AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1021560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021560 MtrunA17_Chr7g0237761 97.973 444 9 0 1 444 1 444 0.0 909
Msa1021560 MtrunA17_Chr1g0169731 75.561 446 102 3 6 444 5 450 0.0 685
Msa1021560 MtrunA17_Chr4g0058051 71.728 382 107 1 64 444 26 407 0.0 580
Msa1021560 MtrunA17_Chr6g0458201 65.803 386 132 0 59 444 19 404 0.0 563
Msa1021560 MtrunA17_Chr3g0116521 70.466 386 114 0 59 444 21 406 0.0 556
Msa1021560 MtrunA17_Chr3g0123321 69.171 386 116 2 59 444 21 403 0.0 531
Msa1021560 MtrunA17_Chr3g0123331 63.377 385 138 3 62 444 23 406 6.50e-177 501
Msa1021560 MtrunA17_Chr1g0210321 62.466 373 137 1 67 436 35 407 9.16e-177 503
Msa1021560 MtrunA17_Chr1g0180381 60.471 382 144 1 66 440 34 415 4.90e-175 498
Msa1021560 MtrunA17_Chr7g0264891 63.564 376 136 1 66 440 35 410 4.17e-174 496
Msa1021560 MtrunA17_Chr4g0060211 55.440 386 163 4 66 444 51 434 4.49e-157 451
Msa1021560 MtrunA17_Chr5g0416061 58.873 355 145 1 91 444 95 449 3.80e-148 429
Msa1021560 MtrunA17_Chr8g0362561 55.801 362 152 2 91 444 94 455 2.48e-145 422
Msa1021560 MtrunA17_Chr2g0288921 56.000 350 150 3 96 444 63 409 8.15e-143 414
Msa1021560 MtrunA17_Chr5g0416041 50.224 446 211 3 10 444 4 449 1.28e-142 415
Msa1021560 MtrunA17_Chr4g0075231 57.429 350 145 3 96 444 39 385 2.88e-142 412
Msa1021560 MtrunA17_Chr6g0452861 56.780 354 152 1 92 444 100 453 1.34e-141 412
Msa1021560 MtrunA17_Chr7g0216581 48.690 458 197 6 9 444 10 451 3.45e-138 404
Msa1021560 MtrunA17_Chr8g0373761 45.070 355 185 7 96 444 42 392 2.54e-100 305
Msa1021560 MtrunA17_Chr8g0373721 44.507 355 187 7 96 444 42 392 2.99e-100 305
Msa1021560 MtrunA17_Chr3g0089181 44.507 355 187 7 96 444 23 373 1.36e-99 302
Msa1021560 MtrunA17_Chr8g0373701 43.662 355 190 7 96 444 97 447 3.74e-96 296
Msa1021560 MtrunA17_Chr8g0373731 45.352 355 184 7 96 444 42 392 4.51e-94 289
Msa1021560 MtrunA17_Chr5g0403481 45.070 355 185 7 96 444 41 391 1.18e-89 277
Msa1021560 MtrunA17_Chr5g0403461 45.070 355 185 7 96 444 41 391 1.18e-89 277
Msa1021560 MtrunA17_Chr5g0403491 45.070 355 185 7 96 444 41 391 1.18e-89 277
Msa1021560 MtrunA17_Chr4g0031851 45.062 324 170 6 121 440 14 333 6.80e-89 275
Msa1021560 MtrunA17_Chr5g0403391 43.662 355 190 7 96 444 41 391 1.08e-87 272
Msa1021560 MtrunA17_Chr5g0414541 42.697 356 192 8 96 444 41 391 1.09e-86 270
Msa1021560 MtrunA17_Chr5g0403411 44.225 355 188 7 96 444 41 391 2.78e-86 269
Msa1021560 MtrunA17_Chr1g0183941 44.981 269 144 3 171 437 1 267 6.58e-75 235
Msa1021560 MtrunA17_Chr3g0113551 71.429 126 36 0 241 366 161 286 4.52e-61 201
Msa1021560 MtrunA17_Chr6g0481851 39.636 275 108 6 129 401 6 224 6.86e-53 177
Msa1021560 MtrunA17_Chr2g0288901 50.641 156 72 3 290 444 5 156 5.12e-46 156
Msa1021560 MtrunA17_Chr2g0288911 58.197 122 50 1 171 291 1 122 3.59e-41 142
Msa1021560 MtrunA17_Chr1g0212931 36.806 288 156 7 113 399 13 275 1.63e-39 144
Msa1021560 MtrunA17_Chr1g0182021 35.540 287 161 4 113 399 62 324 4.18e-37 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021560 AT4G13710.1 75.231 432 97 4 23 444 39 470 0.0 682
Msa1021560 AT4G13710.2 76.123 423 91 4 32 444 29 451 0.0 677
Msa1021560 AT3G24670.1 76.376 436 98 2 11 444 8 440 0.0 668
Msa1021560 AT3G07010.1 81.378 392 73 0 53 444 25 416 0.0 665
Msa1021560 AT1G04680.1 80.977 389 70 1 60 444 41 429 0.0 660
Msa1021560 AT4G13210.2 74.424 434 102 2 12 444 13 438 0.0 641
Msa1021560 AT5G48900.1 81.538 390 72 0 55 444 28 417 0.0 636
Msa1021560 AT3G07010.2 82.880 368 63 0 77 444 16 383 0.0 636
Msa1021560 AT4G13210.1 79.695 394 79 1 52 444 8 401 0.0 630
Msa1021560 AT3G24230.1 65.632 451 141 6 6 444 3 451 0.0 594
Msa1021560 AT1G67750.1 71.916 381 105 1 64 444 30 408 0.0 572
Msa1021560 AT5G63180.1 68.421 399 116 2 48 444 42 432 0.0 570
Msa1021560 AT4G24780.2 71.728 382 107 1 64 444 27 408 0.0 559
Msa1021560 AT4G24780.1 71.728 382 107 1 64 444 27 408 0.0 559
Msa1021560 AT3G27400.2 66.404 381 127 1 64 444 37 416 0.0 531
Msa1021560 AT3G27400.1 66.404 381 127 1 64 444 33 412 0.0 530
Msa1021560 AT3G53190.1 58.042 429 146 4 8 436 20 414 1.69e-172 493
Msa1021560 AT5G04310.3 57.561 410 158 2 42 435 25 434 3.14e-170 486
Msa1021560 AT5G04310.1 57.561 410 158 2 42 435 25 434 7.32e-169 484
Msa1021560 AT5G04310.2 57.561 410 158 2 42 435 25 434 7.32e-169 484
Msa1021560 AT3G54920.1 57.360 394 144 4 62 440 32 416 4.56e-163 469
Msa1021560 AT5G55720.1 55.875 383 157 5 63 444 21 392 2.30e-154 443
Msa1021560 AT1G11920.1 59.714 350 138 3 96 444 37 384 5.53e-154 442
Msa1021560 AT3G01270.1 53.301 409 181 3 46 444 67 475 3.53e-152 441
Msa1021560 AT1G14420.1 55.556 360 154 1 91 444 100 459 3.22e-149 432
Msa1021560 AT5G15110.1 57.465 355 149 2 92 444 118 472 1.44e-148 431
Msa1021560 AT4G22090.1 56.857 350 147 3 96 444 47 393 5.15e-147 424
Msa1021560 AT4G22080.1 56.857 350 147 3 96 444 47 393 1.14e-146 424
Msa1021560 AT2G02720.1 46.916 454 222 5 6 444 6 455 8.85e-142 413
Msa1021560 AT1G30350.1 53.009 349 148 3 96 444 36 368 9.71e-129 377
Msa1021560 AT5G09280.1 48.387 248 125 3 129 375 6 251 3.51e-78 245
Msa1021560 AT3G09540.1 38.408 289 150 7 113 399 61 323 2.37e-42 154
Msa1021560 AT3G55140.1 37.884 293 146 9 113 399 14 276 5.31e-42 152
Msa1021560 AT3G09540.3 38.062 289 147 8 113 399 61 319 9.68e-40 147
Msa1021560 AT3G55140.2 36.719 256 131 7 150 399 22 252 5.47e-35 132
