AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1208370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208370 MtrunA17_Chr4g0057301 96.429 588 13 2 1 588 1 580 0.0 1131
Msa1208370 MtrunA17_Chr8g0350381 41.743 218 121 3 372 588 323 535 1.01e-44 166
Msa1208370 MtrunA17_Chr8g0350381 34.028 288 137 15 1 266 36 292 1.97e-20 95.1
Msa1208370 MtrunA17_Chr4g0058781 31.138 167 101 5 432 586 206 370 3.31e-13 71.6
Msa1208370 MtrunA17_Chr1g0188921 31.746 189 88 5 429 587 288 465 2.04e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208370 AT4G11740.1 47.876 612 247 17 1 588 1 564 4.54e-137 410
Msa1208370 AT4G23040.1 45.805 596 244 17 1 588 1 525 3.47e-121 369
Msa1208370 AT4G11740.2 43.470 513 218 16 1 489 1 465 5.09e-89 284
Msa1208370 AT4G00752.1 53.846 117 47 1 472 588 359 468 1.05e-32 131
Msa1208370 AT4G00752.1 28.883 412 208 12 1 395 1 344 1.47e-28 119
Msa1208370 AT4G10790.1 31.953 169 86 5 438 587 321 479 3.90e-13 72.4

Find 175 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAAAGCTTCTTGCTTAT+TGG 0.125120 8_1:-66407558 None:intergenic
AACAATAGCCGTATCTAAAT+TGG 0.214361 8_1:-66407882 None:intergenic
TGCGGAGGACTGCTGCTTTC+CGG 0.215239 8_1:-66406329 None:intergenic
CCTGGAGCTTATGAGATCTT+AGG 0.219787 8_1:-66407206 None:intergenic
GTAGGATCAATAAGAGAAAA+TGG 0.285471 8_1:-66405158 None:intergenic
ATGATGAAACAAAGAGGATT+TGG 0.306844 8_1:-66403712 None:intergenic
GGCGATAACCACTTCCTTCC+GGG 0.309185 8_1:-66406550 None:intergenic
CGCCCACGACGGCTGCCATC+TGG 0.310057 8_1:-66407177 None:intergenic
CCAATAGTTGAAGATGTTAC+TGG 0.310930 8_1:+66405317 Msa1208370:CDS
CCAGTAACATCTTCAACTAT+TGG 0.316434 8_1:-66405317 None:intergenic
TCTCTTATTGATCCTACAAT+TGG 0.317933 8_1:+66405164 Msa1208370:CDS
TCTATGTCATTGCTGCTATC+TGG 0.323869 8_1:-66405482 None:intergenic
GTGCAGGACGTGAGTGAATC+TGG 0.324522 8_1:+66405665 Msa1208370:intron
TGCAGTTTCATTGTCCTTGA+AGG 0.329311 8_1:+66405733 Msa1208370:CDS
ATTGGATTTAAATTATTTGC+AGG 0.348056 8_1:-66407864 None:intergenic
GGAATTTGCCTTACCTCTCT+TGG 0.348395 8_1:-66405245 None:intergenic
ACATGAGTTCATGCAGAATA+GGG 0.354183 8_1:+66406586 Msa1208370:CDS
ATGACACTCCCATGTATATC+TGG 0.359077 8_1:-66405359 None:intergenic
AGTATACTTCTCCCAATTGT+AGG 0.369406 8_1:-66405176 None:intergenic
CCCATGTATATCTGGACCTT+GGG 0.371893 8_1:-66405351 None:intergenic
GTGTCAATTGTCTCTTGATT+AGG 0.374402 8_1:-66403782 None:intergenic
CATCTTCAACTATTGGAATA+TGG 0.374805 8_1:-66405310 None:intergenic
ATTCGTGGATGCTTTGTTGT+AGG 0.381356 8_1:+66407768 Msa1208370:three_prime_UTR
AGAATCTCAAAGAAAGTTGC+AGG 0.386414 8_1:+66406901 Msa1208370:CDS
CACATGAGTTCATGCAGAAT+AGG 0.393615 8_1:+66406585 Msa1208370:CDS
CGGCGATAACCACTTCCTTC+CGG 0.398155 8_1:-66406551 None:intergenic
TGTTGTGCCTGCCAGTGTGC+TGG 0.398181 8_1:-66406303 None:intergenic
TCACCCTCCTTCACCATCAT+TGG 0.401882 8_1:+66406640 Msa1208370:CDS
TGGTACTGTGGTAGTAAATA+TGG 0.401964 8_1:+66406134 Msa1208370:intron
AAAAGTGATTGCCTTGGGTT+AGG 0.405676 8_1:-66405689 None:intergenic
TCAACTCCTTGTGTCTTAGA+TGG 0.413557 8_1:-66405978 None:intergenic
ATATGGTCATTGTAGATTGC+AGG 0.414538 8_1:+66406151 Msa1208370:CDS
CCAAAGGCACGCCTAGGATA+TGG 0.415543 8_1:-66407494 None:intergenic
CTCTCGTCTGGATGCCTCAA+TGG 0.415695 8_1:-66405525 None:intergenic
CGTTCCCCAAGGAGATTTCA+TGG 0.423137 8_1:+66405067 Msa1208370:CDS
TCATCATCAGAGGATGGTTC+TGG 0.423795 8_1:-66407126 None:intergenic
AATATCCATGAAATCTCCTT+GGG 0.429488 8_1:-66405072 None:intergenic
CTCTTATTGATCCTACAATT+GGG 0.431169 8_1:+66405165 Msa1208370:CDS
TGGAGGCTCAGCGCTTGATA+AGG 0.432269 8_1:+66406660 Msa1208370:CDS
AGACACAAGGAGTTGACTTA+GGG 0.445695 8_1:+66405985 Msa1208370:CDS
TAGAGGAGATGCCTTTGGTT+AGG 0.447607 8_1:+66406213 Msa1208370:CDS
AACTTAAAGGTGTACCTTCA+AGG 0.447852 8_1:-66405747 None:intergenic
CTCACCAGTCTGTAACTGCT+TGG 0.449344 8_1:-66407359 None:intergenic
AGATGCCTTTGGTTAGGAAC+AGG 0.451031 8_1:+66406219 Msa1208370:CDS
CCTCTAAAAGTGATTGCCTT+GGG 0.451247 8_1:-66405694 None:intergenic
CCATATCCTAGGCGTGCCTT+TGG 0.452267 8_1:+66407494 Msa1208370:CDS
TTAGGTGTCGCCATGGAAAT+CGG 0.452415 8_1:-66403764 None:intergenic
TGGTGGTAGAGAGACTTCTT+TGG 0.454142 8_1:-66407106 None:intergenic
CGAAGGAGACAGAAATTTGA+TGG 0.458140 8_1:+66404887 Msa1208370:CDS
GATGAGTGACAAACGGCGCC+TGG 0.460210 8_1:-66405223 None:intergenic
TTGGATTTAAATTATTTGCA+GGG 0.460676 8_1:-66407863 None:intergenic
CAATATCCATGAAATCTCCT+TGG 0.464305 8_1:-66405073 None:intergenic
GGAGGCTCAGCGCTTGATAA+GGG 0.466359 8_1:+66406661 Msa1208370:CDS
AAGAAAGTTGCAGGAAGAGC+AGG 0.467946 8_1:+66406910 Msa1208370:CDS
GCAAATTCCGATAGAGGATA+AGG 0.469648 8_1:+66405259 Msa1208370:CDS
GCGCTTGATAAGGGAACAAC+AGG 0.471422 8_1:+66406670 Msa1208370:CDS
AAGACACAAGGAGTTGACTT+AGG 0.474030 8_1:+66405984 Msa1208370:CDS
TCACTTAGCTCCACAGGGTC+AGG 0.475192 8_1:+66406257 Msa1208370:CDS
CCCTCCTTCACCATCATTGG+AGG 0.475775 8_1:+66406643 Msa1208370:CDS
TGCAATGTTCGGTGGAATCC+CGG 0.476007 8_1:+66406532 Msa1208370:CDS
AGTATACTTGATACTCATCT+TGG 0.477017 8_1:+66405191 Msa1208370:CDS
CTTCATAGATATTGGTAGAC+AGG 0.477272 8_1:+66407331 Msa1208370:CDS
ATGCTTGAGGCTGCAATGTT+CGG 0.477862 8_1:+66406521 Msa1208370:CDS
