AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1438840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438840 MtrunA17_Chr4g0057301 96.429 588 13 2 1 588 1 580 0.0 1131
Msa1438840 MtrunA17_Chr8g0350381 41.743 218 121 3 372 588 323 535 1.01e-44 166
Msa1438840 MtrunA17_Chr8g0350381 34.028 288 137 15 1 266 36 292 1.97e-20 95.1
Msa1438840 MtrunA17_Chr4g0058781 31.138 167 101 5 432 586 206 370 3.31e-13 71.6
Msa1438840 MtrunA17_Chr1g0188921 31.746 189 88 5 429 587 288 465 2.04e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438840 AT4G11740.1 47.876 612 247 17 1 588 1 564 4.54e-137 410
Msa1438840 AT4G23040.1 45.805 596 244 17 1 588 1 525 3.47e-121 369
Msa1438840 AT4G11740.2 43.470 513 218 16 1 489 1 465 5.09e-89 284
Msa1438840 AT4G00752.1 53.846 117 47 1 472 588 359 468 1.05e-32 131
Msa1438840 AT4G00752.1 28.883 412 208 12 1 395 1 344 1.47e-28 119
Msa1438840 AT4G10790.1 31.953 169 86 5 438 587 321 479 3.90e-13 72.4

Find 173 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAAAGCTTCTTGCTTAT+TGG 0.125120 tig0028644:+18928 None:intergenic
AACAATAACCGTATCTAAAT+TGG 0.200110 tig0028644:+18604 None:intergenic
TGCGGAGGACTGCTGCTTTC+CGG 0.215239 tig0028644:+20157 None:intergenic
CCTGGAGCTTATGAGATCTT+AGG 0.219787 tig0028644:+19280 None:intergenic
GTAGGATCAATAAGAGAAAA+TGG 0.285471 tig0028644:+21328 None:intergenic
ATGATGAAACAAAGAGGATT+TGG 0.306844 tig0028644:+22773 None:intergenic
GGCGATAACCACTTCCTTCC+GGG 0.309185 tig0028644:+19936 None:intergenic
CGCCCACGACGGCTGCCATC+TGG 0.310057 tig0028644:+19309 None:intergenic
CCAATAGTTGAAGATGTTAC+TGG 0.310930 tig0028644:-21169 Msa1438840:CDS
CCAGTAACATCTTCAACTAT+TGG 0.316434 tig0028644:+21169 None:intergenic
TCTCTTATTGATCCTACAAT+TGG 0.317933 tig0028644:-21322 Msa1438840:CDS
TCTATGTCATTGCTGCTATC+TGG 0.323869 tig0028644:+21004 None:intergenic
GTGCAGGACGTGAGTGAATC+TGG 0.324522 tig0028644:-20821 Msa1438840:intron
TGCAGTTTCATTGTCCTTGA+AGG 0.329311 tig0028644:-20753 Msa1438840:intron
ATTGGATTTAAATTATTTGC+AGG 0.348056 tig0028644:+18622 None:intergenic
GGAATTTGCCTTACCTCTCT+TGG 0.348395 tig0028644:+21241 None:intergenic
ACATGAGTTCATGCAGAATA+GGG 0.354183 tig0028644:-19900 Msa1438840:CDS
ATGACACTCCCATGTATATC+TGG 0.359077 tig0028644:+21127 None:intergenic
AGTATACTTCTCCCAATTGT+AGG 0.369406 tig0028644:+21310 None:intergenic
CCCATGTATATCTGGACCTT+GGG 0.371893 tig0028644:+21135 None:intergenic
CATCTTCAACTATTGGAATA+TGG 0.374805 tig0028644:+21176 None:intergenic
ATTCGTGGATGCTTTGTTGT+AGG 0.381356 tig0028644:-18718 Msa1438840:three_prime_UTR
AGAATCTCAAAGAAAGTTGC+AGG 0.386414 tig0028644:-19585 Msa1438840:CDS
CACATGAGTTCATGCAGAAT+AGG 0.393615 tig0028644:-19901 Msa1438840:CDS
CGGCGATAACCACTTCCTTC+CGG 0.398155 tig0028644:+19935 None:intergenic
TGTTGTGCCTGCCAGTGTGC+TGG 0.398181 tig0028644:+20183 None:intergenic
TCACCCTCCTTCACCATCAT+TGG 0.401882 tig0028644:-19846 Msa1438840:CDS
TGGTACTGTGGTAGTAAATA+TGG 0.401964 tig0028644:-20352 Msa1438840:intron
AAAAGTGATTGCCTTGGGTT+AGG 0.405676 tig0028644:+20797 None:intergenic
TCAACTCCTTGTGTCTTAGA+TGG 0.413557 tig0028644:+20508 None:intergenic
ATATGGTCATTGTAGATTGC+AGG 0.414538 tig0028644:-20335 Msa1438840:CDS
CCAAAGGCACGCCTAGGATA+TGG 0.415543 tig0028644:+18992 None:intergenic
CTCTCGTCTGGATGCCTCAA+TGG 0.415695 tig0028644:+20961 None:intergenic
GTGTCAATCGTCTCTTGATT+AGG 0.417630 tig0028644:+22703 None:intergenic
CGTTCCCCAAGGAGATTTCA+TGG 0.423137 tig0028644:-21419 Msa1438840:CDS
TCATCATCAGAGGATGGTTC+TGG 0.423795 tig0028644:+19360 None:intergenic
TATATCCATGAAATCTCCTT+GGG 0.423971 tig0028644:+21414 None:intergenic
CTCTTATTGATCCTACAATT+GGG 0.431169 tig0028644:-21321 Msa1438840:CDS
TGGAGGCTCAGCGCTTGATA+AGG 0.432269 tig0028644:-19826 Msa1438840:CDS
AGACACAAGGAGTTGACTTA+GGG 0.445695 tig0028644:-20501 Msa1438840:CDS
TAGAGGAGATGCCTTTGGTT+AGG 0.447607 tig0028644:-20273 Msa1438840:CDS
AACTTAAAGGTGTACCTTCA+AGG 0.447852 tig0028644:+20739 None:intergenic
CTCACCAGTCTGTAACTGCT+TGG 0.449344 tig0028644:+19127 None:intergenic
AGATGCCTTTGGTTAGGAAC+AGG 0.451031 tig0028644:-20267 Msa1438840:CDS
CCTCTAAAAGTGATTGCCTT+GGG 0.451247 tig0028644:+20792 None:intergenic
CCATATCCTAGGCGTGCCTT+TGG 0.452267 tig0028644:-18992 Msa1438840:CDS
TGGTGGTAGAGAGACTTCTT+TGG 0.454142 tig0028644:+19380 None:intergenic
CGAAGGAGACAGAAATTTGA+TGG 0.458140 tig0028644:-21599 Msa1438840:CDS
GATGAGTGACAAACGGCGCC+TGG 0.460210 tig0028644:+21263 None:intergenic
TTGGATTTAAATTATTTGCA+GGG 0.460676 tig0028644:+18623 None:intergenic
GGAGGCTCAGCGCTTGATAA+GGG 0.466359 tig0028644:-19825 Msa1438840:CDS
AAGAAAGTTGCAGGAAGAGC+AGG 0.467946 tig0028644:-19576 Msa1438840:intron
GCAAATTCCGATAGAGGATA+AGG 0.469648 tig0028644:-21227 Msa1438840:CDS
GCGCTTGATAAGGGAACAAC+AGG 0.471422 tig0028644:-19816 Msa1438840:intron
CTATATCCATGAAATCTCCT+TGG 0.473947 tig0028644:+21413 None:intergenic
AAGACACAAGGAGTTGACTT+AGG 0.474030 tig0028644:-20502 Msa1438840:CDS
TCACTTAGCTCCACAGGGTC+AGG 0.475192 tig0028644:-20229 Msa1438840:CDS
CCCTCCTTCACCATCATTGG+AGG 0.475775 tig0028644:-19843 Msa1438840:CDS
TGCAATGTTCGGTGGAATCC+CGG 0.476007 tig0028644:-19954 Msa1438840:CDS
