AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130130 MtrunA17_Chr1g0197361 89.216 612 43 4 49 660 1 589 0.0 1113
Msa0130130 MtrunA17_Chr3g0092671 63.175 611 149 12 53 660 2 539 0.0 732
Msa0130130 MtrunA17_Chr1g0197351 56.931 202 74 4 57 254 43 235 3.27e-66 225
Msa0130130 MtrunA17_Chr8g0364791 52.486 181 76 2 58 238 8 178 1.62e-64 219
Msa0130130 MtrunA17_Chr3g0130101 50.490 204 85 4 58 256 9 201 4.22e-63 213
Msa0130130 MtrunA17_Chr8g0384201 49.727 183 78 3 58 238 8 178 6.58e-60 208
Msa0130130 MtrunA17_Chr2g0309891 52.941 187 78 4 58 243 8 185 3.05e-58 200
Msa0130130 MtrunA17_Chr1g0201021 54.749 179 71 3 58 236 21 189 8.49e-57 202
Msa0130130 MtrunA17_Chr3g0109821 54.913 173 64 4 58 227 8 169 1.29e-52 192
Msa0130130 MtrunA17_Chr6g0481091 53.704 162 63 3 58 218 8 158 9.85e-52 179
Msa0130130 MtrunA17_Chr5g0433781 50.777 193 78 5 58 243 8 190 2.67e-51 188
Msa0130130 MtrunA17_Chr5g0400461 49.398 166 64 3 58 216 8 160 3.05e-47 169
Msa0130130 MtrunA17_Chr3g0128111 50.314 159 69 2 59 217 45 193 6.08e-47 166
Msa0130130 MtrunA17_Chr4g0060931 46.907 194 80 6 58 245 19 195 7.68e-47 169
Msa0130130 MtrunA17_Chr3g0091921 42.291 227 118 6 45 270 5 219 1.92e-46 166
Msa0130130 MtrunA17_Chr6g0484441 49.375 160 67 3 58 217 7 152 4.77e-46 166
Msa0130130 MtrunA17_Chr4g0054791 50.877 171 69 6 49 216 1 159 5.67e-46 166
Msa0130130 MtrunA17_Chr3g0139331 51.479 169 62 5 58 222 13 165 7.42e-46 166
Msa0130130 MtrunA17_Chr5g0428991 49.367 158 70 2 59 216 28 175 2.03e-45 171
Msa0130130 MtrunA17_Chr1g0147421 47.305 167 73 3 58 222 29 182 5.90e-45 164
Msa0130130 MtrunA17_Chr3g0128151 49.686 159 70 2 59 217 25 173 9.76e-45 169
Msa0130130 MtrunA17_Chr7g0217721 45.550 191 94 4 45 228 8 195 4.22e-44 161
Msa0130130 MtrunA17_Chr6g0453451 42.500 200 99 6 58 257 22 205 1.28e-43 159
Msa0130130 MtrunA17_Chr4g0018391 46.875 160 72 4 58 216 9 156 2.15e-43 159
Msa0130130 MtrunA17_Chr4g0042561 46.061 165 77 4 58 220 11 165 2.60e-43 157
Msa0130130 MtrunA17_Chr2g0316971 47.647 170 67 6 58 220 25 179 3.54e-43 159
Msa0130130 MtrunA17_Chr4g0056541 44.444 171 82 4 58 227 9 167 4.81e-43 159
Msa0130130 MtrunA17_Chr8g0346001 45.000 160 86 2 58 216 17 175 8.08e-43 160
Msa0130130 MtrunA17_Chr3g0124761 47.561 164 72 6 58 219 9 160 8.91e-43 155
Msa0130130 MtrunA17_Chr4g0017921 46.250 160 72 3 58 216 10 156 1.04e-42 157
Msa0130130 MtrunA17_Chr2g0318081 46.061 165 77 3 58 222 18 170 1.04e-42 157
Msa0130130 MtrunA17_Chr2g0309331 43.333 180 83 5 58 235 12 174 5.52e-42 155
Msa0130130 MtrunA17_Chr7g0217711 51.020 147 69 2 45 191 8 151 1.06e-41 149
Msa0130130 MtrunA17_Chr5g0398971 46.584 161 73 5 58 216 9 158 1.19e-41 154
Msa0130130 MtrunA17_Chr7g0252971 38.208 212 107 6 58 255 10 211 1.61e-41 154
Msa0130130 MtrunA17_Chr8g0361731 40.000 185 104 4 58 238 16 197 2.55e-41 155
Msa0130130 MtrunA17_Chr5g0417791 46.541 159 77 4 58 216 5 155 2.86e-41 150
Msa0130130 MtrunA17_Chr8g0384721 44.767 172 81 6 49 218 1 160 4.44e-41 151
Msa0130130 MtrunA17_Chr8g0372121 38.235 204 111 6 58 258 8 199 4.70e-41 152
Msa0130130 MtrunA17_Chr2g0318101 45.181 166 84 4 58 219 17 179 5.98e-41 152
Msa0130130 MtrunA17_Chr5g0405211 44.375 160 76 3 58 216 10 157 6.12e-41 152
Msa0130130 MtrunA17_Chr6g0461661 49.080 163 67 6 59 217 21 171 1.56e-40 152
Msa0130130 MtrunA17_Chr7g0263931 44.910 167 76 6 58 219 13 168 4.09e-40 149
Msa0130130 MtrunA17_Chr1g0200561 43.452 168 82 4 58 224 21 176 4.54e-40 150
Msa0130130 MtrunA17_Chr7g0214071 43.386 189 87 6 58 243 17 188 1.11e-39 146
Msa0130130 MtrunA17_Chr2g0311651 44.444 171 87 4 58 222 24 192 1.20e-39 148
Msa0130130 MtrunA17_Chr5g0417001 43.114 167 83 5 58 219 16 175 3.14e-39 149
Msa0130130 MtrunA17_Chr4g0047841 43.820 178 81 4 58 219 17 191 3.60e-39 147
Msa0130130 MtrunA17_Chr7g0253011 47.590 166 69 6 58 217 19 172 3.87e-39 148
Msa0130130 MtrunA17_Chr8g0359921 43.636 165 83 3 58 222 16 170 9.59e-39 145
Msa0130130 MtrunA17_Chr2g0311661 43.860 171 88 4 58 222 23 191 1.28e-38 144
Msa0130130 MtrunA17_Chr3g0130731 45.122 164 76 6 58 219 9 160 2.27e-38 144
Msa0130130 MtrunA17_Chr2g0312321 46.584 161 71 5 58 217 13 159 2.31e-38 144
Msa0130130 MtrunA17_Chr6g0453131 39.665 179 102 4 58 234 17 191 2.75e-38 146
Msa0130130 MtrunA17_Chr2g0326361 40.722 194 90 7 58 246 16 189 4.07e-38 144
Msa0130130 MtrunA17_Chr1g0183741 45.342 161 70 4 58 216 12 156 7.97e-38 142
Msa0130130 MtrunA17_Chr7g0261411 45.283 159 69 4 58 214 12 154 3.54e-37 140
Msa0130130 MtrunA17_Chr8g0345671 55.556 126 53 2 59 182 14 138 3.83e-37 143
Msa0130130 MtrunA17_Chr5g0442771 41.667 168 92 3 58 222 20 184 5.07e-37 140
Msa0130130 MtrunA17_Chr3g0144271 50.388 129 60 2 58 184 25 151 6.39e-37 143
Msa0130130 MtrunA17_Chr8g0345691 46.203 158 68 4 59 214 15 157 1.39e-36 142
Msa0130130 MtrunA17_Chr4g0076731 38.889 162 84 4 58 218 56 203 2.40e-36 141
Msa0130130 MtrunA17_Chr4g0038751 41.212 165 77 4 58 219 17 164 1.14e-35 136
Msa0130130 MtrunA17_Chr8g0345711 41.975 162 85 5 59 214 15 173 1.01e-33 127
Msa0130130 MtrunA17_Chr8g0345731 45.736 129 64 3 59 182 27 154 5.92e-31 119
Msa0130130 MtrunA17_Chr2g0321741 42.029 138 62 3 76 213 12 131 1.95e-30 123
Msa0130130 MtrunA17_Chr3g0131911 39.080 174 88 6 58 224 16 178 7.79e-30 118
Msa0130130 MtrunA17_Chr8g0385991 38.235 170 92 5 58 224 16 175 9.19e-30 117
Msa0130130 MtrunA17_Chr3g0113001 38.202 178 101 3 105 280 11 181 1.57e-28 116
Msa0130130 MtrunA17_Chr4g0026141 38.323 167 90 4 58 219 7 165 3.49e-28 114
Msa0130130 MtrunA17_Chr8g0345721 39.355 155 62 3 59 182 38 191 3.79e-28 112
Msa0130130 MtrunA17_Chr8g0345701 44.286 140 59 4 59 182 10 146 5.24e-28 110
Msa0130130 MtrunA17_Chr1g0194791 63.291 79 28 1 27 105 18 95 2.07e-27 106
Msa0130130 MtrunA17_Chr8g0345741 44.068 118 63 2 67 182 2 118 3.25e-27 107
Msa0130130 MtrunA17_Chr3g0113031 39.752 161 89 4 122 280 3 157 1.95e-26 109
Msa0130130 MtrunA17_Chr2g0321631 34.940 166 98 5 58 219 6 165 4.47e-26 107
Msa0130130 MtrunA17_Chr7g0266701 36.310 168 91 7 58 217 6 165 5.00e-26 107
Msa0130130 MtrunA17_Chr4g0050701 35.542 166 81 7 58 216 13 159 1.57e-24 101
Msa0130130 MtrunA17_Chr7g0243371 50.685 73 34 1 114 184 19 91 3.05e-20 86.7
Msa0130130 MtrunA17_Chr8g0384351 31.765 170 78 7 58 224 12 146 2.75e-16 77.4
Msa0130130 MtrunA17_Chr3g0130321 29.814 161 101 5 58 215 9 160 7.66e-16 77.0
Msa0130130 MtrunA17_Chr7g0251651 31.496 127 78 5 59 182 21 141 2.57e-14 72.0
Msa0130130 MtrunA17_Chr7g0251661 28.571 126 83 4 59 182 13 133 8.85e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130130 AT3G10500.1 37.598 641 261 22 50 652 3 542 2.18e-96 307
Msa0130130 AT5G04410.1 63.768 207 65 2 50 256 3 199 2.58e-85 279
Msa0130130 AT5G04410.1 29.730 296 168 12 363 652 299 560 4.42e-18 88.6