GATGCTGGAGCACCTACGGC+AGG 0.478392 8_1:+66405954 Msa1208370:CDS
AGATGTAGAGGAGATGCCTT+TGG 0.483061 8_1:+66406208 Msa1208370:CDS
ACTTATCATGGAAATATTCG+TGG 0.488746 8_1:+66407753 Msa1208370:three_prime_UTR
GGTAAGGCAAATTCCGATAG+AGG 0.489342 8_1:+66405253 Msa1208370:CDS
AATTGCACTGCAAAAGCTTC+AGG 0.492758 8_1:+66403835 Msa1208370:CDS
CTTCTAAACTCTACGGCGTA+CGG 0.493880 8_1:+66403629 Msa1208370:five_prime_UTR
GGGTGATATGCAAGAGGTGC+GGG 0.494974 8_1:-66406623 None:intergenic
CATGTGTCACTTAGCTCCAC+AGG 0.497077 8_1:+66406251 Msa1208370:CDS
TTAGGGGAAGTATCTTCAAA+TGG 0.499966 8_1:+66406002 Msa1208370:CDS
ACTGGCAGGCACAACAGTTC+CGG 0.502879 8_1:+66406310 Msa1208370:CDS
CTACCATCCTTATCCTCTAT+CGG 0.505961 8_1:-66405266 None:intergenic
TCCCATGTATATCTGGACCT+TGG 0.507661 8_1:-66405352 None:intergenic
TTCTCCAATGTGGGAGCACT+AGG 0.508488 8_1:-66405455 None:intergenic
TCCTCTAAAAGTGATTGCCT+TGG 0.509045 8_1:-66405695 None:intergenic
GGTGAAGAATTAGTCGGAGC+AGG 0.510649 8_1:-66405416 None:intergenic
TGAAGAAGATGAAGATGTAG+AGG 0.512456 8_1:+66406196 Msa1208370:CDS
ATGCCAGATGGCAGCCGTCG+TGG 0.515721 8_1:+66407174 Msa1208370:CDS
GTCGCCATGGAAATCGGAAT+CGG 0.522273 8_1:-66403758 None:intergenic
CAAGAGGTGCGGGCTGAGGA+TGG 0.523670 8_1:-66406613 None:intergenic
CTAGGTCTCGCACTACTGTC+AGG 0.525591 8_1:-66405437 None:intergenic
TAGGCGTGCCTTTGGTGTTG+AGG 0.525926 8_1:+66407502 Msa1208370:CDS
GACACATTCATCAGCATCAC+CGG 0.531398 8_1:+66403800 Msa1208370:CDS
GAAACTGCACGAGCAAGCTC+AGG 0.531446 8_1:-66405719 None:intergenic
GCTTATGAGATCTTAGGAAT+CGG 0.531602 8_1:-66407200 None:intergenic
ATTATTTGCAGGGGAAGAGA+TGG 0.532664 8_1:-66407853 None:intergenic
TGCCAGATGGCAGCCGTCGT+GGG 0.532912 8_1:+66407175 Msa1208370:CDS
CCTAAGATCTCATAAGCTCC+AGG 0.534553 8_1:+66407206 Msa1208370:CDS
AGCATCTTTGCCTGACCCTG+TGG 0.535288 8_1:-66406267 None:intergenic
GGCATCCAGACGAGAGGCTG+AGG 0.536461 8_1:+66405532 Msa1208370:CDS
AAGGACTATACTTCATCAGA+TGG 0.537129 8_1:-66406368 None:intergenic
CGTGTACAAGAAGGTGATGC+TGG 0.537918 8_1:+66405939 Msa1208370:CDS
CTTGCAAAAGATAAAAGAGA+TGG 0.538424 8_1:-66405125 None:intergenic
TGAGGAAAGTGCTGTGACAT+TGG 0.539969 8_1:+66407520 Msa1208370:CDS
GAGACAGAAATTTGATGGCC+AGG 0.541997 8_1:+66404892 Msa1208370:CDS
ATCGAGTCCAGCACACTGGC+AGG 0.544729 8_1:+66406296 Msa1208370:CDS
AAGCGCTGAGCCTCCAATGA+TGG 0.546680 8_1:-66406653 None:intergenic
GGTGGAATCCCGGAAGGAAG+TGG 0.546810 8_1:+66406542 Msa1208370:CDS
AATATCAAATCACGTTCAAG+TGG 0.548174 8_1:-66403654 None:intergenic
CATGAAATCTCCTTGGGGAA+CGG 0.548281 8_1:-66405066 None:intergenic
GCTGTGACATTGGACGAACT+TGG 0.558529 8_1:+66407530 Msa1208370:CDS
AGGTGATGCTGGAGCACCTA+CGG 0.559902 8_1:+66405950 Msa1208370:CDS
CTATACTTCATCAGATGGGA+AGG 0.562623 8_1:-66406363 None:intergenic
TCTCTTGGATGAGTGACAAA+CGG 0.564540 8_1:-66405230 None:intergenic
TATCATTCTTCTAAACTCTA+CGG 0.567389 8_1:+66403622 Msa1208370:five_prime_UTR
AGCAACCTCAGCTTCCGCAA+TGG 0.570576 8_1:-66406852 None:intergenic
AATGATTCGCGCAGCCATTG+AGG 0.571010 8_1:+66405511 Msa1208370:CDS
CTCTTGATTAGGTGTCGCCA+TGG 0.571254 8_1:-66403771 None:intergenic
AGCTCTGCCGCCGTTCCCCA+AGG 0.572207 8_1:+66405056 Msa1208370:intron
TTTCAATATTTACAGTGGGG+TGG 0.572452 8_1:+66406467 Msa1208370:intron
ATCTGGTAAATTCTCCAATG+TGG 0.573046 8_1:-66405465 None:intergenic
GTTAATGCATATTTCAGCGA+AGG 0.573755 8_1:+66404870 Msa1208370:CDS
GCCCAAGGTCCAGATATACA+TGG 0.578375 8_1:+66405350 Msa1208370:CDS
CAAACCAAGCAGTTACAGAC+TGG 0.578668 8_1:+66407355 Msa1208370:CDS
GATTCCGATTCCGATTTCCA+TGG 0.580131 8_1:+66403754 Msa1208370:exon
TATGCAAGAGGTGCGGGCTG+AGG 0.580181 8_1:-66406617 None:intergenic
AGTCAATCAACTCCTCAAGC+TGG 0.583922 8_1:+66405287 Msa1208370:CDS
GGGAAGTATCTTCAAATGGA+AGG 0.585921 8_1:+66406006 Msa1208370:CDS
TGCAGGACGTGAGTGAATCT+GGG 0.588133 8_1:+66405666 Msa1208370:intron
GTGGGGTGGCATGTCTTCAG+TGG 0.588272 8_1:+66406481 Msa1208370:intron
CATGAGTTCATGCAGAATAG+GGG 0.589737 8_1:+66406587 Msa1208370:CDS
TCACTCATCCAAGAGAGGTA+AGG 0.590566 8_1:+66405237 Msa1208370:CDS
TCATCTTGGTGCAACAAACC+AGG 0.596500 8_1:+66405205 Msa1208370:CDS
ACTGGAACTGTTCATGCCCA+AGG 0.596583 8_1:+66405335 Msa1208370:CDS
TGCAATTGGTTGAGAAACAC+CGG 0.598757 8_1:-66403819 None:intergenic
GAAGGCCATTGCGGAAGCTG+AGG 0.599946 8_1:+66406847 Msa1208370:CDS
CACAGCACTGTCATCATCAG+AGG 0.600630 8_1:-66407136 None:intergenic
GTCTTAGATGGCCCTGCCGT+AGG 0.601129 8_1:-66405966 None:intergenic
TCTGGTAAATTCTCCAATGT+GGG 0.601343 8_1:-66405464 None:intergenic
GCAAAAGATAAAAGAGATGG+AGG 0.602367 8_1:-66405122 None:intergenic
TCAACACCAAAGGCACGCCT+AGG 0.602812 8_1:-66407500 None:intergenic
ACTCATGTGGTGCATAAGCA+CGG 0.608070 8_1:-66406571 None:intergenic
TGGATTTAAATTATTTGCAG+GGG 0.611208 8_1:-66407862 None:intergenic
TGTCTGCTTCTAATGATGCA+AGG 0.612016 8_1:-66406811 None:intergenic
AAAGCACGGCGTGTACAAGA+AGG 0.613259 8_1:+66405930 Msa1208370:CDS
AGCTGAGGTTGCTCGCGAAG+AGG 0.613437 8_1:+66406862 Msa1208370:CDS
GGTCATTGTAGATTGCAGGC+AGG 0.615122 8_1:+66406155 Msa1208370:CDS
TGAGCCTCCAATGATGGTGA+AGG 0.617026 8_1:-66406647 None:intergenic
CTTGAGGCTGCAATGTTCGG+TGG 0.621722 8_1:+66406524 Msa1208370:CDS
GAAATCTCCTTGGGGAACGG+CGG 0.621741 8_1:-66405063 None:intergenic