AGTATACTTGATACTCATCT+TGG 0.477017 tig0028644:-21295 Msa1438840:CDS
CTTCATAGATATTGGTAGAC+AGG 0.477272 tig0028644:-19155 Msa1438840:CDS
ATGCTTGAGGCTGCAATGTT+CGG 0.477862 tig0028644:-19965 Msa1438840:CDS
GATGCTGGAGCACCTACGGC+AGG 0.478392 tig0028644:-20532 Msa1438840:CDS
AGATGTAGAGGAGATGCCTT+TGG 0.483061 tig0028644:-20278 Msa1438840:CDS
ACTTATCATGGAAATATTCG+TGG 0.488746 tig0028644:-18733 Msa1438840:three_prime_UTR
GGTAAGGCAAATTCCGATAG+AGG 0.489342 tig0028644:-21233 Msa1438840:CDS
AATTGCACTGCAAAAGCTTC+AGG 0.492758 tig0028644:-22650 Msa1438840:intron
CTTCTAAACTCTACGGCGTA+CGG 0.493880 tig0028644:-22856 Msa1438840:five_prime_UTR
GGGTGATATGCAAGAGGTGC+GGG 0.494974 tig0028644:+19863 None:intergenic
CATGTGTCACTTAGCTCCAC+AGG 0.497077 tig0028644:-20235 Msa1438840:CDS
TTAGGGGAAGTATCTTCAAA+TGG 0.499966 tig0028644:-20484 Msa1438840:CDS
ACTGGCAGGCACAACAGTTC+CGG 0.502879 tig0028644:-20176 Msa1438840:CDS
CTACCATCCTTATCCTCTAT+CGG 0.505961 tig0028644:+21220 None:intergenic
TCCCATGTATATCTGGACCT+TGG 0.507661 tig0028644:+21134 None:intergenic
TTCTCCAATGTGGGAGCACT+AGG 0.508488 tig0028644:+21031 None:intergenic
TCCTCTAAAAGTGATTGCCT+TGG 0.509045 tig0028644:+20791 None:intergenic
GGTGAAGAATTAGTCGGAGC+AGG 0.510649 tig0028644:+21070 None:intergenic
TGAAGAAGATGAAGATGTAG+AGG 0.512456 tig0028644:-20290 Msa1438840:CDS
ATGCCAGATGGCAGCCGTCG+TGG 0.515721 tig0028644:-19312 Msa1438840:CDS
CAAGAGGTGCGGGCTGAGGA+TGG 0.523670 tig0028644:+19873 None:intergenic
CTAGGTCTCGCACTACTGTC+AGG 0.525591 tig0028644:+21049 None:intergenic
TAGGCGTGCCTTTGGTGTTG+AGG 0.525926 tig0028644:-18984 Msa1438840:CDS
GACACATTCATCAGCATCAC+CGG 0.531398 tig0028644:-22685 Msa1438840:CDS
GAAACTGCACGAGCAAGCTC+AGG 0.531446 tig0028644:+20767 None:intergenic
GCTTATGAGATCTTAGGAAT+CGG 0.531602 tig0028644:+19286 None:intergenic
ATTATTTGCAGGGGAAGAGA+TGG 0.532664 tig0028644:+18633 None:intergenic
TGCCAGATGGCAGCCGTCGT+GGG 0.532912 tig0028644:-19311 Msa1438840:CDS
CCTAAGATCTCATAAGCTCC+AGG 0.534553 tig0028644:-19280 Msa1438840:intron
AGCATCTTTGCCTGACCCTG+TGG 0.535288 tig0028644:+20219 None:intergenic
GGCATCCAGACGAGAGGCTG+AGG 0.536461 tig0028644:-20954 Msa1438840:CDS
AAGGACTATACTTCATCAGA+TGG 0.537129 tig0028644:+20118 None:intergenic
CGTGTACAAGAAGGTGATGC+TGG 0.537918 tig0028644:-20547 Msa1438840:CDS
CTTGCAAAAGATAAAAGAGA+TGG 0.538424 tig0028644:+21361 None:intergenic
TGAGGAAAGTGCTGTGACAT+TGG 0.539969 tig0028644:-18966 Msa1438840:CDS
GAGACAGAAATTTGATGGCC+AGG 0.541997 tig0028644:-21594 Msa1438840:intron
ATCGAGTCCAGCACACTGGC+AGG 0.544729 tig0028644:-20190 Msa1438840:CDS
AAGCGCTGAGCCTCCAATGA+TGG 0.546680 tig0028644:+19833 None:intergenic
GGTGGAATCCCGGAAGGAAG+TGG 0.546810 tig0028644:-19944 Msa1438840:CDS
CATGAAATCTCCTTGGGGAA+CGG 0.548281 tig0028644:+21420 None:intergenic
AATATCAAATCATGTTCAAG+TGG 0.556375 tig0028644:+22831 None:intergenic
GCTGTGACATTGGACGAACT+TGG 0.558529 tig0028644:-18956 Msa1438840:CDS
AGGTGATGCTGGAGCACCTA+CGG 0.559902 tig0028644:-20536 Msa1438840:CDS
CTATACTTCATCAGATGGGA+AGG 0.562623 tig0028644:+20123 None:intergenic
TCTCTTGGATGAGTGACAAA+CGG 0.564540 tig0028644:+21256 None:intergenic
TATCATTCTTCTAAACTCTA+CGG 0.567389 tig0028644:-22863 Msa1438840:five_prime_UTR
AGCAACCTCAGCTTCCGCAA+TGG 0.570576 tig0028644:+19634 None:intergenic
AGCTCTGCCGCCGTTCCCCA+AGG 0.572207 tig0028644:-21430 Msa1438840:CDS
TTTCAATATTTACAGTGGGG+TGG 0.572452 tig0028644:-20019 Msa1438840:intron
ATCTGGTAAATTCTCCAATG+TGG 0.573046 tig0028644:+21021 None:intergenic
GTTAATGCATATTTCAGCGA+AGG 0.573755 tig0028644:-21616 Msa1438840:CDS
GATTGCGATTTCGATTTCCA+TGG 0.575402 tig0028644:-22731 Msa1438840:exon
GCCCAAGGTCCAGATATACA+TGG 0.578375 tig0028644:-21136 Msa1438840:CDS
CAAACCAAGCAGTTACAGAC+TGG 0.578668 tig0028644:-19131 Msa1438840:intron
TATGCAAGAGGTGCGGGCTG+AGG 0.580181 tig0028644:+19869 None:intergenic
AGTCAATCAACTCCTCAAGC+TGG 0.583922 tig0028644:-21199 Msa1438840:CDS
CTCTTGATTAGGTGTCGCCA+TGG 0.585370 tig0028644:+22714 None:intergenic
GGGAAGTATCTTCAAATGGA+AGG 0.585921 tig0028644:-20480 Msa1438840:intron
TGCAGGACGTGAGTGAATCT+GGG 0.588133 tig0028644:-20820 Msa1438840:intron
GTGGGGTGGCATGTCTTCAG+TGG 0.588272 tig0028644:-20005 Msa1438840:CDS
CATGAGTTCATGCAGAATAG+GGG 0.589737 tig0028644:-19899 Msa1438840:CDS
TCACTCATCCAAGAGAGGTA+AGG 0.590566 tig0028644:-21249 Msa1438840:CDS
AATGATTCGTGCAGCCATTG+AGG 0.594407 tig0028644:-20975 Msa1438840:CDS
TCATCTTGGTGCAACAAACC+AGG 0.596500 tig0028644:-21281 Msa1438840:CDS
ACTGGAACTGTTCATGCCCA+AGG 0.596583 tig0028644:-21151 Msa1438840:CDS
TGCAATTGGTTGAGAAACAC+CGG 0.598757 tig0028644:+22666 None:intergenic
GAAGGCCATTGCGGAAGCTG+AGG 0.599946 tig0028644:-19639 Msa1438840:CDS
CACAGCACTGTCATCATCAG+AGG 0.600630 tig0028644:+19350 None:intergenic
GTCTTAGATGGCCCTGCCGT+AGG 0.601129 tig0028644:+20520 None:intergenic
TCTGGTAAATTCTCCAATGT+GGG 0.601343 tig0028644:+21022 None:intergenic
GCAAAAGATAAAAGAGATGG+AGG 0.602367 tig0028644:+21364 None:intergenic
TCAACACCAAAGGCACGCCT+AGG 0.602812 tig0028644:+18986 None:intergenic
ACTCATGTGGTGCATAAGCA+CGG 0.608070 tig0028644:+19915 None:intergenic