Msa0130130 AT3G10480.1 58.201 189 69 3 57 245 28 206 3.55e-70 235
Msa0130130 AT3G10480.2 58.201 189 68 3 57 245 28 205 7.10e-70 234
Msa0130130 AT3G10490.1 57.672 189 70 3 57 245 28 206 1.65e-69 226
Msa0130130 AT3G10490.2 58.730 189 68 4 57 245 28 206 2.31e-68 230
Msa0130130 AT3G10480.3 49.550 222 69 4 57 245 28 239 1.71e-63 219
Msa0130130 AT5G09330.5 49.321 221 95 6 57 277 7 210 5.93e-62 214
Msa0130130 AT5G09330.2 49.321 221 95 6 57 277 7 210 5.93e-62 214
Msa0130130 AT5G09330.4 49.321 221 95 6 57 277 7 210 5.93e-62 214
Msa0130130 AT5G09330.3 49.321 221 95 6 57 277 7 210 5.93e-62 214
Msa0130130 AT5G09330.1 49.321 221 95 6 57 277 7 210 5.93e-62 214
Msa0130130 AT5G64060.1 51.075 186 81 2 57 242 7 182 1.32e-58 201
Msa0130130 AT1G34190.1 45.022 231 94 4 55 285 15 212 5.99e-58 205
Msa0130130 AT1G34180.3 44.643 224 112 3 55 276 15 228 1.24e-57 201
Msa0130130 AT1G34180.1 50.549 182 80 2 55 236 15 186 1.32e-56 201
Msa0130130 AT1G34180.4 42.373 236 112 4 55 276 15 240 2.50e-54 193
Msa0130130 AT1G34180.2 42.373 236 112 4 55 276 15 240 1.96e-53 193
Msa0130130 AT1G32870.2 54.286 175 70 3 58 232 12 176 1.66e-52 189
Msa0130130 AT1G32870.1 54.286 175 70 3 58 232 12 176 1.74e-52 189
Msa0130130 AT1G65910.1 53.801 171 67 3 58 227 8 167 2.43e-52 191
Msa0130130 AT1G32870.3 54.286 175 70 3 58 232 48 212 4.17e-52 189
Msa0130130 AT3G17730.1 52.795 161 66 2 58 218 8 158 3.32e-51 178
Msa0130130 AT5G46590.1 52.174 161 67 3 58 217 8 159 1.05e-50 178
Msa0130130 AT3G03200.1 53.459 159 65 2 58 216 8 157 1.85e-50 182
Msa0130130 AT5G17260.1 50.943 159 69 2 58 216 8 157 8.64e-49 178
Msa0130130 AT5G46590.2 54.610 141 62 2 58 197 8 147 2.17e-48 171
Msa0130130 AT4G17980.1 53.416 161 65 4 58 216 8 160 2.31e-47 168
Msa0130130 AT1G54330.1 51.205 166 68 2 58 223 8 160 2.35e-47 169
Msa0130130 AT4G17980.2 53.086 162 66 4 58 217 8 161 3.95e-47 168
Msa0130130 AT5G61430.1 49.102 167 71 4 58 222 18 172 2.90e-46 167
Msa0130130 AT1G71930.2 46.875 160 72 3 58 216 11 158 3.81e-45 164
Msa0130130 AT1G71930.1 46.875 160 72 3 58 216 11 158 3.81e-45 164
Msa0130130 AT1G33060.2 50.633 158 68 2 59 216 27 174 4.25e-45 171
Msa0130130 AT1G33060.1 50.633 158 68 2 59 216 27 174 4.30e-45 171
Msa0130130 AT2G46770.1 45.122 164 84 3 58 216 18 180 6.83e-45 164
Msa0130130 AT4G35580.1 51.266 158 67 2 59 216 12 159 8.46e-45 167
Msa0130130 AT3G18400.1 47.879 165 73 3 58 222 7 158 9.01e-45 162
Msa0130130 AT4G35580.3 51.266 158 67 2 59 216 12 159 1.04e-44 168
Msa0130130 AT4G35580.2 51.266 158 67 2 59 216 12 159 1.16e-44 167
Msa0130130 AT3G61910.1 44.848 165 85 3 58 217 13 176 1.28e-44 162
Msa0130130 AT5G07680.2 47.879 165 76 4 58 222 5 159 2.55e-44 161
Msa0130130 AT5G39610.1 47.879 165 76 3 58 222 22 176 2.69e-44 160
Msa0130130 AT5G07680.1 47.879 165 76 4 58 222 19 173 3.18e-44 161
Msa0130130 AT3G49530.2 47.170 159 73 3 59 216 16 164 1.07e-43 162
Msa0130130 AT1G69490.1 45.087 173 83 4 58 228 11 173 2.93e-43 157
Msa0130130 AT3G49530.1 47.170 159 73 3 59 216 16 164 3.70e-43 162
Msa0130130 AT3G15170.1 48.795 166 67 5 58 218 22 174 4.19e-43 158
Msa0130130 AT2G18060.3 42.778 180 89 4 58 235 11 178 5.19e-43 159
Msa0130130 AT2G18060.1 42.778 180 89 4 58 235 11 178 5.19e-43 159
Msa0130130 AT2G24430.2 46.707 167 74 4 58 222 18 171 7.05e-43 157
Msa0130130 AT2G24430.1 46.707 167 74 4 58 222 18 171 7.05e-43 157
Msa0130130 AT3G44290.2 47.436 156 64 3 58 213 16 153 8.17e-43 154
Msa0130130 AT1G32510.1 43.429 175 83 3 58 225 8 173 8.48e-43 156
Msa0130130 AT1G12260.2 47.500 160 71 4 58 216 9 156 1.13e-42 157
Msa0130130 AT4G10350.1 46.250 160 75 3 58 216 11 160 1.27e-42 157
Msa0130130 AT1G12260.1 47.500 160 71 4 58 216 9 156 1.45e-42 159
Msa0130130 AT1G01720.1 42.132 197 96 7 58 248 9 193 1.62e-42 155
Msa0130130 AT5G24590.2 49.068 161 67 4 59 216 16 164 1.72e-42 160
Msa0130130 AT5G53950.1 46.552 174 71 6 51 217 12 170 2.27e-42 157
Msa0130130 AT5G22290.1 44.970 169 74 5 45 213 12 161 4.62e-42 155
Msa0130130 AT2G27300.1 53.600 125 56 2 58 182 16 138 5.21e-42 155
Msa0130130 AT3G04070.2 47.273 165 77 5 58 217 12 171 6.88e-42 155
Msa0130130 AT3G44290.1 47.436 156 64 3 58 213 16 153 8.48e-42 155
Msa0130130 AT3G29035.1 46.067 178 76 5 58 230 26 188 8.80e-42 154
Msa0130130 AT5G18270.1 49.693 163 67 5 58 217 23 173 9.27e-42 155
Msa0130130 AT1G33280.1 45.625 160 73 3 58 216 10 156 1.19e-41 154
Msa0130130 AT1G62700.1 44.318 176 83 5 58 230 9 172 1.29e-41 156
Msa0130130 AT1G62700.2 44.318 176 83 5 58 230 9 172 1.29e-41 156
Msa0130130 AT5G18270.2 50.307 163 66 5 58 217 23 173 2.03e-41 154
Msa0130130 AT5G62380.2 46.914 162 69 5 58 216 9 156 3.46e-41 154
Msa0130130 AT5G62380.1 46.914 162 69 5 58 216 9 156 3.46e-41 154
Msa0130130 AT1G76420.1 45.122 164 73 5 58 218 24 173 3.79e-41 153
Msa0130130 AT1G26870.1 43.902 164 87 3 58 219 18 178 4.93e-41 155
Msa0130130 AT3G04060.1 48.447 161 72 4 58 217 22 172 6.00e-41 152
Msa0130130 AT4G36160.2 41.436 181 91 4 58 235 16 184 8.49e-41 153
Msa0130130 AT4G36160.1 41.436 181 91 4 58 235 12 180 8.52e-41 153
Msa0130130 AT4G36160.3 41.436 181 91 4 58 235 12 180 8.52e-41 153
Msa0130130 AT3G04070.1 31.940 335 186 11 58 363 12 333 2.18e-40 152
Msa0130130 AT1G61110.1 46.386 166 82 4 58 219 18 180 2.21e-40 150
Msa0130130 AT5G66300.1 43.103 174 87 4 58 230 14 176 2.81e-40 149
Msa0130130 AT5G08790.1 47.205 161 77 5 59 219 10 162 3.22e-40 149
Msa0130130 AT2G43000.1 43.210 162 81 3 58 219 20 170 4.36e-40 148
Msa0130130 AT1G79580.3 44.099 161 75 4 58 216 19 166 5.65e-40 150
Msa0130130 AT1G79580.5 44.099 161 75 4 58 216 19 166 5.65e-40 150
Msa0130130 AT1G79580.4 44.099 161 75 4 58 216 19 166 5.65e-40 150
Msa0130130 AT1G79580.2 44.099 161 75 4 58 216 19 166 5.65e-40 150
Msa0130130 AT1G79580.1 44.099 161 75 4 58 216 19 166 5.65e-40 150
Msa0130130 AT1G56010.2 40.306 196 109 2 58 253 21 208 7.79e-40 149
Msa0130130 AT3G15500.1 44.848 165 79 3 58 222 16 168 9.80e-40 149
Msa0130130 AT4G27410.2 45.000 160 76 3 58 217 16 163 1.02e-39 148
Msa0130130 AT1G52890.1 43.030 165 82 3 58 222 16 168 1.61e-39 148
Msa0130130 AT1G32770.1 42.169 166 83 4 58 216 18 177 2.41e-39 149
Msa0130130 AT3G12977.1 42.945 163 82 3 58 220 20 171 2.62e-39 146
Msa0130130 AT5G39820.1 42.373 177 83 5 58 219 22 194 3.73e-39 147
Msa0130130 AT5G63790.1 43.902 164 84 4 59 222 53 208 1.09e-38 145
Msa0130130 AT5G63790.2 43.902 164 84 4 59 222 63 218 1.25e-38 145
Msa0130130 AT1G77450.1 44.172 163 77 6 58 218 12 162 2.66e-38 142
Msa0130130 AT5G04395.1 46.497 157 66 4 58 200 30 182 4.94e-38 140
Msa0130130 AT2G17040.1 42.424 165 75 4 58 219 8 155 1.28e-37 141
Msa0130130 AT4G27410.3 40.571 175 79 3 58 217 16 180 1.62e-37 142