ATGCTGGAGCACCTACGGCA+GGG 0.622987 8_1:+66405955 Msa1208370:CDS
ATTGGAATATGGCCAGCTTG+AGG 0.623410 8_1:-66405299 None:intergenic
GTAGACCTGTTCCTAACCAA+AGG 0.623848 8_1:-66406224 None:intergenic
GCCTCCAATGATGGTGAAGG+AGG 0.625027 8_1:-66406644 None:intergenic
TTAGGAATCGGCGCCCACGA+CGG 0.625136 8_1:-66407188 None:intergenic
GGCAGGTAAGACCATATCCT+AGG 0.626242 8_1:+66407483 Msa1208370:intron
AGCACTTTCCTCAACACCAA+AGG 0.630829 8_1:-66407510 None:intergenic
AGGGTGATATGCAAGAGGTG+CGG 0.631640 8_1:-66406624 None:intergenic
AAAAGAATTGAAGGCCATTG+CGG 0.632012 8_1:+66406838 Msa1208370:CDS
GTGAATCTGGGCCTAACCCA+AGG 0.632081 8_1:+66405678 Msa1208370:CDS
CTGTCAGGTGAAGAATTAGT+CGG 0.632592 8_1:-66405422 None:intergenic
AGGACTATACTTCATCAGAT+GGG 0.635714 8_1:-66406367 None:intergenic
ATTAATCGAGTCCAGCACAC+TGG 0.635866 8_1:+66406292 Msa1208370:CDS
CCCAAGGTCCAGATATACAT+GGG 0.639087 8_1:+66405351 Msa1208370:CDS
ATGTTCGGTGGAATCCCGGA+AGG 0.645721 8_1:+66406536 Msa1208370:CDS
GCACTGTCATCATCAGAGGA+TGG 0.645765 8_1:-66407132 None:intergenic
TCATCAGAGGATGGTTCTGG+TGG 0.646164 8_1:-66407123 None:intergenic
GGGAAGGAATTGTCATTATG+CGG 0.648088 8_1:-66406347 None:intergenic
GAGACCTAGTGCTCCCACAT+TGG 0.648732 8_1:+66405451 Msa1208370:CDS
CTATTCTGCATGAACTCATG+TGG 0.657273 8_1:-66406584 None:intergenic
GACACAAGGAGTTGACTTAG+GGG 0.664345 8_1:+66405986 Msa1208370:CDS
ATTCCGATAGAGGATAAGGA+TGG 0.664553 8_1:+66405263 Msa1208370:CDS
AAGGAATTGTCATTATGCGG+AGG 0.670479 8_1:-66406344 None:intergenic
CATTGAGGCATCCAGACGAG+AGG 0.670635 8_1:+66405526 Msa1208370:CDS
ATATCAAATCACGTTCAAGT+GGG 0.682298 8_1:-66403653 None:intergenic
TGACAGTGCTGTGAATCTGA+TGG 0.684961 8_1:+66407146 Msa1208370:CDS
GTTTGTCACTCATCCAAGAG+AGG 0.689319 8_1:+66405232 Msa1208370:CDS
ATGTGTCACTTAGCTCCACA+GGG 0.692890 8_1:+66406252 Msa1208370:CDS
GCAGGGCCATCTAAGACACA+AGG 0.699427 8_1:+66405972 Msa1208370:CDS
CCTCCAATGATGGTGAAGGA+GGG 0.700161 8_1:-66406643 None:intergenic
ATATCCATGAAATCTCCTTG+GGG 0.701512 8_1:-66405071 None:intergenic
GAAGGAGGGTGATATGCAAG+AGG 0.710406 8_1:-66406629 None:intergenic
TGATGAAGCAGTAATGCTTG+AGG 0.722177 8_1:+66406508 Msa1208370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTTATTAAAATGTCT+TGG + chr8_1:66404121-66404140 Msa1208370:intron 10.0%
!! AATAAGATAATTTAAAAACA+AGG - chr8_1:66404331-66404350 None:intergenic 10.0%
!!! TGACTTTATTTTTTTTATAT+TGG + chr8_1:66405850-66405869 Msa1208370:intron 10.0%
!!! TTTTTTTTATATTGGAAATT+TGG + chr8_1:66405858-66405877 Msa1208370:intron 10.0%
!!! TTTGTAAACATTTTTTTTCA+TGG + chr8_1:66404817-66404836 Msa1208370:intron 15.0%
!!! ATTGTTTTTTTTGATATTGA+TGG + chr8_1:66405018-66405037 Msa1208370:intron 15.0%
!!! TATTTCTTAATTGTTTTTTC+CGG + chr8_1:66405597-66405616 Msa1208370:intron 15.0%
!! AATACAACATATAAAATTAG+AGG - chr8_1:66405626-66405645 None:intergenic 15.0%
!! AAAAAATAAAGTCAAAGTTA+CGG - chr8_1:66405844-66405863 None:intergenic 15.0%
!!! TAATTTTCAATATTTACAGT+GGG + chr8_1:66406463-66406482 Msa1208370:intron 15.0%
!!! AATTTTAAGATAAGAATGAT+AGG - chr8_1:66407401-66407420 None:intergenic 15.0%
!!! TGATTTGATATTTTTCAGTT+CGG + chr8_1:66403665-66403684 Msa1208370:five_prime_UTR 20.0%
!!! ACAAATTGTTATTACTCTTT+AGG + chr8_1:66403886-66403905 Msa1208370:intron 20.0%
!! TTATGGTTTATCTAATCAAT+AGG + chr8_1:66403949-66403968 Msa1208370:intron 20.0%
!! TATGGTTTATCTAATCAATA+GGG + chr8_1:66403950-66403969 Msa1208370:intron 20.0%
!! TCAACAATATAAGAAACTAA+TGG - chr8_1:66404604-66404623 None:intergenic 20.0%
!! TATGAGAAAGTAAACAATAT+CGG - chr8_1:66404733-66404752 None:intergenic 20.0%
!! ATAGAATAAGTTCTCTTTAA+TGG + chr8_1:66404763-66404782 Msa1208370:intron 20.0%
!! CAAAAAAAACAATGATGAAT+GGG - chr8_1:66405011-66405030 None:intergenic 20.0%
!! TCAAAAAAAACAATGATGAA+TGG - chr8_1:66405012-66405031 None:intergenic 20.0%
!! GGAAAAAACAATTAAGAAAT+AGG - chr8_1:66405598-66405617 None:intergenic 20.0%
!!! ATTTCTTAATTGTTTTTTCC+GGG + chr8_1:66405598-66405617 Msa1208370:intron 20.0%
!! CACTGTAAATATTGAAAATT+AGG - chr8_1:66406464-66406483 None:intergenic 20.0%
!!! CTAATTTTCAATATTTACAG+TGG + chr8_1:66406462-66406481 Msa1208370:intron 20.0%
!!! AATTTTCAATATTTACAGTG+GGG + chr8_1:66406464-66406483 Msa1208370:intron 20.0%
!!! CATCATTTTTCTGAATAATT+AGG - chr8_1:66407429-66407448 None:intergenic 20.0%
!!! TTTTTTTGTTTTGTTTCTGT+TGG + chr8_1:66407450-66407469 Msa1208370:intron 20.0%
!! TTGGATTTAAATTATTTGCA+GGG - chr8_1:66407866-66407885 None:intergenic 20.0%
!! ATTGGATTTAAATTATTTGC+AGG - chr8_1:66407867-66407886 None:intergenic 20.0%
! TATCATTCTTCTAAACTCTA+CGG + chr8_1:66403622-66403641 Msa1208370:five_prime_UTR 25.0%
! TGTAATCAGAAAAGTGAATA+AGG - chr8_1:66403869-66403888 None:intergenic 25.0%
!! AGCGATTGAATTTTCAATTA+TGG + chr8_1:66403932-66403951 Msa1208370:intron 25.0%
!! AAAATTTGTATTTTTCCCTC+TGG + chr8_1:66404011-66404030 Msa1208370:intron 25.0%
! TCAACAAATATAATTCCAGA+GGG - chr8_1:66404029-66404048 None:intergenic 25.0%
! TTCAACAAATATAATTCCAG+AGG - chr8_1:66404030-66404049 None:intergenic 25.0%
!! TATTTGTTGAATGATCAATG+AGG + chr8_1:66404039-66404058 Msa1208370:intron 25.0%
! TATAATCAGTTCTATGATGT+TGG + chr8_1:66404173-66404192 Msa1208370:intron 25.0%