Msa1021560 AT3G09540.2 36.992 246 129 5 113 357 61 281 7.72e-35 131

Find 180 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTGCATACAACCATTT+TGG 0.110425 7_1:+45993321 Msa1021560:CDS
TCTTGTCAACAGTTAGATTT+TGG 0.119998 7_1:+45994350 Msa1021560:three_prime_UTR
CGTAGCTCCCCTTCCCATTT+TGG 0.137331 7_1:+45992920 Msa1021560:CDS
ATGAGAACTGTTGTTGTTAT+TGG 0.149715 7_1:+45994392 Msa1021560:three_prime_UTR
TCTTTGGTTCCAGTCATATT+TGG 0.228663 7_1:+45992978 Msa1021560:CDS
TCATGATCAATTCTTGCTTC+AGG 0.237394 7_1:-45992757 None:intergenic
TGGTCTTGTTGATGCTATTA+TGG 0.249104 7_1:+45993033 Msa1021560:CDS
TTGCATTGTTATAGTAGATT+TGG 0.253485 7_1:+45994272 Msa1021560:three_prime_UTR
CCATTGTCCTCCATCCAAAA+TGG 0.255429 7_1:-45992934 None:intergenic
TAGAAGCCATCTCTCACTTT+TGG 0.262555 7_1:+45994434 Msa1021560:three_prime_UTR
GTTCTTTCCCTTTACTCATT+TGG 0.263710 7_1:-45994145 None:intergenic
GGTGATGGCATTTCCATCTT+TGG 0.269913 7_1:+45992962 Msa1021560:CDS
TATGCTAGAGCCTCAAGTTT+AGG 0.285322 7_1:+45994024 Msa1021560:CDS
AATGATACAGGTTATGCTAT+TGG 0.286003 7_1:+45993257 Msa1021560:intron
TCCCTATTGCCCATTTCATT+TGG 0.293764 7_1:-45994628 None:intergenic
TGGATACAGGGTCCGGAGTA+TGG 0.302482 7_1:+45993917 Msa1021560:CDS
TTCACGGGGTCGTCGTCTCT+TGG 0.302742 7_1:-45992653 None:intergenic
GCTGATTGTGCCATTGGTTT+TGG 0.316248 7_1:+45992581 Msa1021560:CDS
AGAAGAAGATGAGAAGAAAA+TGG 0.320484 7_1:-45988849 None:intergenic
CTAGTTACCTTGGCATCCTT+TGG 0.320663 7_1:-45993356 None:intergenic
TGACGGAGAGTGCCAGGTCT+TGG 0.329790 7_1:-45992677 None:intergenic
CCCTATTGCCCATTTCATTT+GGG 0.336426 7_1:-45994627 None:intergenic
TCGGCTTACAATCATGGATA+TGG 0.339277 7_1:-45992880 None:intergenic
ATGCTAGAGCCTCAAGTTTA+GGG 0.340135 7_1:+45994025 Msa1021560:CDS
TTGTAAGAATGTTACCTCTT+TGG 0.340895 7_1:-45993795 None:intergenic
GGATAAGACCCTCCCCAAAA+TGG 0.344066 7_1:-45993335 None:intergenic
GCCAATGTTCATATTGCCTT+TGG 0.350632 7_1:+45992809 Msa1021560:CDS
TGAATCCCTTGGAAAATTAG+AGG 0.369319 7_1:-45994484 None:intergenic
ACGATTTGTCCCAAATGAAA+TGG 0.374345 7_1:+45994618 Msa1021560:three_prime_UTR
TCCGACTAAAGAAGATGATT+TGG 0.375192 7_1:-45994049 None:intergenic
ATTGGCACCACGACCATCTA+TGG 0.380940 7_1:-45992792 None:intergenic
CATGATCAATTCTTGCTTCA+GGG 0.386947 7_1:-45992756 None:intergenic
AATGTTACCTCTTTGGCAAA+AGG 0.387769 7_1:-45993788 None:intergenic
ATGATACAGGTTATGCTATT+GGG 0.392819 7_1:+45993258 Msa1021560:intron
CCCAAATGAAATGGGCAATA+GGG 0.394384 7_1:+45994627 Msa1021560:three_prime_UTR
GACGGAGAGTGCCAGGTCTT+GGG 0.402712 7_1:-45992676 None:intergenic
TCCCAAATGAAATGGGCAAT+AGG 0.414633 7_1:+45994626 Msa1021560:three_prime_UTR
GGTCTTGTTGATGCTATTAT+GGG 0.421679 7_1:+45993034 Msa1021560:CDS
TCACGGGGTCGTCGTCTCTT+GGG 0.425792 7_1:-45992652 None:intergenic
TTGCCTTGGCTGTTAATTGT+GGG 0.427394 7_1:-45993743 None:intergenic
TCCCAGTCGGCTTACAATCA+TGG 0.429765 7_1:-45992886 None:intergenic
ATAGAAAGACAAAGAAACTA+AGG 0.430405 7_1:-45994528 None:intergenic
GAGTATGGAAGGGTTGGAAT+TGG 0.435726 7_1:+45993932 Msa1021560:CDS
TCAACAACCAAATGAGTAAA+GGG 0.435964 7_1:+45994138 Msa1021560:three_prime_UTR
GGAGAGAAAGAAAAGCATAA+AGG 0.436299 7_1:+45994208 Msa1021560:three_prime_UTR
AGTGCCAGGTCTTGGGTTCA+CGG 0.439411 7_1:-45992669 None:intergenic
AACAGTTTCAAGACCATAGA+TGG 0.441561 7_1:+45992779 Msa1021560:CDS
CACTGGGTGATGTATGCTAT+TGG 0.442502 7_1:+45993707 Msa1021560:CDS
GTTGCCTTGGCTGTTAATTG+TGG 0.451055 7_1:-45993744 None:intergenic
TATAACAATGCAATAATAAG+AGG 0.451336 7_1:-45994262 None:intergenic
CTCAATTTACCTCGTTGTGG+TGG 0.451940 7_1:-45993093 None:intergenic
TATGGAAGGGTTGGAATTGG+AGG 0.453341 7_1:+45993935 Msa1021560:CDS
GTGCCAGGTCTTGGGTTCAC+GGG 0.453527 7_1:-45992668 None:intergenic
GTGACAAAGAGGGTGGATAC+AGG 0.460057 7_1:+45993904 Msa1021560:CDS
ATGTTACCTCTTTGGCAAAA+GGG 0.462229 7_1:-45993787 None:intergenic
GAAAGAAAAGCATAAAGGAA+TGG 0.470361 7_1:+45994213 Msa1021560:three_prime_UTR
ATCAACAACCAAATGAGTAA+AGG 0.470711 7_1:+45994137 Msa1021560:three_prime_UTR
CGATTTGTCCCAAATGAAAT+GGG 0.471016 7_1:+45994619 Msa1021560:three_prime_UTR
ACGGCGTGACGGAGAGTGCC+AGG 0.476026 7_1:-45992683 None:intergenic
AATATGACTGGAACCAAAGA+TGG 0.477110 7_1:-45992975 None:intergenic
GTGGTGGGTGAAGTAGTTAT+TGG 0.479572 7_1:-45993077 None:intergenic
GCTGGCGCTGTGACAAGCTT+TGG 0.480343 7_1:+45992537 Msa1021560:CDS
GGTTGGAATTGGAGGTCTGA+GGG 0.482075 7_1:+45993943 Msa1021560:CDS
CTGGTGTTATTAAATGTCGC+CGG 0.482263 7_1:+45994088 Msa1021560:CDS
ACCATGGAAGCAATCTCCTC+TGG 0.483733 7_1:-45989618 None:intergenic
CGGTTGGCTGATTGTGCCAT+TGG 0.488142 7_1:+45992575 Msa1021560:CDS
ATCCATGATTGTAAGCCGAC+TGG 0.492456 7_1:+45992884 Msa1021560:CDS
GCCGCAGCTCCTCTTCCTGA+TGG 0.492712 7_1:-45993997 None:intergenic
CAGCGCCAGCAGTCATCCAT+TGG 0.493207 7_1:-45992524 None:intergenic
CATTGTCCTCCATCCAAAAT+GGG 0.494585 7_1:-45992933 None:intergenic
TCTCTGTCTAATTGCGCTGA+TGG 0.499109 7_1:+45993013 Msa1021560:CDS
TTAGTCGGAACTTTAACTGC+AGG 0.500265 7_1:+45994063 Msa1021560:CDS
TGGTGTTATTAAATGTCGCC+GGG 0.500739 7_1:+45994089 Msa1021560:CDS
GTAGTTATTGGAAACGGTAA+TGG 0.501809 7_1:-45993065 None:intergenic
TCCAGAGGAGATTGCTTCCA+TGG 0.502756 7_1:+45989617 Msa1021560:CDS
TACAGGGTCCGGAGTATGGA+AGG 0.503644 7_1:+45993921 Msa1021560:CDS
GTGAAGCAACAATGGAGTTA+CGG 0.503946 7_1:+45988918 Msa1021560:exon
GAATGTATTGATCAAATAGT+TGG 0.508802 7_1:+45994649 Msa1021560:three_prime_UTR