Msa0130130 AT3G15510.1 43.827 162 84 4 60 217 21 179 4.14e-37 142
Msa0130130 AT3G12910.1 43.023 172 88 5 58 222 23 191 1.38e-36 139
Msa0130130 AT2G02450.2 39.506 162 83 4 58 218 53 200 1.44e-36 142
Msa0130130 AT2G02450.1 39.506 162 83 4 58 218 53 200 1.53e-36 141
Msa0130130 AT2G33480.1 45.399 163 72 4 58 219 17 163 1.71e-36 138
Msa0130130 AT2G33480.2 45.062 162 72 4 58 219 17 161 2.18e-36 137
Msa0130130 AT5G13180.1 41.209 182 87 5 45 223 3 167 2.37e-36 137
Msa0130130 AT4G28530.1 40.678 177 71 5 58 216 12 172 3.74e-34 134
Msa0130130 AT1G52880.1 43.114 167 81 5 60 219 21 180 1.10e-31 126
Msa0130130 AT3G10490.4 58.095 105 35 3 132 236 2 97 4.31e-31 125
Msa0130130 AT3G10490.3 58.095 105 35 3 132 236 2 97 4.31e-31 125
Msa0130130 AT4G01520.1 42.308 130 71 2 59 184 7 136 2.04e-30 122
Msa0130130 AT5G61430.2 49.123 114 51 1 109 222 3 109 2.44e-30 120
Msa0130130 AT4G01540.3 43.846 130 69 2 59 184 7 136 3.49e-30 124
Msa0130130 AT4G01540.4 43.846 130 69 2 59 184 7 136 3.92e-30 123
Msa0130130 AT4G01540.2 43.846 130 69 2 59 184 7 136 4.71e-30 123
Msa0130130 AT4G01540.1 43.846 130 69 2 59 184 7 136 6.46e-30 124
Msa0130130 AT4G10350.2 46.602 103 46 1 114 216 20 113 7.81e-27 111
Msa0130130 AT3G12977.2 45.370 108 51 1 114 221 20 119 8.11e-27 109
Msa0130130 AT4G01550.1 35.593 177 95 3 59 230 7 169 2.26e-26 113
Msa0130130 AT1G56010.1 39.286 140 79 1 114 253 8 141 4.80e-26 108
Msa0130130 AT1G02230.1 41.406 128 68 3 59 182 6 130 6.43e-26 110
Msa0130130 AT3G04420.2 40.800 125 73 1 59 182 6 130 6.71e-26 108
Msa0130130 AT1G02250.1 32.927 246 127 9 59 289 6 228 8.85e-26 110
Msa0130130 AT5G22380.1 33.939 165 98 5 59 219 8 165 1.01e-25 106
Msa0130130 AT3G04420.1 40.800 125 73 1 59 182 6 130 2.10e-25 108
Msa0130130 AT3G44350.2 32.317 164 100 4 59 219 8 163 3.71e-25 105
Msa0130130 AT3G44350.1 34.351 131 83 3 59 186 8 138 9.93e-23 95.9
Msa0130130 AT2G33480.3 44.860 107 48 2 114 219 10 106 6.80e-22 94.7
Msa0130130 AT4G28530.2 45.370 108 40 3 58 149 12 116 4.99e-21 95.1
Msa0130130 AT1G02220.1 36.800 125 75 2 59 182 6 127 1.02e-20 95.5
Msa0130130 AT1G01010.1 32.317 164 86 4 59 213 6 153 3.09e-20 94.4
Msa0130130 AT5G64530.1 31.953 169 93 6 58 219 5 158 1.02e-19 87.8
Msa0130130 AT5G64530.2 36.641 131 66 5 58 186 5 120 7.04e-19 84.7
Msa0130130 AT2G43000.2 39.362 94 49 1 123 216 4 89 4.08e-18 83.6
Msa0130130 AT5G22290.2 46.053 76 26 2 138 213 2 62 1.01e-16 80.5
Msa0130130 AT2G18060.2 36.364 99 51 2 138 235 3 90 1.91e-16 80.5
Msa0130130 AT3G04430.1 32.331 133 77 4 62 183 6 136 1.22e-15 76.3
Msa0130130 AT3G10500.2 35.758 165 71 7 498 652 269 408 7.13e-14 74.7
Msa0130130 AT3G55210.1 28.161 174 99 5 53 214 8 167 1.73e-13 72.0
Msa0130130 AT3G56530.1 33.071 127 81 4 58 182 54 178 4.76e-13 71.2
Msa0130130 AT5G14000.2 31.387 137 85 4 59 192 18 148 7.72e-13 67.0

Find 197 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTTTGGTGCCTATTTC+TGG 0.060133 1_3:-60175970 Msa0130130:CDS
TTTGAAATTGATGAGAAATT+TGG 0.111696 1_3:+60178598 None:intergenic
AGGATCTAGCAGCGCCAAAT+TGG 0.239815 1_3:-60176399 Msa0130130:CDS
AGAATCCAAGCATATATATT+TGG 0.264088 1_3:+60176652 None:intergenic
AGCACTTCCAACTGTGTTAC+TGG 0.265170 1_3:+60177081 None:intergenic
TTGAAATTGATGAGAAATTT+GGG 0.274357 1_3:+60178599 None:intergenic
CCGTACTTCTCCCCATTCTT+AGG 0.288710 1_3:+60177783 None:intergenic
TGACTTTGTAGATTTCTTTA+CGG 0.291174 1_3:-60175753 Msa0130130:three_prime_UTR
GTCAAATCAGTAAGATAATC+AGG 0.296588 1_3:+60176800 None:intergenic
AATGAACCTTTGAAACTAGA+AGG 0.304326 1_3:-60177693 Msa0130130:CDS
GAGGAGGAATGGGAGAATTT+TGG 0.305278 1_3:-60177747 Msa0130130:CDS
GATCGGAAGCTTCATGTATA+CGG 0.313669 1_3:-60175857 Msa0130130:CDS
GAAGCAAGAGGGTAAATTTC+CGG 0.313971 1_3:+60178458 None:intergenic
CTTCAATCCAACTTCTGTTA+TGG 0.317313 1_3:-60177055 Msa0130130:CDS
TAAAATTGTGAGAAGATTCT+AGG 0.323338 1_3:+60178682 None:intergenic
CTACAGACCAAGCCAGAAAT+AGG 0.332472 1_3:+60175958 None:intergenic
ATCACGATTCTTAATATCAT+TGG 0.337803 1_3:+60176760 None:intergenic
CTGTAACCTGAGACCCAATT+TGG 0.341180 1_3:+60176385 None:intergenic
GATGAGATTTGTGTTTGTTT+TGG 0.344753 1_3:-60177859 Msa0130130:CDS
ATCTTCGAGAAGAGTGGTTC+GGG 0.351910 1_3:-60177807 Msa0130130:CDS
TGATGAGAAATTTGGGACTT+AGG 0.354472 1_3:+60178606 None:intergenic
TTTGGTGCCTATTTCTGGCT+TGG 0.358034 1_3:-60175965 Msa0130130:CDS
GAAGCTGAAGACAAGGGATT+TGG 0.364928 1_3:-60178274 Msa0130130:CDS
CTCCCTTTGTTGAGGAGGAA+TGG 0.367626 1_3:-60177758 Msa0130130:CDS
TGCAGTTATATGAGCTGAAT+TGG 0.369810 1_3:+60176113 None:intergenic
GGCTGTCCATAGCTGGGAAT+GGG 0.371810 1_3:+60176605 None:intergenic
TAGCAGAGTTAACATCAGTT+TGG 0.372184 1_3:+60175989 None:intergenic
ATTTATGTTATCACATGGTT+GGG 0.372906 1_3:-60175926 Msa0130130:CDS
ATTAGATAAGAAACATGTTT+GGG 0.373889 1_3:+60178645 None:intergenic
GTAAATGACAAATGCAAGTT+TGG 0.375294 1_3:-60175834 Msa0130130:exon
AGCAGAGTTAACATCAGTTT+GGG 0.377160 1_3:+60175990 None:intergenic
TTTAACACCGTTATGTCTAC+TGG 0.378066 1_3:-60176018 Msa0130130:CDS
TACGTTCATTAATAAATGCT+TGG 0.378930 1_3:+60177005 None:intergenic
AATAATATATCTGATCTATA+TGG 0.379133 1_3:-60176932 Msa0130130:CDS
TATAGATCAGATATATTATT+AGG 0.379942 1_3:+60176935 None:intergenic
TTCAAAGGTTCATTATCAAC+AGG 0.383389 1_3:+60177702 None:intergenic
CTGCTAAGGAGTTGGCTTGT+GGG 0.383688 1_3:-60176158 Msa0130130:CDS
TGATGTTAACTCTGCTACTT+TGG 0.392276 1_3:-60175983 Msa0130130:CDS
AATTAGATAAGAAACATGTT+TGG 0.399685 1_3:+60178644 None:intergenic
CTAAGAATGGGGAGAAGTAC+GGG 0.400942 1_3:-60177782 Msa0130130:CDS
AGAAGTATGGTAATAGTATC+AGG 0.407886 1_3:-60178224 Msa0130130:CDS
ACGTTCATTAATAAATGCTT+GGG 0.412592 1_3:+60177006 None:intergenic
ACAATGAATAATGTTAAGAT+TGG 0.412780 1_3:+60175717 None:intergenic
GATGAGAAATTTGGGACTTA+GGG 0.415472 1_3:+60178607 None:intergenic
ACCGCTTTCTACCAAGGTCC+TGG 0.419842 1_3:-60178540 Msa0130130:CDS
AATGATAGGCTGTCCATAGC+TGG 0.420213 1_3:+60176598 None:intergenic
CATTTATGTTATCACATGGT+TGG 0.423769 1_3:-60175927 Msa0130130:CDS
GTGGTTCGGGGCCTAAGAAT+GGG 0.426791 1_3:-60177794 Msa0130130:CDS
TATTAATGAACGTAAGCAAT+TGG 0.427450 1_3:-60176996 Msa0130130:CDS
CTTCATCTGTAGGGTGGAAT+CGG 0.427924 1_3:+60178514 None:intergenic
ACGAATCGTGCTACCGATAG+AGG 0.429431 1_3:-60178201 Msa0130130:CDS
GGCGCTGCTAGATCCTCCTT+TGG 0.437971 1_3:+60176406 None:intergenic
TAATACCTGCACTCCAGCTT+TGG 0.440305 1_3:+60178023 None:intergenic
CGCGAACCTGATCGAGGTCA+TGG 0.440556 1_3:+60177526 None:intergenic
TCCCTTTGTTGAGGAGGAAT+GGG 0.443540 1_3:-60177757 Msa0130130:CDS
AGTGGTTCGGGGCCTAAGAA+TGG 0.444141 1_3:-60177795 Msa0130130:CDS
ACTGCGTTGGACAAGAAGTA+TGG 0.444700 1_3:-60178237 Msa0130130:CDS
GTGCTACCGATAGAGGTTAC+TGG 0.447263 1_3:-60178194 Msa0130130:CDS