! AACAAAGCAAGATTAAATCT+AGG - chr8_1:66404287-66404306 None:intergenic 25.0%
!!! TTATTGCTGATTTCTGAATT+TGG + chr8_1:66404305-66404324 Msa1208370:intron 25.0%
! AAACAAGAAGAAAACTGTAA+TGG - chr8_1:66404357-66404376 None:intergenic 25.0%
! AAAAATGTTTACAAATGCAG+AGG - chr8_1:66404812-66404831 None:intergenic 25.0%
!!! TAAACATTTTTTTTCATGGC+AGG + chr8_1:66404821-66404840 Msa1208370:intron 25.0%
!!! TTTTTTTTGATATTGATGGC+CGG + chr8_1:66405022-66405041 Msa1208370:intron 25.0%
!!! ATTAATTTGTATTTCCCACA+TGG + chr8_1:66405643-66405662 Msa1208370:intron 25.0%
! AATAAGAGAACACAACTTAA+AGG - chr8_1:66405763-66405782 None:intergenic 25.0%
! TTTGACTGTTATATATGACA+TGG + chr8_1:66406114-66406133 Msa1208370:intron 25.0%
! TCTGAAAATTCATAAAGTGA+AGG - chr8_1:66406390-66406409 None:intergenic 25.0%
!! CACTTTATGAATTTTCAGAA+CGG + chr8_1:66406391-66406410 Msa1208370:intron 25.0%
!! ACTTTATGAATTTTCAGAAC+GGG + chr8_1:66406392-66406411 Msa1208370:intron 25.0%
! TAGGTTAAAGTTTCTTACAT+AGG + chr8_1:66406711-66406730 Msa1208370:intron 25.0%
! CTTACATAGGTTAAAGTTAT+AGG + chr8_1:66406724-66406743 Msa1208370:intron 25.0%
! TAAATCTGTAACTAATTGCA+TGG + chr8_1:66406939-66406958 Msa1208370:intron 25.0%
! TTCATTGCAATTAGTTATAC+TGG + chr8_1:66406966-66406985 Msa1208370:intron 25.0%
! TAGAAATCAAATTCCCATTT+CGG + chr8_1:66407027-66407046 Msa1208370:intron 25.0%
!! AAAAGAGACTGAAAATTTTC+AGG - chr8_1:66407308-66407327 None:intergenic 25.0%
! TGGATTTAAATTATTTGCAG+GGG - chr8_1:66407865-66407884 None:intergenic 25.0%
!!! GTAGTTTCTGTTGTTTTTGA+GGG - chr8_1:66403602-66403621 None:intergenic 30.0%
!!! AGTAGTTTCTGTTGTTTTTG+AGG - chr8_1:66403603-66403622 None:intergenic 30.0%
ATATCAAATCACGTTCAAGT+GGG - chr8_1:66403656-66403675 None:intergenic 30.0%
AATATCAAATCACGTTCAAG+TGG - chr8_1:66403657-66403676 None:intergenic 30.0%
!!! GAGGATTTGGTTTTGTTTTT+GGG - chr8_1:66403702-66403721 None:intergenic 30.0%
!!! AGAGGATTTGGTTTTGTTTT+TGG - chr8_1:66403703-66403722 None:intergenic 30.0%
ATGATGAAACAAAGAGGATT+TGG - chr8_1:66403715-66403734 None:intergenic 30.0%
!!! GTTTTGATGATGAAACAAAG+AGG - chr8_1:66403721-66403740 None:intergenic 30.0%
CAGAAAAGTGAATAAGGAAA+AGG - chr8_1:66403863-66403882 None:intergenic 30.0%
ACTTATGCAAGTAGTTATCT+CGG + chr8_1:66404403-66404422 Msa1208370:intron 30.0%
TAGTTATCTCGGATGATTTA+GGG + chr8_1:66404414-66404433 Msa1208370:intron 30.0%
AAAAATAAGCCAATCCAAAC+AGG - chr8_1:66404440-66404459 None:intergenic 30.0%
TATTATTCATAAGCTTGTCG+AGG + chr8_1:66404503-66404522 Msa1208370:intron 30.0%
TAAGAAACTAATGGCATGTT+TGG - chr8_1:66404595-66404614 None:intergenic 30.0%
TAAGTTCTCTTTAATGGTGT+TGG + chr8_1:66404769-66404788 Msa1208370:intron 30.0%
TGCTTCTAATGCATGAAAAA+AGG - chr8_1:66404922-66404941 None:intergenic 30.0%
AATATCCATGAAATCTCCTT+GGG - chr8_1:66405075-66405094 None:intergenic 30.0%
CTTGCAAAAGATAAAAGAGA+TGG - chr8_1:66405128-66405147 None:intergenic 30.0%
GTAGGATCAATAAGAGAAAA+TGG - chr8_1:66405161-66405180 None:intergenic 30.0%
TCTCTTATTGATCCTACAAT+TGG + chr8_1:66405164-66405183 Msa1208370:CDS 30.0%
CTCTTATTGATCCTACAATT+GGG + chr8_1:66405165-66405184 Msa1208370:CDS 30.0%
AGTATACTTGATACTCATCT+TGG + chr8_1:66405191-66405210 Msa1208370:CDS 30.0%
CATCTTCAACTATTGGAATA+TGG - chr8_1:66405313-66405332 None:intergenic 30.0%
TTATATATGACATGGTACTG+TGG + chr8_1:66406122-66406141 Msa1208370:intron 30.0%
!! GTGTCACTTATTTCTTACAT+AGG + chr8_1:66406692-66406711 Msa1208370:intron 30.0%
! AAGTTATAGGTTTTACGAGA+TGG + chr8_1:66406737-66406756 Msa1208370:intron 30.0%
TGTCTATGTTTATTTGATGC+AGG + chr8_1:66406778-66406797 Msa1208370:intron 30.0%
AGACAGAGAAAAAGAATTGA+AGG + chr8_1:66406829-66406848 Msa1208370:CDS 30.0%
ATCAAACTCATACTTTCCTA+TGG + chr8_1:66407003-66407022 Msa1208370:intron 30.0%
! GGAATTTGATTTCTATCCAT+AGG - chr8_1:66407022-66407041 None:intergenic 30.0%
! TTGCATTTTCATAAACTGTC+AGG + chr8_1:66407062-66407081 Msa1208370:intron 30.0%
TTTCATAAACTGTCAGGAAT+TGG + chr8_1:66407068-66407087 Msa1208370:intron 30.0%
! CTAGCAGCATATTTTATAAC+AGG - chr8_1:66407240-66407259 None:intergenic 30.0%
! TAGTGTTTTCCTCCTTTATT+TGG + chr8_1:66407257-66407276 Msa1208370:intron 30.0%
! CTTTTCGACTTCATAGATAT+TGG + chr8_1:66407323-66407342 Msa1208370:CDS 30.0%
!! TTGTTTCTGTTGGTTATTGT+TGG + chr8_1:66407460-66407479 Msa1208370:intron 30.0%
! TGTTTCTGTTGGTTATTGTT+GGG + chr8_1:66407461-66407480 Msa1208370:intron 30.0%
AAACAAAGCTTCTTGCTTAT+TGG - chr8_1:66407561-66407580 None:intergenic 30.0%
!!! TAAGCAAGAAGCTTTGTTTT+TGG + chr8_1:66407562-66407581 Msa1208370:CDS 30.0%
!!! CTTCTAGCTTTTTTTCACAA+GGG - chr8_1:66407600-66407619 None:intergenic 30.0%
!!! TCTTCTAGCTTTTTTTCACA+AGG - chr8_1:66407601-66407620 None:intergenic 30.0%
!! AAGAACGTTGCATTTTAATC+TGG + chr8_1:66407672-66407691 Msa1208370:three_prime_UTR 30.0%
ACTTATCATGGAAATATTCG+TGG + chr8_1:66407753-66407772 Msa1208370:three_prime_UTR 30.0%
GTGTCAATTGTCTCTTGATT+AGG - chr8_1:66403785-66403804 None:intergenic 35.0%
! TATGATCCTTGCTGTCAATA+TGG + chr8_1:66404225-66404244 Msa1208370:intron 35.0%
! ATGATCCTTGCTGTCAATAT+GGG + chr8_1:66404226-66404245 Msa1208370:intron 35.0%
