AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0051910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051910 MtrunA17_Chr1g0153271 95.541 471 21 0 1 471 1 471 0.0 932
Msa0051910 MtrunA17_Chr5g0402171 49.342 456 228 3 11 464 13 467 1.99e-162 467
Msa0051910 MtrunA17_Chr7g0276561 40.702 484 249 5 11 457 8 490 3.40e-121 363
Msa0051910 MtrunA17_Chr3g0123741 48.399 281 123 3 179 457 37 297 6.72e-87 268
Msa0051910 MtrunA17_Chr3g0123751 39.450 109 54 1 73 169 33 141 7.45e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0051910 AT5G42930.1 54.428 463 202 4 10 464 6 467 0.0 537
Msa0051910 AT1G56630.1 53.863 466 196 6 10 457 6 470 1.44e-176 504
Msa0051910 AT1G45201.1 50.216 462 222 5 3 459 4 462 7.52e-160 461
Msa0051910 AT1G45201.3 50.216 462 222 5 3 459 29 487 1.44e-159 461
Msa0051910 AT5G42930.2 53.543 381 169 3 10 383 6 385 4.78e-150 434
Msa0051910 AT5G67050.1 47.033 455 227 7 11 456 13 462 1.14e-147 430
Msa0051910 AT1G45201.2 49.482 386 187 5 3 383 4 386 1.26e-126 373
Msa0051910 AT3G14360.1 38.076 499 266 7 2 457 10 508 1.51e-122 367
Msa0051910 AT5G18640.5 27.059 170 85 6 199 358 98 238 2.29e-11 65.1
Msa0051910 AT5G18640.1 27.059 170 85 6 199 358 98 238 2.82e-11 65.5
Msa0051910 AT5G18640.3 27.059 170 85 6 199 358 98 238 2.82e-11 65.5
Msa0051910 AT5G18640.4 27.059 170 85 6 199 358 110 250 3.08e-11 65.5
Msa0051910 AT5G18640.2 27.059 170 85 6 199 358 110 250 3.08e-11 65.5

Find 119 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCCTTCTTGAAAATTAT+TGG 0.135024 1_2:+6071032 Msa0051910:CDS
CTCTTCTTCAACTTTCTTAA+AGG 0.156900 1_2:+6071110 Msa0051910:CDS
GCAATGCAGTTAGAAATAAT+TGG 0.189881 1_2:+6071441 Msa0051910:CDS
CAAACTGCGTTTAAGATCTT+TGG 0.213583 1_2:-6073849 None:intergenic
GATGCAAAATTCATATTAAC+AGG 0.242406 1_2:+6073378 Msa0051910:CDS
AGAACTATTTCTCTTTGTTC+TGG 0.244149 1_2:+6073820 Msa0051910:CDS
CAAAGATCTTAAACGCAGTT+TGG 0.279408 1_2:+6073850 Msa0051910:CDS
TGCTTCAATGATACAACTTT+TGG 0.288502 1_2:-6074274 None:intergenic
AGAAATGTTGAAGGAAAATA+AGG 0.289378 1_2:+6073356 Msa0051910:CDS
TTAGAAGGTGTTTATACATT+TGG 0.293212 1_2:+6073480 Msa0051910:CDS
CTTGTTGGATTGATAATTCC+AGG 0.293883 1_2:+6073951 Msa0051910:CDS
CATATTAACAGGGCATAGTT+TGG 0.299211 1_2:+6073389 Msa0051910:CDS
TTCCTTCTACCATTTGTTAT+AGG 0.311769 1_2:+6073888 Msa0051910:CDS
ATATGTTTACTCCAATGATA+TGG 0.321173 1_2:+6073581 Msa0051910:CDS
TAGAAGGTGTTTATACATTT+GGG 0.324429 1_2:+6073481 Msa0051910:CDS
AAAGAGAAATAGTTCTTGTT+TGG 0.329154 1_2:-6073813 None:intergenic
AGAGTTGGAGACGAGAAGTT+TGG 0.331097 1_2:+6073510 Msa0051910:CDS
CAATGCAGTTAGAAATAATT+GGG 0.335327 1_2:+6071442 Msa0051910:CDS
CTTCTTTCATCAATTTCTTT+AGG 0.343200 1_2:-6073291 None:intergenic
TTGATTGTGGTTGCATTTAG+AGG 0.348509 1_2:+6073141 Msa0051910:CDS
AAGCAAAATCAGTATGTGAT+AGG 0.356908 1_2:+6074292 Msa0051910:three_prime_UTR
ATCTCCATGTATTTGTTGTT+CGG 0.358677 1_2:-6070832 None:intergenic
ATGGCATTGTTCAGGCTTGT+TGG 0.361487 1_2:+6073936 Msa0051910:CDS
ATTGGTTCATGGCATTGTTC+AGG 0.361946 1_2:+6073928 Msa0051910:CDS
GAACTATTTCTCTTTGTTCT+GGG 0.395273 1_2:+6073821 Msa0051910:CDS
GGTGGGTTCATGAAAGCTTT+GGG 0.397170 1_2:+6073246 Msa0051910:CDS
GCAGTTTGGGAGGTGATTAG+AGG 0.398304 1_2:+6073864 Msa0051910:CDS
AAAGATCTTAAACGCAGTTT+GGG 0.404490 1_2:+6073851 Msa0051910:CDS
TTCTTGCCTCAAGTCCTTGT+GGG 0.405312 1_2:-6070947 None:intergenic
TACACACATGAATATATATA+AGG 0.405787 1_2:-6074244 None:intergenic
TCAAGTAATGGAGGGCTCAT+TGG 0.410377 1_2:+6071086 Msa0051910:CDS