AAGAAGCGTGATAGCGAGAA+TGG 0.510985 7_1:-45988963 None:intergenic
CCCAAAATGGTTGTATGCAA+TGG 0.513203 7_1:-45993322 None:intergenic
GGGCAAGGTATCTGTTGCCT+TGG 0.513269 7_1:-45993757 None:intergenic
GAAATCCAATGGATGACTGC+TGG 0.513725 7_1:+45992519 Msa1021560:CDS
GTGATCAATCCAAATATGAC+TGG 0.515085 7_1:-45992987 None:intergenic
TTGTTATAGTAGATTTGGAT+TGG 0.515669 7_1:+45994277 Msa1021560:three_prime_UTR
ATTGGAAACGGTAATGGCGG+TGG 0.517945 7_1:-45993059 None:intergenic
GTCACGCCGTCATTCAAGAT+AGG 0.520035 7_1:+45992696 Msa1021560:CDS
GAATCCCTTGGAAAATTAGA+GGG 0.523122 7_1:-45994483 None:intergenic
CATGATGATAGTGTTGTGAA+TGG 0.528531 7_1:+45989163 Msa1021560:intron
CTTTGGCAAAAGGGTTCTGA+GGG 0.532600 7_1:-45993778 None:intergenic
GCCAAATCATCTTCTTTAGT+CGG 0.537093 7_1:+45994048 Msa1021560:CDS
GTACCGCCGCAGAAAGCGGT+TGG 0.543660 7_1:+45992559 Msa1021560:CDS
AATAGTAATGCATGCTCCAA+AGG 0.544329 7_1:-45992825 None:intergenic
TCTTTGGCAAAAGGGTTCTG+AGG 0.544752 7_1:-45993779 None:intergenic
TCCATGATTGTAAGCCGACT+GGG 0.546175 7_1:+45992885 Msa1021560:CDS
GAGCTTGAATAATTCATCAA+TGG 0.547562 7_1:+45989207 Msa1021560:CDS
AAGAGGGTGGATACAGGGTC+CGG 0.551709 7_1:+45993910 Msa1021560:CDS
GTCGTTATGATCAATAGCAT+TGG 0.551956 7_1:-45988996 None:intergenic
AATGCTATCGGTGGCCGTGA+CGG 0.552465 7_1:+45992608 Msa1021560:CDS
TCAATTTACCTCGTTGTGGT+GGG 0.552926 7_1:-45993092 None:intergenic
TTGGGGAGGGTCTTATCCAA+AGG 0.555778 7_1:+45993340 Msa1021560:CDS
TCCTCCATCCAAAATGGGAA+GGG 0.556374 7_1:-45992928 None:intergenic
TAGAAAGACAAAGAAACTAA+GGG 0.556379 7_1:-45994527 None:intergenic
AGACAAAGAAACTAAGGGGA+AGG 0.557948 7_1:-45994522 None:intergenic
AAAACAGAGTGAAGCAACAA+TGG 0.561784 7_1:+45988910 Msa1021560:exon
GGTCCGGAGTATGGAAGGGT+TGG 0.562652 7_1:+45993926 Msa1021560:CDS
ATCACCAATGTCATCATCCA+TGG 0.564338 7_1:+45992854 Msa1021560:CDS
GTCTTATCCAAAGGATGCCA+AGG 0.567344 7_1:+45993349 Msa1021560:CDS
CTATTGATCATAACGACTCA+AGG 0.567769 7_1:+45989002 Msa1021560:CDS
GGTGAAGTAGTTATTGGAAA+CGG 0.568326 7_1:-45993071 None:intergenic
GGAACTTTAACTGCAGGTGC+TGG 0.568678 7_1:+45994069 Msa1021560:CDS
GACCCCGTGAACCCAAGACC+TGG 0.571184 7_1:+45992665 Msa1021560:CDS
GTCCTCCATCCAAAATGGGA+AGG 0.575724 7_1:-45992929 None:intergenic
CAGCCAACCGCTTTCTGCGG+CGG 0.578877 7_1:-45992562 None:intergenic
TGTATTAACACATGCCACCC+CGG 0.580417 7_1:-45994107 None:intergenic
TACGCAATCACACGGAGAGA+AGG 0.580498 7_1:+45992468 Msa1021560:CDS
AGAGGGGTACACTATTCCAC+AGG 0.581096 7_1:-45994562 None:intergenic
TGCCAGGTCTTGGGTTCACG+GGG 0.582221 7_1:-45992667 None:intergenic
TGACAAAGAGGGTGGATACA+GGG 0.585715 7_1:+45993905 Msa1021560:CDS
GGGTTGGAATTGGAGGTCTG+AGG 0.587913 7_1:+45993942 Msa1021560:CDS
CTATCGGTGGCCGTGACGGA+AGG 0.592368 7_1:+45992612 Msa1021560:CDS
CCTCCATCCAAAATGGGAAG+GGG 0.592528 7_1:-45992927 None:intergenic
CAATGGCCTATCTTGAATGA+CGG 0.593970 7_1:-45992702 None:intergenic
AATCAGCCAACCGCTTTCTG+CGG 0.594304 7_1:-45992565 None:intergenic
TAAACAATGACTATACACAC+TGG 0.595352 7_1:+45993690 Msa1021560:CDS
TAATCTCCAAAAGTGAGAGA+TGG 0.597530 7_1:-45994440 None:intergenic
ATAATTCATCAATGGCGGAA+AGG 0.597934 7_1:+45989215 Msa1021560:CDS
AGTCTCAATTTACCTCGTTG+TGG 0.602217 7_1:-45993096 None:intergenic
ATGTGGGACTGGAAATCCAA+TGG 0.603052 7_1:+45992508 Msa1021560:CDS
CAAAAGGGTTCTGAGGGGCA+AGG 0.604683 7_1:-45993772 None:intergenic
AATCATGGATATGGACACCA+TGG 0.604716 7_1:-45992871 None:intergenic
GACAAAGAAACTAAGGGGAA+GGG 0.605532 7_1:-45994521 None:intergenic
TCCAAAGGCAATATGAACAT+TGG 0.605546 7_1:-45992810 None:intergenic
TGATTTGGCCCCTAAACTTG+AGG 0.605907 7_1:-45994034 None:intergenic
ATTCCAACCCTTCCATACTC+CGG 0.611120 7_1:-45993929 None:intergenic
CTTGAATAATTCATCAATGG+CGG 0.613119 7_1:+45989210 Msa1021560:CDS
TTCAAGACCATAGATGGTCG+TGG 0.615460 7_1:+45992785 Msa1021560:CDS
GTTATTAAATGTCGCCGGGG+TGG 0.616534 7_1:+45994093 Msa1021560:CDS
TATCTTGAATGACGGCGTGA+CGG 0.616846 7_1:-45992694 None:intergenic
AGGACAATGGCTGATGGTGA+TGG 0.620179 7_1:+45992947 Msa1021560:CDS
TTTGGTCGCAATGCTATCGG+TGG 0.622293 7_1:+45992599 Msa1021560:CDS
TCATTCAAGATAGGCCATTG+TGG 0.624115 7_1:+45992705 Msa1021560:CDS
TAAGCCGACTGGGAATGCTA+TGG 0.626089 7_1:+45992895 Msa1021560:CDS
TTTGGTACCGCCGCAGAAAG+CGG 0.627376 7_1:+45992555 Msa1021560:CDS
TCCATCAGGAAGAGGAGCTG+CGG 0.628803 7_1:+45993996 Msa1021560:CDS
TGGGTGATGTATGCTATTGG+AGG 0.631164 7_1:+45993710 Msa1021560:CDS
CAGGACTATACGCAATCACA+CGG 0.632843 7_1:+45992460 Msa1021560:intron
GGATGGAGGACAATGGCTGA+TGG 0.643191 7_1:+45992941 Msa1021560:CDS
AAACAATGACTATACACACT+GGG 0.644998 7_1:+45993691 Msa1021560:CDS
TGCTAGAGCCTCAAGTTTAG+GGG 0.654577 7_1:+45994026 Msa1021560:CDS
CAACGTAGTACCTTCCGTCA+CGG 0.656117 7_1:-45992622 None:intergenic
ACAGGGTCCGGAGTATGGAA+GGG 0.658271 7_1:+45993922 Msa1021560:CDS
GAATTATTACGTATCAACCA+TGG 0.659930 7_1:-45989634 None:intergenic
CTCTTGAACACAATCCACAA+TGG 0.663084 7_1:-45992719 None:intergenic
TGGACAGGTGACAAAGAGGG+TGG 0.664985 7_1:+45993897 Msa1021560:intron
GAACCCACAATTAACAGCCA+AGG 0.665968 7_1:+45993740 Msa1021560:CDS
GAATATTGCAGATGTAGACA+CGG 0.668694 7_1:+45993653 Msa1021560:intron
AGCATTGCGACCAAAACCAA+TGG 0.669104 7_1:-45992591 None:intergenic
ACTGTTGACAAGATAAACAG+TGG 0.669346 7_1:-45994340 None:intergenic
AGAAAGACAAAGAAACTAAG+GGG 0.669765 7_1:-45994526 None:intergenic
GTTATTGGAAACGGTAATGG+CGG 0.672422 7_1:-45993062 None:intergenic
GGTACACTATTCCACAGGGG+AGG 0.673688 7_1:-45994557 None:intergenic