!! TCTTGTTGACTTAAAGCTAG+AGG + chr8_1:66404250-66404269 Msa1208370:intron 35.0%
GTAGTTATCTCGGATGATTT+AGG + chr8_1:66404413-66404432 Msa1208370:intron 35.0%
AACTAATGGCATGTTTGGAT+TGG - chr8_1:66404590-66404609 None:intergenic 35.0%
TTAGCGTTAGATCTTACTCT+TGG + chr8_1:66404639-66404658 Msa1208370:intron 35.0%
TAGAAGCAAACTAGCATAAG+AGG - chr8_1:66404699-66404718 None:intergenic 35.0%
GTTAATGCATATTTCAGCGA+AGG + chr8_1:66404870-66404889 Msa1208370:CDS 35.0%
AGAAATGTACCTTGTCACTA+TGG + chr8_1:66404953-66404972 Msa1208370:intron 35.0%
AATGTAACACCATAGTGACA+AGG - chr8_1:66404965-66404984 None:intergenic 35.0%
ATATCCATGAAATCTCCTTG+GGG - chr8_1:66405074-66405093 None:intergenic 35.0%
CAATATCCATGAAATCTCCT+TGG - chr8_1:66405076-66405095 None:intergenic 35.0%
GCAAAAGATAAAAGAGATGG+AGG - chr8_1:66405125-66405144 None:intergenic 35.0%
AGTATACTTCTCCCAATTGT+AGG - chr8_1:66405179-66405198 None:intergenic 35.0%
CCAGTAACATCTTCAACTAT+TGG - chr8_1:66405320-66405339 None:intergenic 35.0%
CCAATAGTTGAAGATGTTAC+TGG + chr8_1:66405317-66405336 Msa1208370:CDS 35.0%
TCTGGTAAATTCTCCAATGT+GGG - chr8_1:66405467-66405486 None:intergenic 35.0%
ATCTGGTAAATTCTCCAATG+TGG - chr8_1:66405468-66405487 None:intergenic 35.0%
CATATAAAATTAGAGGAGCC+CGG - chr8_1:66405619-66405638 None:intergenic 35.0%
! AACTTAAAGGTGTACCTTCA+AGG - chr8_1:66405750-66405769 None:intergenic 35.0%
TTTCATGTCAGAAGCAATTC+AGG - chr8_1:66405886-66405905 None:intergenic 35.0%
!! TTAGGGGAAGTATCTTCAAA+TGG + chr8_1:66406002-66406021 Msa1208370:CDS 35.0%
TGGTACTGTGGTAGTAAATA+TGG + chr8_1:66406134-66406153 Msa1208370:intron 35.0%
ATATGGTCATTGTAGATTGC+AGG + chr8_1:66406151-66406170 Msa1208370:CDS 35.0%
TGAAGAAGATGAAGATGTAG+AGG + chr8_1:66406196-66406215 Msa1208370:CDS 35.0%
AGGACTATACTTCATCAGAT+GGG - chr8_1:66406370-66406389 None:intergenic 35.0%
AAGGACTATACTTCATCAGA+TGG - chr8_1:66406371-66406390 None:intergenic 35.0%
TTTCAATATTTACAGTGGGG+TGG + chr8_1:66406467-66406486 Msa1208370:intron 35.0%
ACATGAGTTCATGCAGAATA+GGG + chr8_1:66406586-66406605 Msa1208370:CDS 35.0%
TTTACGAGATGGTCTAATTG+TGG + chr8_1:66406748-66406767 Msa1208370:intron 35.0%
AAAAGAATTGAAGGCCATTG+CGG + chr8_1:66406838-66406857 Msa1208370:CDS 35.0%
AGAATCTCAAAGAAAGTTGC+AGG + chr8_1:66406901-66406920 Msa1208370:CDS 35.0%
GCTTATGAGATCTTAGGAAT+CGG - chr8_1:66407203-66407222 None:intergenic 35.0%
TTATAACAGGCATCTTTACC+TGG - chr8_1:66407227-66407246 None:intergenic 35.0%
ATGTATGCACCAAATAAAGG+AGG - chr8_1:66407269-66407288 None:intergenic 35.0%
AGCATGTATGCACCAAATAA+AGG - chr8_1:66407272-66407291 None:intergenic 35.0%
CTTCATAGATATTGGTAGAC+AGG + chr8_1:66407331-66407350 Msa1208370:CDS 35.0%
AGAATGATAGGCAGAAAGTT+GGG - chr8_1:66407389-66407408 None:intergenic 35.0%
AAGAATGATAGGCAGAAAGT+TGG - chr8_1:66407390-66407409 None:intergenic 35.0%
! GTTTCTGTTGGTTATTGTTG+GGG + chr8_1:66407462-66407481 Msa1208370:intron 35.0%
! TGCAACGTTCTTTTGTGTAT+TGG - chr8_1:66407664-66407683 None:intergenic 35.0%
TGCAATTGGTTGAGAAACAC+CGG - chr8_1:66403822-66403841 None:intergenic 40.0%
! TGAAGCTTTTGCAGTGCAAT+TGG - chr8_1:66403836-66403855 None:intergenic 40.0%
AATTGCACTGCAAAAGCTTC+AGG + chr8_1:66403835-66403854 Msa1208370:CDS 40.0%
AAGATCCCATATTGACAGCA+AGG - chr8_1:66404234-66404253 None:intergenic 40.0%
! GTTCTCTTTAATGGTGTTGG+AGG + chr8_1:66404772-66404791 Msa1208370:intron 40.0%
!!! TTTTTTTCATGGCAGGAGCA+TGG + chr8_1:66404828-66404847 Msa1208370:intron 40.0%
CGAAGGAGACAGAAATTTGA+TGG + chr8_1:66404887-66404906 Msa1208370:CDS 40.0%
! TGCATGAAAAAAGGCATACC+TGG - chr8_1:66404913-66404932 None:intergenic 40.0%
TCTCTTGGATGAGTGACAAA+CGG - chr8_1:66405233-66405252 None:intergenic 40.0%
GCAAATTCCGATAGAGGATA+AGG + chr8_1:66405259-66405278 Msa1208370:CDS 40.0%
ATTCCGATAGAGGATAAGGA+TGG + chr8_1:66405263-66405282 Msa1208370:CDS 40.0%
CTACCATCCTTATCCTCTAT+CGG - chr8_1:66405269-66405288 None:intergenic 40.0%
ATGACACTCCCATGTATATC+TGG - chr8_1:66405362-66405381 None:intergenic 40.0%
CTGTCAGGTGAAGAATTAGT+CGG - chr8_1:66405425-66405444 None:intergenic 40.0%
TCTATGTCATTGCTGCTATC+TGG - chr8_1:66405485-66405504 None:intergenic 40.0%
AAAAGTGATTGCCTTGGGTT+AGG - chr8_1:66405692-66405711 None:intergenic 40.0%
! CCTCTAAAAGTGATTGCCTT+GGG - chr8_1:66405697-66405716 None:intergenic 40.0%
! TCCTCTAAAAGTGATTGCCT+TGG - chr8_1:66405698-66405717 None:intergenic 40.0%
TGCAGTTTCATTGTCCTTGA+AGG + chr8_1:66405733-66405752 Msa1208370:CDS 40.0%
! CTGTTCTGGTTGTAAAACAC+TGG - chr8_1:66405814-66405833 None:intergenic 40.0%
TAAAGTCAAAGTTACGGCAC+CGG - chr8_1:66405838-66405857 None:intergenic 40.0%
TCAACTCCTTGTGTCTTAGA+TGG - chr8_1:66405981-66406000 None:intergenic 40.0%
! AAGACACAAGGAGTTGACTT+AGG + chr8_1:66405984-66406003 Msa1208370:CDS 40.0%
! AGACACAAGGAGTTGACTTA+GGG + chr8_1:66405985-66406004 Msa1208370:CDS 40.0%
!! GGGAAGTATCTTCAAATGGA+AGG + chr8_1:66406006-66406025 Msa1208370:CDS 40.0%
AAGGAATTGTCATTATGCGG+AGG - chr8_1:66406347-66406366 None:intergenic 40.0%
GGGAAGGAATTGTCATTATG+CGG - chr8_1:66406350-66406369 None:intergenic 40.0%
CTATACTTCATCAGATGGGA+AGG - chr8_1:66406366-66406385 None:intergenic 40.0%
TGATGAAGCAGTAATGCTTG+AGG + chr8_1:66406508-66406527 Msa1208370:CDS 40.0%