GTCGTCGGCGGAGTTCTTAT+CGG 0.410892 1_2:+6071295 Msa0051910:CDS
AAGAGGGATTTGTCATCATA+AGG 0.413128 1_2:-6073615 None:intergenic
TACCTATAACAAATGGTAGA+AGG 0.413520 1_2:-6073890 None:intergenic
TTGGAGACATGTTGGAGTCT+TGG 0.414649 1_2:+6071051 Msa0051910:CDS
ATATTAACAGGGCATAGTTT+GGG 0.421807 1_2:+6073390 Msa0051910:CDS
GTAAAGAGTATAAACAGAAT+TGG 0.425012 1_2:+6073910 Msa0051910:CDS
AATGCAACCACAATCAAGTT+TGG 0.425076 1_2:-6073135 None:intergenic
TAAGGCATTTCTTAAAGCTA+TGG 0.426559 1_2:+6070806 Msa0051910:exon
GGATCACTGGCACTGGGAAA+TGG 0.427709 1_2:-6074223 None:intergenic
CTTAATTGTTTATCAAGTAA+TGG 0.429403 1_2:+6071074 Msa0051910:CDS
CCGTTGTTAGATCAGTTAGA+AGG 0.435975 1_2:+6073465 Msa0051910:CDS
AACTTCTCGTCTCCAACTCT+TGG 0.437079 1_2:-6073507 None:intergenic
TTCCATTGCACAGCGTCAAA+TGG 0.446017 1_2:-6073171 None:intergenic
TTCATGAATAAATTAATCAA+TGG 0.450241 1_2:+6074193 Msa0051910:three_prime_UTR
CCATGCATCTTACCCACGTT+TGG 0.451550 1_2:-6073225 None:intergenic
GCATAGACATTAGTCATCCT+TGG 0.456552 1_2:-6074054 None:intergenic
CAAGAAAATTTCGACAAAGA+TGG 0.458817 1_2:+6070964 Msa0051910:CDS
AAATGTGTCGATTCGGTTGA+AGG 0.459262 1_2:-6074085 None:intergenic
TGGTGGGTTCATGAAAGCTT+TGG 0.466070 1_2:+6073245 Msa0051910:CDS
GTGAAATGAGCTGGTAGTCC+TGG 0.467415 1_2:-6073969 None:intergenic
AAGGCATTTCTTAAAGCTAT+GGG 0.468246 1_2:+6070807 Msa0051910:exon
TATATAAGGATCACTGGCAC+TGG 0.469673 1_2:-6074230 None:intergenic
TACTCTTTACCTATAACAAA+TGG 0.472622 1_2:-6073897 None:intergenic
GAAAATTATTGGAGACATGT+TGG 0.474385 1_2:+6071043 Msa0051910:CDS
GTATAAACAGAATTGGTTCA+TGG 0.475060 1_2:+6073917 Msa0051910:CDS
TTGTCATCATAAGGGATCCT+AGG 0.481249 1_2:-6073606 None:intergenic
AGCAAAATCAGTATGTGATA+GGG 0.487797 1_2:+6074293 Msa0051910:three_prime_UTR
GCATAGTTTGGGTGGAGCAT+TGG 0.487894 1_2:+6073401 Msa0051910:CDS
GATCCTAGGAACCATATCAT+TGG 0.488876 1_2:-6073592 None:intergenic
CGTAGTAAGCATATTGATGC+TGG 0.489114 1_2:-6073314 None:intergenic
AAAGCAAGTGTTGTGGAACT+AGG 0.494529 1_2:+6070876 Msa0051910:CDS
ACTCCAATGATATGGTTCCT+AGG 0.497236 1_2:+6073589 Msa0051910:CDS
ATAAGGATGTAAAGTACAAA+GGG 0.499364 1_2:+6071366 Msa0051910:CDS
GCAACTGAGAGAAATGTTGA+AGG 0.501125 1_2:+6073347 Msa0051910:CDS
GTAGATTTCATACCTGCCCT+TGG 0.504655 1_2:-6073680 None:intergenic
CTCCATTTGACGCTGTGCAA+TGG 0.504884 1_2:+6073169 Msa0051910:CDS
AGCTTCATTGATTGCCCACA+AGG 0.512388 1_2:+6070933 Msa0051910:CDS
GCGGAGTTCTTATCGGTGGT+TGG 0.517251 1_2:+6071302 Msa0051910:CDS
GGAACAGAAATGTGTCGATT+CGG 0.518961 1_2:-6074092 None:intergenic
AGAGGGATTTGTCATCATAA+GGG 0.519798 1_2:-6073614 None:intergenic
CAAAGGGTTACTATCTATCA+TGG 0.525614 1_2:+6071382 Msa0051910:CDS
AATCAAGTTTGGCTCAGACT+TGG 0.525772 1_2:-6073124 None:intergenic
ACATTTGGGCAACCAAGAGT+TGG 0.528038 1_2:+6073495 Msa0051910:CDS
TGAATATATATAAGGATCAC+TGG 0.529826 1_2:-6074236 None:intergenic
AAACAGACGTTGATATCTCC+TGG 0.531593 1_2:+6073193 Msa0051910:CDS
TTATGTCAATGCTACCCGAC+TGG 0.531631 1_2:+6073998 Msa0051910:CDS
CATAAGGATGTAAAGTACAA+AGG 0.532579 1_2:+6071365 Msa0051910:CDS
CAACAGCTTGTACCAAGGGC+AGG 0.538318 1_2:+6073668 Msa0051910:CDS
GACTGAAGTGCTTAAAGAAG+AGG 0.539336 1_2:-6073632 None:intergenic
TTTCTTGCCTCAAGTCCTTG+TGG 0.545498 1_2:-6070948 None:intergenic
CACGTTTGGTAGGTCATACC+AGG 0.546792 1_2:-6073211 None:intergenic
CTAAGTTTGATGAAAACAAG+AGG 0.547488 1_2:-6070902 None:intergenic
AATTGTTTATCAAGTAATGG+AGG 0.560190 1_2:+6071077 Msa0051910:CDS
TGAAATCCAGATTCTGGAGG+AGG 0.561254 1_2:+6073788 Msa0051910:intron
TAATCTGCAGTGAAATGAGC+TGG 0.562925 1_2:-6073978 None:intergenic