TGATGTACTGGTGGATCCCT+TGG 0.449135 1_3:-60177616 Msa0130130:CDS
CCTAAGAATGGGGAGAAGTA+CGG 0.449248 1_3:-60177783 Msa0130130:CDS
AAGTCCTCGTAAGTAGAATC+AGG 0.450580 1_3:+60177558 None:intergenic
TGATTTGACTGATGAGTACT+TGG 0.451759 1_3:-60176786 Msa0130130:CDS
TTCTGTACCTGATGATGTAC+TGG 0.454452 1_3:-60177628 Msa0130130:CDS
CCTGCTAAGGAGTTGGCTTG+TGG 0.455079 1_3:-60176159 Msa0130130:CDS
CTTTCACTCCTTGCATTCAA+AGG 0.455582 1_3:+60176629 None:intergenic
CGTTTCCAAATATATATGCT+TGG 0.455889 1_3:-60176657 Msa0130130:CDS
CACATGGTGATCGAAGCAAT+TGG 0.460401 1_3:-60178083 Msa0130130:CDS
CACTTGTTTATCACTTGGGT+CGG 0.461744 1_3:-60178110 Msa0130130:CDS
ATGGTACTTCTTCACTGCGT+TGG 0.462664 1_3:-60178250 Msa0130130:CDS
CGAACAATTTCTTCATCTGT+AGG 0.463070 1_3:+60178504 None:intergenic
GCAGCGCCAAATTGGGTCTC+AGG 0.465580 1_3:-60176391 Msa0130130:intron
GGATCTAGCAGCGCCAAATT+GGG 0.473993 1_3:-60176398 Msa0130130:CDS
TGCATCAGAGTTTCCTGCTA+AGG 0.474003 1_3:-60176172 Msa0130130:CDS
GTAAACCCTTCTAGTTTCAA+AGG 0.474396 1_3:+60177687 None:intergenic
AGGCATAGTAATCAAGCATT+CGG 0.476111 1_3:-60175524 Msa0130130:three_prime_UTR
TATGTTGGCCAACAACCTAT+TGG 0.476399 1_3:+60176212 None:intergenic
GATGCAAAATTGAAATTCAA+AGG 0.480037 1_3:+60176851 None:intergenic
GATCTTCGAGAAGAGTGGTT+CGG 0.480423 1_3:-60177808 Msa0130130:CDS
ACACTCTCCATAACAGAAGT+TGG 0.481256 1_3:+60177048 None:intergenic
ACCATAACCTGCTCAATGAT+AGG 0.481307 1_3:+60176584 None:intergenic
GATGCAAATGCAGGTGGAGC+AGG 0.481874 1_3:+60176189 None:intergenic
TTAGAGGCAATGCGATGGAT+TGG 0.483997 1_3:-60176062 Msa0130130:CDS
TGAAACCCATGACCTCGATC+AGG 0.485558 1_3:-60177532 Msa0130130:intron
TGGATTCTCCTTTGAATGCA+AGG 0.486310 1_3:-60176637 Msa0130130:CDS
AGGCTGTCCATAGCTGGGAA+TGG 0.491587 1_3:+60176604 None:intergenic
TCCCATTCCTCCTCAACAAA+GGG 0.491594 1_3:+60177756 None:intergenic
GAATTGGATGACTCAGCTGC+AGG 0.500175 1_3:+60176129 None:intergenic
CCACAAGCCAACTCCTTAGC+AGG 0.500568 1_3:+60176159 None:intergenic
ACATGGTGATCGAAGCAATT+GGG 0.507365 1_3:-60178082 Msa0130130:CDS
GATGAGACTTTAGCCAAAGC+TGG 0.508004 1_3:-60178036 Msa0130130:CDS
TTCACGAGTTCATCAACATC+AGG 0.509294 1_3:+60177663 None:intergenic
TTCATTATCAACAGGCGGCA+AGG 0.512774 1_3:+60177710 None:intergenic
AGAGTTTCCTGCTAAGGAGT+TGG 0.513288 1_3:-60176166 Msa0130130:CDS
GAAGACACTTGTTTATCACT+TGG 0.516829 1_3:-60178115 Msa0130130:CDS
ATTGGGTCATGCATGAGTAT+AGG 0.516923 1_3:-60178065 Msa0130130:CDS
ATGCTTGGGAATACTGAGGA+TGG 0.519813 1_3:+60177020 None:intergenic
AAGCAATTGGAAGCCACTCT+TGG 0.521943 1_3:-60176983 Msa0130130:CDS
AATTCAGCTCATATAACTGC+AGG 0.522347 1_3:-60176111 Msa0130130:CDS
TTTAGCCAAAGCTGGAGTGC+AGG 0.526882 1_3:-60178028 Msa0130130:intron
GATTGGATGGTGGACAAGAA+TGG 0.532762 1_3:-60176045 Msa0130130:CDS
CTATTCGTTATATACTATGT+TGG 0.533373 1_3:-60175566 Msa0130130:three_prime_UTR
ATCGGAAGCTTCATGTATAC+GGG 0.534310 1_3:-60175856 Msa0130130:CDS
GGATCCACCAGTACATCATC+AGG 0.534443 1_3:+60177621 None:intergenic
TTAACACCGTTATGTCTACT+GGG 0.535683 1_3:-60176017 Msa0130130:CDS
GTTTGTCAAGGAACTACCAT+AGG 0.538784 1_3:+60176468 None:intergenic
GAACAATTTCTTCATCTGTA+GGG 0.541473 1_3:+60178505 None:intergenic
GAAAGCCCCATTCCCAGCTA+TGG 0.541885 1_3:-60176611 Msa0130130:CDS
AAGACACTTGTTTATCACTT+GGG 0.542978 1_3:-60178114 Msa0130130:CDS
ACTTGTTTATCACTTGGGTC+GGG 0.543479 1_3:-60178109 Msa0130130:CDS
TCATTATCAACAGGCGGCAA+GGG 0.543494 1_3:+60177711 None:intergenic
CTCCCATTCCTCCTCAACAA+AGG 0.545530 1_3:+60177755 None:intergenic
CACTTGGGTCGGGCTCCACA+TGG 0.545932 1_3:-60178099 Msa0130130:CDS
CCGCTTTCTACCAAGGTCCT+GGG 0.551610 1_3:-60178539 Msa0130130:CDS
GTGAGAAGATTCTAGGACCT+CGG 0.552018 1_3:+60178689 None:intergenic
GACATACTGGGAAGGTCCCA+TGG 0.553857 1_3:+60178399 None:intergenic
ATGAACCTTTGAAACTAGAA+GGG 0.554073 1_3:-60177692 Msa0130130:CDS
CGATCTTGAAACTCAGTGAA+AGG 0.554572 1_3:+60175875 None:intergenic
CTTTCACTGAGTTTCAAGAT+CGG 0.555244 1_3:-60175874 Msa0130130:CDS
CGGGGCTCCCTTTGTTGAGG+AGG 0.555447 1_3:-60177763 Msa0130130:CDS
GAGAACGATGCTTAACTGAC+TGG 0.557153 1_3:+60175796 None:intergenic
TAAAGAAATCTACAAAGTCA+TGG 0.557593 1_3:+60175756 None:intergenic
GAAGCATGCCAATAGGTTGT+TGG 0.558530 1_3:-60176220 Msa0130130:CDS
TGGACAGCCTATCATTGAGC+AGG 0.558645 1_3:-60176591 Msa0130130:intron
TCATGAAGATTTACCAAAGG+AGG 0.560098 1_3:-60176419 Msa0130130:CDS
AGAGGTTACTGGAAGACTAC+TGG 0.560217 1_3:-60178183 Msa0130130:CDS
AATATCAATTCAGTGCAAGA+TGG 0.561413 1_3:-60176905 Msa0130130:CDS
AAGGATCGTGCTATCAAGAA+TGG 0.564256 1_3:-60178159 Msa0130130:CDS
AGTCTTCCAGTAACCTCTAT+CGG 0.564257 1_3:+60178188 None:intergenic
TCAAATCAGTAAGATAATCA+GGG 0.565317 1_3:+60176801 None:intergenic
AATATATCTGATCTATATGG+TGG 0.571230 1_3:-60176929 Msa0130130:CDS
AAGAATGGAGAGGAGACTGT+TGG 0.572368 1_3:-60178144 Msa0130130:CDS
TGTACCTGATGATGTACTGG+TGG 0.572636 1_3:-60177625 Msa0130130:CDS
TGCAGGTGGAGCAGGTATGT+TGG 0.572952 1_3:+60176197 None:intergenic
ACATCTACAAATTCGAGCCA+TGG 0.573608 1_3:-60178416 Msa0130130:CDS
CGTCGTCGTCAGGGCATGCA+AGG 0.575963 1_3:+60176684 None:intergenic
GGAAACTCTGATGCAAATGC+AGG 0.577041 1_3:+60176180 None:intergenic
TCTAGCATTGCAGCAACAGA+AGG 0.578501 1_3:+60176713 None:intergenic
AATGTGGAGGGCGAAACCTA+TGG 0.578503 1_3:-60176484 Msa0130130:CDS
TGGATGGTGGACAAGAATGG+AGG 0.578543 1_3:-60176042 Msa0130130:CDS
ATGATAGGCTGTCCATAGCT+GGG 0.578547 1_3:+60176599 None:intergenic
ATCTACTTGTTTCGTCCTCG+AGG 0.580131 1_3:-60175493 None:intergenic
GAGATATAATTTGATTCACC+AGG 0.580669 1_3:-60175544 Msa0130130:three_prime_UTR
CAATTTCTTCATCTGTAGGG+TGG 0.582331 1_3:+60178508 None:intergenic
GTACGGGGCTCCCTTTGTTG+AGG 0.584130 1_3:-60177766 Msa0130130:CDS
ATATATCTGATCTATATGGT+GGG 0.590562 1_3:-60176928 Msa0130130:CDS
AGATGTCGAAGCTGAAGACA+AGG 0.592347 1_3:-60178281 Msa0130130:CDS
GGAATCGGAACCCAGGACCT+TGG 0.593127 1_3:+60178529 None:intergenic
GCGAACCTGATCGAGGTCAT+GGG 0.593464 1_3:+60177527 None:intergenic
AGGATGCTTATGTCCTGTGT+AGG 0.594455 1_3:-60177830 Msa0130130:CDS
GAATGCTTGATTACTATGCC+TGG 0.596620 1_3:+60175526 None:intergenic
CATCTACAAATTCGAGCCAT+GGG 0.597761 1_3:-60178415 Msa0130130:CDS
ATTGATACCAGTAACACAGT+TGG 0.598796 1_3:-60177088 Msa0130130:CDS
TGGTTCGGGGCCTAAGAATG+GGG 0.603951 1_3:-60177793 Msa0130130:CDS
AACTCTGATGCAAATGCAGG+TGG 0.607180 1_3:+60176183 None:intergenic
ATCGTTCTCATTGAATGACT+AGG 0.608878 1_3:-60175782 Msa0130130:three_prime_UTR
TGAAGACAAGGGATTTGGAA+TGG 0.611227 1_3:-60178269 Msa0130130:CDS
TGCTTGGGAATACTGAGGAT+GGG 0.611896 1_3:+60177021 None:intergenic
AATTGGATGACTCAGCTGCA+GGG 0.612514 1_3:+60176130 None:intergenic
GAAGGAACCGCTTTCTACCA+AGG 0.613452 1_3:-60178546 Msa0130130:CDS
TGTAGGATCTTCGAGAAGAG+TGG 0.616842 1_3:-60177813 Msa0130130:CDS
AGGCAATGCGATGGATTGGA+TGG 0.617737 1_3:-60176058 Msa0130130:CDS