CTATTCTGCATGAACTCATG+TGG - chr8_1:66406587-66406606 None:intergenic 40.0%
CACATGAGTTCATGCAGAAT+AGG + chr8_1:66406585-66406604 Msa1208370:CDS 40.0%
CATGAGTTCATGCAGAATAG+GGG + chr8_1:66406587-66406606 Msa1208370:CDS 40.0%
TGTCTGCTTCTAATGATGCA+AGG - chr8_1:66406814-66406833 None:intergenic 40.0%
AGAGTAAGCAACACCGAAAT+GGG - chr8_1:66407043-66407062 None:intergenic 40.0%
AAGAGTAAGCAACACCGAAA+TGG - chr8_1:66407044-66407063 None:intergenic 40.0%
CTGATGGTAAAAATGCCAGA+TGG + chr8_1:66407162-66407181 Msa1208370:CDS 40.0%
! GCGTGTGCTTTTACTTATCA+TGG + chr8_1:66407741-66407760 Msa1208370:three_prime_UTR 40.0%
! ATTCGTGGATGCTTTGTTGT+AGG + chr8_1:66407768-66407787 Msa1208370:three_prime_UTR 40.0%
ATTATTTGCAGGGGAAGAGA+TGG - chr8_1:66407856-66407875 None:intergenic 40.0%
CTTCTAAACTCTACGGCGTA+CGG + chr8_1:66403629-66403648 Msa1208370:five_prime_UTR 45.0%
GATTCCGATTCCGATTTCCA+TGG + chr8_1:66403754-66403773 Msa1208370:exon 45.0%
! TTAGGTGTCGCCATGGAAAT+CGG - chr8_1:66403767-66403786 None:intergenic 45.0%
GACACATTCATCAGCATCAC+CGG + chr8_1:66403800-66403819 Msa1208370:CDS 45.0%
! GATTTAGGGCCTGTTTGGAT+TGG + chr8_1:66404428-66404447 Msa1208370:intron 45.0%
! GAGACAGAAATTTGATGGCC+AGG + chr8_1:66404892-66404911 Msa1208370:CDS 45.0%
CATGAAATCTCCTTGGGGAA+CGG - chr8_1:66405069-66405088 None:intergenic 45.0%
! TCATCTTGGTGCAACAAACC+AGG + chr8_1:66405205-66405224 Msa1208370:CDS 45.0%
GTTTGTCACTCATCCAAGAG+AGG + chr8_1:66405232-66405251 Msa1208370:CDS 45.0%
TCACTCATCCAAGAGAGGTA+AGG + chr8_1:66405237-66405256 Msa1208370:CDS 45.0%
GGAATTTGCCTTACCTCTCT+TGG - chr8_1:66405248-66405267 None:intergenic 45.0%
GGTAAGGCAAATTCCGATAG+AGG + chr8_1:66405253-66405272 Msa1208370:CDS 45.0%
AGTCAATCAACTCCTCAAGC+TGG + chr8_1:66405287-66405306 Msa1208370:CDS 45.0%
ATTGGAATATGGCCAGCTTG+AGG - chr8_1:66405302-66405321 None:intergenic 45.0%
CCCATGTATATCTGGACCTT+GGG - chr8_1:66405354-66405373 None:intergenic 45.0%
CCCAAGGTCCAGATATACAT+GGG + chr8_1:66405351-66405370 Msa1208370:CDS 45.0%
TCCCATGTATATCTGGACCT+TGG - chr8_1:66405355-66405374 None:intergenic 45.0%
TTGTATTTCCCACATGGTGC+AGG + chr8_1:66405649-66405668 Msa1208370:intron 45.0%
!! CCCAAGGCAATCACTTTTAG+AGG + chr8_1:66405694-66405713 Msa1208370:CDS 45.0%
! GTTTTACAACCAGAACAGCC+CGG + chr8_1:66405816-66405835 Msa1208370:intron 45.0%
AAAGTCAAAGTTACGGCACC+GGG - chr8_1:66405837-66405856 None:intergenic 45.0%
! CTTTTTCTTGCTCTGCTGTC+TGG - chr8_1:66405914-66405933 None:intergenic 45.0%
CAGCAGAGCAAGAAAAAGCA+CGG + chr8_1:66405916-66405935 Msa1208370:CDS 45.0%
! GACACAAGGAGTTGACTTAG+GGG + chr8_1:66405986-66406005 Msa1208370:CDS 45.0%
AGATGTAGAGGAGATGCCTT+TGG + chr8_1:66406208-66406227 Msa1208370:CDS 45.0%
TAGAGGAGATGCCTTTGGTT+AGG + chr8_1:66406213-66406232 Msa1208370:CDS 45.0%
AGATGCCTTTGGTTAGGAAC+AGG + chr8_1:66406219-66406238 Msa1208370:CDS 45.0%
GTAGACCTGTTCCTAACCAA+AGG - chr8_1:66406227-66406246 None:intergenic 45.0%
!! ATGTGTCACTTAGCTCCACA+GGG + chr8_1:66406252-66406271 Msa1208370:CDS 45.0%
ATTAATCGAGTCCAGCACAC+TGG + chr8_1:66406292-66406311 Msa1208370:CDS 45.0%
ATGCTTGAGGCTGCAATGTT+CGG + chr8_1:66406521-66406540 Msa1208370:CDS 45.0%
ACTCATGTGGTGCATAAGCA+CGG - chr8_1:66406574-66406593 None:intergenic 45.0%
AAGAAAGTTGCAGGAAGAGC+AGG + chr8_1:66406910-66406929 Msa1208370:CDS 45.0%
TGGTGGTAGAGAGACTTCTT+TGG - chr8_1:66407109-66407128 None:intergenic 45.0%
TCATCATCAGAGGATGGTTC+TGG - chr8_1:66407129-66407148 None:intergenic 45.0%
TGACAGTGCTGTGAATCTGA+TGG + chr8_1:66407146-66407165 Msa1208370:CDS 45.0%
CCTGGAGCTTATGAGATCTT+AGG - chr8_1:66407209-66407228 None:intergenic 45.0%
CCTAAGATCTCATAAGCTCC+AGG + chr8_1:66407206-66407225 Msa1208370:CDS 45.0%
CAAACCAAGCAGTTACAGAC+TGG + chr8_1:66407355-66407374 Msa1208370:CDS 45.0%
AGCACTTTCCTCAACACCAA+AGG - chr8_1:66407513-66407532 None:intergenic 45.0%
!! TGAGGAAAGTGCTGTGACAT+TGG + chr8_1:66407520-66407539 Msa1208370:CDS 45.0%
GTCGCCATGGAAATCGGAAT+CGG - chr8_1:66403761-66403780 None:intergenic 50.0%
! CTCTTGATTAGGTGTCGCCA+TGG - chr8_1:66403774-66403793 None:intergenic 50.0%
! CGGATGATTTAGGGCCTGTT+TGG + chr8_1:66404423-66404442 Msa1208370:intron 50.0%
!! TTTTCATGGCAGGAGCATGG+TGG + chr8_1:66404831-66404850 Msa1208370:intron 50.0%
CGTTCCCCAAGGAGATTTCA+TGG + chr8_1:66405067-66405086 Msa1208370:CDS 50.0%
ACTGGAACTGTTCATGCCCA+AGG + chr8_1:66405335-66405354 Msa1208370:CDS 50.0%
GCCCAAGGTCCAGATATACA+TGG + chr8_1:66405350-66405369 Msa1208370:CDS 50.0%
GGTGAAGAATTAGTCGGAGC+AGG - chr8_1:66405419-66405438 None:intergenic 50.0%
!! TTCTCCAATGTGGGAGCACT+AGG - chr8_1:66405458-66405477 None:intergenic 50.0%
AATGATTCGCGCAGCCATTG+AGG + chr8_1:66405511-66405530 Msa1208370:CDS 50.0%
! ATTTTCCTCAGCCTCTCGTC+TGG - chr8_1:66405540-66405559 None:intergenic 50.0%
TGCAGGACGTGAGTGAATCT+GGG + chr8_1:66405666-66405685 Msa1208370:intron 50.0%
AAAGCACGGCGTGTACAAGA+AGG + chr8_1:66405930-66405949 Msa1208370:CDS 50.0%
CGTGTACAAGAAGGTGATGC+TGG + chr8_1:66405939-66405958 Msa1208370:CDS 50.0%
GAATTCATTGCAGCAGCCAC+AGG - chr8_1:66406062-66406081 None:intergenic 50.0%
GGTCATTGTAGATTGCAGGC+AGG + chr8_1:66406155-66406174 Msa1208370:CDS 50.0%
!! CATGTGTCACTTAGCTCCAC+AGG + chr8_1:66406251-66406270 Msa1208370:CDS 50.0%