ATTGTTTATCAAGTAATGGA+GGG 0.563370 1_2:+6071078 Msa0051910:CDS
CCTAGAGCTTCTAATTTCCA+AGG 0.565181 1_2:+6074037 Msa0051910:CDS
CTGGTATGACCTACCAAACG+TGG 0.574732 1_2:+6073212 Msa0051910:CDS
CCTTGGAAATTAGAAGCTCT+AGG 0.576959 1_2:-6074037 None:intergenic
TGATTGCCCACAAGGACTTG+AGG 0.576965 1_2:+6070941 Msa0051910:CDS
GCAAAATCAGTATGTGATAG+GGG 0.577381 1_2:+6074294 Msa0051910:three_prime_UTR
TATGTCAATGCTACCCGACT+GGG 0.579643 1_2:+6073999 Msa0051910:CDS
GATCTTAAACGCAGTTTGGG+AGG 0.582036 1_2:+6073854 Msa0051910:CDS
ACTGAAGTGCTTAAAGAAGA+GGG 0.583297 1_2:-6073631 None:intergenic
GCATCTTACCCACGTTTGGT+AGG 0.584299 1_2:-6073221 None:intergenic
CTAAATCAACTCTTGTGTCA+AGG 0.587660 1_2:-6071328 None:intergenic
ATGGAGATTATCTATTTCTG+AGG 0.588396 1_2:+6070847 Msa0051910:CDS
GACTATTAGAGAACGGTGGA+TGG 0.590336 1_2:+6073268 Msa0051910:CDS
GGTTCCGAACAACAAATACA+TGG 0.590798 1_2:+6070828 Msa0051910:CDS
TTTGTCTAAGAATCCCAGTC+GGG 0.593613 1_2:-6074012 None:intergenic
TTAACAGGGCATAGTTTGGG+TGG 0.601661 1_2:+6073393 Msa0051910:CDS
ATATAAGGATCACTGGCACT+GGG 0.615996 1_2:-6074229 None:intergenic
GTCGGCGGAGTTCTTATCGG+TGG 0.625309 1_2:+6071298 Msa0051910:CDS
CCAAACGTGGGTAAGATGCA+TGG 0.629496 1_2:+6073225 Msa0051910:CDS
GCTTTGGGACTATTAGAGAA+CGG 0.641017 1_2:+6073261 Msa0051910:CDS
ACGTGGGTAAGATGCATGGT+GGG 0.641063 1_2:+6073229 Msa0051910:CDS
GTCTGAGCCAAACTTGATTG+TGG 0.648999 1_2:+6073128 Msa0051910:CDS
GTTTGTCTAAGAATCCCAGT+CGG 0.657643 1_2:-6074013 None:intergenic
TATTGAAATCCAGATTCTGG+AGG 0.663481 1_2:+6073785 Msa0051910:intron
AATGCAGTTAGAAATAATTG+GGG 0.668177 1_2:+6071443 Msa0051910:CDS
AACGTGGGTAAGATGCATGG+TGG 0.670345 1_2:+6073228 Msa0051910:CDS
CCTTCTAACTGATCTAACAA+CGG 0.677853 1_2:-6073465 None:intergenic
GATAACACCGGAAAAGTCGT+CGG 0.682426 1_2:+6071280 Msa0051910:CDS
TGCAGGAGAGGTGATAACAC+CGG 0.684829 1_2:+6071268 Msa0051910:intron
TTGGGACTATTAGAGAACGG+TGG 0.689567 1_2:+6073264 Msa0051910:CDS
ATGCAAAATTCATATTAACA+GGG 0.695453 1_2:+6073379 Msa0051910:CDS
TGGTATGACCTACCAAACGT+GGG 0.704433 1_2:+6073213 Msa0051910:CDS
AACACCGGAAAAGTCGTCGG+CGG 0.722840 1_2:+6071283 Msa0051910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAAGTTTAATTTTTTTG+AGG + chr1_2:6071734-6071753 Msa0051910:intron 10.0%
!!! ATTTAATAGTTTTATGTTAT+GGG - chr1_2:6072520-6072539 None:intergenic 10.0%
!!! TATTTAATAGTTTTATGTTA+TGG - chr1_2:6072521-6072540 None:intergenic 10.0%
!! AATTAAGGATAAATTAAAAT+AGG - chr1_2:6072714-6072733 None:intergenic 10.0%
!!! TATTTTAATTTATCCTTAAT+TGG + chr1_2:6072713-6072732 Msa0051910:intron 10.0%
!!! ATTTTAATTTATCCTTAATT+GGG + chr1_2:6072714-6072733 Msa0051910:intron 10.0%
!!! GTTTACATGAATTTAAATTT+TGG + chr1_2:6071242-6071261 Msa0051910:intron 15.0%
!! ATTTACTCTAAATAAAACTA+TGG - chr1_2:6071530-6071549 None:intergenic 15.0%
!!! AATTATATATTGCATTTTGA+AGG + chr1_2:6071840-6071859 Msa0051910:intron 15.0%
!! AAGGAAAAATTTGATTATAT+AGG + chr1_2:6071859-6071878 Msa0051910:intron 15.0%
!!! TTATAATTTTTTTATGTCGA+AGG + chr1_2:6072308-6072327 Msa0051910:intron 15.0%
!! ATTTCTCTAATTTAAATGAA+GGG + chr1_2:6072881-6072900 Msa0051910:intron 15.0%
!!! ATTTTATCATTTGAAAATCA+TGG - chr1_2:6072983-6073002 None:intergenic 15.0%
!!! TGATTTTCAAATGATAAAAT+TGG + chr1_2:6072983-6073002 Msa0051910:intron 15.0%
!!! GATTTTCAAATGATAAAATT+GGG + chr1_2:6072984-6073003 Msa0051910:intron 15.0%
!! AACATCATAATGTAAAAAAA+CGG - chr1_2:6074116-6074135 None:intergenic 15.0%
!! TGATCAATTATTGTAAAAAT+AGG + chr1_2:6074147-6074166 Msa0051910:three_prime_UTR 15.0%