ACAGAAGGATCAATCTCAGT+GGG 0.618605 1_3:+60176728 None:intergenic
GTGCAAGATGGATACAATGG+TGG 0.619749 1_3:-60176893 Msa0130130:CDS
ATCAGGTACAGAAACTGCCA+AGG 0.622479 1_3:+60177638 None:intergenic
CCCAGGACCTTGGTAGAAAG+CGG 0.622774 1_3:+60178539 None:intergenic
GCTGTCCATAGCTGGGAATG+GGG 0.625492 1_3:+60176606 None:intergenic
TGCAAGATGGATACAATGGT+GGG 0.628172 1_3:-60176892 Msa0130130:CDS
TGATGAACTCGTGAATCCCT+TGG 0.630807 1_3:-60177655 Msa0130130:CDS
TTGTCATGAAGATTTACCAA+AGG 0.633220 1_3:-60176422 Msa0130130:CDS
AGCGAGATAATCGAAGCAAG+AGG 0.634728 1_3:+60178446 None:intergenic
GCGAGATAATCGAAGCAAGA+GGG 0.635232 1_3:+60178447 None:intergenic
GGAAAACCCAGTAGACATAA+CGG 0.635521 1_3:+60176011 None:intergenic
CAAATCAGTAAGATAATCAG+GGG 0.637474 1_3:+60176802 None:intergenic
GTCAGAACTTAAAACTATCG+AGG 0.640688 1_3:+60175596 None:intergenic
GTAGGGTGGAATCGGAACCC+AGG 0.641481 1_3:+60178522 None:intergenic
TCAGTGCAAGATGGATACAA+TGG 0.642636 1_3:-60176896 Msa0130130:CDS
AAAGGTTCATTATCAACAGG+CGG 0.643229 1_3:+60177705 None:intergenic
ACTGCATTTATGTTATCACA+TGG 0.644214 1_3:-60175931 Msa0130130:CDS
GGGTCATTGACAGAATGTGG+AGG 0.644623 1_3:-60176497 Msa0130130:intron
GGTCATTGACAGAATGTGGA+GGG 0.649146 1_3:-60176496 Msa0130130:intron
TCTTGGTATGTATGAACATG+AGG 0.652722 1_3:-60176966 Msa0130130:CDS
ATGTTCATACATACCAAGAG+TGG 0.653226 1_3:+60176970 None:intergenic
AAGAAGATGACATACTGGGA+AGG 0.657085 1_3:+60178391 None:intergenic
TAAGAATGGGGAGAAGTACG+GGG 0.658394 1_3:-60177781 Msa0130130:CDS
TTACTGGAAGACTACTGGCA+AGG 0.661834 1_3:-60178178 Msa0130130:CDS
GATGTCGAAGCTGAAGACAA+GGG 0.663983 1_3:-60178280 Msa0130130:CDS
CAATGCGATGGATTGGATGG+TGG 0.669977 1_3:-60176055 Msa0130130:CDS
ATAAATGCTTGGGAATACTG+AGG 0.674761 1_3:+60177016 None:intergenic
TCGTGCTATCAAGAATGGAG+AGG 0.674964 1_3:-60178154 Msa0130130:CDS
AACAGAAGGATCAATCTCAG+TGG 0.687881 1_3:+60176727 None:intergenic
ATGCAACGCGAACCTGATCG+AGG 0.688963 1_3:+60177520 None:intergenic
TCTTCTCGAAGATCCTACAC+AGG 0.693249 1_3:+60177817 None:intergenic
TCAGGTACAGAAACTGCCAA+GGG 0.701648 1_3:+60177639 None:intergenic
CAATTGCTTCGATCACCATG+TGG 0.709636 1_3:+60178084 None:intergenic
TGTGCCTGATTCTACTTACG+AGG 0.713357 1_3:-60177562 Msa0130130:CDS
TCTTCGAGAAGAGTGGTTCG+GGG 0.722974 1_3:-60177806 Msa0130130:CDS
AAATCAGTAAGATAATCAGG+GGG 0.738324 1_3:+60176803 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTTTATTTTTT+TGG - chr1_3:60178511-60178530 Msa0130130:CDS 0.0%
!! AAATTAGAATTAAATATGAT+GGG + chr1_3:60177056-60177075 None:intergenic 10.0%
!! AAAATTAGAATTAAATATGA+TGG + chr1_3:60177057-60177076 None:intergenic 10.0%
!! AAATAAAAAAATAAAAATGC+AGG + chr1_3:60178508-60178527 None:intergenic 10.0%
!!! TTTTTGTAATTTATTGAACT+GGG - chr1_3:60176246-60176265 Msa0130130:intron 15.0%
!!! TTTTGTGTAATTTATGAAAT+TGG - chr1_3:60176269-60176288 Msa0130130:intron 15.0%
!! TTTGTGTAATTTATGAAATT+GGG - chr1_3:60176270-60176289 Msa0130130:intron 15.0%
!!! GATTTATTTATTTTTTATCG+TGG - chr1_3:60176861-60176880 Msa0130130:CDS 15.0%
!! TATAGATCAGATATATTATT+AGG + chr1_3:60177257-60177276 None:intergenic 15.0%
!! AATAATATATCTGATCTATA+TGG - chr1_3:60177257-60177276 Msa0130130:intron 15.0%
!! TGATAAAAACAAAAATTAGA+AGG + chr1_3:60177921-60177940 None:intergenic 15.0%
!!! AATTTTTGTTTTTATCACTT+CGG - chr1_3:60177924-60177943 Msa0130130:intron 15.0%
!! ATTAGATAAGAAACATGTTT+GGG + chr1_3:60175547-60175566 None:intergenic 20.0%
!! AATTAGATAAGAAACATGTT+TGG + chr1_3:60175548-60175567 None:intergenic 20.0%
!! TTGAAATTGATGAGAAATTT+GGG + chr1_3:60175593-60175612 None:intergenic 20.0%
!!! TTTGAAATTGATGAGAAATT+TGG + chr1_3:60175594-60175613 None:intergenic 20.0%
!!! GTTTTTGTAATTTATTGAAC+TGG - chr1_3:60176245-60176264 Msa0130130:intron 20.0%
!!! TTTTTTAATCAAACTTTTGC+TGG - chr1_3:60176832-60176851 Msa0130130:CDS 20.0%
!!! TTTTTAATCAAACTTTTGCT+GGG - chr1_3:60176833-60176852 Msa0130130:CDS 20.0%
!! AAGTAGATAATATAACAAGT+AGG + chr1_3:60177022-60177041 None:intergenic 20.0%
!! TAGAAATATCTTCAATTACT+AGG - chr1_3:60177076-60177095 Msa0130130:CDS 20.0%
!! ACAATGAATAATGTTAAGAT+TGG + chr1_3:60178475-60178494 None:intergenic 20.0%
! TAAAATTGTGAGAAGATTCT+AGG + chr1_3:60175510-60175529 None:intergenic 25.0%
! TAAACAATCCAACATCATTA+AGG + chr1_3:60176695-60176714 None:intergenic 25.0%
!! TTTTAATCAAACTTTTGCTG+GGG - chr1_3:60176834-60176853 Msa0130130:CDS 25.0%
! ACGTTCATTAATAAATGCTT+GGG + chr1_3:60177186-60177205 None:intergenic 25.0%
! TACGTTCATTAATAAATGCT+TGG + chr1_3:60177187-60177206 None:intergenic 25.0%
! TATTAATGAACGTAAGCAAT+TGG - chr1_3:60177193-60177212 Msa0130130:intron 25.0%
! AATATATCTGATCTATATGG+TGG - chr1_3:60177260-60177279 Msa0130130:intron 25.0%
! ATATATCTGATCTATATGGT+GGG - chr1_3:60177261-60177280 Msa0130130:intron 25.0%
!! AATTCAAAGGATTTTCGTTA+TGG + chr1_3:60177328-60177347 None:intergenic 25.0%
! GATGCAAAATTGAAATTCAA+AGG + chr1_3:60177341-60177360 None:intergenic 25.0%
! TCAAATCAGTAAGATAATCA+GGG + chr1_3:60177391-60177410 None:intergenic 25.0%
! ATCACGATTCTTAATATCAT+TGG + chr1_3:60177432-60177451 None:intergenic 25.0%
! AGAATCCAAGCATATATATT+TGG + chr1_3:60177540-60177559 None:intergenic 25.0%
! AAAAACATGTTTGTTTGTCA+AGG + chr1_3:60177736-60177755 None:intergenic 25.0%
!!! ATTACAGACATTACTTTTAG+AGG - chr1_3:60178111-60178130 Msa0130130:CDS 25.0%
! ATTTATGTTATCACATGGTT+GGG - chr1_3:60178263-60178282 Msa0130130:CDS 25.0%
! TAAAGAAATCTACAAAGTCA+TGG + chr1_3:60178436-60178455 None:intergenic 25.0%
! TGACTTTGTAGATTTCTTTA+CGG - chr1_3:60178436-60178455 Msa0130130:CDS 25.0%
! CTATTCGTTATATACTATGT+TGG - chr1_3:60178623-60178642 Msa0130130:CDS 25.0%
! TCTGTTTTCTGTCAAATCAA+TGG - chr1_3:60175621-60175640 Msa0130130:three_prime_UTR 30.0%
! TTTTCTGTCAAATCAATGGA+AGG - chr1_3:60175625-60175644 Msa0130130:three_prime_UTR 30.0%
GAACAATTTCTTCATCTGTA+GGG + chr1_3:60175687-60175706 None:intergenic 30.0%
TACCTTAAGAAAAAACTCAC+CGG - chr1_3:60175712-60175731 Msa0130130:three_prime_UTR 30.0%
! AGAAGTATGGTAATAGTATC+AGG - chr1_3:60175965-60175984 Msa0130130:CDS 30.0%
AAGACACTTGTTTATCACTT+GGG - chr1_3:60176075-60176094 Msa0130130:CDS 30.0%
! GATGAGATTTGTGTTTGTTT+TGG - chr1_3:60176330-60176349 Msa0130130:intron 30.0%
TTCAAAGGTTCATTATCAAC+AGG + chr1_3:60176490-60176509 None:intergenic 30.0%
!! AATGAACCTTTGAAACTAGA+AGG - chr1_3:60176496-60176515 Msa0130130:intron 30.0%
!! ATGAACCTTTGAAACTAGAA+GGG - chr1_3:60176497-60176516 Msa0130130:intron 30.0%
! TATTTTGTAAACTTTGCCTG+TGG - chr1_3:60176743-60176762 Msa0130130:CDS 30.0%
! ATTTTGTAAACTTTGCCTGT+GGG - chr1_3:60176744-60176763 Msa0130130:CDS 30.0%
AATCAAGCAAAGCAACAAAA+TGG + chr1_3:60176814-60176833 None:intergenic 30.0%
TGTCTATCATTCAACAGAAA+AGG + chr1_3:60176933-60176952 None:intergenic 30.0%