! TGCAATGTTCGGTGGAATCC+CGG + chr8_1:66406532-66406551 Msa1208370:CDS 50.0%
AGGGTGATATGCAAGAGGTG+CGG - chr8_1:66406627-66406646 None:intergenic 50.0%
GAAGGAGGGTGATATGCAAG+AGG - chr8_1:66406632-66406651 None:intergenic 50.0%
TCACCCTCCTTCACCATCAT+TGG + chr8_1:66406640-66406659 Msa1208370:CDS 50.0%
! CCTCCAATGATGGTGAAGGA+GGG - chr8_1:66406646-66406665 None:intergenic 50.0%
! TGAGCCTCCAATGATGGTGA+AGG - chr8_1:66406650-66406669 None:intergenic 50.0%
GCGCTTGATAAGGGAACAAC+AGG + chr8_1:66406670-66406689 Msa1208370:CDS 50.0%
!! TCATCAGAGGATGGTTCTGG+TGG - chr8_1:66407126-66407145 None:intergenic 50.0%
GCACTGTCATCATCAGAGGA+TGG - chr8_1:66407135-66407154 None:intergenic 50.0%
CACAGCACTGTCATCATCAG+AGG - chr8_1:66407139-66407158 None:intergenic 50.0%
CTCACCAGTCTGTAACTGCT+TGG - chr8_1:66407362-66407381 None:intergenic 50.0%
! CTGTTGGTTATTGTTGGGGC+AGG + chr8_1:66407466-66407485 Msa1208370:intron 50.0%
GGCAGGTAAGACCATATCCT+AGG + chr8_1:66407483-66407502 Msa1208370:intron 50.0%
GCTGTGACATTGGACGAACT+TGG + chr8_1:66407530-66407549 Msa1208370:CDS 50.0%
GAAATCTCCTTGGGGAACGG+CGG - chr8_1:66405066-66405085 None:intergenic 55.0%
CTAGGTCTCGCACTACTGTC+AGG - chr8_1:66405440-66405459 None:intergenic 55.0%
GAGACCTAGTGCTCCCACAT+TGG + chr8_1:66405451-66405470 Msa1208370:CDS 55.0%
CTCTCGTCTGGATGCCTCAA+TGG - chr8_1:66405528-66405547 None:intergenic 55.0%
! CATTGAGGCATCCAGACGAG+AGG + chr8_1:66405526-66405545 Msa1208370:CDS 55.0%
ACTCACGTCCTGCACCATGT+GGG - chr8_1:66405660-66405679 None:intergenic 55.0%
GTGCAGGACGTGAGTGAATC+TGG + chr8_1:66405665-66405684 Msa1208370:intron 55.0%
GTGAATCTGGGCCTAACCCA+AGG + chr8_1:66405678-66405697 Msa1208370:CDS 55.0%
GAAACTGCACGAGCAAGCTC+AGG - chr8_1:66405722-66405741 None:intergenic 55.0%
! AGGTGATGCTGGAGCACCTA+CGG + chr8_1:66405950-66405969 Msa1208370:CDS 55.0%
! GCAGGGCCATCTAAGACACA+AGG + chr8_1:66405972-66405991 Msa1208370:CDS 55.0%
TCCTGCATGTTGTCCACCTG+TGG + chr8_1:66406043-66406062 Msa1208370:intron 55.0%
TTCATTGCAGCAGCCACAGG+TGG - chr8_1:66406059-66406078 None:intergenic 55.0%
TCACTTAGCTCCACAGGGTC+AGG + chr8_1:66406257-66406276 Msa1208370:CDS 55.0%
AGCATCTTTGCCTGACCCTG+TGG - chr8_1:66406270-66406289 None:intergenic 55.0%
ACTGGCAGGCACAACAGTTC+CGG + chr8_1:66406310-66406329 Msa1208370:CDS 55.0%
CTTGAGGCTGCAATGTTCGG+TGG + chr8_1:66406524-66406543 Msa1208370:CDS 55.0%
! ATGTTCGGTGGAATCCCGGA+AGG + chr8_1:66406536-66406555 Msa1208370:CDS 55.0%
GGCGATAACCACTTCCTTCC+GGG - chr8_1:66406553-66406572 None:intergenic 55.0%
CGGCGATAACCACTTCCTTC+CGG - chr8_1:66406554-66406573 None:intergenic 55.0%
! GGGTGATATGCAAGAGGTGC+GGG - chr8_1:66406626-66406645 None:intergenic 55.0%
CCCTCCTTCACCATCATTGG+AGG + chr8_1:66406643-66406662 Msa1208370:CDS 55.0%
! GCCTCCAATGATGGTGAAGG+AGG - chr8_1:66406647-66406666 None:intergenic 55.0%
!! AAGCGCTGAGCCTCCAATGA+TGG - chr8_1:66406656-66406675 None:intergenic 55.0%
TGGAGGCTCAGCGCTTGATA+AGG + chr8_1:66406660-66406679 Msa1208370:CDS 55.0%
GGAGGCTCAGCGCTTGATAA+GGG + chr8_1:66406661-66406680 Msa1208370:CDS 55.0%
AGCAACCTCAGCTTCCGCAA+TGG - chr8_1:66406855-66406874 None:intergenic 55.0%
! CCAAAGGCACGCCTAGGATA+TGG - chr8_1:66407497-66407516 None:intergenic 55.0%
CCATATCCTAGGCGTGCCTT+TGG + chr8_1:66407494-66407513 Msa1208370:CDS 55.0%
! TCAACACCAAAGGCACGCCT+AGG - chr8_1:66407503-66407522 None:intergenic 55.0%
!! TAGGCGTGCCTTTGGTGTTG+AGG + chr8_1:66407502-66407521 Msa1208370:CDS 55.0%
GCAGAGCTGTCATGAGAGGC+CGG - chr8_1:66405044-66405063 None:intergenic 60.0%
GATGAGTGACAAACGGCGCC+TGG - chr8_1:66405226-66405245 None:intergenic 60.0%
CACTCACGTCCTGCACCATG+TGG - chr8_1:66405661-66405680 None:intergenic 60.0%
! ATGCTGGAGCACCTACGGCA+GGG + chr8_1:66405955-66405974 Msa1208370:CDS 60.0%
GTCTTAGATGGCCCTGCCGT+AGG - chr8_1:66405969-66405988 None:intergenic 60.0%
GCCACAGGTGGACAACATGC+AGG - chr8_1:66406047-66406066 None:intergenic 60.0%
ATCGAGTCCAGCACACTGGC+AGG + chr8_1:66406296-66406315 Msa1208370:CDS 60.0%
TGTTGTGCCTGCCAGTGTGC+TGG - chr8_1:66406306-66406325 None:intergenic 60.0%
!! TGCGGAGGACTGCTGCTTTC+CGG - chr8_1:66406332-66406351 None:intergenic 60.0%
GTGGGGTGGCATGTCTTCAG+TGG + chr8_1:66406481-66406500 Msa1208370:intron 60.0%
GGTGGAATCCCGGAAGGAAG+TGG + chr8_1:66406542-66406561 Msa1208370:CDS 60.0%
! TATGCAAGAGGTGCGGGCTG+AGG - chr8_1:66406620-66406639 None:intergenic 60.0%
GAAGGCCATTGCGGAAGCTG+AGG + chr8_1:66406847-66406866 Msa1208370:CDS 60.0%
AGCTGAGGTTGCTCGCGAAG+AGG + chr8_1:66406862-66406881 Msa1208370:CDS 60.0%
TTAGGAATCGGCGCCCACGA+CGG - chr8_1:66407191-66407210 None:intergenic 60.0%
GGCGGCAGAGCTGTCATGAG+AGG - chr8_1:66405048-66405067 None:intergenic 65.0%
GGCATCCAGACGAGAGGCTG+AGG + chr8_1:66405532-66405551 Msa1208370:CDS 65.0%
! GTTACGGCACCGGGCTGTTC+TGG - chr8_1:66405828-66405847 None:intergenic 65.0%
! GATGCTGGAGCACCTACGGC+AGG + chr8_1:66405954-66405973 Msa1208370:CDS 65.0%
! CAAGAGGTGCGGGCTGAGGA+TGG - chr8_1:66406616-66406635 None:intergenic 65.0%
ATGCCAGATGGCAGCCGTCG+TGG + chr8_1:66407174-66407193 Msa1208370:CDS 65.0%
TGCCAGATGGCAGCCGTCGT+GGG + chr8_1:66407175-66407194 Msa1208370:CDS 65.0%