!! TTCATGAATAAATTAATCAA+TGG + chr1_2:6074193-6074212 Msa0051910:three_prime_UTR 15.0%
!! CTTAATTGTTTATCAAGTAA+TGG + chr1_2:6071074-6071093 Msa0051910:CDS 20.0%
!!! TACATGAATTTAAATTTTGG+TGG + chr1_2:6071245-6071264 Msa0051910:intron 20.0%
!! AGACAAAAATATTCATCATA+AGG + chr1_2:6071349-6071368 Msa0051910:CDS 20.0%
!! GTATATCTTACAAATTATGA+AGG - chr1_2:6071661-6071680 None:intergenic 20.0%
!!! GGAAAAATTCTAAAATTATG+AGG - chr1_2:6072098-6072117 None:intergenic 20.0%
!!! AAAATATGGCATTTTTTTAG+TGG + chr1_2:6072335-6072354 Msa0051910:intron 20.0%
!! TCAATATATAACACTTATTG+TGG + chr1_2:6072360-6072379 Msa0051910:intron 20.0%
!! GTGTTTATAATATTATTGAC+AGG + chr1_2:6072542-6072561 Msa0051910:intron 20.0%
!! CATTTCTCTAATTTAAATGA+AGG + chr1_2:6072880-6072899 Msa0051910:intron 20.0%
!! ATGCAAAATTCATATTAACA+GGG + chr1_2:6073379-6073398 Msa0051910:CDS 20.0%
!! TACACACATGAATATATATA+AGG - chr1_2:6074247-6074266 None:intergenic 20.0%
!! CTTACAATTTTCTTTTGCTA+AGG + chr1_2:6070788-6070807 Msa0051910:five_prime_UTR 25.0%
!!! TCTCCAATAATTTTCAAGAA+GGG - chr1_2:6071038-6071057 None:intergenic 25.0%
! AATTGTTTATCAAGTAATGG+AGG + chr1_2:6071077-6071096 Msa0051910:CDS 25.0%
!! ATTGTTTATCAAGTAATGGA+GGG + chr1_2:6071078-6071097 Msa0051910:CDS 25.0%
! ATAAGGATGTAAAGTACAAA+GGG + chr1_2:6071366-6071385 Msa0051910:CDS 25.0%
! CAATGCAGTTAGAAATAATT+GGG + chr1_2:6071442-6071461 Msa0051910:CDS 25.0%
! AATGCAGTTAGAAATAATTG+GGG + chr1_2:6071443-6071462 Msa0051910:CDS 25.0%
! TGATTATTTACCAATCAACT+TGG + chr1_2:6071559-6071578 Msa0051910:intron 25.0%
!!! TAAGATAAAACCAAGTTGAT+TGG - chr1_2:6071572-6071591 None:intergenic 25.0%
! TTTATCTTATTGTTTGCAGA+TGG + chr1_2:6071583-6071602 Msa0051910:intron 25.0%
! ATCTTACAAATTATGAAGGA+TGG - chr1_2:6071657-6071676 None:intergenic 25.0%
! TTTCCATCAATGTAAATGTT+AGG - chr1_2:6072009-6072028 None:intergenic 25.0%
!!! TATGATGATGGCAAATTATA+TGG - chr1_2:6072119-6072138 None:intergenic 25.0%
! TTAGAATGTGAATATGATGA+TGG - chr1_2:6072131-6072150 None:intergenic 25.0%
!!! TATTTTTCCTTTCAAGTTGA+TGG + chr1_2:6072236-6072255 Msa0051910:intron 25.0%
! ATGTCGAAGGAAAAAAAATA+TGG + chr1_2:6072321-6072340 Msa0051910:intron 25.0%
! TGAAAAAGTCAAATATGTGT+AGG - chr1_2:6072577-6072596 None:intergenic 25.0%
! TATAAACTAAACATGTCACA+CGG - chr1_2:6072656-6072675 None:intergenic 25.0%
! AATTAAAATAGGTCAATGAG+AGG - chr1_2:6072703-6072722 None:intergenic 25.0%
! AATGTTAAAGAATGTCCTTA+GGG - chr1_2:6072864-6072883 None:intergenic 25.0%
! AAATGTTAAAGAATGTCCTT+AGG - chr1_2:6072865-6072884 None:intergenic 25.0%
! ATCATTTGAAAATCATGGAA+GGG - chr1_2:6072978-6072997 None:intergenic 25.0%
! TATCATTTGAAAATCATGGA+AGG - chr1_2:6072979-6072998 None:intergenic 25.0%
! AATGATAAAATTGGGATATC+TGG + chr1_2:6072992-6073011 Msa0051910:intron 25.0%
! CTTCTTTCATCAATTTCTTT+AGG - chr1_2:6073294-6073313 None:intergenic 25.0%
! AGAAATGTTGAAGGAAAATA+AGG + chr1_2:6073356-6073375 Msa0051910:CDS 25.0%
! GATGCAAAATTCATATTAAC+AGG + chr1_2:6073378-6073397 Msa0051910:CDS 25.0%
!!! TTAGAAGGTGTTTATACATT+TGG + chr1_2:6073480-6073499 Msa0051910:CDS 25.0%
!!! TAGAAGGTGTTTATACATTT+GGG + chr1_2:6073481-6073500 Msa0051910:CDS 25.0%
! ATATGTTTACTCCAATGATA+TGG + chr1_2:6073581-6073600 Msa0051910:CDS 25.0%
! AAAGAGAAATAGTTCTTGTT+TGG - chr1_2:6073816-6073835 None:intergenic 25.0%
! TACTCTTTACCTATAACAAA+TGG - chr1_2:6073900-6073919 None:intergenic 25.0%
!! GTAAAGAGTATAAACAGAAT+TGG + chr1_2:6073910-6073929 Msa0051910:CDS 25.0%