AATATCAATTCAGTGCAAGA+TGG - chr1_3:60177284-60177303 Msa0130130:intron 30.0%
! GAATTTCAATTTTGCATCTG+AGG - chr1_3:60177343-60177362 Msa0130130:intron 30.0%
AAATCAGTAAGATAATCAGG+GGG + chr1_3:60177389-60177408 None:intergenic 30.0%
CAAATCAGTAAGATAATCAG+GGG + chr1_3:60177390-60177409 None:intergenic 30.0%
GTCAAATCAGTAAGATAATC+AGG + chr1_3:60177392-60177411 None:intergenic 30.0%
CGTTTCCAAATATATATGCT+TGG - chr1_3:60177532-60177551 Msa0130130:intron 30.0%
! ATAGCCGTCTTAAAATCTTT+TGG - chr1_3:60177670-60177689 Msa0130130:CDS 30.0%
! TAGCCGTCTTAAAATCTTTT+GGG - chr1_3:60177671-60177690 Msa0130130:CDS 30.0%
TTGTCATGAAGATTTACCAA+AGG - chr1_3:60177767-60177786 Msa0130130:CDS 30.0%
AATAACAGCTTGAGAAATCA+GGG + chr1_3:60177846-60177865 None:intergenic 30.0%
AAATAACAGCTTGAGAAATC+AGG + chr1_3:60177847-60177866 None:intergenic 30.0%
!! TTTTTGTGTGTGTGTTATTG+TGG - chr1_3:60177864-60177883 Msa0130130:intron 30.0%
ACTGCATTTATGTTATCACA+TGG - chr1_3:60178258-60178277 Msa0130130:CDS 30.0%
CATTTATGTTATCACATGGT+TGG - chr1_3:60178262-60178281 Msa0130130:CDS 30.0%
GTAAATGACAAATGCAAGTT+TGG - chr1_3:60178355-60178374 Msa0130130:intron 30.0%
!!! AGTTTTAAGTTCTGACTGAT+AGG - chr1_3:60178600-60178619 Msa0130130:CDS 30.0%
GAGATATAATTTGATTCACC+AGG - chr1_3:60178645-60178664 Msa0130130:CDS 30.0%
! GATGAGAAATTTGGGACTTA+GGG + chr1_3:60175585-60175604 None:intergenic 35.0%
! TGATGAGAAATTTGGGACTT+AGG + chr1_3:60175586-60175605 None:intergenic 35.0%
CGAACAATTTCTTCATCTGT+AGG + chr1_3:60175688-60175707 None:intergenic 35.0%
!!! TTCCGGTGAGTTTTTTCTTA+AGG + chr1_3:60175717-60175736 None:intergenic 35.0%
AGAGAAGAAGATGACATACT+GGG + chr1_3:60175805-60175824 None:intergenic 35.0%
TAGAGAAGAAGATGACATAC+TGG + chr1_3:60175806-60175825 None:intergenic 35.0%
GTATGTCATCTTCTTCTCTA+TGG - chr1_3:60175806-60175825 Msa0130130:three_prime_UTR 35.0%
TCTTCTTCTCTATGGTTTCA+TGG - chr1_3:60175814-60175833 Msa0130130:three_prime_UTR 35.0%
GAAGACACTTGTTTATCACT+TGG - chr1_3:60176074-60176093 Msa0130130:CDS 35.0%
!!! GAGATTTGTGTTTGTTTTGG+TGG - chr1_3:60176333-60176352 Msa0130130:intron 35.0%
AAAGGTTCATTATCAACAGG+CGG + chr1_3:60176487-60176506 None:intergenic 35.0%
!! GTAAACCCTTCTAGTTTCAA+AGG + chr1_3:60176505-60176524 None:intergenic 35.0%
!! TCGTCATAAAAAGCATCCAA+GGG + chr1_3:60176592-60176611 None:intergenic 35.0%
!! ATGCTTTTTATGACGAGCTT+TGG - chr1_3:60176596-60176615 Msa0130130:CDS 35.0%
TTCATTCATGTTTGTGCTGT+TGG - chr1_3:60176718-60176737 Msa0130130:CDS 35.0%
AATCTGTGCCAAAACATATC+TGG + chr1_3:60176895-60176914 None:intergenic 35.0%
ATTGATACCAGTAACACAGT+TGG - chr1_3:60177101-60177120 Msa0130130:intron 35.0%
CTTCAATCCAACTTCTGTTA+TGG - chr1_3:60177134-60177153 Msa0130130:intron 35.0%
ATAAATGCTTGGGAATACTG+AGG + chr1_3:60177176-60177195 None:intergenic 35.0%
ATGTTCATACATACCAAGAG+TGG + chr1_3:60177222-60177241 None:intergenic 35.0%
TCTTGGTATGTATGAACATG+AGG - chr1_3:60177223-60177242 Msa0130130:intron 35.0%
TGATTTGACTGATGAGTACT+TGG - chr1_3:60177403-60177422 Msa0130130:intron 35.0%
! AGCCGTCTTAAAATCTTTTG+GGG - chr1_3:60177672-60177691 Msa0130130:CDS 35.0%
!! GACCCCAAAAGATTTTAAGA+CGG + chr1_3:60177677-60177696 None:intergenic 35.0%
TCATGAAGATTTACCAAAGG+AGG - chr1_3:60177770-60177789 Msa0130130:CDS 35.0%
! AATCAGGGTTTAAAGTGAGT+GGG + chr1_3:60177831-60177850 None:intergenic 35.0%
! AAATCAGGGTTTAAAGTGAG+TGG + chr1_3:60177832-60177851 None:intergenic 35.0%
!!! TTTGTTTTTATCACTTCGGC+AGG - chr1_3:60177928-60177947 Msa0130130:intron 35.0%
TGCAGTTATATGAGCTGAAT+TGG + chr1_3:60178079-60178098 None:intergenic 35.0%
AATTCAGCTCATATAACTGC+AGG - chr1_3:60178078-60178097 Msa0130130:CDS 35.0%
TTTAACACCGTTATGTCTAC+TGG - chr1_3:60178171-60178190 Msa0130130:CDS 35.0%
TTAACACCGTTATGTCTACT+GGG - chr1_3:60178172-60178191 Msa0130130:CDS 35.0%
AGCAGAGTTAACATCAGTTT+GGG + chr1_3:60178202-60178221 None:intergenic 35.0%
TAGCAGAGTTAACATCAGTT+TGG + chr1_3:60178203-60178222 None:intergenic 35.0%
! TGATGTTAACTCTGCTACTT+TGG - chr1_3:60178206-60178225 Msa0130130:CDS 35.0%
CTTTCACTGAGTTTCAAGAT+CGG - chr1_3:60178315-60178334 Msa0130130:intron 35.0%
ATCGTTCTCATTGAATGACT+AGG - chr1_3:60178407-60178426 Msa0130130:CDS 35.0%
GTCAGAACTTAAAACTATCG+AGG + chr1_3:60178596-60178615 None:intergenic 35.0%
AGGCATAGTAATCAAGCATT+CGG - chr1_3:60178665-60178684 Msa0130130:CDS 35.0%
CAATTTCTTCATCTGTAGGG+TGG + chr1_3:60175684-60175703 None:intergenic 40.0%
GAAGCAAGAGGGTAAATTTC+CGG + chr1_3:60175734-60175753 None:intergenic 40.0%
ACATCTACAAATTCGAGCCA+TGG - chr1_3:60175773-60175792 Msa0130130:three_prime_UTR 40.0%
CATCTACAAATTCGAGCCAT+GGG - chr1_3:60175774-60175793 Msa0130130:three_prime_UTR 40.0%
AAGAAGATGACATACTGGGA+AGG + chr1_3:60175801-60175820 None:intergenic 40.0%
TGAAGACAAGGGATTTGGAA+TGG - chr1_3:60175920-60175939 Msa0130130:CDS 40.0%
AGTCTTCCAGTAACCTCTAT+CGG + chr1_3:60176004-60176023 None:intergenic 40.0%
AAGGATCGTGCTATCAAGAA+TGG - chr1_3:60176030-60176049 Msa0130130:CDS 40.0%
CACTTGTTTATCACTTGGGT+CGG - chr1_3:60176079-60176098 Msa0130130:CDS 40.0%
ACTTGTTTATCACTTGGGTC+GGG - chr1_3:60176080-60176099 Msa0130130:CDS 40.0%
ACATGGTGATCGAAGCAATT+GGG - chr1_3:60176107-60176126 Msa0130130:CDS 40.0%
ATTGGGTCATGCATGAGTAT+AGG - chr1_3:60176124-60176143 Msa0130130:CDS 40.0%
!!! TGTGTTTGTTTTGGTGGAGA+AGG - chr1_3:60176339-60176358 Msa0130130:intron 40.0%
TTCACGAGTTCATCAACATC+AGG + chr1_3:60176529-60176548 None:intergenic 40.0%
! TTCTGTACCTGATGATGTAC+TGG - chr1_3:60176561-60176580 Msa0130130:intron 40.0%
!! CTCGTCATAAAAAGCATCCA+AGG + chr1_3:60176593-60176612 None:intergenic 40.0%
AAGTCCTCGTAAGTAGAATC+AGG + chr1_3:60176634-60176653 None:intergenic 40.0%
CGTTGCATCCTTAATGATGT+TGG - chr1_3:60176684-60176703 Msa0130130:CDS 40.0%
AAGCATTCAATCTATCCCAC+AGG + chr1_3:60176762-60176781 None:intergenic 40.0%
! TAATCAAACTTTTGCTGGGG+TGG - chr1_3:60176837-60176856 Msa0130130:CDS 40.0%
! CCAAAACATATCTGGAACGA+TGG + chr1_3:60176887-60176906 None:intergenic 40.0%
! CCATCGTTCCAGATATGTTT+TGG - chr1_3:60176884-60176903 Msa0130130:CDS 40.0%
ACACTCTCCATAACAGAAGT+TGG + chr1_3:60177144-60177163 None:intergenic 40.0%
TCAGTGCAAGATGGATACAA+TGG - chr1_3:60177293-60177312 Msa0130130:intron 40.0%
TGCAAGATGGATACAATGGT+GGG - chr1_3:60177297-60177316 Msa0130130:intron 40.0%
! CAATTTTGCATCTGAGGAAC+TGG - chr1_3:60177349-60177368 Msa0130130:intron 40.0%
ACAGAAGGATCAATCTCAGT+GGG + chr1_3:60177464-60177483 None:intergenic 40.0%
AACAGAAGGATCAATCTCAG+TGG + chr1_3:60177465-60177484 None:intergenic 40.0%
TGGATTCTCCTTTGAATGCA+AGG - chr1_3:60177552-60177571 Msa0130130:CDS 40.0%
CTTTCACTCCTTGCATTCAA+AGG + chr1_3:60177563-60177582 None:intergenic 40.0%