TGGATTTAAATTATTTGCAG+GGG 0.611208 tig0028644:+18624 None:intergenic
TGTCTGCTTCTAATGATGCA+AGG 0.612016 tig0028644:+19675 None:intergenic
AAAGCACGGCGTGTACAAGA+AGG 0.613259 tig0028644:-20556 Msa1438840:CDS
AGCTGAGGTTGCTCGCGAAG+AGG 0.613437 tig0028644:-19624 Msa1438840:CDS
GGTCATTGTAGATTGCAGGC+AGG 0.615122 tig0028644:-20331 Msa1438840:CDS
TGAGCCTCCAATGATGGTGA+AGG 0.617026 tig0028644:+19839 None:intergenic
CTTGAGGCTGCAATGTTCGG+TGG 0.621722 tig0028644:-19962 Msa1438840:CDS
GAAATCTCCTTGGGGAACGG+CGG 0.621741 tig0028644:+21423 None:intergenic
ATGCTGGAGCACCTACGGCA+GGG 0.622987 tig0028644:-20531 Msa1438840:CDS
ATTGGAATATGGCCAGCTTG+AGG 0.623410 tig0028644:+21187 None:intergenic
GTAGACCTGTTCCTAACCAA+AGG 0.623848 tig0028644:+20262 None:intergenic
GCCTCCAATGATGGTGAAGG+AGG 0.625027 tig0028644:+19842 None:intergenic
TTAGGAATCGGCGCCCACGA+CGG 0.625136 tig0028644:+19298 None:intergenic
GGCAGGTAAGACCATATCCT+AGG 0.626242 tig0028644:-19003 Msa1438840:intron
AGCACTTTCCTCAACACCAA+AGG 0.630829 tig0028644:+18976 None:intergenic
AGGGTGATATGCAAGAGGTG+CGG 0.631640 tig0028644:+19862 None:intergenic
AAAAGAATTGAAGGCCATTG+CGG 0.632012 tig0028644:-19648 Msa1438840:CDS
GTGAATCTGGGCCTAACCCA+AGG 0.632081 tig0028644:-20808 Msa1438840:CDS
CTGTCAGGTGAAGAATTAGT+CGG 0.632592 tig0028644:+21064 None:intergenic
AGGACTATACTTCATCAGAT+GGG 0.635714 tig0028644:+20119 None:intergenic
ATTAATCGAGTCCAGCACAC+TGG 0.635866 tig0028644:-20194 Msa1438840:CDS
ATATCAAATCATGTTCAAGT+GGG 0.636947 tig0028644:+22832 None:intergenic
CCCAAGGTCCAGATATACAT+GGG 0.639087 tig0028644:-21135 Msa1438840:CDS
ATGTTCGGTGGAATCCCGGA+AGG 0.645721 tig0028644:-19950 Msa1438840:CDS
GCACTGTCATCATCAGAGGA+TGG 0.645765 tig0028644:+19354 None:intergenic
TCATCAGAGGATGGTTCTGG+TGG 0.646164 tig0028644:+19363 None:intergenic
GGGAAGGAATTGTCATTATG+CGG 0.648088 tig0028644:+20139 None:intergenic
GAGACCTAGTGCTCCCACAT+TGG 0.648732 tig0028644:-21035 Msa1438840:CDS
CTATTCTGCATGAACTCATG+TGG 0.657273 tig0028644:+19902 None:intergenic
GACACAAGGAGTTGACTTAG+GGG 0.664345 tig0028644:-20500 Msa1438840:CDS
ATTCCGATAGAGGATAAGGA+TGG 0.664553 tig0028644:-21223 Msa1438840:CDS
AAGGAATTGTCATTATGCGG+AGG 0.670479 tig0028644:+20142 None:intergenic
CATTGAGGCATCCAGACGAG+AGG 0.670635 tig0028644:-20960 Msa1438840:CDS
TGACAGTGCTGTGAATCTGA+TGG 0.684961 tig0028644:-19340 Msa1438840:CDS
GTTTGTCACTCATCCAAGAG+AGG 0.689319 tig0028644:-21254 Msa1438840:CDS
ATGTGTCACTTAGCTCCACA+GGG 0.692890 tig0028644:-20234 Msa1438840:CDS
ATATCCATGAAATCTCCTTG+GGG 0.695995 tig0028644:+21415 None:intergenic
GCAGGGCCATCTAAGACACA+AGG 0.699427 tig0028644:-20514 Msa1438840:CDS
CCTCCAATGATGGTGAAGGA+GGG 0.700161 tig0028644:+19843 None:intergenic
GAAGGAGGGTGATATGCAAG+AGG 0.710406 tig0028644:+19857 None:intergenic
TGATGAAGCAGTAATGCTTG+AGG 0.722177 tig0028644:-19978 Msa1438840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTTATTAAAATGTCT+TGG - tig0028644:19155-19174 Msa1438840:CDS 10.0%
!! AATAAGATAATTTAAAAACA+AGG + tig0028644:19365-19384 None:intergenic 10.0%
!!! TGACTTTATTTTTTTTATAT+TGG - tig0028644:20884-20903 Msa1438840:intron 10.0%
!!! TTTTTTTTATATTGGAAATT+TGG - tig0028644:20892-20911 Msa1438840:intron 10.0%
!!! TTTGTAAACATTTTTTTTCA+TGG - tig0028644:19851-19870 Msa1438840:CDS 15.0%
!!! ATTGTTTTTTTTGATATTGA+TGG - tig0028644:20052-20071 Msa1438840:intron 15.0%
!!! TATTTCTTAATTGTTTTTTC+CGG - tig0028644:20631-20650 Msa1438840:intron 15.0%
!! AATACAACATATAAAATTAG+AGG + tig0028644:20660-20679 None:intergenic 15.0%
!! AAAAAATAAAGTCAAAGTTA+CGG + tig0028644:20878-20897 None:intergenic 15.0%
!!! TAATTTTCAATATTTACAGT+GGG - tig0028644:21497-21516 Msa1438840:intron 15.0%
!!! AATTTTAAGATAAGAATGAT+AGG + tig0028644:22435-22454 None:intergenic 15.0%
!!! TGATTTGATATTTTTCAGTT+CGG - tig0028644:18700-18719 Msa1438840:three_prime_UTR 20.0%
!!! ACAAATTGTTATTACTCTTT+AGG - tig0028644:18921-18940 Msa1438840:CDS 20.0%
!! TTATGGTTTATCTAATCAAT+AGG - tig0028644:18984-19003 Msa1438840:CDS 20.0%
!! TATGGTTTATCTAATCAATA+GGG - tig0028644:18985-19004 Msa1438840:CDS 20.0%
!! AACAAAGCAATATTAAATCT+AGG + tig0028644:19321-19340 None:intergenic 20.0%
!! TCAACAATATAAGAAACTAA+TGG + tig0028644:19638-19657 None:intergenic 20.0%
!! TATGAGAAAGTAAACAATAT+CGG + tig0028644:19767-19786 None:intergenic 20.0%
!! ATAGAATAAGTTCTCTTTAA+TGG - tig0028644:19797-19816 Msa1438840:intron 20.0%
!! CAAAAAAAACAATGATGAAT+GGG + tig0028644:20045-20064 None:intergenic 20.0%
!! TCAAAAAAAACAATGATGAA+TGG + tig0028644:20046-20065 None:intergenic 20.0%
!! GGAAAAAACAATTAAGAAAT+AGG + tig0028644:20632-20651 None:intergenic 20.0%
!!! ATTTCTTAATTGTTTTTTCC+GGG - tig0028644:20632-20651 Msa1438840:intron 20.0%
!! CACTGTAAATATTGAAAATT+AGG + tig0028644:21498-21517 None:intergenic 20.0%
!!! CTAATTTTCAATATTTACAG+TGG - tig0028644:21496-21515 Msa1438840:intron 20.0%
!!! AATTTTCAATATTTACAGTG+GGG - tig0028644:21498-21517 Msa1438840:intron 20.0%
!!! CATCATTTTTCTGAATAATT+AGG + tig0028644:22463-22482 None:intergenic 20.0%
!!! TTTTTTTGTTTTGTTTCTGT+TGG - tig0028644:22484-22503 Msa1438840:intron 20.0%