! TGAATATATATAAGGATCAC+TGG - chr1_2:6074239-6074258 None:intergenic 25.0%
! TAAGGCATTTCTTAAAGCTA+TGG + chr1_2:6070806-6070825 Msa0051910:exon 30.0%
! AAGGCATTTCTTAAAGCTAT+GGG + chr1_2:6070807-6070826 Msa0051910:exon 30.0%
!! ATCTCCATGTATTTGTTGTT+CGG - chr1_2:6070835-6070854 None:intergenic 30.0%
!! ATGGAGATTATCTATTTCTG+AGG + chr1_2:6070847-6070866 Msa0051910:CDS 30.0%
CTAAGTTTGATGAAAACAAG+AGG - chr1_2:6070905-6070924 None:intergenic 30.0%
CAAGAAAATTTCGACAAAGA+TGG + chr1_2:6070964-6070983 Msa0051910:CDS 30.0%
!! AATTTTCAAGAAGGGATCTA+TGG - chr1_2:6071030-6071049 None:intergenic 30.0%
GATCCCTTCTTGAAAATTAT+TGG + chr1_2:6071032-6071051 Msa0051910:CDS 30.0%
!! GTCTCCAATAATTTTCAAGA+AGG - chr1_2:6071039-6071058 None:intergenic 30.0%
GAAAATTATTGGAGACATGT+TGG + chr1_2:6071043-6071062 Msa0051910:CDS 30.0%
CTCTTCTTCAACTTTCTTAA+AGG + chr1_2:6071110-6071129 Msa0051910:CDS 30.0%
!!! AATTTAAATTTTGGTGGTGC+AGG + chr1_2:6071251-6071270 Msa0051910:intron 30.0%
CATAAGGATGTAAAGTACAA+AGG + chr1_2:6071365-6071384 Msa0051910:CDS 30.0%
GCAATGCAGTTAGAAATAAT+TGG + chr1_2:6071441-6071460 Msa0051910:CDS 30.0%
! TTGTTTGCAGATGGAATTTT+TGG + chr1_2:6071592-6071611 Msa0051910:intron 30.0%
! TGTTTGCAGATGGAATTTTT+GGG + chr1_2:6071593-6071612 Msa0051910:intron 30.0%
GATATACGAACGTAGAAATT+TGG + chr1_2:6071674-6071693 Msa0051910:intron 30.0%
ATGTTCTCAAAAGTCAACTT+AGG - chr1_2:6071772-6071791 None:intergenic 30.0%
GAAAATAATGCAATGCTACT+AGG + chr1_2:6071926-6071945 Msa0051910:intron 30.0%
TTTATAACAGCATTGTTTCG+TGG + chr1_2:6071957-6071976 Msa0051910:intron 30.0%
CATCAATGTAAATGTTAGGT+GGG - chr1_2:6072005-6072024 None:intergenic 30.0%
! GTCATTCTCAACATCAATTT+TGG - chr1_2:6072173-6072192 None:intergenic 30.0%
TTAACTACCATCAACTTGAA+AGG - chr1_2:6072246-6072265 None:intergenic 30.0%
ATGTCACATGTATAGAGATA+TGG - chr1_2:6072612-6072631 None:intergenic 30.0%
TTGTTAGCATAACCCAATTA+AGG - chr1_2:6072729-6072748 None:intergenic 30.0%
!! CTTTTGTAGACTCCATTTTT+TGG - chr1_2:6073086-6073105 None:intergenic 30.0%
ATATTAACAGGGCATAGTTT+GGG + chr1_2:6073390-6073409 Msa0051910:CDS 30.0%
TTTGCTTTACTTGTCTAGAA+AGG + chr1_2:6073736-6073755 Msa0051910:intron 30.0%
ATGTATTGAAATCCAGATTC+TGG + chr1_2:6073782-6073801 Msa0051910:intron 30.0%
! AGAACTATTTCTCTTTGTTC+TGG + chr1_2:6073820-6073839 Msa0051910:CDS 30.0%
! GAACTATTTCTCTTTGTTCT+GGG + chr1_2:6073821-6073840 Msa0051910:CDS 30.0%
AAAGATCTTAAACGCAGTTT+GGG + chr1_2:6073851-6073870 Msa0051910:CDS 30.0%
!! TTCCTTCTACCATTTGTTAT+AGG + chr1_2:6073888-6073907 Msa0051910:CDS 30.0%
TACCTATAACAAATGGTAGA+AGG - chr1_2:6073893-6073912 None:intergenic 30.0%
! GTATAAACAGAATTGGTTCA+TGG + chr1_2:6073917-6073936 Msa0051910:CDS 30.0%
! TGCTTCAATGATACAACTTT+TGG - chr1_2:6074277-6074296 None:intergenic 30.0%
AAGCAAAATCAGTATGTGAT+AGG + chr1_2:6074292-6074311 Msa0051910:three_prime_UTR 30.0%
AGCAAAATCAGTATGTGATA+GGG + chr1_2:6074293-6074312 Msa0051910:three_prime_UTR 30.0%
CTAAATCAACTCTTGTGTCA+AGG - chr1_2:6071331-6071350 None:intergenic 35.0%
CAAAGGGTTACTATCTATCA+TGG + chr1_2:6071382-6071401 Msa0051910:CDS 35.0%
! GTTTGCAGATGGAATTTTTG+GGG + chr1_2:6071594-6071613 Msa0051910:intron 35.0%
ACAACGTAAGCACATGTATT+TGG + chr1_2:6071806-6071825 Msa0051910:intron 35.0%
CAACGTAAGCACATGTATTT+GGG + chr1_2:6071807-6071826 Msa0051910:intron 35.0%
AACGTAAGCACATGTATTTG+GGG + chr1_2:6071808-6071827 Msa0051910:intron 35.0%
CCATCAATGTAAATGTTAGG+TGG - chr1_2:6072006-6072025 None:intergenic 35.0%
CCACCTAACATTTACATTGA+TGG + chr1_2:6072003-6072022 Msa0051910:intron 35.0%