GGCACACATACACAATCGAG+AGG 0.676491 7_1:-45994580 None:intergenic
GACACCATGGATGATGACAT+TGG 0.680615 7_1:-45992858 None:intergenic
GCACACATACACAATCGAGA+GGG 0.683744 7_1:-45994579 None:intergenic
AATATTGCAGATGTAGACAC+GGG 0.684120 7_1:+45993654 Msa1021560:intron
GAGGGGTACACTATTCCACA+GGG 0.684890 7_1:-45994561 None:intergenic
TCTATATGTATCCTCCCCTG+TGG 0.690350 7_1:+45994546 Msa1021560:three_prime_UTR
CTGTTGACAAGATAAACAGT+GGG 0.691709 7_1:-45994339 None:intergenic
ATGTGGACAGGTGACAAAGA+GGG 0.696684 7_1:+45993894 Msa1021560:intron
CACACATACACAATCGAGAG+GGG 0.700555 7_1:-45994578 None:intergenic
CGAACCATAGCATTCCCAGT+CGG 0.703490 7_1:-45992899 None:intergenic
GCATGCAGTTGATAATCCAG+AGG 0.706876 7_1:+45989602 Msa1021560:CDS
GATGTGGACAGGTGACAAAG+AGG 0.712511 7_1:+45993893 Msa1021560:intron
TATAGTCATTGTTTACCACG+TGG 0.716427 7_1:-45993682 None:intergenic
TTTGGCAAAAGGGTTCTGAG+GGG 0.747633 7_1:-45993777 None:intergenic
GGTGTTATTAAATGTCGCCG+GGG 0.749848 7_1:+45994090 Msa1021560:CDS
GATTGTGTTCAAGAGAGACA+TGG 0.751862 7_1:+45992727 Msa1021560:CDS
CTACTTCACCCACCACAACG+AGG 0.767107 7_1:+45993084 Msa1021560:CDS
TAGACACGGGTATTTCCACG+TGG 0.797672 7_1:+45993667 Msa1021560:CDS
AGGGGTACACTATTCCACAG+GGG 0.822508 7_1:-45994560 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAATAATTAAATTAA+AGG - chr7_1:45989670-45989689 None:intergenic 0.0%
!!! TATTTTGTAATGATTAAAAT+CGG + chr7_1:45989300-45989319 Msa1021560:intron 10.0%
!! ATAAATAATTAAATTAAAGG+AGG - chr7_1:45989667-45989686 None:intergenic 10.0%
!! TTATAATTAATGACATTTAT+AGG + chr7_1:45990553-45990572 Msa1021560:intron 10.0%
!! ACAAATAAAAAAAATTGAGT+TGG + chr7_1:45989835-45989854 Msa1021560:intron 15.0%
!!! TTTTTTCATCAAAATTAATC+AGG - chr7_1:45990326-45990345 None:intergenic 15.0%
!! TATTAATTATATAAAACCAG+AGG - chr7_1:45990807-45990826 None:intergenic 15.0%
!! ATCTAAATCTATCAATAAAA+AGG - chr7_1:45991145-45991164 None:intergenic 15.0%
!! TCATATTAAAAAATCAGAAA+AGG - chr7_1:45991343-45991362 None:intergenic 15.0%
!!! TAACTTCTAAAATTTTTAGT+AGG + chr7_1:45991685-45991704 Msa1021560:intron 15.0%
!! AATATATCTAGAAAATGTTA+TGG - chr7_1:45991920-45991939 None:intergenic 15.0%
!!! AACATTTTCTAGATATATTT+TGG + chr7_1:45991921-45991940 Msa1021560:intron 15.0%
!! TAGAAAAAATTGAAATATGA+TGG + chr7_1:45992100-45992119 Msa1021560:intron 15.0%
!!! ATACTTGTTAAATTTTAAAC+AGG + chr7_1:45992441-45992460 Msa1021560:intron 15.0%
!!! TTATTTTTTTTCCTTTTTGA+AGG + chr7_1:45993396-45993415 Msa1021560:intron 15.0%
!!! TTTAGTACTAGTATTTATTT+TGG + chr7_1:45993429-45993448 Msa1021560:intron 15.0%
!!! TTAGTACTAGTATTTATTTT+GGG + chr7_1:45993430-45993449 Msa1021560:intron 15.0%
!! TGATAAACTTTACTAAATAT+TGG + chr7_1:45993863-45993882 Msa1021560:intron 15.0%
!! GAATTAAAAAAGAAAAGAAA+AGG + chr7_1:45994187-45994206 Msa1021560:three_prime_UTR 15.0%
!!! ATTGAGTTGGATTATTTTTT+TGG + chr7_1:45989848-45989867 Msa1021560:intron 20.0%
!!! GTAAACAAGTTTTAAATAGT+AGG + chr7_1:45990065-45990084 Msa1021560:intron 20.0%
!! GATTCACAACAAATTATAAA+TGG - chr7_1:45990194-45990213 None:intergenic 20.0%
!! TAATATATCATTCCAAAAAG+AGG - chr7_1:45990216-45990235 None:intergenic 20.0%
!! CCATAAAAAAAATTTGGAAA+TGG - chr7_1:45990243-45990262 None:intergenic 20.0%
!!! CCATTTCCAAATTTTTTTTA+TGG + chr7_1:45990240-45990259 Msa1021560:intron 20.0%
!! CTTTCACCATAAAAAAAATT+TGG - chr7_1:45990249-45990268 None:intergenic 20.0%
!!! AATTTTTTTTATGGTGAAAG+TGG + chr7_1:45990249-45990268 Msa1021560:intron 20.0%
!!! ATTTTGATGAAAAAATGAGT+TGG + chr7_1:45990331-45990350 Msa1021560:intron 20.0%
!! TTTCAAAATAAATATCACCA+TGG + chr7_1:45990585-45990604 Msa1021560:intron 20.0%
!! AATATAAAGGTCATCAAATA+GGG - chr7_1:45990705-45990724 None:intergenic 20.0%
!!! AAAAGCATCAAAGAATATAA+AGG - chr7_1:45990718-45990737 None:intergenic 20.0%
!!! TTTAAAATGACTCTAGTAAA+AGG - chr7_1:45990763-45990782 None:intergenic 20.0%
!! ACTCAATCTAAACTTAATTA+TGG + chr7_1:45991375-45991394 Msa1021560:intron 20.0%
!!! ATAATTCTAAAAACATCATG+AGG - chr7_1:45991455-45991474 None:intergenic 20.0%
!! GTCTAATCAGAAATTTATAT+GGG - chr7_1:45991510-45991529 None:intergenic 20.0%
!! AGTCTAATCAGAAATTTATA+TGG - chr7_1:45991511-45991530 None:intergenic 20.0%
!! TTATTATTGATGTATGTTGA+GGG - chr7_1:45992216-45992235 None:intergenic 20.0%
!! ATTATTATTGATGTATGTTG+AGG - chr7_1:45992217-45992236 None:intergenic 20.0%
!! AAAATTGTCCCTAAAATTAT+TGG + chr7_1:45992344-45992363 Msa1021560:intron 20.0%
!!! AATTCGTACCAATAATTTTA+GGG - chr7_1:45992355-45992374 None:intergenic 20.0%
!!! TAATTCGTACCAATAATTTT+AGG - chr7_1:45992356-45992375 None:intergenic 20.0%
!! TAAAAAGGTAGTATTAGAAA+AGG - chr7_1:45993172-45993191 None:intergenic 20.0%
!! ATAAATACTAGTACTAAAAC+TGG - chr7_1:45993427-45993446 None:intergenic 20.0%
!! AGAAATAGACAGATAATTTA+TGG - chr7_1:45993610-45993629 None:intergenic 20.0%
!! AAATATTGGAAAATTTGATG+TGG + chr7_1:45993877-45993896 Msa1021560:intron 20.0%
!! TATAACAATGCAATAATAAG+AGG - chr7_1:45994265-45994284 None:intergenic 20.0%
!!! AAAATAAATTTTGAATCCCT+TGG - chr7_1:45994498-45994517 None:intergenic 20.0%
!!! AATCGTGTTTTCTAAATAAA+TGG - chr7_1:45994604-45994623 None:intergenic 20.0%
! TTGTAGTAAAACAGAATCAA+CGG - chr7_1:45989468-45989487 None:intergenic 25.0%
! TCGTTTAGTGATGATTTAAA+CGG + chr7_1:45989515-45989534 Msa1021560:intron 25.0%
!!! TTAAGCTGCATATTTTTATC+CGG + chr7_1:45989742-45989761 Msa1021560:intron 25.0%