!! TTGGATTTAAATTATTTGCA+GGG + tig0028644:22900-22919 None:intergenic 20.0%
!! ATTGGATTTAAATTATTTGC+AGG + tig0028644:22901-22920 None:intergenic 20.0%
! TATCATTCTTCTAAACTCTA+CGG - tig0028644:18657-18676 Msa1438840:three_prime_UTR 25.0%
! ATATCAAATCATGTTCAAGT+GGG + tig0028644:18691-18710 None:intergenic 25.0%
! AATATCAAATCATGTTCAAG+TGG + tig0028644:18692-18711 None:intergenic 25.0%
! TGTAATCAGAAAAGTGAATA+AGG + tig0028644:18904-18923 None:intergenic 25.0%
!! AGCGATTGAATTTTCAATTA+TGG - tig0028644:18967-18986 Msa1438840:CDS 25.0%
!! GAAAATTGTATTTTTCTCTC+TGG - tig0028644:19045-19064 Msa1438840:intron 25.0%
!! TATTTGTTGAATGATCAATG+AGG - tig0028644:19073-19092 Msa1438840:intron 25.0%
! TATAATCAGTTCTATGATGT+TGG - tig0028644:19207-19226 Msa1438840:intron 25.0%
!!! TTATTGCTGATTTCTGAATT+TGG - tig0028644:19339-19358 Msa1438840:CDS 25.0%
! AAACAAGAAGAAAACTGTAA+TGG + tig0028644:19391-19410 None:intergenic 25.0%
! AAAAATAAGCTAATCCAAAC+AGG + tig0028644:19474-19493 None:intergenic 25.0%
! AAAAATGTTTACAAATGCAG+AGG + tig0028644:19846-19865 None:intergenic 25.0%
!!! TAAACATTTTTTTTCATGGC+AGG - tig0028644:19855-19874 Msa1438840:CDS 25.0%
!!! TTTTTTTTGATATTGATGGC+CGG - tig0028644:20056-20075 Msa1438840:intron 25.0%
!!! ATTAATTTGTATTTCCCACA+TGG - tig0028644:20677-20696 Msa1438840:intron 25.0%
! AATAAGAGAACACAACTTAA+AGG + tig0028644:20797-20816 None:intergenic 25.0%
! TTTGACTGTTATATATGACA+TGG - tig0028644:21148-21167 Msa1438840:CDS 25.0%
! TCTGAAAATTCATAAAGTGA+AGG + tig0028644:21424-21443 None:intergenic 25.0%
!! CACTTTATGAATTTTCAGAA+CGG - tig0028644:21425-21444 Msa1438840:CDS 25.0%
!! ACTTTATGAATTTTCAGAAC+GGG - tig0028644:21426-21445 Msa1438840:CDS 25.0%
! TAGGTTAAAGTTTCTTACAT+AGG - tig0028644:21745-21764 Msa1438840:intron 25.0%
! TAAATCTGTAACTAATTGCA+TGG - tig0028644:21973-21992 Msa1438840:intron 25.0%
! TTCATTGCAATTAGTTATAC+TGG - tig0028644:22000-22019 Msa1438840:intron 25.0%
! TAGAAATCAAATTCCCATTT+CGG - tig0028644:22061-22080 Msa1438840:intron 25.0%
!! AAAAGAGACTGAAAATTTTC+AGG + tig0028644:22342-22361 None:intergenic 25.0%
! TGGATTTAAATTATTTGCAG+GGG + tig0028644:22899-22918 None:intergenic 25.0%
!!! GTAGTTTCTGTTGTTTTTGA+GGG + tig0028644:18637-18656 None:intergenic 30.0%
!!! AGTAGTTTCTGTTGTTTTTG+AGG + tig0028644:18638-18657 None:intergenic 30.0%
!!! GAGGATTTGGTTTTGTTTTT+GGG + tig0028644:18737-18756 None:intergenic 30.0%
!!! AGAGGATTTGGTTTTGTTTT+TGG + tig0028644:18738-18757 None:intergenic 30.0%
ATGATGAAACAAAGAGGATT+TGG + tig0028644:18750-18769 None:intergenic 30.0%
!!! GTTTTGATGATGAAACAAAG+AGG + tig0028644:18756-18775 None:intergenic 30.0%
CAGAAAAGTGAATAAGGAAA+AGG + tig0028644:18898-18917 None:intergenic 30.0%
ACTTATGCAAGTAGTTATCT+CGG - tig0028644:19437-19456 Msa1438840:intron 30.0%
TAGTTATCTCGGATGATTTA+GGG - tig0028644:19448-19467 Msa1438840:intron 30.0%
TATTATTCATAAGCTTGTCG+AGG - tig0028644:19537-19556 Msa1438840:intron 30.0%
TAAGAAACTAATGGCATGTT+TGG + tig0028644:19629-19648 None:intergenic 30.0%
TAAGTTCTCTTTAATGGTGT+TGG - tig0028644:19803-19822 Msa1438840:intron 30.0%
TGCTTCTAATGCATGAAAAA+AGG + tig0028644:19956-19975 None:intergenic 30.0%
TATATCCATGAAATCTCCTT+GGG + tig0028644:20109-20128 None:intergenic 30.0%
CTTGCAAAAGATAAAAGAGA+TGG + tig0028644:20162-20181 None:intergenic 30.0%
GTAGGATCAATAAGAGAAAA+TGG + tig0028644:20195-20214 None:intergenic 30.0%
TCTCTTATTGATCCTACAAT+TGG - tig0028644:20198-20217 Msa1438840:CDS 30.0%
CTCTTATTGATCCTACAATT+GGG - tig0028644:20199-20218 Msa1438840:CDS 30.0%
AGTATACTTGATACTCATCT+TGG - tig0028644:20225-20244 Msa1438840:CDS 30.0%
CATCTTCAACTATTGGAATA+TGG + tig0028644:20347-20366 None:intergenic 30.0%
TTATATATGACATGGTACTG+TGG - tig0028644:21156-21175 Msa1438840:CDS 30.0%
!! GTGTCACTTATTTCTTACAT+AGG - tig0028644:21726-21745 Msa1438840:intron 30.0%
CTTACATAGGTTAAAGTTAC+AGG - tig0028644:21758-21777 Msa1438840:intron 30.0%
TGTCTATGTTTATTTGATGC+AGG - tig0028644:21812-21831 Msa1438840:intron 30.0%
AGACAGAGAAAAAGAATTGA+AGG - tig0028644:21863-21882 Msa1438840:intron 30.0%
ATCAAACTCATACTTTCCTA+TGG - tig0028644:22037-22056 Msa1438840:intron 30.0%
! GGAATTTGATTTCTATCCAT+AGG + tig0028644:22056-22075 None:intergenic 30.0%
! TTGCATTTTCATAAACTGTC+AGG - tig0028644:22096-22115 Msa1438840:intron 30.0%
TTTCATAAACTGTCAGGAAT+TGG - tig0028644:22102-22121 Msa1438840:intron 30.0%
! CTAGCAGCATATTTTATAAC+AGG + tig0028644:22274-22293 None:intergenic 30.0%
! TAGTGTTTTCCTCCTTTATT+TGG - tig0028644:22291-22310 Msa1438840:intron 30.0%
! CTTTTCGACTTCATAGATAT+TGG - tig0028644:22357-22376 Msa1438840:intron 30.0%
!! TTGTTTCTGTTGGTTATTGT+TGG - tig0028644:22494-22513 Msa1438840:intron 30.0%
! TGTTTCTGTTGGTTATTGTT+GGG - tig0028644:22495-22514 Msa1438840:intron 30.0%
AAACAAAGCTTCTTGCTTAT+TGG + tig0028644:22595-22614 None:intergenic 30.0%
!!! TAAGCAAGAAGCTTTGTTTT+TGG - tig0028644:22596-22615 Msa1438840:intron 30.0%
!!! CTTCTAGCTTTTTTTCACAA+GGG + tig0028644:22634-22653 None:intergenic 30.0%
!!! TCTTCTAGCTTTTTTTCACA+AGG + tig0028644:22635-22654 None:intergenic 30.0%
!! AAGAACGTTGCATTTTAATC+TGG - tig0028644:22706-22725 Msa1438840:CDS 30.0%