ACCATAACCTGCTCAATGAT+AGG + chr1_3:60177608-60177627 None:intergenic 40.0%
GTTTGTCAAGGAACTACCAT+AGG + chr1_3:60177724-60177743 None:intergenic 40.0%
! CTTTTGTGAAGCATGCCAAT+AGG - chr1_3:60177962-60177981 Msa0130130:intron 40.0%
TATGTTGGCCAACAACCTAT+TGG + chr1_3:60177980-60177999 None:intergenic 40.0%
!! TACTTTTAGAGGCAATGCGA+TGG - chr1_3:60178122-60178141 Msa0130130:CDS 40.0%
GGAAAACCCAGTAGACATAA+CGG + chr1_3:60178181-60178200 None:intergenic 40.0%
! ACATGGTTGGGTTTTCTTGA+TGG - chr1_3:60178275-60178294 Msa0130130:CDS 40.0%
! CATGGTTGGGTTTTCTTGAT+GGG - chr1_3:60178276-60178295 Msa0130130:CDS 40.0%
CGATCTTGAAACTCAGTGAA+AGG + chr1_3:60178317-60178336 None:intergenic 40.0%
GATCGGAAGCTTCATGTATA+CGG - chr1_3:60178332-60178351 Msa0130130:intron 40.0%
ATCGGAAGCTTCATGTATAC+GGG - chr1_3:60178333-60178352 Msa0130130:intron 40.0%
GAATGCTTGATTACTATGCC+TGG + chr1_3:60178666-60178685 None:intergenic 40.0%
!! GTGAGAAGATTCTAGGACCT+CGG + chr1_3:60175503-60175522 None:intergenic 45.0%
CTTCATCTGTAGGGTGGAAT+CGG + chr1_3:60175678-60175697 None:intergenic 45.0%
GCGAGATAATCGAAGCAAGA+GGG + chr1_3:60175745-60175764 None:intergenic 45.0%
AGCGAGATAATCGAAGCAAG+AGG + chr1_3:60175746-60175765 None:intergenic 45.0%
AGATGTCGAAGCTGAAGACA+AGG - chr1_3:60175908-60175927 Msa0130130:CDS 45.0%
GATGTCGAAGCTGAAGACAA+GGG - chr1_3:60175909-60175928 Msa0130130:CDS 45.0%
GAAGCTGAAGACAAGGGATT+TGG - chr1_3:60175915-60175934 Msa0130130:CDS 45.0%
ATGGTACTTCTTCACTGCGT+TGG - chr1_3:60175939-60175958 Msa0130130:CDS 45.0%
ACTGCGTTGGACAAGAAGTA+TGG - chr1_3:60175952-60175971 Msa0130130:CDS 45.0%
AGAGGTTACTGGAAGACTAC+TGG - chr1_3:60176006-60176025 Msa0130130:CDS 45.0%
TTACTGGAAGACTACTGGCA+AGG - chr1_3:60176011-60176030 Msa0130130:CDS 45.0%
TCGTGCTATCAAGAATGGAG+AGG - chr1_3:60176035-60176054 Msa0130130:CDS 45.0%
AAGAATGGAGAGGAGACTGT+TGG - chr1_3:60176045-60176064 Msa0130130:CDS 45.0%
CAATTGCTTCGATCACCATG+TGG + chr1_3:60176108-60176127 None:intergenic 45.0%
CACATGGTGATCGAAGCAAT+TGG - chr1_3:60176106-60176125 Msa0130130:CDS 45.0%
GATGAGACTTTAGCCAAAGC+TGG - chr1_3:60176153-60176172 Msa0130130:CDS 45.0%
TAATACCTGCACTCCAGCTT+TGG + chr1_3:60176169-60176188 None:intergenic 45.0%
AGGATGCTTATGTCCTGTGT+AGG - chr1_3:60176359-60176378 Msa0130130:intron 45.0%
TCTTCTCGAAGATCCTACAC+AGG + chr1_3:60176375-60176394 None:intergenic 45.0%
TGTAGGATCTTCGAGAAGAG+TGG - chr1_3:60176376-60176395 Msa0130130:intron 45.0%
GATCTTCGAGAAGAGTGGTT+CGG - chr1_3:60176381-60176400 Msa0130130:intron 45.0%
ATCTTCGAGAAGAGTGGTTC+GGG - chr1_3:60176382-60176401 Msa0130130:intron 45.0%
CCTAAGAATGGGGAGAAGTA+CGG - chr1_3:60176406-60176425 Msa0130130:CDS 45.0%
! CTAAGAATGGGGAGAAGTAC+GGG - chr1_3:60176407-60176426 Msa0130130:CDS 45.0%
! TAAGAATGGGGAGAAGTACG+GGG - chr1_3:60176408-60176427 Msa0130130:CDS 45.0%
TCCCTTTGTTGAGGAGGAAT+GGG - chr1_3:60176432-60176451 Msa0130130:CDS 45.0%
TCCCATTCCTCCTCAACAAA+GGG + chr1_3:60176436-60176455 None:intergenic 45.0%
! GAGGAGGAATGGGAGAATTT+TGG - chr1_3:60176442-60176461 Msa0130130:CDS 45.0%
TCATTATCAACAGGCGGCAA+GGG + chr1_3:60176481-60176500 None:intergenic 45.0%
TTCATTATCAACAGGCGGCA+AGG + chr1_3:60176482-60176501 None:intergenic 45.0%
TGATGAACTCGTGAATCCCT+TGG - chr1_3:60176534-60176553 Msa0130130:intron 45.0%
TCAGGTACAGAAACTGCCAA+GGG + chr1_3:60176553-60176572 None:intergenic 45.0%
ATCAGGTACAGAAACTGCCA+AGG + chr1_3:60176554-60176573 None:intergenic 45.0%
! TGTACCTGATGATGTACTGG+TGG - chr1_3:60176564-60176583 Msa0130130:intron 45.0%
TGTGCCTGATTCTACTTACG+AGG - chr1_3:60176627-60176646 Msa0130130:CDS 45.0%
AGCACTTCCAACTGTGTTAC+TGG + chr1_3:60177111-60177130 None:intergenic 45.0%
TGCTTGGGAATACTGAGGAT+GGG + chr1_3:60177171-60177190 None:intergenic 45.0%
ATGCTTGGGAATACTGAGGA+TGG + chr1_3:60177172-60177191 None:intergenic 45.0%
AAGCAATTGGAAGCCACTCT+TGG - chr1_3:60177206-60177225 Msa0130130:intron 45.0%
GTGCAAGATGGATACAATGG+TGG - chr1_3:60177296-60177315 Msa0130130:intron 45.0%
TCTAGCATTGCAGCAACAGA+AGG + chr1_3:60177479-60177498 None:intergenic 45.0%
ATGATAGGCTGTCCATAGCT+GGG + chr1_3:60177593-60177612 None:intergenic 45.0%
AATGATAGGCTGTCCATAGC+TGG + chr1_3:60177594-60177613 None:intergenic 45.0%
GCCTATCATTGAGCAGGTTA+TGG - chr1_3:60177604-60177623 Msa0130130:CDS 45.0%
TTGGGGTCATTGACAGAATG+TGG - chr1_3:60177689-60177708 Msa0130130:CDS 45.0%
GGTCATTGACAGAATGTGGA+GGG - chr1_3:60177693-60177712 Msa0130130:CDS 45.0%
CTGTAACCTGAGACCCAATT+TGG + chr1_3:60177807-60177826 None:intergenic 45.0%
GAAGCATGCCAATAGGTTGT+TGG - chr1_3:60177969-60177988 Msa0130130:intron 45.0%
AACTCTGATGCAAATGCAGG+TGG + chr1_3:60178009-60178028 None:intergenic 45.0%
GGAAACTCTGATGCAAATGC+AGG + chr1_3:60178012-60178031 None:intergenic 45.0%
TGCATCAGAGTTTCCTGCTA+AGG - chr1_3:60178017-60178036 Msa0130130:intron 45.0%
AGAGTTTCCTGCTAAGGAGT+TGG - chr1_3:60178023-60178042 Msa0130130:intron 45.0%
AATTGGATGACTCAGCTGCA+GGG + chr1_3:60178062-60178081 None:intergenic 45.0%
TTAGAGGCAATGCGATGGAT+TGG - chr1_3:60178127-60178146 Msa0130130:CDS 45.0%
!! GATTGGATGGTGGACAAGAA+TGG - chr1_3:60178144-60178163 Msa0130130:CDS 45.0%
!! GCTACTTTGGTGCCTATTTC+TGG - chr1_3:60178219-60178238 Msa0130130:CDS 45.0%
!! TTTGGTGCCTATTTCTGGCT+TGG - chr1_3:60178224-60178243 Msa0130130:CDS 45.0%
CTACAGACCAAGCCAGAAAT+AGG + chr1_3:60178234-60178253 None:intergenic 45.0%
GAGAACGATGCTTAACTGAC+TGG + chr1_3:60178396-60178415 None:intergenic 45.0%
GAAGGAACCGCTTTCTACCA+AGG - chr1_3:60175643-60175662 Msa0130130:three_prime_UTR 50.0%
ACGAATCGTGCTACCGATAG+AGG - chr1_3:60175988-60176007 Msa0130130:CDS 50.0%
GTGCTACCGATAGAGGTTAC+TGG - chr1_3:60175995-60176014 Msa0130130:CDS 50.0%
TTTAGCCAAAGCTGGAGTGC+AGG - chr1_3:60176161-60176180 Msa0130130:CDS 50.0%
TCTTCGAGAAGAGTGGTTCG+GGG - chr1_3:60176383-60176402 Msa0130130:intron 50.0%
CCGTACTTCTCCCCATTCTT+AGG + chr1_3:60176409-60176428 None:intergenic 50.0%
CTCCCTTTGTTGAGGAGGAA+TGG - chr1_3:60176431-60176450 Msa0130130:CDS 50.0%
CTCCCATTCCTCCTCAACAA+AGG + chr1_3:60176437-60176456 None:intergenic 50.0%
GGATCCACCAGTACATCATC+AGG + chr1_3:60176571-60176590 None:intergenic 50.0%
! TGATGTACTGGTGGATCCCT+TGG - chr1_3:60176573-60176592 Msa0130130:intron 50.0%
TGAAACCCATGACCTCGATC+AGG - chr1_3:60176657-60176676 Msa0130130:CDS 50.0%
TGGACAGCCTATCATTGAGC+AGG - chr1_3:60177598-60177617 Msa0130130:CDS 50.0%
GGGTCATTGACAGAATGTGG+AGG - chr1_3:60177692-60177711 Msa0130130:CDS 50.0%
AATGTGGAGGGCGAAACCTA+TGG - chr1_3:60177705-60177724 Msa0130130:CDS 50.0%
AGGATCTAGCAGCGCCAAAT+TGG - chr1_3:60177790-60177809 Msa0130130:CDS 50.0%
GGATCTAGCAGCGCCAAATT+GGG - chr1_3:60177791-60177810 Msa0130130:CDS 50.0%
!! CTGCTAAGGAGTTGGCTTGT+GGG - chr1_3:60178031-60178050 Msa0130130:CDS 50.0%