AGTCAAATATGTGTAGGACT+AGG - chr1_2:6072571-6072590 None:intergenic 35.0%
AAAGAATGTCCTTAGGGTAT+TGG - chr1_2:6072858-6072877 None:intergenic 35.0%
!!! CCATTTTTTGGTAATCTGCA+TGG - chr1_2:6073074-6073093 None:intergenic 35.0%
CCATGCAGATTACCAAAAAA+TGG + chr1_2:6073071-6073090 Msa0051910:intron 35.0%
AATGCAACCACAATCAAGTT+TGG - chr1_2:6073138-6073157 None:intergenic 35.0%
TTGATTGTGGTTGCATTTAG+AGG + chr1_2:6073141-6073160 Msa0051910:CDS 35.0%
CATATTAACAGGGCATAGTT+TGG + chr1_2:6073389-6073408 Msa0051910:CDS 35.0%
CCTTCTAACTGATCTAACAA+CGG - chr1_2:6073468-6073487 None:intergenic 35.0%
AGAGGGATTTGTCATCATAA+GGG - chr1_2:6073617-6073636 None:intergenic 35.0%
AAGAGGGATTTGTCATCATA+AGG - chr1_2:6073618-6073637 None:intergenic 35.0%
! ACTGAAGTGCTTAAAGAAGA+GGG - chr1_2:6073634-6073653 None:intergenic 35.0%
AAGCTGTTGAAAAACAGACA+AGG - chr1_2:6073657-6073676 None:intergenic 35.0%
!! TTTTTCAACAGCTTGTACCA+AGG + chr1_2:6073663-6073682 Msa0051910:CDS 35.0%
! TTTTCAACAGCTTGTACCAA+GGG + chr1_2:6073664-6073683 Msa0051910:CDS 35.0%
TATTGAAATCCAGATTCTGG+AGG + chr1_2:6073785-6073804 Msa0051910:intron 35.0%
! CAAACTGCGTTTAAGATCTT+TGG - chr1_2:6073852-6073871 None:intergenic 35.0%
CAAAGATCTTAAACGCAGTT+TGG + chr1_2:6073850-6073869 Msa0051910:CDS 35.0%
! CTTGTTGGATTGATAATTCC+AGG + chr1_2:6073951-6073970 Msa0051910:CDS 35.0%
GCAAAATCAGTATGTGATAG+GGG + chr1_2:6074294-6074313 Msa0051910:three_prime_UTR 35.0%
GGTTCCGAACAACAAATACA+TGG + chr1_2:6070828-6070847 Msa0051910:CDS 40.0%
!!! TCCACAACACTTGCTTTTTG+TGG - chr1_2:6070873-6070892 None:intergenic 40.0%
! AAAGCAAGTGTTGTGGAACT+AGG + chr1_2:6070876-6070895 Msa0051910:CDS 40.0%
!!! TTTTGGGGCTATACAGCTTT+TGG + chr1_2:6071609-6071628 Msa0051910:CDS 40.0%
AGGTGGGAAACCAATTGTTA+GGG - chr1_2:6071989-6072008 None:intergenic 40.0%
TAGGTGGGAAACCAATTGTT+AGG - chr1_2:6071990-6072009 None:intergenic 40.0%
TCCTCTTTACCAATACCCTA+AGG + chr1_2:6072846-6072865 Msa0051910:intron 40.0%
!! TCCTTAGGGTATTGGTAAAG+AGG - chr1_2:6072850-6072869 None:intergenic 40.0%
! AATCAAGTTTGGCTCAGACT+TGG - chr1_2:6073127-6073146 None:intergenic 40.0%
AAACAGACGTTGATATCTCC+TGG + chr1_2:6073193-6073212 Msa0051910:CDS 40.0%
!! GCTTTGGGACTATTAGAGAA+CGG + chr1_2:6073261-6073280 Msa0051910:CDS 40.0%
CGTAGTAAGCATATTGATGC+TGG - chr1_2:6073317-6073336 None:intergenic 40.0%
GCAACTGAGAGAAATGTTGA+AGG + chr1_2:6073347-6073366 Msa0051910:CDS 40.0%
CCGTTGTTAGATCAGTTAGA+AGG + chr1_2:6073465-6073484 Msa0051910:CDS 40.0%
ACTCCAATGATATGGTTCCT+AGG + chr1_2:6073589-6073608 Msa0051910:CDS 40.0%
GATCCTAGGAACCATATCAT+TGG - chr1_2:6073595-6073614 None:intergenic 40.0%
TTGTCATCATAAGGGATCCT+AGG - chr1_2:6073609-6073628 None:intergenic 40.0%
! GACTGAAGTGCTTAAAGAAG+AGG - chr1_2:6073635-6073654 None:intergenic 40.0%
! ATTGGTTCATGGCATTGTTC+AGG + chr1_2:6073928-6073947 Msa0051910:CDS 40.0%
TAATCTGCAGTGAAATGAGC+TGG - chr1_2:6073981-6074000 None:intergenic 40.0%
TTTGTCTAAGAATCCCAGTC+GGG - chr1_2:6074015-6074034 None:intergenic 40.0%
GTTTGTCTAAGAATCCCAGT+CGG - chr1_2:6074016-6074035 None:intergenic 40.0%
CCTTGGAAATTAGAAGCTCT+AGG - chr1_2:6074040-6074059 None:intergenic 40.0%
CCTAGAGCTTCTAATTTCCA+AGG + chr1_2:6074037-6074056 Msa0051910:CDS 40.0%
GCATAGACATTAGTCATCCT+TGG - chr1_2:6074057-6074076 None:intergenic 40.0%
!! AAATGTGTCGATTCGGTTGA+AGG - chr1_2:6074088-6074107 None:intergenic 40.0%
!! GGAACAGAAATGTGTCGATT+CGG - chr1_2:6074095-6074114 None:intergenic 40.0%
ATATAAGGATCACTGGCACT+GGG - chr1_2:6074232-6074251 None:intergenic 40.0%