ACTTATCATGGAAATATTCG+TGG - tig0028644:22787-22806 Msa1438840:five_prime_UTR 30.0%
! TATGATCCTTGCTGTCAATT+TGG - tig0028644:19259-19278 Msa1438840:intron 35.0%
! ATGATCCTTGCTGTCAATTT+GGG - tig0028644:19260-19279 Msa1438840:intron 35.0%
!! TCTTGTTGACTTAAAGCTAG+AGG - tig0028644:19284-19303 Msa1438840:CDS 35.0%
GTAGTTATCTCGGATGATTT+AGG - tig0028644:19447-19466 Msa1438840:intron 35.0%
AACTAATGGCATGTTTGGAT+TGG + tig0028644:19624-19643 None:intergenic 35.0%
TTAGCGTTAGATCTTACTCT+TGG - tig0028644:19673-19692 Msa1438840:CDS 35.0%
TAGAAGCAAACTAGCATAAG+AGG + tig0028644:19733-19752 None:intergenic 35.0%
GTTAATGCATATTTCAGCGA+AGG - tig0028644:19904-19923 Msa1438840:CDS 35.0%
AGAAATGTACCTTGTCACTA+TGG - tig0028644:19987-20006 Msa1438840:CDS 35.0%
AATGTAACACCATAGTGACA+AGG + tig0028644:19999-20018 None:intergenic 35.0%
ATATCCATGAAATCTCCTTG+GGG + tig0028644:20108-20127 None:intergenic 35.0%
CTATATCCATGAAATCTCCT+TGG + tig0028644:20110-20129 None:intergenic 35.0%
GCAAAAGATAAAAGAGATGG+AGG + tig0028644:20159-20178 None:intergenic 35.0%
AGTATACTTCTCCCAATTGT+AGG + tig0028644:20213-20232 None:intergenic 35.0%
CCAGTAACATCTTCAACTAT+TGG + tig0028644:20354-20373 None:intergenic 35.0%
CCAATAGTTGAAGATGTTAC+TGG - tig0028644:20351-20370 Msa1438840:intron 35.0%
TCTGGTAAATTCTCCAATGT+GGG + tig0028644:20501-20520 None:intergenic 35.0%
ATCTGGTAAATTCTCCAATG+TGG + tig0028644:20502-20521 None:intergenic 35.0%
CATATAAAATTAGAGGAGCC+CGG + tig0028644:20653-20672 None:intergenic 35.0%
! AACTTAAAGGTGTACCTTCA+AGG + tig0028644:20784-20803 None:intergenic 35.0%
TTTCATGTCAGAAGCAATTC+AGG + tig0028644:20920-20939 None:intergenic 35.0%
!! TTAGGGGAAGTATCTTCAAA+TGG - tig0028644:21036-21055 Msa1438840:CDS 35.0%
TGGTACTGTGGTAGTAAATA+TGG - tig0028644:21168-21187 Msa1438840:CDS 35.0%
ATATGGTCATTGTAGATTGC+AGG - tig0028644:21185-21204 Msa1438840:CDS 35.0%
TGAAGAAGATGAAGATGTAG+AGG - tig0028644:21230-21249 Msa1438840:CDS 35.0%
AGGACTATACTTCATCAGAT+GGG + tig0028644:21404-21423 None:intergenic 35.0%
AAGGACTATACTTCATCAGA+TGG + tig0028644:21405-21424 None:intergenic 35.0%
TTTCAATATTTACAGTGGGG+TGG - tig0028644:21501-21520 Msa1438840:intron 35.0%
ACATGAGTTCATGCAGAATA+GGG - tig0028644:21620-21639 Msa1438840:CDS 35.0%
! AAGTTACAGGTTTTACGAGA+TGG - tig0028644:21771-21790 Msa1438840:intron 35.0%
TTTACGAGATGGTCTAATTG+TGG - tig0028644:21782-21801 Msa1438840:intron 35.0%
AAAAGAATTGAAGGCCATTG+CGG - tig0028644:21872-21891 Msa1438840:intron 35.0%
AGAATCTCAAAGAAAGTTGC+AGG - tig0028644:21935-21954 Msa1438840:intron 35.0%
GCTTATGAGATCTTAGGAAT+CGG + tig0028644:22237-22256 None:intergenic 35.0%
TTATAACAGGCATCTTTACC+TGG + tig0028644:22261-22280 None:intergenic 35.0%
ATGTATGCACCAAATAAAGG+AGG + tig0028644:22303-22322 None:intergenic 35.0%
AGCATGTATGCACCAAATAA+AGG + tig0028644:22306-22325 None:intergenic 35.0%
CTTCATAGATATTGGTAGAC+AGG - tig0028644:22365-22384 Msa1438840:intron 35.0%
AGAATGATAGGCAGAAAGTT+GGG + tig0028644:22423-22442 None:intergenic 35.0%
AAGAATGATAGGCAGAAAGT+TGG + tig0028644:22424-22443 None:intergenic 35.0%
! GTTTCTGTTGGTTATTGTTG+GGG - tig0028644:22496-22515 Msa1438840:intron 35.0%
! TGCAACGTTCTTTTGTGTAT+TGG + tig0028644:22698-22717 None:intergenic 35.0%
GATTGCGATTTCGATTTCCA+TGG - tig0028644:18789-18808 Msa1438840:three_prime_UTR 40.0%
GTGTCAATCGTCTCTTGATT+AGG + tig0028644:18820-18839 None:intergenic 40.0%
TGCAATTGGTTGAGAAACAC+CGG + tig0028644:18857-18876 None:intergenic 40.0%
! TGAAGCTTTTGCAGTGCAAT+TGG + tig0028644:18871-18890 None:intergenic 40.0%
AATTGCACTGCAAAAGCTTC+AGG - tig0028644:18870-18889 Msa1438840:three_prime_UTR 40.0%
AAGATCCCAAATTGACAGCA+AGG + tig0028644:19268-19287 None:intergenic 40.0%
! GTTCTCTTTAATGGTGTTGG+AGG - tig0028644:19806-19825 Msa1438840:intron 40.0%
!!! TTTTTTTCATGGCAGGAGCA+TGG - tig0028644:19862-19881 Msa1438840:CDS 40.0%
CGAAGGAGACAGAAATTTGA+TGG - tig0028644:19921-19940 Msa1438840:CDS 40.0%
! TGCATGAAAAAAGGCATACC+TGG + tig0028644:19947-19966 None:intergenic 40.0%
TCTCTTGGATGAGTGACAAA+CGG + tig0028644:20267-20286 None:intergenic 40.0%
GCAAATTCCGATAGAGGATA+AGG - tig0028644:20293-20312 Msa1438840:CDS 40.0%
ATTCCGATAGAGGATAAGGA+TGG - tig0028644:20297-20316 Msa1438840:CDS 40.0%
CTACCATCCTTATCCTCTAT+CGG + tig0028644:20303-20322 None:intergenic 40.0%
ATGACACTCCCATGTATATC+TGG + tig0028644:20396-20415 None:intergenic 40.0%
CTGTCAGGTGAAGAATTAGT+CGG + tig0028644:20459-20478 None:intergenic 40.0%
TCTATGTCATTGCTGCTATC+TGG + tig0028644:20519-20538 None:intergenic 40.0%
AAAAGTGATTGCCTTGGGTT+AGG + tig0028644:20726-20745 None:intergenic 40.0%
! CCTCTAAAAGTGATTGCCTT+GGG + tig0028644:20731-20750 None:intergenic 40.0%
! TCCTCTAAAAGTGATTGCCT+TGG + tig0028644:20732-20751 None:intergenic 40.0%
TGCAGTTTCATTGTCCTTGA+AGG - tig0028644:20767-20786 Msa1438840:CDS 40.0%
! CTGTTCTGGTTGTAAAACAC+TGG + tig0028644:20848-20867 None:intergenic 40.0%
TAAAGTCAAAGTTACGGCAC+CGG + tig0028644:20872-20891 None:intergenic 40.0%
TCAACTCCTTGTGTCTTAGA+TGG + tig0028644:21015-21034 None:intergenic 40.0%
! AAGACACAAGGAGTTGACTT+AGG - tig0028644:21018-21037 Msa1438840:CDS 40.0%