GAATTGGATGACTCAGCTGC+AGG + chr1_3:60178063-60178082 None:intergenic 50.0%
!! AGGCAATGCGATGGATTGGA+TGG - chr1_3:60178131-60178150 Msa0130130:CDS 50.0%
!! CAATGCGATGGATTGGATGG+TGG - chr1_3:60178134-60178153 Msa0130130:CDS 50.0%
!! TGGATGGTGGACAAGAATGG+AGG - chr1_3:60178147-60178166 Msa0130130:CDS 50.0%
ACCGCTTTCTACCAAGGTCC+TGG - chr1_3:60175649-60175668 Msa0130130:three_prime_UTR 55.0%
CCCAGGACCTTGGTAGAAAG+CGG + chr1_3:60175653-60175672 None:intergenic 55.0%
CCGCTTTCTACCAAGGTCCT+GGG - chr1_3:60175650-60175669 Msa0130130:three_prime_UTR 55.0%
GACATACTGGGAAGGTCCCA+TGG + chr1_3:60175793-60175812 None:intergenic 55.0%
! AGTGGTTCGGGGCCTAAGAA+TGG - chr1_3:60176394-60176413 Msa0130130:CDS 55.0%
! GTGGTTCGGGGCCTAAGAAT+GGG - chr1_3:60176395-60176414 Msa0130130:CDS 55.0%
! TGGTTCGGGGCCTAAGAATG+GGG - chr1_3:60176396-60176415 Msa0130130:CDS 55.0%
GCGAACCTGATCGAGGTCAT+GGG + chr1_3:60176665-60176684 None:intergenic 55.0%
ATGCAACGCGAACCTGATCG+AGG + chr1_3:60176672-60176691 None:intergenic 55.0%
AAACGTCGTCGTCGTCGTCA+GGG + chr1_3:60177517-60177536 None:intergenic 55.0%
GAAAGCCCCATTCCCAGCTA+TGG - chr1_3:60177578-60177597 Msa0130130:CDS 55.0%
GCTGTCCATAGCTGGGAATG+GGG + chr1_3:60177586-60177605 None:intergenic 55.0%
GGCTGTCCATAGCTGGGAAT+GGG + chr1_3:60177587-60177606 None:intergenic 55.0%
AGGCTGTCCATAGCTGGGAA+TGG + chr1_3:60177588-60177607 None:intergenic 55.0%
TGCAGGTGGAGCAGGTATGT+TGG + chr1_3:60177995-60178014 None:intergenic 55.0%
GATGCAAATGCAGGTGGAGC+AGG + chr1_3:60178003-60178022 None:intergenic 55.0%
CCACAAGCCAACTCCTTAGC+AGG + chr1_3:60178033-60178052 None:intergenic 55.0%
!! CCTGCTAAGGAGTTGGCTTG+TGG - chr1_3:60178030-60178049 Msa0130130:CDS 55.0%
GGAATCGGAACCCAGGACCT+TGG + chr1_3:60175663-60175682 None:intergenic 60.0%
GTAGGGTGGAATCGGAACCC+AGG + chr1_3:60175670-60175689 None:intergenic 60.0%
GTACGGGGCTCCCTTTGTTG+AGG - chr1_3:60176423-60176442 Msa0130130:CDS 60.0%
CGCGAACCTGATCGAGGTCA+TGG + chr1_3:60176666-60176685 None:intergenic 60.0%
GAAACGTCGTCGTCGTCGTC+AGG + chr1_3:60177518-60177537 None:intergenic 60.0%
GGCGCTGCTAGATCCTCCTT+TGG + chr1_3:60177786-60177805 None:intergenic 60.0%
GCAGCGCCAAATTGGGTCTC+AGG - chr1_3:60177798-60177817 Msa0130130:CDS 60.0%
CACTTGGGTCGGGCTCCACA+TGG - chr1_3:60176090-60176109 Msa0130130:CDS 65.0%
CGGGGCTCCCTTTGTTGAGG+AGG - chr1_3:60176426-60176445 Msa0130130:CDS 65.0%
CGTCGTCGTCAGGGCATGCA+AGG + chr1_3:60177508-60177527 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 60175496 60178715 60175496 ID=Msa0130130;Name=Msa0130130
chr1_3 mRNA 60175496 60178715 60175496 ID=Msa0130130-mRNA-1;Parent=Msa0130130;Name=Msa0130130-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.8|0.66|1|1|1|6|353|660
chr1_3 exon 60175496 60176261 60175496 ID=Msa0130130-mRNA-1:exon:19765;Parent=Msa0130130-mRNA-1
chr1_3 exon 60176392 60176506 60176392 ID=Msa0130130-mRNA-1:exon:19764;Parent=Msa0130130-mRNA-1
chr1_3 exon 60176592 60177113 60176592 ID=Msa0130130-mRNA-1:exon:19763;Parent=Msa0130130-mRNA-1
chr1_3 exon 60177533 60177880 60177533 ID=Msa0130130-mRNA-1:exon:19762;Parent=Msa0130130-mRNA-1
chr1_3 exon 60178029 60178303 60178029 ID=Msa0130130-mRNA-1:exon:19761;Parent=Msa0130130-mRNA-1
chr1_3 exon 60178406 60178715 60178406 ID=Msa0130130-mRNA-1:exon:19760;Parent=Msa0130130-mRNA-1
chr1_3 CDS 60178406 60178715 60178406 ID=Msa0130130-mRNA-1:cds;Parent=Msa0130130-mRNA-1
chr1_3 CDS 60178029 60178303 60178029 ID=Msa0130130-mRNA-1:cds;Parent=Msa0130130-mRNA-1
chr1_3 CDS 60177533 60177880 60177533 ID=Msa0130130-mRNA-1:cds;Parent=Msa0130130-mRNA-1
chr1_3 CDS 60176592 60177113 60176592 ID=Msa0130130-mRNA-1:cds;Parent=Msa0130130-mRNA-1
chr1_3 CDS 60176392 60176506 60176392 ID=Msa0130130-mRNA-1:cds;Parent=Msa0130130-mRNA-1
chr1_3 CDS 60175849 60176261 60175849 ID=Msa0130130-mRNA-1:cds;Parent=Msa0130130-mRNA-1
chr1_3 three_prime_UTR 60175496 60175848 60175496 ID=Msa0130130-mRNA-1:three_prime_utr;Parent=Msa0130130-mRNA-1
Gene Sequence

>Msa0130130

ACTTCCGAGGTCCTAGAATCTTCTCACAATTTTATTCTTCAAAAAAATCCCAAACATGTTTCTTATCTAATTTCACAATTCACAAACCCTAAGTCCCAAATTTCTCATCAATTTCAAAAATTCTCTCTGTTTTCTGTCAAATCAATGGAAGGAACCGCTTTCTACCAAGGTCCTGGGTTCCGATTCCACCCTACAGATGAAGAAATTGTTCGTTACTACCTTAAGAAAAAACTCACCGGAAATTTACCCTCTTGCTTCGATTATCTCGCTGTCATCGACATCTACAAATTCGAGCCATGGGACCTTCCCAAGATGTCGAAGCTGAAGACAAGGGATTTGGAATGGTACTTCTTCACTGCGTTGGACAAGAAGTATGGTAATAGTATCAGGACGAATCGTGCTACCGATAGAGGTTACTGGAAGACTACTGGCAAGGATCGTGCTATCAAGAATGGAGAGGAGACTGTTGGAATGAAGAAGACACTTGTTTATCACTTGGGTCGGGCTCCACATGGTGATCGAAGCAATTGGGTCATGCATGAGTATAGGATGATTGATGAGACTTTAGCCAAAGCTGGAGTGCAGATGAGATTTGTGTTTGTTTTGGTGGAGAAGGATGCTTATGTCCTGTGTAGGATCTTCGAGAAGAGTGGTTCGGGGCCTAAGAATGGGGAGAAGTACGGGGCTCCCTTTGTTGAGGAGGAATGGGAGAATTTTGGTGAACAAGTGCTACCCTTGCCGCCTGTTGATAATGAACCTTTGAAACTAGAAGGGTTTACTCCTGATGTTGATGAACTCGTGAATCCCTTGGCAGTTTCTGTACCTGATGATGTACTGGTGGATCCCTTGGATGCTTTTTATGACGAGCTTTGGAAAGAAAATGTGCCTGATTCTACTTACGAGGACTTTTTTGAAACCCATGACCTCGATCAGGATATTGATACCAGTAACACAGTTGGAAGTGCTGAACTTCAATCCAACTTCTGTTATGGAGAGTGTAGTACCCATCCTCAGTATTCCCAAGCATTTATTAATGAACGTAAGCAATTGGAAGCCACTCTTGGTATGTATGAACATGAGGTTGATCAGCCTAATAATATATCTGATCTATATGGTGGGAATATCAATTCAGTGCAAGATGGATACAATGGTGGGACAAACCATAACGAAAATCCTTTGAATTTCAATTTTGCATCTGAGGAACTGGATCAATTCTTTGATCCCCCTGATTATCTTACTGATTTGACTGATGAGTACTTGGAAGCCAATGATATTAAGAATCGTGATGAGTTTGTTCCCACTGAGATTGATCCTTCTGTTGCTGCAATGCTAGATGAGTACCTTGCATGCCCTGACGACGACGACGACGTTTCCAAATATATATGCTTGGATTCTCCTTTGAATGCAAGGAGTGAAAGCCCCATTCCCAGCTATGGACAGCCTATCATTGAGCAGAATGTGGAGGGCGAAACCTATGGTAGTTCCTTGACAAACAAACATGTTTTTGAAGCACAATCTTGTCATGAAGATTTACCAAAGGAGGATCTAGCAGCGCCAAATTGGGTCTCAGGAGATGCAAACACTTTTGTGAAGCATGCCAATAGGTTGTTGGCCAACATACCTGCTCCACCTGCATTTGCATCAGAGTTTCCTGCTAAGGAGTTGGCTTGTGGGACACACCCTGCAGCTGAGTCATCCAATTCAGCTCATATAACTGCAGGTATGATCAGCATTACAGACATTACTTTTAGAGGCAATGCGATGGATTGGATGGTGGACAAGAATGGAGGTTTTAACACCGTTATGTCTACTGGGTTTTCCCAAACTGATGTTAACTCTGCTACTTTGGTGCCTATTTCTGGCTTGGTCTGTAGCAAAACTGCATTTATGTTATCACATGGTTGGGTTTTCTTGATGGGTTTCTCAGTTGTGATCCTTTCACTGAGTTTCAAGATCGGAAGCTTCATGTATACGGGTAAATGA
Protein sequence

>Msa0130130

TSEVLESSHNFILQKNPKHVSYLISQFTNPKSQISHQFQKFSLFSVKSMEGTAFYQGPGFRFHPTDEEIVRYYLKKKLTGNLPSCFDYLAVIDIYKFEPWDLPKMSKLKTRDLEWYFFTALDKKYGNSIRTNRATDRGYWKTTGKDRAIKNGEETVGMKKTLVYHLGRAPHGDRSNWVMHEYRMIDETLAKAGVQMRFVFVLVEKDAYVLCRIFEKSGSGPKNGEKYGAPFVEEEWENFGEQVLPLPPVDNEPLKLEGFTPDVDELVNPLAVSVPDDVLVDPLDAFYDELWKENVPDSTYEDFFETHDLDQDIDTSNTVGSAELQSNFCYGECSTHPQYSQAFINERKQLEATLGMYEHEVDQPNNISDLYGGNINSVQDGYNGGTNHNENPLNFNFASEELDQFFDPPDYLTDLTDEYLEANDIKNRDEFVPTEIDPSVAAMLDEYLACPDDDDDVSKYICLDSPLNARSESPIPSYGQPIIEQNVEGETYGSSLTNKHVFEAQSCHEDLPKEDLAAPNWVSGDANTFVKHANRLLANIPAPPAFASEFPAKELACGTHPAAESSNSAHITAGMISITDITFRGNAMDWMVDKNGGFNTVMSTGFSQTDVNSATLVPISGLVCSKTAFMLSHGWVFLMGFSVVILSLSFKIGSFMYTGK*