! ACAATTAGATGTGCTTAATA+TGG + chr7_1:45990120-45990139 Msa1021560:intron 25.0%
!! TATCAAGGATGCATAAATTT+TGG - chr7_1:45990490-45990509 None:intergenic 25.0%
! TAAATATCACCATGGAAAAA+CGG + chr7_1:45990593-45990612 Msa1021560:intron 25.0%
! ACAATTTCTAACTTTCTTGA+CGG - chr7_1:45990621-45990640 None:intergenic 25.0%
! AAATTGTATGAGTAATTGCA+TGG + chr7_1:45990634-45990653 Msa1021560:intron 25.0%
! AATTGTATGAGTAATTGCAT+GGG + chr7_1:45990635-45990654 Msa1021560:intron 25.0%
! GAATATAAAGGTCATCAAAT+AGG - chr7_1:45990706-45990725 None:intergenic 25.0%
! AGAATAATTTAATTCTCCTC+TGG + chr7_1:45990788-45990807 Msa1021560:intron 25.0%
! GAAATTTATTATGACCGAAA+TGG - chr7_1:45990990-45991009 None:intergenic 25.0%
! AAAGATGTTTGTACTTGTAA+AGG - chr7_1:45991050-45991069 None:intergenic 25.0%
!! AATTATTGGGTCTTTGTTTA+TGG + chr7_1:45991310-45991329 Msa1021560:intron 25.0%
! AAGTTTAGATTGAGTAGAAA+GGG - chr7_1:45991370-45991389 None:intergenic 25.0%
! TAAGTTTAGATTGAGTAGAA+AGG - chr7_1:45991371-45991390 None:intergenic 25.0%
! ATCTAAACTTAATTATGGCT+AGG + chr7_1:45991380-45991399 Msa1021560:intron 25.0%
! TCTAAACTTAATTATGGCTA+GGG + chr7_1:45991381-45991400 Msa1021560:intron 25.0%
!!! TGATGTTTTTAGAATTATGC+TGG + chr7_1:45991457-45991476 Msa1021560:intron 25.0%
! AGGTATAAAAAGACAAACAA+GGG - chr7_1:45991487-45991506 None:intergenic 25.0%
! TAATCAGAAATTTATATGGG+AGG - chr7_1:45991507-45991526 None:intergenic 25.0%
!! GAAGAGTGATTTACTAATTT+TGG - chr7_1:45991599-45991618 None:intergenic 25.0%
!!! TTTTCTAGATATATTTTGGC+TGG + chr7_1:45991925-45991944 Msa1021560:intron 25.0%
! TGGTCATTTAATAAGTTCAT+GGG - chr7_1:45991985-45992004 None:intergenic 25.0%
! TTGGTCATTTAATAAGTTCA+TGG - chr7_1:45991986-45992005 None:intergenic 25.0%
! TTATTAAATGACCAAGATTC+AGG + chr7_1:45991991-45992010 Msa1021560:intron 25.0%
! ATTATTAACTTCCTGAATCT+TGG - chr7_1:45992005-45992024 None:intergenic 25.0%
! TTACTTAAGATAATGAAGGA+GGG - chr7_1:45993124-45993143 None:intergenic 25.0%
!! GTTGTTACTTAAGATAATGA+AGG - chr7_1:45993128-45993147 None:intergenic 25.0%
! AATTGAGTTCAAAATGATAC+AGG + chr7_1:45993245-45993264 Msa1021560:intron 25.0%
! ATGAGAAGTCTACTAAAATT+GGG + chr7_1:45993488-45993507 Msa1021560:intron 25.0%
! TTCTTAGCTAATGAAATATG+TGG + chr7_1:45993826-45993845 Msa1021560:intron 25.0%
!!! TTCTTTTTTTCAGTTTGCTT+GGG - chr7_1:45994170-45994189 None:intergenic 25.0%
!!! ATTCTTTTTTTCAGTTTGCT+TGG - chr7_1:45994171-45994190 None:intergenic 25.0%
! TTGCATTGTTATAGTAGATT+TGG + chr7_1:45994272-45994291 Msa1021560:three_prime_UTR 25.0%
! TTGTTATAGTAGATTTGGAT+TGG + chr7_1:45994277-45994296 Msa1021560:three_prime_UTR 25.0%
! TAGAAAGACAAAGAAACTAA+GGG - chr7_1:45994530-45994549 None:intergenic 25.0%
! ATAGAAAGACAAAGAAACTA+AGG - chr7_1:45994531-45994550 None:intergenic 25.0%
!! GAATGTATTGATCAAATAGT+TGG + chr7_1:45994649-45994668 Msa1021560:three_prime_UTR 25.0%
! TTCTTTCGTTTTCTCTGTTT+TGG - chr7_1:45988892-45988911 None:intergenic 30.0%
GAGCTTGAATAATTCATCAA+TGG + chr7_1:45989207-45989226 Msa1021560:CDS 30.0%
CTTGAATAATTCATCAATGG+CGG + chr7_1:45989210-45989229 Msa1021560:CDS 30.0%
!!! TTTTTTACGAGTGCGATTTA+TGG + chr7_1:45989275-45989294 Msa1021560:intron 30.0%
TGCAGATAATTCTAATCCAA+CGG - chr7_1:45989356-45989375 None:intergenic 30.0%
! TGCATTTTCAGCTTAAGTAA+TGG + chr7_1:45989567-45989586 Msa1021560:intron 30.0%
GAATTATTACGTATCAACCA+TGG - chr7_1:45989637-45989656 None:intergenic 30.0%
! TTTTTATCCGGATTTGAATC+TGG + chr7_1:45989754-45989773 Msa1021560:intron 30.0%
CATTTAATTGATCATGTGCA+TGG + chr7_1:45989911-45989930 Msa1021560:intron 30.0%
! GTATTTTCTTCCTCTGTTTT+TGG + chr7_1:45989948-45989967 Msa1021560:intron 30.0%
AATACAAACTAAAGCCAAGT+GGG - chr7_1:45990041-45990060 None:intergenic 30.0%
AAATACAAACTAAAGCCAAG+TGG - chr7_1:45990042-45990061 None:intergenic 30.0%
!! TTTGTTGTGAATCCTCTTTT+TGG + chr7_1:45990201-45990220 Msa1021560:intron 30.0%
ATTTATGCATCCTTGATACA+AGG + chr7_1:45990492-45990511 Msa1021560:intron 30.0%
! TTTTAAATACTACTGCAGTC+TGG - chr7_1:45990680-45990699 None:intergenic 30.0%
AGCTGGCAAATAAAATATTC+TGG - chr7_1:45990938-45990957 None:intergenic 30.0%
TTTATTATGACCGAAATGGT+CGG - chr7_1:45990986-45991005 None:intergenic 30.0%
! GTAAAGGCAATTTTCAGATA+AGG - chr7_1:45991034-45991053 None:intergenic 30.0%
! AGTCATGAAGATTGGATTTT+AGG - chr7_1:45991084-45991103 None:intergenic 30.0%
CCACTATACAAGAAATGAAA+GGG - chr7_1:45991199-45991218 None:intergenic 30.0%
ACCACTATACAAGAAATGAA+AGG - chr7_1:45991200-45991219 None:intergenic 30.0%
CTAAACTTAATTATGGCTAG+GGG + chr7_1:45991382-45991401 Msa1021560:intron 30.0%
GAGGTATAAAAAGACAAACA+AGG - chr7_1:45991488-45991507 None:intergenic 30.0%
CATAAATCTTACACGTTACA+GGG + chr7_1:45991553-45991572 Msa1021560:intron 30.0%
! TTGTGTGTTACTGATTACTT+TGG + chr7_1:45991720-45991739 Msa1021560:intron 30.0%
! TGTGTGTTACTGATTACTTT+GGG + chr7_1:45991721-45991740 Msa1021560:intron 30.0%
GTCATTTAATAAGTTCATGG+GGG - chr7_1:45991983-45992002 None:intergenic 30.0%
GGTCATTTAATAAGTTCATG+GGG - chr7_1:45991984-45992003 None:intergenic 30.0%
TACAATAAATGCCAAGTTAG+GGG - chr7_1:45992079-45992098 None:intergenic 30.0%
CTACAATAAATGCCAAGTTA+GGG - chr7_1:45992080-45992099 None:intergenic 30.0%
ACTACAATAAATGCCAAGTT+AGG - chr7_1:45992081-45992100 None:intergenic 30.0%
ATAGAATGATACGGTGTATA+CGG - chr7_1:45992147-45992166 None:intergenic 30.0%
!! ATTCAGTCCTTTAAGACAAA+CGG + chr7_1:45992288-45992307 Msa1021560:intron 30.0%