! AGACACAAGGAGTTGACTTA+GGG - tig0028644:21019-21038 Msa1438840:CDS 40.0%
!! GGGAAGTATCTTCAAATGGA+AGG - tig0028644:21040-21059 Msa1438840:CDS 40.0%
AAGGAATTGTCATTATGCGG+AGG + tig0028644:21381-21400 None:intergenic 40.0%
GGGAAGGAATTGTCATTATG+CGG + tig0028644:21384-21403 None:intergenic 40.0%
CTATACTTCATCAGATGGGA+AGG + tig0028644:21400-21419 None:intergenic 40.0%
TGATGAAGCAGTAATGCTTG+AGG - tig0028644:21542-21561 Msa1438840:intron 40.0%
CTATTCTGCATGAACTCATG+TGG + tig0028644:21621-21640 None:intergenic 40.0%
CACATGAGTTCATGCAGAAT+AGG - tig0028644:21619-21638 Msa1438840:CDS 40.0%
CATGAGTTCATGCAGAATAG+GGG - tig0028644:21621-21640 Msa1438840:CDS 40.0%
TGTCTGCTTCTAATGATGCA+AGG + tig0028644:21848-21867 None:intergenic 40.0%
AGAGTAAGCAACACCGAAAT+GGG + tig0028644:22077-22096 None:intergenic 40.0%
AAGAGTAAGCAACACCGAAA+TGG + tig0028644:22078-22097 None:intergenic 40.0%
CTGATGGTAAAAATGCCAGA+TGG - tig0028644:22196-22215 Msa1438840:intron 40.0%
! GCGTGTGCTTTTACTTATCA+TGG - tig0028644:22775-22794 Msa1438840:five_prime_UTR 40.0%
! ATTCGTGGATGCTTTGTTGT+AGG - tig0028644:22802-22821 Msa1438840:five_prime_UTR 40.0%
ATTATTTGCAGGGGAAGAGA+TGG + tig0028644:22890-22909 None:intergenic 40.0%
CTTCTAAACTCTACGGCGTA+CGG - tig0028644:18664-18683 Msa1438840:three_prime_UTR 45.0%
GACACATTCATCAGCATCAC+CGG - tig0028644:18835-18854 Msa1438840:three_prime_UTR 45.0%
! GAGACAGAAATTTGATGGCC+AGG - tig0028644:19926-19945 Msa1438840:CDS 45.0%
CATGAAATCTCCTTGGGGAA+CGG + tig0028644:20103-20122 None:intergenic 45.0%
! TCATCTTGGTGCAACAAACC+AGG - tig0028644:20239-20258 Msa1438840:CDS 45.0%
GTTTGTCACTCATCCAAGAG+AGG - tig0028644:20266-20285 Msa1438840:CDS 45.0%
TCACTCATCCAAGAGAGGTA+AGG - tig0028644:20271-20290 Msa1438840:CDS 45.0%
GGAATTTGCCTTACCTCTCT+TGG + tig0028644:20282-20301 None:intergenic 45.0%
GGTAAGGCAAATTCCGATAG+AGG - tig0028644:20287-20306 Msa1438840:CDS 45.0%
AGTCAATCAACTCCTCAAGC+TGG - tig0028644:20321-20340 Msa1438840:CDS 45.0%
ATTGGAATATGGCCAGCTTG+AGG + tig0028644:20336-20355 None:intergenic 45.0%
CCCATGTATATCTGGACCTT+GGG + tig0028644:20388-20407 None:intergenic 45.0%
CCCAAGGTCCAGATATACAT+GGG - tig0028644:20385-20404 Msa1438840:intron 45.0%
TCCCATGTATATCTGGACCT+TGG + tig0028644:20389-20408 None:intergenic 45.0%
AATGATTCGTGCAGCCATTG+AGG - tig0028644:20545-20564 Msa1438840:CDS 45.0%
TTGTATTTCCCACATGGTGC+AGG - tig0028644:20683-20702 Msa1438840:intron 45.0%
!! CCCAAGGCAATCACTTTTAG+AGG - tig0028644:20728-20747 Msa1438840:intron 45.0%
! GTTTTACAACCAGAACAGCC+CGG - tig0028644:20850-20869 Msa1438840:intron 45.0%
AAAGTCAAAGTTACGGCACC+GGG + tig0028644:20871-20890 None:intergenic 45.0%
! CTTTTTCTTGCTCTGCTGTC+TGG + tig0028644:20948-20967 None:intergenic 45.0%
CAGCAGAGCAAGAAAAAGCA+CGG - tig0028644:20950-20969 Msa1438840:CDS 45.0%
! GACACAAGGAGTTGACTTAG+GGG - tig0028644:21020-21039 Msa1438840:CDS 45.0%
AGATGTAGAGGAGATGCCTT+TGG - tig0028644:21242-21261 Msa1438840:CDS 45.0%
TAGAGGAGATGCCTTTGGTT+AGG - tig0028644:21247-21266 Msa1438840:CDS 45.0%
AGATGCCTTTGGTTAGGAAC+AGG - tig0028644:21253-21272 Msa1438840:CDS 45.0%
GTAGACCTGTTCCTAACCAA+AGG + tig0028644:21261-21280 None:intergenic 45.0%
!! ATGTGTCACTTAGCTCCACA+GGG - tig0028644:21286-21305 Msa1438840:CDS 45.0%
ATTAATCGAGTCCAGCACAC+TGG - tig0028644:21326-21345 Msa1438840:CDS 45.0%
ATGCTTGAGGCTGCAATGTT+CGG - tig0028644:21555-21574 Msa1438840:intron 45.0%
ACTCATGTGGTGCATAAGCA+CGG + tig0028644:21608-21627 None:intergenic 45.0%
AAGAAAGTTGCAGGAAGAGC+AGG - tig0028644:21944-21963 Msa1438840:intron 45.0%
TGGTGGTAGAGAGACTTCTT+TGG + tig0028644:22143-22162 None:intergenic 45.0%
TCATCATCAGAGGATGGTTC+TGG + tig0028644:22163-22182 None:intergenic 45.0%
TGACAGTGCTGTGAATCTGA+TGG - tig0028644:22180-22199 Msa1438840:intron 45.0%
CCTGGAGCTTATGAGATCTT+AGG + tig0028644:22243-22262 None:intergenic 45.0%
CCTAAGATCTCATAAGCTCC+AGG - tig0028644:22240-22259 Msa1438840:intron 45.0%
CAAACCAAGCAGTTACAGAC+TGG - tig0028644:22389-22408 Msa1438840:intron 45.0%
AGCACTTTCCTCAACACCAA+AGG + tig0028644:22547-22566 None:intergenic 45.0%
!! TGAGGAAAGTGCTGTGACAT+TGG - tig0028644:22554-22573 Msa1438840:intron 45.0%
! CTCTTGATTAGGTGTCGCCA+TGG + tig0028644:18809-18828 None:intergenic 50.0%
! CGGATGATTTAGGGCCTGTT+TGG - tig0028644:19457-19476 Msa1438840:intron 50.0%
!! TTTTCATGGCAGGAGCATGG+TGG - tig0028644:19865-19884 Msa1438840:CDS 50.0%
CGTTCCCCAAGGAGATTTCA+TGG - tig0028644:20101-20120 Msa1438840:intron 50.0%
ACTGGAACTGTTCATGCCCA+AGG - tig0028644:20369-20388 Msa1438840:intron 50.0%
GCCCAAGGTCCAGATATACA+TGG - tig0028644:20384-20403 Msa1438840:intron 50.0%
GGTGAAGAATTAGTCGGAGC+AGG + tig0028644:20453-20472 None:intergenic 50.0%
!! TTCTCCAATGTGGGAGCACT+AGG + tig0028644:20492-20511 None:intergenic 50.0%
! ATTTTCCTCAGCCTCTCGTC+TGG + tig0028644:20574-20593 None:intergenic 50.0%
TGCAGGACGTGAGTGAATCT+GGG - tig0028644:20700-20719 Msa1438840:intron 50.0%
AAAGCACGGCGTGTACAAGA+AGG - tig0028644:20964-20983 Msa1438840:CDS 50.0%
CGTGTACAAGAAGGTGATGC+TGG - tig0028644:20973-20992 Msa1438840:CDS 50.0%
GAATTCATTGCAGCAGCCAC+AGG + tig0028644:21096-21115 None:intergenic 50.0%
