | Msa0747000:CDS | 45.0% | |
| TGCTTGGCAAGAGCAAATGT+TGG | - | chr5_1:70641189-70641208 | None:intergenic | 45.0% | |
| GCCAAGCAAAATGATTCCGA+AGG | + | chr5_1:70641201-70641220 | Msa0747000:CDS | 45.0% | |
| ! | CCCTTCGGAATCATTTTGCT+TGG | - | chr5_1:70641205-70641224 | None:intergenic | 45.0% |
| ATTCCGAAGGGAGAAAGACT+CGG | + | chr5_1:70641214-70641233 | Msa0747000:CDS | 45.0% | |
| AATCCGAGTCTTTCTCCCTT+CGG | - | chr5_1:70641220-70641239 | None:intergenic | 45.0% | |
| ! | AGGCGGTGTTTTCAGAAACA+AGG | + | chr5_1:70641493-70641512 | Msa0747000:intron | 45.0% |
| ACGTGCCTGACTTATTGTAG+GGG | + | chr5_1:70641632-70641651 | Msa0747000:intron | 45.0% | |
| AGGTACCAAGAGTCAAACAG+TGG | + | chr5_1:70642181-70642200 | Msa0747000:intron | 45.0% | |
| GTGGCTCTTTCTACACTGTA+AGG | + | chr5_1:70642242-70642261 | Msa0747000:CDS | 45.0% | |
| CACTGTAAGGGAGATTGTAC+GGG | + | chr5_1:70642255-70642274 | Msa0747000:CDS | 45.0% | |
| AGCAGTGGGTCATTTGTATC+TGG | - | chr5_1:70642445-70642464 | None:intergenic | 45.0% | |
| GATGGGCATGTCATAGATGT+TGG | + | chr5_1:70642514-70642533 | Msa0747000:CDS | 45.0% | |
| TACTGAAACTGAGCATCAGG+TGG | + | chr5_1:70642597-70642616 | Msa0747000:CDS | 45.0% | |
| AGCATCAGGTGGTTGACAAT+GGG | + | chr5_1:70642608-70642627 | Msa0747000:CDS | 45.0% | |
| GACAATGGGCATGTCGTAAA+TGG | + | chr5_1:70642622-70642641 | Msa0747000:CDS | 45.0% | |
| TTATACTGGAACCGAGCTCA+AGG | + | chr5_1:70642705-70642724 | Msa0747000:CDS | 45.0% | |
| GAGCTCAAGGTTGTTGACAA+AGG | + | chr5_1:70642718-70642737 | Msa0747000:CDS | 45.0% | |
| ! | CCTTGTTTGTCATGTCTACC+TGG | - | chr5_1:70642762-70642781 | None:intergenic | 45.0% |
| CCAGGTAGACATGACAAACA+AGG | + | chr5_1:70642759-70642778 | Msa0747000:CDS | 45.0% | |
| GAGATTGTTGACAAAGGGCA+TGG | + | chr5_1:70642838-70642857 | Msa0747000:CDS | 45.0% | |
| CGCGGTAGATGTGATAAACA+AGG | + | chr5_1:70642873-70642892 | Msa0747000:CDS | 45.0% | |
| AGCTACTATACCTGAGATGC+AGG | + | chr5_1:70642906-70642925 | Msa0747000:CDS | 45.0% | |
| GGTTTACTTACCTGCATCTC+AGG | - | chr5_1:70642919-70642938 | None:intergenic | 45.0% | |
| ! | GACATTCAGTTTGGGTTCTG+TGG | - | chr5_1:70642941-70642960 | None:intergenic | 45.0% |
| GAGAAATTTGAGAGTCCCCT+TGG | + | chr5_1:70643204-70643223 | Msa0747000:CDS | 45.0% | |
| CACTTTCCGTATCATGCCTA+GGG | - | chr5_1:70643257-70643276 | None:intergenic | 45.0% | |
| GATGCAGTTACTGAGGTATG+AGG | - | chr5_1:70643513-70643532 | None:intergenic | 45.0% | |
| GTTTCACTGCAGAGAGTCAT+GGG | + | chr5_1:70643899-70643918 | Msa0747000:intron | 45.0% | |
| GGTTGTGTGGTATGACTATG+AGG | + | chr5_1:70644182-70644201 | Msa0747000:three_prime_UTR | 45.0% | |
| !!! | TAATTTTAAAAACTAAATTA+TGG | - | chr5_1:70643374-70643393 | None:intergenic | 5.0% |
| TATTGTCGAGTAGCGTAGCG+AGG | + | chr5_1:70640716-70640735 | Msa0747000:five_prime_UTR | 50.0% | |
| ATTGTCGAGTAGCGTAGCGA+GGG | + | chr5_1:70640717-70640736 | Msa0747000:five_prime_UTR | 50.0% | |
| ! | CGTAGCGAGGGTTTGGATTT+TGG | + | chr5_1:70640729-70640748 | Msa0747000:five_prime_UTR | 50.0% |
| !! | TCGGATTCGACGCTCTAAAG+AGG | + | chr5_1:70641233-70641252 | Msa0747000:CDS | 50.0% |
| CGTGCCTGACTTATTGTAGG+GGG | + | chr5_1:70641633-70641652 | Msa0747000:intron | 50.0% | |
| TACTGAAGCTGAGCATCAGG+TGG | + | chr5_1:70642486-70642505 | Msa0747000:CDS | 50.0% | |