AAATTACCCGTTTGTCTTAA+AGG - chr7_1:45992298-45992317 None:intergenic 30.0%
GTTACTTAAGATAATGAAGG+AGG - chr7_1:45993125-45993144 None:intergenic 30.0%
AATGATACAGGTTATGCTAT+TGG + chr7_1:45993257-45993276 Msa1021560:intron 30.0%
ATGATACAGGTTATGCTATT+GGG + chr7_1:45993258-45993277 Msa1021560:intron 30.0%
CATGAGAAGTCTACTAAAAT+TGG + chr7_1:45993487-45993506 Msa1021560:intron 30.0%
! TCTATTTCTTGCACTAACAA+TGG + chr7_1:45993621-45993640 Msa1021560:intron 30.0%
TAAACAATGACTATACACAC+TGG + chr7_1:45993690-45993709 Msa1021560:CDS 30.0%
AAACAATGACTATACACACT+GGG + chr7_1:45993691-45993710 Msa1021560:CDS 30.0%
TTGTAAGAATGTTACCTCTT+TGG - chr7_1:45993798-45993817 None:intergenic 30.0%
AAAAAGCTCCATTTAGCAAA+AGG - chr7_1:45993972-45993991 None:intergenic 30.0%
ATCAACAACCAAATGAGTAA+AGG + chr7_1:45994137-45994156 Msa1021560:three_prime_UTR 30.0%
TCAACAACCAAATGAGTAAA+GGG + chr7_1:45994138-45994157 Msa1021560:three_prime_UTR 30.0%
! GAAAGAAAAGCATAAAGGAA+TGG + chr7_1:45994213-45994232 Msa1021560:three_prime_UTR 30.0%
! TCTTGTCAACAGTTAGATTT+TGG + chr7_1:45994350-45994369 Msa1021560:three_prime_UTR 30.0%
! CTTGTCAACAGTTAGATTTT+GGG + chr7_1:45994351-45994370 Msa1021560:three_prime_UTR 30.0%
! ATGAGAACTGTTGTTGTTAT+TGG + chr7_1:45994392-45994411 Msa1021560:three_prime_UTR 30.0%
! ATTTCCCTCTAATTTTCCAA+GGG + chr7_1:45994479-45994498 Msa1021560:three_prime_UTR 30.0%
AGAAAGACAAAGAAACTAAG+GGG - chr7_1:45994529-45994548 None:intergenic 30.0%
AAAACAGAGTGAAGCAACAA+TGG + chr7_1:45988910-45988929 Msa1021560:exon 35.0%
GTCGTTATGATCAATAGCAT+TGG - chr7_1:45988999-45989018 None:intergenic 35.0%
CTATTGATCATAACGACTCA+AGG + chr7_1:45989002-45989021 Msa1021560:CDS 35.0%
! CATGATGATAGTGTTGTGAA+TGG + chr7_1:45989163-45989182 Msa1021560:intron 35.0%
! ATAATTCATCAATGGCGGAA+AGG + chr7_1:45989215-45989234 Msa1021560:CDS 35.0%
! ATAAAGGTGTAGATAACCGT+TGG + chr7_1:45989337-45989356 Msa1021560:intron 35.0%
TCGACATTGTCTGATGAAAT+AGG - chr7_1:45989717-45989736 None:intergenic 35.0%
TAACGTTCCAGATTCAAATC+CGG - chr7_1:45989764-45989783 None:intergenic 35.0%
TTCTCAAAAGCCAAAAACAG+AGG - chr7_1:45989961-45989980 None:intergenic 35.0%
!!! TGTTTTTGGCTTTTGAGAAG+AGG + chr7_1:45989962-45989981 Msa1021560:intron 35.0%
CATATCTGATCCTTGTATCA+AGG - chr7_1:45990505-45990524 None:intergenic 35.0%
TACTGCAGTCTGGTAATAAA+TGG - chr7_1:45990670-45990689 None:intergenic 35.0%
! GATTGATTCATTAAGCACCA+TGG - chr7_1:45990876-45990895 None:intergenic 35.0%
GTGATTGAAGTCATGAAGAT+TGG - chr7_1:45991092-45991111 None:intergenic 35.0%
CCCTTTCATTTCTTGTATAG+TGG + chr7_1:45991196-45991215 Msa1021560:intron 35.0%
TACTTTCTCCTATGTTTCTC+TGG + chr7_1:45991261-45991280 Msa1021560:intron 35.0%
TTCGTAAACCAGAGAAACAT+AGG - chr7_1:45991272-45991291 None:intergenic 35.0%
CCTGTAACGTGTAAGATTTA+TGG - chr7_1:45991555-45991574 None:intergenic 35.0%
CCATAAATCTTACACGTTAC+AGG + chr7_1:45991552-45991571 Msa1021560:intron 35.0%
ATCACTCTTCAGTAGTCAAA+AGG + chr7_1:45991609-45991628 Msa1021560:intron 35.0%
TCACTCTTCAGTAGTCAAAA+GGG + chr7_1:45991610-45991629 Msa1021560:intron 35.0%
!!! ACTCTGTTTTTGGTTCTTTC+AGG - chr7_1:45991762-45991781 None:intergenic 35.0%
! GGGTTTATGAACTCTGTTTT+TGG - chr7_1:45991772-45991791 None:intergenic 35.0%
GTTCATAAACCCAGACTATT+AGG + chr7_1:45991780-45991799 Msa1021560:intron 35.0%
GCATGAATTCCTAATAGTCT+GGG - chr7_1:45991792-45991811 None:intergenic 35.0%
TGCATGAATTCCTAATAGTC+TGG - chr7_1:45991793-45991812 None:intergenic 35.0%
AGGATACGGATAGAATGATA+CGG - chr7_1:45992156-45992175 None:intergenic 35.0%
TGGGTCAACAATTAAGGATA+CGG - chr7_1:45992170-45992189 None:intergenic 35.0%
!! TTCAGTCCTTTAAGACAAAC+GGG + chr7_1:45992289-45992308 Msa1021560:intron 35.0%
!!! AGTCTGAGTTTTTTCTCATG+TGG + chr7_1:45992491-45992510 Msa1021560:CDS 35.0%
!!! GTCTGAGTTTTTTCTCATGT+GGG + chr7_1:45992492-45992511 Msa1021560:CDS 35.0%
CATGATCAATTCTTGCTTCA+GGG - chr7_1:45992759-45992778 None:intergenic 35.0%
TCATGATCAATTCTTGCTTC+AGG - chr7_1:45992760-45992779 None:intergenic 35.0%
AACAGTTTCAAGACCATAGA+TGG + chr7_1:45992779-45992798 Msa1021560:CDS 35.0%
TCCAAAGGCAATATGAACAT+TGG - chr7_1:45992813-45992832 None:intergenic 35.0%
AATAGTAATGCATGCTCCAA+AGG - chr7_1:45992828-45992847 None:intergenic 35.0%
AATATGACTGGAACCAAAGA+TGG - chr7_1:45992978-45992997 None:intergenic 35.0%
! TCTTTGGTTCCAGTCATATT+TGG + chr7_1:45992978-45992997 Msa1021560:CDS 35.0%
GTGATCAATCCAAATATGAC+TGG - chr7_1:45992990-45993009 None:intergenic 35.0%
!! TGGTCTTGTTGATGCTATTA+TGG + chr7_1:45993033-45993052 Msa1021560:CDS 35.0%
!! GGTCTTGTTGATGCTATTAT+GGG + chr7_1:45993034-45993053 Msa1021560:CDS 35.0%
GTAGTTATTGGAAACGGTAA+TGG - chr7_1:45993068-45993087 None:intergenic 35.0%
GGTGAAGTAGTTATTGGAAA+CGG - chr7_1:45993074-45993093 None:intergenic 35.0%
! ACCATTGCATACAACCATTT+TGG + chr7_1:45993321-45993340 Msa1021560:CDS 35.0%
! CCATTGCATACAACCATTTT+GGG + chr7_1:45993322-45993341 Msa1021560:CDS 35.0%
! CATTGCATACAACCATTTTG+GGG + chr7_1:45993323-45993342 Msa1021560:CDS 35.0%
AATGTTACTGCTAGTTACCT+TGG - chr7_1:45993369-45993388 None:intergenic 35.0%
ACTTCTCATGTCAAATAGAG+AGG - chr7_1:45993477-45993496 None:intergenic 35.0%
ATGACAACTAGACCTCTTTA+TGG + chr7_1:45993516-45993535 Msa1021560:intron 35.0%
! AACACTCTTTAGAAGAACAG+AGG - chr7_1:45993573-45993592 None:intergenic 35.0%
GAATATTGCAGATGTAGACA+CGG + chr7_1:45993653-45993672 Msa1021560:intron 35.0%