GGTCATTGTAGATTGCAGGC+AGG - tig0028644:21189-21208 Msa1438840:CDS 50.0%
!! CATGTGTCACTTAGCTCCAC+AGG - tig0028644:21285-21304 Msa1438840:CDS 50.0%
! TGCAATGTTCGGTGGAATCC+CGG - tig0028644:21566-21585 Msa1438840:intron 50.0%
AGGGTGATATGCAAGAGGTG+CGG + tig0028644:21661-21680 None:intergenic 50.0%
GAAGGAGGGTGATATGCAAG+AGG + tig0028644:21666-21685 None:intergenic 50.0%
TCACCCTCCTTCACCATCAT+TGG - tig0028644:21674-21693 Msa1438840:intron 50.0%
! CCTCCAATGATGGTGAAGGA+GGG + tig0028644:21680-21699 None:intergenic 50.0%
! TGAGCCTCCAATGATGGTGA+AGG + tig0028644:21684-21703 None:intergenic 50.0%
GCGCTTGATAAGGGAACAAC+AGG - tig0028644:21704-21723 Msa1438840:intron 50.0%
!! TCATCAGAGGATGGTTCTGG+TGG + tig0028644:22160-22179 None:intergenic 50.0%
GCACTGTCATCATCAGAGGA+TGG + tig0028644:22169-22188 None:intergenic 50.0%
CACAGCACTGTCATCATCAG+AGG + tig0028644:22173-22192 None:intergenic 50.0%
CTCACCAGTCTGTAACTGCT+TGG + tig0028644:22396-22415 None:intergenic 50.0%
! CTGTTGGTTATTGTTGGGGC+AGG - tig0028644:22500-22519 Msa1438840:intron 50.0%
GGCAGGTAAGACCATATCCT+AGG - tig0028644:22517-22536 Msa1438840:intron 50.0%
GCTGTGACATTGGACGAACT+TGG - tig0028644:22564-22583 Msa1438840:intron 50.0%
GAAATCTCCTTGGGGAACGG+CGG + tig0028644:20100-20119 None:intergenic 55.0%
CTAGGTCTCGCACTACTGTC+AGG + tig0028644:20474-20493 None:intergenic 55.0%
GAGACCTAGTGCTCCCACAT+TGG - tig0028644:20485-20504 Msa1438840:CDS 55.0%
CTCTCGTCTGGATGCCTCAA+TGG + tig0028644:20562-20581 None:intergenic 55.0%
! CATTGAGGCATCCAGACGAG+AGG - tig0028644:20560-20579 Msa1438840:CDS 55.0%
ACTCACGTCCTGCACCATGT+GGG + tig0028644:20694-20713 None:intergenic 55.0%
GTGCAGGACGTGAGTGAATC+TGG - tig0028644:20699-20718 Msa1438840:intron 55.0%
GTGAATCTGGGCCTAACCCA+AGG - tig0028644:20712-20731 Msa1438840:intron 55.0%
GAAACTGCACGAGCAAGCTC+AGG + tig0028644:20756-20775 None:intergenic 55.0%
! AGGTGATGCTGGAGCACCTA+CGG - tig0028644:20984-21003 Msa1438840:CDS 55.0%
! GCAGGGCCATCTAAGACACA+AGG - tig0028644:21006-21025 Msa1438840:CDS 55.0%
TCCTGCATGTTGTCCACCTG+TGG - tig0028644:21077-21096 Msa1438840:CDS 55.0%
TTCATTGCAGCAGCCACAGG+TGG + tig0028644:21093-21112 None:intergenic 55.0%
TCACTTAGCTCCACAGGGTC+AGG - tig0028644:21291-21310 Msa1438840:CDS 55.0%
AGCATCTTTGCCTGACCCTG+TGG + tig0028644:21304-21323 None:intergenic 55.0%
ACTGGCAGGCACAACAGTTC+CGG - tig0028644:21344-21363 Msa1438840:CDS 55.0%
CTTGAGGCTGCAATGTTCGG+TGG - tig0028644:21558-21577 Msa1438840:intron 55.0%
! ATGTTCGGTGGAATCCCGGA+AGG - tig0028644:21570-21589 Msa1438840:intron 55.0%
GGCGATAACCACTTCCTTCC+GGG + tig0028644:21587-21606 None:intergenic 55.0%
CGGCGATAACCACTTCCTTC+CGG + tig0028644:21588-21607 None:intergenic 55.0%
! GGGTGATATGCAAGAGGTGC+GGG + tig0028644:21660-21679 None:intergenic 55.0%
CCCTCCTTCACCATCATTGG+AGG - tig0028644:21677-21696 Msa1438840:intron 55.0%
! GCCTCCAATGATGGTGAAGG+AGG + tig0028644:21681-21700 None:intergenic 55.0%
!! AAGCGCTGAGCCTCCAATGA+TGG + tig0028644:21690-21709 None:intergenic 55.0%
TGGAGGCTCAGCGCTTGATA+AGG - tig0028644:21694-21713 Msa1438840:intron 55.0%
GGAGGCTCAGCGCTTGATAA+GGG - tig0028644:21695-21714 Msa1438840:intron 55.0%
AGCAACCTCAGCTTCCGCAA+TGG + tig0028644:21889-21908 None:intergenic 55.0%
! CCAAAGGCACGCCTAGGATA+TGG + tig0028644:22531-22550 None:intergenic 55.0%
CCATATCCTAGGCGTGCCTT+TGG - tig0028644:22528-22547 Msa1438840:intron 55.0%
! TCAACACCAAAGGCACGCCT+AGG + tig0028644:22537-22556 None:intergenic 55.0%
!! TAGGCGTGCCTTTGGTGTTG+AGG - tig0028644:22536-22555 Msa1438840:intron 55.0%
GCAGAGCTGTCATGAGAGGC+CGG + tig0028644:20078-20097 None:intergenic 60.0%
GATGAGTGACAAACGGCGCC+TGG + tig0028644:20260-20279 None:intergenic 60.0%
CACTCACGTCCTGCACCATG+TGG + tig0028644:20695-20714 None:intergenic 60.0%
! ATGCTGGAGCACCTACGGCA+GGG - tig0028644:20989-21008 Msa1438840:CDS 60.0%
GTCTTAGATGGCCCTGCCGT+AGG + tig0028644:21003-21022 None:intergenic 60.0%
GCCACAGGTGGACAACATGC+AGG + tig0028644:21081-21100 None:intergenic 60.0%
ATCGAGTCCAGCACACTGGC+AGG - tig0028644:21330-21349 Msa1438840:CDS 60.0%
TGTTGTGCCTGCCAGTGTGC+TGG + tig0028644:21340-21359 None:intergenic 60.0%
!! TGCGGAGGACTGCTGCTTTC+CGG + tig0028644:21366-21385 None:intergenic 60.0%
GTGGGGTGGCATGTCTTCAG+TGG - tig0028644:21515-21534 Msa1438840:intron 60.0%
GGTGGAATCCCGGAAGGAAG+TGG - tig0028644:21576-21595 Msa1438840:intron 60.0%
! TATGCAAGAGGTGCGGGCTG+AGG + tig0028644:21654-21673 None:intergenic 60.0%
GAAGGCCATTGCGGAAGCTG+AGG - tig0028644:21881-21900 Msa1438840:intron 60.0%
AGCTGAGGTTGCTCGCGAAG+AGG - tig0028644:21896-21915 Msa1438840:intron 60.0%
TTAGGAATCGGCGCCCACGA+CGG + tig0028644:22225-22244 None:intergenic 60.0%
GGCGGCAGAGCTGTCATGAG+AGG + tig0028644:20082-20101 None:intergenic 65.0%
GGCATCCAGACGAGAGGCTG+AGG - tig0028644:20566-20585 Msa1438840:CDS 65.0%
! GTTACGGCACCGGGCTGTTC+TGG + tig0028644:20862-20881 None:intergenic 65.0%
! GATGCTGGAGCACCTACGGC+AGG - tig0028644:20988-21007 Msa1438840:CDS 65.0%
! CAAGAGGTGCGGGCTGAGGA+TGG + tig0028644:21650-21669 None:intergenic 65.0%
ATGCCAGATGGCAGCCGTCG+TGG - tig0028644:22208-22227 Msa1438840:intron 65.0%