TATATAAGGATCACTGGCAC+TGG - chr1_2:6074233-6074252 None:intergenic 40.0%
! GCCACAAAAAGCAAGTGTTG+TGG + chr1_2:6070869-6070888 Msa0051910:CDS 45.0%
! AGCTTCATTGATTGCCCACA+AGG + chr1_2:6070933-6070952 Msa0051910:CDS 45.0%
TTCTTGCCTCAAGTCCTTGT+GGG - chr1_2:6070950-6070969 None:intergenic 45.0%
TTTCTTGCCTCAAGTCCTTG+TGG - chr1_2:6070951-6070970 None:intergenic 45.0%
TTGGAGACATGTTGGAGTCT+TGG + chr1_2:6071051-6071070 Msa0051910:CDS 45.0%
! TCAAGTAATGGAGGGCTCAT+TGG + chr1_2:6071086-6071105 Msa0051910:CDS 45.0%
!!! AAATTTTGGTGGTGCAGGAG+AGG + chr1_2:6071256-6071275 Msa0051910:intron 45.0%
GATAACACCGGAAAAGTCGT+CGG + chr1_2:6071280-6071299 Msa0051910:CDS 45.0%
!! GGGCTATACAGCTTTTGGAA+CGG + chr1_2:6071614-6071633 Msa0051910:CDS 45.0%
GTGGAATCTGCCCTAACAAT+TGG + chr1_2:6071976-6071995 Msa0051910:intron 45.0%
GTCTGAGCCAAACTTGATTG+TGG + chr1_2:6073128-6073147 Msa0051910:CDS 45.0%
TTCCATTGCACAGCGTCAAA+TGG - chr1_2:6073174-6073193 None:intergenic 45.0%
TGGTATGACCTACCAAACGT+GGG + chr1_2:6073213-6073232 Msa0051910:CDS 45.0%
!! TGGTGGGTTCATGAAAGCTT+TGG + chr1_2:6073245-6073264 Msa0051910:CDS 45.0%
! GGTGGGTTCATGAAAGCTTT+GGG + chr1_2:6073246-6073265 Msa0051910:CDS 45.0%
TTGGGACTATTAGAGAACGG+TGG + chr1_2:6073264-6073283 Msa0051910:CDS 45.0%
GACTATTAGAGAACGGTGGA+TGG + chr1_2:6073268-6073287 Msa0051910:CDS 45.0%
TTAACAGGGCATAGTTTGGG+TGG + chr1_2:6073393-6073412 Msa0051910:CDS 45.0%
ACATTTGGGCAACCAAGAGT+TGG + chr1_2:6073495-6073514 Msa0051910:CDS 45.0%
AACTTCTCGTCTCCAACTCT+TGG - chr1_2:6073510-6073529 None:intergenic 45.0%
AGAGTTGGAGACGAGAAGTT+TGG + chr1_2:6073510-6073529 Msa0051910:CDS 45.0%
GTAGATTTCATACCTGCCCT+TGG - chr1_2:6073683-6073702 None:intergenic 45.0%
! TGAAATCCAGATTCTGGAGG+AGG + chr1_2:6073788-6073807 Msa0051910:intron 45.0%
GATCTTAAACGCAGTTTGGG+AGG + chr1_2:6073854-6073873 Msa0051910:CDS 45.0%
ATGGCATTGTTCAGGCTTGT+TGG + chr1_2:6073936-6073955 Msa0051910:CDS 45.0%
TTATGTCAATGCTACCCGAC+TGG + chr1_2:6073998-6074017 Msa0051910:CDS 45.0%
TATGTCAATGCTACCCGACT+GGG + chr1_2:6073999-6074018 Msa0051910:CDS 45.0%
TGATTGCCCACAAGGACTTG+AGG + chr1_2:6070941-6070960 Msa0051910:CDS 50.0%
TGCAGGAGAGGTGATAACAC+CGG + chr1_2:6071268-6071287 Msa0051910:intron 50.0%
CTCCATTTGACGCTGTGCAA+TGG + chr1_2:6073169-6073188 Msa0051910:CDS 50.0%
CACGTTTGGTAGGTCATACC+AGG - chr1_2:6073214-6073233 None:intergenic 50.0%
CTGGTATGACCTACCAAACG+TGG + chr1_2:6073212-6073231 Msa0051910:CDS 50.0%
GCATCTTACCCACGTTTGGT+AGG - chr1_2:6073224-6073243 None:intergenic 50.0%
CCATGCATCTTACCCACGTT+TGG - chr1_2:6073228-6073247 None:intergenic 50.0%
CCAAACGTGGGTAAGATGCA+TGG + chr1_2:6073225-6073244 Msa0051910:CDS 50.0%
AACGTGGGTAAGATGCATGG+TGG + chr1_2:6073228-6073247 Msa0051910:CDS 50.0%
ACGTGGGTAAGATGCATGGT+GGG + chr1_2:6073229-6073248 Msa0051910:CDS 50.0%
GCATAGTTTGGGTGGAGCAT+TGG + chr1_2:6073401-6073420 Msa0051910:CDS 50.0%
GCAGTTTGGGAGGTGATTAG+AGG + chr1_2:6073864-6073883 Msa0051910:CDS 50.0%
GTGAAATGAGCTGGTAGTCC+TGG - chr1_2:6073972-6073991 None:intergenic 50.0%
AACACCGGAAAAGTCGTCGG+CGG + chr1_2:6071283-6071302 Msa0051910:CDS 55.0%
! AACTCCGCCGACGACTTTTC+CGG - chr1_2:6071290-6071309 None:intergenic 55.0%
GTCGTCGGCGGAGTTCTTAT+CGG + chr1_2:6071295-6071314 Msa0051910:CDS 55.0%
GCGGAGTTCTTATCGGTGGT+TGG + chr1_2:6071302-6071321 Msa0051910:CDS 55.0%
CAACAGCTTGTACCAAGGGC+AGG + chr1_2:6073668-6073687 Msa0051910:CDS 55.0%
TTGGCTCCTCCTCCAGAATC+TGG - chr1_2:6073797-6073816 None:intergenic 55.0%