AATATTGCAGATGTAGACAC+GGG + chr7_1:45993654-45993673 Msa1021560:intron 35.0%
TATAGTCATTGTTTACCACG+TGG - chr7_1:45993685-45993704 None:intergenic 35.0%
ATGTTACCTCTTTGGCAAAA+GGG - chr7_1:45993790-45993809 None:intergenic 35.0%
AATGTTACCTCTTTGGCAAA+AGG - chr7_1:45993791-45993810 None:intergenic 35.0%
TTGGAAAATTTGATGTGGAC+AGG + chr7_1:45993882-45993901 Msa1021560:intron 35.0%
GCCAAATCATCTTCTTTAGT+CGG + chr7_1:45994048-45994067 Msa1021560:CDS 35.0%
TCCGACTAAAGAAGATGATT+TGG - chr7_1:45994052-45994071 None:intergenic 35.0%
GTTCTTTCCCTTTACTCATT+TGG - chr7_1:45994148-45994167 None:intergenic 35.0%
! GGAGAGAAAGAAAAGCATAA+AGG + chr7_1:45994208-45994227 Msa1021560:three_prime_UTR 35.0%
CTGTTGACAAGATAAACAGT+GGG - chr7_1:45994342-45994361 None:intergenic 35.0%
ACTGTTGACAAGATAAACAG+TGG - chr7_1:45994343-45994362 None:intergenic 35.0%
TAATCTCCAAAAGTGAGAGA+TGG - chr7_1:45994443-45994462 None:intergenic 35.0%
!! CTCTCACTTTTGGAGATTAT+TGG + chr7_1:45994444-45994463 Msa1021560:three_prime_UTR 35.0%
! GATTTCCCTCTAATTTTCCA+AGG + chr7_1:45994478-45994497 Msa1021560:three_prime_UTR 35.0%
GAATCCCTTGGAAAATTAGA+GGG - chr7_1:45994486-45994505 None:intergenic 35.0%
TGAATCCCTTGGAAAATTAG+AGG - chr7_1:45994487-45994506 None:intergenic 35.0%
ACGATTTGTCCCAAATGAAA+TGG + chr7_1:45994618-45994637 Msa1021560:three_prime_UTR 35.0%
CGATTTGTCCCAAATGAAAT+GGG + chr7_1:45994619-45994638 Msa1021560:three_prime_UTR 35.0%
!!! TTTTGGTGTCGTGTGAGAAA+AGG - chr7_1:45988875-45988894 None:intergenic 40.0%
GTGAAGCAACAATGGAGTTA+CGG + chr7_1:45988918-45988937 Msa1021560:exon 40.0%
CAAACAGTACTATTTGCCGT+CGG + chr7_1:45989417-45989436 Msa1021560:intron 40.0%
GCTTAATATGGTCCCATTAG+CGG + chr7_1:45990132-45990151 Msa1021560:intron 40.0%
GTATGAGTAATTGCATGGGT+AGG + chr7_1:45990639-45990658 Msa1021560:intron 40.0%
GCAGTCTGGTAATAAATGGT+GGG - chr7_1:45990666-45990685 None:intergenic 40.0%
TGCAGTCTGGTAATAAATGG+TGG - chr7_1:45990667-45990686 None:intergenic 40.0%
GATTCATTAAGCACCATGGA+AGG - chr7_1:45990872-45990891 None:intergenic 40.0%
ATCGCCATGTTCTTTGCATA+TGG + chr7_1:45990893-45990912 Msa1021560:intron 40.0%
TCGCCATGTTCTTTGCATAT+GGG + chr7_1:45990894-45990913 Msa1021560:intron 40.0%
GATCCCATATGCAAAGAACA+TGG - chr7_1:45990900-45990919 None:intergenic 40.0%
ACATTAGCATGTGGTTAAGC+TGG - chr7_1:45990955-45990974 None:intergenic 40.0%
GATCTCAGAACATTAGCATG+TGG - chr7_1:45990964-45990983 None:intergenic 40.0%
CCAAGACATGTGTTTAAGAG+GGG - chr7_1:45991223-45991242 None:intergenic 40.0%
GCCAAGACATGTGTTTAAGA+GGG - chr7_1:45991224-45991243 None:intergenic 40.0%
CTCTTAAACACATGTCTTGG+CGG + chr7_1:45991223-45991242 Msa1021560:intron 40.0%
GGGACACATTTCAGTATTCA+GGG + chr7_1:45991402-45991421 Msa1021560:intron 40.0%
ACAAAGGTAGCACATTCATG+TGG - chr7_1:45991853-45991872 None:intergenic 40.0%
ACAGGCTGTAGAAACTACAA+AGG - chr7_1:45991869-45991888 None:intergenic 40.0%
!!! TTAGGGGAGATCTAGTTTTG+GGG - chr7_1:45992063-45992082 None:intergenic 40.0%
!!! GTTAGGGGAGATCTAGTTTT+GGG - chr7_1:45992064-45992083 None:intergenic 40.0%
!! AGTTAGGGGAGATCTAGTTT+TGG - chr7_1:45992065-45992084 None:intergenic 40.0%
AAACTAGATCTCCCCTAACT+TGG + chr7_1:45992065-45992084 Msa1021560:intron 40.0%
GTCATGTGGGTCAACAATTA+AGG - chr7_1:45992176-45992195 None:intergenic 40.0%
!!! AGTTTTTTCTCATGTGGGAC+TGG + chr7_1:45992497-45992516 Msa1021560:CDS 40.0%
CAATGGCCTATCTTGAATGA+CGG - chr7_1:45992705-45992724 None:intergenic 40.0%
TCATTCAAGATAGGCCATTG+TGG + chr7_1:45992705-45992724 Msa1021560:CDS 40.0%
CTCTTGAACACAATCCACAA+TGG - chr7_1:45992722-45992741 None:intergenic 40.0%
GATTGTGTTCAAGAGAGACA+TGG + chr7_1:45992727-45992746 Msa1021560:CDS 40.0%
GCCAATGTTCATATTGCCTT+TGG + chr7_1:45992809-45992828 Msa1021560:CDS 40.0%
ATCACCAATGTCATCATCCA+TGG + chr7_1:45992854-45992873 Msa1021560:CDS 40.0%
AATCATGGATATGGACACCA+TGG - chr7_1:45992874-45992893 None:intergenic 40.0%
TCGGCTTACAATCATGGATA+TGG - chr7_1:45992883-45992902 None:intergenic 40.0%
CATTGTCCTCCATCCAAAAT+GGG - chr7_1:45992936-45992955 None:intergenic 40.0%
! GTTATTGGAAACGGTAATGG+CGG - chr7_1:45993065-45993084 None:intergenic 40.0%
TCAATTTACCTCGTTGTGGT+GGG - chr7_1:45993095-45993114 None:intergenic 40.0%
AGTCTCAATTTACCTCGTTG+TGG - chr7_1:45993099-45993118 None:intergenic 40.0%
CCCAAAATGGTTGTATGCAA+TGG - chr7_1:45993325-45993344 None:intergenic 40.0%
AGTTGGAATGGACCATAAAG+AGG - chr7_1:45993531-45993550 None:intergenic 40.0%
TTGCCTTGGCTGTTAATTGT+GGG - chr7_1:45993746-45993765 None:intergenic 40.0%
! TTTTTCACTCCATCAGGAAG+AGG + chr7_1:45993988-45994007 Msa1021560:CDS 40.0%
TATGCTAGAGCCTCAAGTTT+AGG + chr7_1:45994024-45994043 Msa1021560:CDS 40.0%
ATGCTAGAGCCTCAAGTTTA+GGG + chr7_1:45994025-45994044 Msa1021560:CDS 40.0%
TTAGTCGGAACTTTAACTGC+AGG + chr7_1:45994063-45994082 Msa1021560:CDS 40.0%
!! CTGGTGTTATTAAATGTCGC+CGG + chr7_1:45994088-45994107 Msa1021560:CDS 40.0%
!! TGGTGTTATTAAATGTCGCC+GGG + chr7_1:45994089-45994108 Msa1021560:CDS 40.0%
! TAGAAGCCATCTCTCACTTT+TGG + chr7_1:45994434-45994453 Msa1021560:three_prime_UTR 40.0%
GACAAAGAAACTAAGGGGAA+GGG - chr7_1:45994524-45994543 None:intergenic 40.0%
AGACAAAGAAACTAAGGGGA+AGG - chr7_1:45994525-45994544 None:intergenic 40.0%
TCCCAAATGAAATGGGCAAT+AGG + chr7_1:45994626-45994645 Msa1021560:three_prime_UTR 40.0%
CCCTATTGCCCATTTCATTT+GGG - chr7_1:45994630-45994649 None:intergenic 40.0%