TGCCAGATGGCAGCCGTCGT+GGG - tig0028644:22209-22228 Msa1438840:intron 65.0%
AGCTCTGCCGCCGTTCCCCA+AGG - tig0028644:20090-20109 Msa1438840:intron 70.0%
CGCCCACGACGGCTGCCATC+TGG + tig0028644:22214-22233 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0028644 gene 18617 22925 18617 ID=Msa1438840;Name=Msa1438840
tig0028644 mRNA 18617 22925 18617 ID=Msa1438840-mRNA-1;Parent=Msa1438840;Name=Msa1438840-mRNA-1;_AED=0.12;_eAED=0.12;_QI=191|0.9|0.90|1|1|1|11|296|588
tig0028644 exon 18617 19020 18617 ID=Msa1438840-mRNA-1:exon:11477;Parent=Msa1438840-mRNA-1
tig0028644 exon 19132 19188 19132 ID=Msa1438840-mRNA-1:exon:11476;Parent=Msa1438840-mRNA-1
tig0028644 exon 19281 19424 19281 ID=Msa1438840-mRNA-1:exon:11475;Parent=Msa1438840-mRNA-1
tig0028644 exon 19577 19708 19577 ID=Msa1438840-mRNA-1:exon:11474;Parent=Msa1438840-mRNA-1
tig0028644 exon 19817 20026 19817 ID=Msa1438840-mRNA-1:exon:11473;Parent=Msa1438840-mRNA-1
tig0028644 exon 20129 20360 20129 ID=Msa1438840-mRNA-1:exon:11472;Parent=Msa1438840-mRNA-1
tig0028644 exon 20481 20593 20481 ID=Msa1438840-mRNA-1:exon:11471;Parent=Msa1438840-mRNA-1
tig0028644 exon 20754 20837 20754 ID=Msa1438840-mRNA-1:exon:11470;Parent=Msa1438840-mRNA-1
tig0028644 exon 20919 21450 20919 ID=Msa1438840-mRNA-1:exon:11469;Parent=Msa1438840-mRNA-1
tig0028644 exon 21595 21665 21595 ID=Msa1438840-mRNA-1:exon:11468;Parent=Msa1438840-mRNA-1
tig0028644 exon 22651 22925 22651 ID=Msa1438840-mRNA-1:exon:11467;Parent=Msa1438840-mRNA-1
tig0028644 five_prime_UTR 22735 22925 22735 ID=Msa1438840-mRNA-1:five_prime_utr;Parent=Msa1438840-mRNA-1
tig0028644 CDS 22651 22734 22651 ID=Msa1438840-mRNA-1:cds;Parent=Msa1438840-mRNA-1
tig0028644 CDS 21595 21665 21595 ID=Msa1438840-mRNA-1:cds;Parent=Msa1438840-mRNA-1
tig0028644 CDS 20919 21450 20919 ID=Msa1438840-mRNA-1:cds;Parent=Msa1438840-mRNA-1
tig0028644 CDS 20754 20837 20754 ID=Msa1438840-mRNA-1:cds;Parent=Msa1438840-mRNA-1
tig0028644 CDS 20481 20593 20481 ID=Msa1438840-mRNA-1:cds;Parent=Msa1438840-mRNA-1
tig0028644 CDS 20129 20360 20129 ID=Msa1438840-mRNA-1:cds;Parent=Msa1438840-mRNA-1
tig0028644 CDS 19817 20026 19817 ID=Msa1438840-mRNA-1:cds;Parent=Msa1438840-mRNA-1
tig0028644 CDS 19577 19708 19577 ID=Msa1438840-mRNA-1:cds;Parent=Msa1438840-mRNA-1
tig0028644 CDS 19281 19424 19281 ID=Msa1438840-mRNA-1:cds;Parent=Msa1438840-mRNA-1
tig0028644 CDS 19132 19188 19132 ID=Msa1438840-mRNA-1:cds;Parent=Msa1438840-mRNA-1
tig0028644 CDS 18913 19020 18913 ID=Msa1438840-mRNA-1:cds;Parent=Msa1438840-mRNA-1
tig0028644 three_prime_UTR 18617 18912 18617 ID=Msa1438840-mRNA-1:three_prime_utr;Parent=Msa1438840-mRNA-1
Gene Sequence

>Msa1438840

ATGGCGACACCTAATCAAGAGACGATTGACACATTCATCAGCATCACCGGTGTTTCTCAACCAATTGCACTGCAAAAGCTTCAGGAGCATGGTGGTAGTCTTAATGAAGCTGTTAATGCATATTTCAGCGAAGGAGACAGAAATTTGATGGCCAGCTCTGCCGCCGTTCCCCAAGGAGATTTCATGGATATAGATGATCAACATGATGAAATTCTTAGACCTCCATCTCTTTTATCTTTTGCAAGAAATCTCGATCCATTTTCTCTTATTGATCCTACAATTGGGAGAAGTATACTTGATACTCATCTTGGTGCAACAAACCAGGCGCCGTTTGTCACTCATCCAAGAGAGGTAAGGCAAATTCCGATAGAGGATAAGGATGGTAGTCAATCAACTCCTCAAGCTGGCCATATTCCAATAGTTGAAGATGTTACTGGAACTGTTCATGCCCAAGGTCCAGATATACATGGGAGTGTCATAGTACTTGATGATGATGATGATGACAATACTCTGCCTGCTCCGACTAATTCTTCACCTGACAGTAGTGCGAGACCTAGTGCTCCCACATTGGAGAATTTACCAGATAGCAGCAATGACATAGAAGAAGAAATGATTCGTGCAGCCATTGAGGCATCCAGACGAGAGGCTGAGGAAAATTACAGCAATCATGAAGTTGACAGACAAATTGACGTGAGTGAATCTGGGCCTAACCCAAGGCAATCACTTTTAGAGGATCCTGAGCTTGCTCGTGCAGTTTCATTGTCCTTGAAGACAGCAGAGCAAGAAAAAGCACGGCGTGTACAAGAAGGTGATGCTGGAGCACCTACGGCAGGGCCATCTAAGACACAAGGAGTTGACTTAGGGGAAGTATCTTCAAATGGAAGTAAATATGGTCATTGTAGATTGCAGGCAGGAGAAGATGAAGATGAAGATGAAGAAGATGAAGATGTAGAGGAGATGCCTTTGGTTAGGAACAGGTCTACTAGACATGTGTCACTTAGCTCCACAGGGTCAGGCAAAGATGCTGAATTAATCGAGTCCAGCACACTGGCAGGCACAACAGTTCCGGAAAGCAGCAGTCCTCCGCATAATGACAATTCCTTCCCATCTGATGAATGGGGTGGCATGTCTTCAGTGGAACATGATGAAGCAGTAATGCTTGAGGCTGCAATGTTCGGTGGAATCCCGGAAGGAAGTGGTTATCGCCGTGCTTATGCACCACATGAGTTCATGCAGAATAGGGGTTTCCATCCTCAGCCCGCACCTCTTGCATATCACCCTCCTTCACCATCATTGGAGGCTCAGCGCTTGATAAGGGAACAACAGGATGATGAATACCTTGCATCATTAGAAGCAGACAGAGAAAAAGAATTGAAGGCCATTGCGGAAGCTGAGGTTGCTCGCGAAGAGGAAAAACAGAGAGCAGAAGAATCTCAAAGAAAGTTGCAGGAAGAGCAGGAATTGGAAGCACAGTTAGCTGCCAAAGAAGTCTCTCTACCACCAGAACCATCCTCTGATGATGACAGTGCTGTGAATCTGATGGTAAAAATGCCAGATGGCAGCCGTCGTGGGCGCCGATTCCTAAGATCTCATAAGCTCCAGTCTCTTTTCGACTTCATAGATATTGGTAGACAGGTCAAACCAAGCAGTTACAGACTGGTAAGACCATATCCTAGGCGTGCCTTTGGTGTTGAGGAAAGTGCTGTGACATTGGACGAACTTGGCTTAACCAATAAGCAAGAAGCTTTGTTTTTGGAGTTAGTCTGA

Protein sequence

>Msa1438840

MATPNQETIDTFISITGVSQPIALQKLQEHGGSLNEAVNAYFSEGDRNLMASSAAVPQGDFMDIDDQHDEILRPPSLLSFARNLDPFSLIDPTIGRSILDTHLGATNQAPFVTHPREVRQIPIEDKDGSQSTPQAGHIPIVEDVTGTVHAQGPDIHGSVIVLDDDDDDNTLPAPTNSSPDSSARPSAPTLENLPDSSNDIEEEMIRAAIEASRREAEENYSNHEVDRQIDVSESGPNPRQSLLEDPELARAVSLSLKTAEQEKARRVQEGDAGAPTAGPSKTQGVDLGEVSSNGSKYGHCRLQAGEDEDEDEEDEDVEEMPLVRNRSTRHVSLSSTGSGKDAELIESSTLAGTTVPESSSPPHNDNSFPSDEWGGMSSVEHDEAVMLEAAMFGGIPEGSGYRRAYAPHEFMQNRGFHPQPAPLAYHPPSPSLEAQRLIREQQDDEYLASLEADREKELKAIAEAEVAREEEKQRAEESQRKLQEEQELEAQLAAKEVSLPPEPSSDDDSAVNLMVKMPDGSRRGRRFLRSHKLQSLFDFIDIGRQVKPSSYRLVRPYPRRAFGVEESAVTLDELGLTNKQEALFLELV*