! GGATCACTGGCACTGGGAAA+TGG - chr1_2:6074226-6074245 None:intergenic 55.0%
GTCGGCGGAGTTCTTATCGG+TGG + chr1_2:6071298-6071317 Msa0051910:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 6070778 6074335 6070778 ID=Msa0051910;Name=Msa0051910
chr1_2 mRNA 6070778 6074335 6070778 ID=Msa0051910-mRNA-1;Parent=Msa0051910;Name=Msa0051910-mRNA-1;_AED=0.09;_eAED=0.09;_QI=47|1|1|1|1|1|5|268|471
chr1_2 exon 6070778 6071131 6070778 ID=Msa0051910-mRNA-1:exon:1940;Parent=Msa0051910-mRNA-1
chr1_2 exon 6071273 6071466 6071273 ID=Msa0051910-mRNA-1:exon:1941;Parent=Msa0051910-mRNA-1
chr1_2 exon 6071602 6071635 6071602 ID=Msa0051910-mRNA-1:exon:1942;Parent=Msa0051910-mRNA-1
chr1_2 exon 6073079 6073689 6073079 ID=Msa0051910-mRNA-1:exon:1943;Parent=Msa0051910-mRNA-1
chr1_2 exon 6073798 6074335 6073798 ID=Msa0051910-mRNA-1:exon:1944;Parent=Msa0051910-mRNA-1
chr1_2 five_prime_UTR 6070778 6070824 6070778 ID=Msa0051910-mRNA-1:five_prime_utr;Parent=Msa0051910-mRNA-1
chr1_2 CDS 6070825 6071131 6070825 ID=Msa0051910-mRNA-1:cds;Parent=Msa0051910-mRNA-1
chr1_2 CDS 6071273 6071466 6071273 ID=Msa0051910-mRNA-1:cds;Parent=Msa0051910-mRNA-1
chr1_2 CDS 6071602 6071635 6071602 ID=Msa0051910-mRNA-1:cds;Parent=Msa0051910-mRNA-1
chr1_2 CDS 6073079 6073689 6073079 ID=Msa0051910-mRNA-1:cds;Parent=Msa0051910-mRNA-1
chr1_2 CDS 6073798 6074067 6073798 ID=Msa0051910-mRNA-1:cds;Parent=Msa0051910-mRNA-1
chr1_2 three_prime_UTR 6074068 6074335 6074068 ID=Msa0051910-mRNA-1:three_prime_utr;Parent=Msa0051910-mRNA-1
Gene Sequence

>Msa0051910

ATGGGTTCCGAACAACAAATACATGGAGATTATCTATTTCTGAGGCCACAAAAAGCAAGTGTTGTGGAACTAGGAAGCCTCTTGTTTTCATCAAACTTAGCAAATAGAAGCTTCATTGATTGCCCACAAGGACTTGAGGCAAGAAAATTTCGACAAAGATGGCTTCTCTTTACTTCAGTTGTTGCACAAATTGTTCTTGTTGCCATAGATCCCTTCTTGAAAATTATTGGAGACATGTTGGAGTCTTGGCTTAATTGTTTATCAAGTAATGGAGGGCTCATTGGACTCTTCTTCAACTTTCTTAAAGGAGAGGTGATAACACCGGAAAAGTCGTCGGCGGAGTTCTTATCGGTGGTTGGTCACCTTGACACAAGAGTTGATTTAGACAAAAATATTCATCATAAGGATGTAAAGTACAAAGGGTTACTATCTATCATGGCTTCTAAATTTTCGTACGAGAATGAACAAGTCATTAGCAATGCAGTTAGAAATAATTGGGGTATGGAATTTTTGGGGCTATACAGCTTTTGGAACGATTACCAAAAAATGGAGTCTACAAAAGCTATGATAGTGAAAGATACCAAGTCTGAGCCAAACTTGATTGTGGTTGCATTTAGAGGCACAACTCCATTTGACGCTGTGCAATGGAAAACAGACGTTGATATCTCCTGGTATGACCTACCAAACGTGGGTAAGATGCATGGTGGGTTCATGAAAGCTTTGGGACTATTAGAGAACGGTGGATGGCCTAAAGAAATTGATGAAAGAAGCCAGCATCAATATGCTTACTACGCAATTAGAGAGCAACTGAGAGAAATGTTGAAGGAAAATAAGGATGCAAAATTCATATTAACAGGGCATAGTTTGGGTGGAGCATTGGCTATTCTGTTTGTCGCAATGCTAATATTTCATGATGAAGAACCGTTGTTAGATCAGTTAGAAGGTGTTTATACATTTGGGCAACCAAGAGTTGGAGACGAGAAGTTTGGAGAGTTCATGAAAAGCAAGTTGAGAGAGTATGATGTGAAGTACTTTAGATATGTTTACTCCAATGATATGGTTCCTAGGATCCCTTATGATGACAAATCCCTCTTCTTTAAGCACTTCAGTCCTTGTCTGTTTTTCAACAGCTTGTACCAAGGGCAGATTCTGGAGGAGGAGCCAAACAAGAACTATTTCTCTTTGTTCTGGGTGATACCAAAGATCTTAAACGCAGTTTGGGAGGTGATTAGAGGTTTCCTTCTACCATTTGTTATAGGTAAAGAGTATAAACAGAATTGGTTCATGGCATTGTTCAGGCTTGTTGGATTGATAATTCCAGGACTACCAGCTCATTTCACTGCAGATTATGTCAATGCTACCCGACTGGGATTCTTAGACAAACACCTAGAGCTTCTAATTTCCAAGGATGACTAA

Protein sequence

>Msa0051910

MGSEQQIHGDYLFLRPQKASVVELGSLLFSSNLANRSFIDCPQGLEARKFRQRWLLFTSVVAQIVLVAIDPFLKIIGDMLESWLNCLSSNGGLIGLFFNFLKGEVITPEKSSAEFLSVVGHLDTRVDLDKNIHHKDVKYKGLLSIMASKFSYENEQVISNAVRNNWGMEFLGLYSFWNDYQKMESTKAMIVKDTKSEPNLIVVAFRGTTPFDAVQWKTDVDISWYDLPNVGKMHGGFMKALGLLENGGWPKEIDERSQHQYAYYAIREQLREMLKENKDAKFILTGHSLGGALAILFVAMLIFHDEEPLLDQLEGVYTFGQPRVGDEKFGEFMKSKLREYDVKYFRYVYSNDMVPRIPYDDKSLFFKHFSPCLFFNSLYQGQILEEEPNKNYFSLFWVIPKILNAVWEVIRGFLLPFVIGKEYKQNWFMALFRLVGLIIPGLPAHFTADYVNATRLGFLDKHLELLISKDD*