AGCTCTGCCGCCGTTCCCCA+AGG + chr8_1:66405056-66405075 Msa1208370:intron 70.0%
CGCCCACGACGGCTGCCATC+TGG - chr8_1:66407180-66407199 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 66403580 66407891 66403580 ID=Msa1208370;Name=Msa1208370
chr8_1 mRNA 66403580 66407891 66403580 ID=Msa1208370-mRNA-1;Parent=Msa1208370;Name=Msa1208370-mRNA-1;_AED=0.12;_eAED=0.12;_QI=193|0.9|0.90|1|1|1|11|296|588
chr8_1 exon 66403580 66403856 66403580 ID=Msa1208370-mRNA-1:exon:21853;Parent=Msa1208370-mRNA-1
chr8_1 exon 66404843 66404913 66404843 ID=Msa1208370-mRNA-1:exon:21854;Parent=Msa1208370-mRNA-1
chr8_1 exon 66405058 66405589 66405058 ID=Msa1208370-mRNA-1:exon:21855;Parent=Msa1208370-mRNA-1
chr8_1 exon 66405671 66405754 66405671 ID=Msa1208370-mRNA-1:exon:21856;Parent=Msa1208370-mRNA-1
chr8_1 exon 66405915 66406027 66405915 ID=Msa1208370-mRNA-1:exon:21857;Parent=Msa1208370-mRNA-1
chr8_1 exon 66406148 66406379 66406148 ID=Msa1208370-mRNA-1:exon:21858;Parent=Msa1208370-mRNA-1
chr8_1 exon 66406482 66406691 66406482 ID=Msa1208370-mRNA-1:exon:21859;Parent=Msa1208370-mRNA-1
chr8_1 exon 66406800 66406931 66406800 ID=Msa1208370-mRNA-1:exon:21860;Parent=Msa1208370-mRNA-1
chr8_1 exon 66407084 66407227 66407084 ID=Msa1208370-mRNA-1:exon:21861;Parent=Msa1208370-mRNA-1
chr8_1 exon 66407320 66407376 66407320 ID=Msa1208370-mRNA-1:exon:21862;Parent=Msa1208370-mRNA-1
chr8_1 exon 66407488 66407891 66407488 ID=Msa1208370-mRNA-1:exon:21863;Parent=Msa1208370-mRNA-1
chr8_1 five_prime_UTR 66403580 66403772 66403580 ID=Msa1208370-mRNA-1:five_prime_utr;Parent=Msa1208370-mRNA-1
chr8_1 CDS 66403773 66403856 66403773 ID=Msa1208370-mRNA-1:cds;Parent=Msa1208370-mRNA-1
chr8_1 CDS 66404843 66404913 66404843 ID=Msa1208370-mRNA-1:cds;Parent=Msa1208370-mRNA-1
chr8_1 CDS 66405058 66405589 66405058 ID=Msa1208370-mRNA-1:cds;Parent=Msa1208370-mRNA-1
chr8_1 CDS 66405671 66405754 66405671 ID=Msa1208370-mRNA-1:cds;Parent=Msa1208370-mRNA-1
chr8_1 CDS 66405915 66406027 66405915 ID=Msa1208370-mRNA-1:cds;Parent=Msa1208370-mRNA-1
chr8_1 CDS 66406148 66406379 66406148 ID=Msa1208370-mRNA-1:cds;Parent=Msa1208370-mRNA-1
chr8_1 CDS 66406482 66406691 66406482 ID=Msa1208370-mRNA-1:cds;Parent=Msa1208370-mRNA-1
chr8_1 CDS 66406800 66406931 66406800 ID=Msa1208370-mRNA-1:cds;Parent=Msa1208370-mRNA-1
chr8_1 CDS 66407084 66407227 66407084 ID=Msa1208370-mRNA-1:cds;Parent=Msa1208370-mRNA-1
chr8_1 CDS 66407320 66407376 66407320 ID=Msa1208370-mRNA-1:cds;Parent=Msa1208370-mRNA-1
chr8_1 CDS 66407488 66407595 66407488 ID=Msa1208370-mRNA-1:cds;Parent=Msa1208370-mRNA-1
chr8_1 three_prime_UTR 66407596 66407891 66407596 ID=Msa1208370-mRNA-1:three_prime_utr;Parent=Msa1208370-mRNA-1
Gene Sequence

>Msa1208370

ATGGCGACACCTAATCAAGAGACAATTGACACATTCATCAGCATCACCGGTGTTTCTCAACCAATTGCACTGCAAAAGCTTCAGGAGCATGGTGGTAGTCTTAATGAAGCTGTTAATGCATATTTCAGCGAAGGAGACAGAAATTTGATGGCCAGCTCTGCCGCCGTTCCCCAAGGAGATTTCATGGATATTGATGATCAACATGATGAAATTCTTAGACCTCCATCTCTTTTATCTTTTGCAAGAAATCTCGATCCATTTTCTCTTATTGATCCTACAATTGGGAGAAGTATACTTGATACTCATCTTGGTGCAACAAACCAGGCGCCGTTTGTCACTCATCCAAGAGAGGTAAGGCAAATTCCGATAGAGGATAAGGATGGTAGTCAATCAACTCCTCAAGCTGGCCATATTCCAATAGTTGAAGATGTTACTGGAACTGTTCATGCCCAAGGTCCAGATATACATGGGAGTGTCATAGTACTTGATGATGATGATGATGACAATACTCTGCCTGCTCCGACTAATTCTTCACCTGACAGTAGTGCGAGACCTAGTGCTCCCACATTGGAGAATTTACCAGATAGCAGCAATGACATAGAAGAAGAAATGATTCGCGCAGCCATTGAGGCATCCAGACGAGAGGCTGAGGAAAATTACAGCAATCATGAAGTTGACAGACAAATTGACGTGAGTGAATCTGGGCCTAACCCAAGGCAATCACTTTTAGAGGATCCTGAGCTTGCTCGTGCAGTTTCATTGTCCTTGAAGACAGCAGAGCAAGAAAAAGCACGGCGTGTACAAGAAGGTGATGCTGGAGCACCTACGGCAGGGCCATCTAAGACACAAGGAGTTGACTTAGGGGAAGTATCTTCAAATGGAAGTAAATATGGTCATTGTAGATTGCAGGCAGGAGAAGATGAAGATGAAGATGAAGAAGATGAAGATGTAGAGGAGATGCCTTTGGTTAGGAACAGGTCTACTAGACATGTGTCACTTAGCTCCACAGGGTCAGGCAAAGATGCTGAATTAATCGAGTCCAGCACACTGGCAGGCACAACAGTTCCGGAAAGCAGCAGTCCTCCGCATAATGACAATTCCTTCCCATCTGATGAATGGGGTGGCATGTCTTCAGTGGAACATGATGAAGCAGTAATGCTTGAGGCTGCAATGTTCGGTGGAATCCCGGAAGGAAGTGGTTATCGCCGTGCTTATGCACCACATGAGTTCATGCAGAATAGGGGTTTCCATCCTCAGCCCGCACCTCTTGCATATCACCCTCCTTCACCATCATTGGAGGCTCAGCGCTTGATAAGGGAACAACAGGATGATGAATACCTTGCATCATTAGAAGCAGACAGAGAAAAAGAATTGAAGGCCATTGCGGAAGCTGAGGTTGCTCGCGAAGAGGAAAAACAGAGAGCAGAAGAATCTCAAAGAAAGTTGCAGGAAGAGCAGGAATTGGAAGCACAGTTAGCTGCCAAAGAAGTCTCTCTACCACCAGAACCATCCTCTGATGATGACAGTGCTGTGAATCTGATGGTAAAAATGCCAGATGGCAGCCGTCGTGGGCGCCGATTCCTAAGATCTCATAAGCTCCAGTCTCTTTTCGACTTCATAGATATTGGTAGACAGGTCAAACCAAGCAGTTACAGACTGGTAAGACCATATCCTAGGCGTGCCTTTGGTGTTGAGGAAAGTGCTGTGACATTGGACGAACTTGGCTTAACCAATAAGCAAGAAGCTTTGTTTTTGGAGTTAGTCTGA
Protein sequence

>Msa1208370

MATPNQETIDTFISITGVSQPIALQKLQEHGGSLNEAVNAYFSEGDRNLMASSAAVPQGDFMDIDDQHDEILRPPSLLSFARNLDPFSLIDPTIGRSILDTHLGATNQAPFVTHPREVRQIPIEDKDGSQSTPQAGHIPIVEDVTGTVHAQGPDIHGSVIVLDDDDDDNTLPAPTNSSPDSSARPSAPTLENLPDSSNDIEEEMIRAAIEASRREAEENYSNHEVDRQIDVSESGPNPRQSLLEDPELARAVSLSLKTAEQEKARRVQEGDAGAPTAGPSKTQGVDLGEVSSNGSKYGHCRLQAGEDEDEDEEDEDVEEMPLVRNRSTRHVSLSSTGSGKDAELIESSTLAGTTVPESSSPPHNDNSFPSDEWGGMSSVEHDEAVMLEAAMFGGIPEGSGYRRAYAPHEFMQNRGFHPQPAPLAYHPPSPSLEAQRLIREQQDDEYLASLEADREKELKAIAEAEVAREEEKQRAEESQRKLQEEQELEAQLAAKEVSLPPEPSSDDDSAVNLMVKMPDGSRRGRRFLRSHKLQSLFDFIDIGRQVKPSSYRLVRPYPRRAFGVEESAVTLDELGLTNKQEALFLELV*