| AGCATCAGGTGGTTGACGAT+GGG | + | chr5_1:70642497-70642516 | Msa0747000:CDS | 50.0% | |
| AGCGACAACAGTGGCTTCAA+TGG | - | chr5_1:70642566-70642585 | None:intergenic | 50.0% | |
| ACTCTCATCAGCGACAACAG+TGG | - | chr5_1:70642575-70642594 | None:intergenic | 50.0% | |
| GAGCATCAGGTGGTTGACAA+TGG | + | chr5_1:70642607-70642626 | Msa0747000:CDS | 50.0% | |
| TCAGGAGAATTGAGGGACTC+TGG | + | chr5_1:70643081-70643100 | Msa0747000:CDS | 50.0% | |
| CTCCAACCCTAGGCATGATA+CGG | + | chr5_1:70643248-70643267 | Msa0747000:CDS | 50.0% | |
| TTCCGTATCATGCCTAGGGT+TGG | - | chr5_1:70643253-70643272 | None:intergenic | 50.0% | |
| GCACTTTCCGTATCATGCCT+AGG | - | chr5_1:70643258-70643277 | None:intergenic | 50.0% | |
| ! | AGGCTTGATGGTCAACTTGG+TGG | + | chr5_1:70643724-70643743 | Msa0747000:CDS | 50.0% |
| GGTTTCACTGCAGAGAGTCA+TGG | + | chr5_1:70643898-70643917 | Msa0747000:intron | 50.0% | |
| TGTGGTATGACTATGAGGGC+AGG | + | chr5_1:70644187-70644206 | Msa0747000:three_prime_UTR | 50.0% | |
| GTGGTATGACTATGAGGGCA+GGG | + | chr5_1:70644188-70644207 | Msa0747000:three_prime_UTR | 50.0% | |
| GAGCATCAGGTGGTTGACGA+TGG | + | chr5_1:70642496-70642515 | Msa0747000:CDS | 55.0% | |
| GCGCAGCATAGATACTAGCC+AGG | + | chr5_1:70642741-70642760 | Msa0747000:CDS | 55.0% | |
| ! | GACAAAGGGCATGGCATCGA+TGG | + | chr5_1:70642847-70642866 | Msa0747000:CDS | 55.0% |
| GGCAGCTACCACAGTACCAT+TGG | + | chr5_1:70642972-70642991 | Msa0747000:CDS | 55.0% | |
| CGAGTAGCGTAGCGAGGGTT+TGG | + | chr5_1:70640722-70640741 | Msa0747000:five_prime_UTR | 60.0% | |
| !! | GCATGGCATCGATGGCAGCG+CGG | + | chr5_1:70642855-70642874 | Msa0747000:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 70640705 | 70644252 | 70640705 | ID=Msa0747000;Name=Msa0747000 |
| chr5_1 | mRNA | 70640705 | 70644252 | 70640705 | ID=Msa0747000-mRNA-1;Parent=Msa0747000;Name=Msa0747000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=143|1|1|1|0.75|0.8|5|233|509 |
| chr5_1 | exon | 70640705 | 70640811 | 70640705 | ID=Msa0747000-mRNA-1:exon:20769;Parent=Msa0747000-mRNA-1 |
| chr5_1 | exon | 70641117 | 70641289 | 70641117 | ID=Msa0747000-mRNA-1:exon:20770;Parent=Msa0747000-mRNA-1 |
| chr5_1 | exon | 70642183 | 70643356 | 70642183 | ID=Msa0747000-mRNA-1:exon:20771;Parent=Msa0747000-mRNA-1 |
| chr5_1 | exon | 70643682 | 70643791 | 70643682 | ID=Msa0747000-mRNA-1:exon:20772;Parent=Msa0747000-mRNA-1 |
| chr5_1 | exon | 70643911 | 70644252 | 70643911 | ID=Msa0747000-mRNA-1:exon:20773;Parent=Msa0747000-mRNA-1 |
| chr5_1 | five_prime_UTR | 70640705 | 70640811 | 70640705 | ID=Msa0747000-mRNA-1:five_prime_utr;Parent=Msa0747000-mRNA-1 |
| chr5_1 | five_prime_UTR | 70641117 | 70641152 | 70641117 | ID=Msa0747000-mRNA-1:five_prime_utr;Parent=Msa0747000-mRNA-1 |
| chr5_1 | CDS | 70641153 | 70641289 | 70641153 | ID=Msa0747000-mRNA-1:cds;Parent=Msa0747000-mRNA-1 |
| chr5_1 | CDS | 70642183 | 70643356 | 70642183 | ID=Msa0747000-mRNA-1:cds;Parent=Msa0747000-mRNA-1 |
| chr5_1 | CDS | 70643682 | 70643791 | 70643682 | ID=Msa0747000-mRNA-1:cds;Parent=Msa0747000-mRNA-1 |
| chr5_1 | CDS | 70643911 | 70644019 | 70643911 | ID=Msa0747000-mRNA-1:cds;Parent=Msa0747000-mRNA-1 |
| chr5_1 | three_prime_UTR | 70644020 | 70644252 | 70644020 | ID=Msa0747000-mRNA-1:three_prime_utr;Parent=Msa0747000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