CCCAAATGAAATGGGCAATA+GGG + chr7_1:45994627-45994646 Msa1021560:three_prime_UTR 40.0%
TCCCTATTGCCCATTTCATT+TGG - chr7_1:45994631-45994650 None:intergenic 40.0%
! AAGAAGCGTGATAGCGAGAA+TGG - chr7_1:45988966-45988985 None:intergenic 45.0%
TTAAAATCGGAGCGTACACG+TGG + chr7_1:45989313-45989332 Msa1021560:intron 45.0%
!! GCATGCAGTTGATAATCCAG+AGG + chr7_1:45989602-45989621 Msa1021560:CDS 45.0%
ACCACAATGCAACCGCTAAT+GGG - chr7_1:45990147-45990166 None:intergenic 45.0%
TCAGGCAAACACAAGAACAG+TGG - chr7_1:45990308-45990327 None:intergenic 45.0%
!! CGTTCTGAAGTTTCCTTCCA+TGG + chr7_1:45990856-45990875 Msa1021560:intron 45.0%
!! GTTCTGAGATCCGACCATTT+CGG + chr7_1:45990973-45990992 Msa1021560:intron 45.0%
CCCCTCTTAAACACATGTCT+TGG + chr7_1:45991220-45991239 Msa1021560:intron 45.0%
CGCCAAGACATGTGTTTAAG+AGG - chr7_1:45991225-45991244 None:intergenic 45.0%
GGGGACACATTTCAGTATTC+AGG + chr7_1:45991401-45991420 Msa1021560:intron 45.0%
GATGCATTGTGCTTGTAGAC+AGG - chr7_1:45991887-45991906 None:intergenic 45.0%
CTACAAGCACAATGCATCTC+TGG + chr7_1:45991889-45991908 Msa1021560:intron 45.0%
!!! GAGATCTAGTTTTGGGGTGT+CGG - chr7_1:45992057-45992076 None:intergenic 45.0%
GTATACGGAATAACGAGGGT+TGG - chr7_1:45992132-45992151 None:intergenic 45.0%
CGGTGTATACGGAATAACGA+GGG - chr7_1:45992136-45992155 None:intergenic 45.0%
ACGGTGTATACGGAATAACG+AGG - chr7_1:45992137-45992156 None:intergenic 45.0%
TGTATGTTGAGGGATGAGAC+TGG - chr7_1:45992206-45992225 None:intergenic 45.0%
CAGGACTATACGCAATCACA+CGG + chr7_1:45992460-45992479 Msa1021560:intron 45.0%
ATGTGGGACTGGAAATCCAA+TGG + chr7_1:45992508-45992527 Msa1021560:CDS 45.0%
GAAATCCAATGGATGACTGC+TGG + chr7_1:45992519-45992538 Msa1021560:CDS 45.0%
!!! GCTGATTGTGCCATTGGTTT+TGG + chr7_1:45992581-45992600 Msa1021560:CDS 45.0%
AGCATTGCGACCAAAACCAA+TGG - chr7_1:45992594-45992613 None:intergenic 45.0%
!! GGTTTTGGTCGCAATGCTAT+CGG + chr7_1:45992596-45992615 Msa1021560:CDS 45.0%
TATCTTGAATGACGGCGTGA+CGG - chr7_1:45992697-45992716 None:intergenic 45.0%
TTCAAGACCATAGATGGTCG+TGG + chr7_1:45992785-45992804 Msa1021560:CDS 45.0%
GACACCATGGATGATGACAT+TGG - chr7_1:45992861-45992880 None:intergenic 45.0%
ATCCATGATTGTAAGCCGAC+TGG + chr7_1:45992884-45992903 Msa1021560:CDS 45.0%
TCCATGATTGTAAGCCGACT+GGG + chr7_1:45992885-45992904 Msa1021560:CDS 45.0%
TCCTCCATCCAAAATGGGAA+GGG - chr7_1:45992931-45992950 None:intergenic 45.0%
CCATTGTCCTCCATCCAAAA+TGG - chr7_1:45992937-45992956 None:intergenic 45.0%
! CCATTTTGGATGGAGGACAA+TGG + chr7_1:45992934-45992953 Msa1021560:CDS 45.0%
! GGTGATGGCATTTCCATCTT+TGG + chr7_1:45992962-45992981 Msa1021560:CDS 45.0%
TCTCTGTCTAATTGCGCTGA+TGG + chr7_1:45993013-45993032 Msa1021560:CDS 45.0%
!! GTGGTGGGTGAAGTAGTTAT+TGG - chr7_1:45993080-45993099 None:intergenic 45.0%
CTCAATTTACCTCGTTGTGG+TGG - chr7_1:45993096-45993115 None:intergenic 45.0%
!! TGCATACAACCATTTTGGGG+AGG + chr7_1:45993326-45993345 Msa1021560:CDS 45.0%
!! GCATACAACCATTTTGGGGA+GGG + chr7_1:45993327-45993346 Msa1021560:CDS 45.0%
GTCTTATCCAAAGGATGCCA+AGG + chr7_1:45993349-45993368 Msa1021560:CDS 45.0%
CTAGTTACCTTGGCATCCTT+TGG - chr7_1:45993359-45993378 None:intergenic 45.0%
AACTGGACGCTCCTTCAAAA+AGG - chr7_1:45993410-45993429 None:intergenic 45.0%
CAAATAGAGAGGCTCAGCTT+AGG - chr7_1:45993466-45993485 None:intergenic 45.0%
GAGACACTAGGAAGTTGGAA+TGG - chr7_1:45993543-45993562 None:intergenic 45.0%
CAACTTCCTAGTGTCTCAGA+GGG + chr7_1:45993546-45993565 Msa1021560:intron 45.0%
CACTGGGTGATGTATGCTAT+TGG + chr7_1:45993707-45993726 Msa1021560:CDS 45.0%
TGGGTGATGTATGCTATTGG+AGG + chr7_1:45993710-45993729 Msa1021560:CDS 45.0%
GAACCCACAATTAACAGCCA+AGG + chr7_1:45993740-45993759 Msa1021560:CDS 45.0%
GTTGCCTTGGCTGTTAATTG+TGG - chr7_1:45993747-45993766 None:intergenic 45.0%
!! TTTGGCAAAAGGGTTCTGAG+GGG - chr7_1:45993780-45993799 None:intergenic 45.0%
! CTTTGGCAAAAGGGTTCTGA+GGG - chr7_1:45993781-45993800 None:intergenic 45.0%
TCTTTGGCAAAAGGGTTCTG+AGG - chr7_1:45993782-45993801 None:intergenic 45.0%
! TCAGAACCCTTTTGCCAAAG+AGG + chr7_1:45993781-45993800 Msa1021560:CDS 45.0%
ATGTGGACAGGTGACAAAGA+GGG + chr7_1:45993894-45993913 Msa1021560:intron 45.0%
TGACAAAGAGGGTGGATACA+GGG + chr7_1:45993905-45993924 Msa1021560:CDS 45.0%
ATTCCAACCCTTCCATACTC+CGG - chr7_1:45993932-45993951 None:intergenic 45.0%
GAGTATGGAAGGGTTGGAAT+TGG + chr7_1:45993932-45993951 Msa1021560:CDS 45.0%
TATGGAAGGGTTGGAATTGG+AGG + chr7_1:45993935-45993954 Msa1021560:CDS 45.0%
! GAGGGAGACCTTTTGCTAAA+TGG + chr7_1:45993961-45993980 Msa1021560:CDS 45.0%
!!! GGAGCTTTTTTCACTCCATC+AGG + chr7_1:45993982-45994001 Msa1021560:CDS 45.0%
TGCTAGAGCCTCAAGTTTAG+GGG + chr7_1:45994026-45994045 Msa1021560:CDS 45.0%
! TGATTTGGCCCCTAAACTTG+AGG - chr7_1:45994037-45994056 None:intergenic 45.0%
!! GGTGTTATTAAATGTCGCCG+GGG + chr7_1:45994090-45994109 Msa1021560:CDS 45.0%
TGTATTAACACATGCCACCC+CGG - chr7_1:45994110-45994129 None:intergenic 45.0%
TCTATATGTATCCTCCCCTG+TGG + chr7_1:45994546-45994565 Msa1021560:three_prime_UTR 45.0%
CACACATACACAATCGAGAG+GGG - chr7_1:45994581-45994600 None:intergenic 45.0%
GCACACATACACAATCGAGA+GGG - chr7_1:45994582-45994601 None:intergenic 45.0%
!!! TAATTATAATTTTAATGAAA+TGG - chr7_1:45990542-45990561 None:intergenic 5.0%
!! ATACAATAAATTATAATTAT+TGG + chr7_1:45991296-45991315 Msa1021560:intron 5.0%
!! TACAATAAATTATAATTATT+GGG + chr7_1:45991297-45991316 Msa1021560:intron 5.0%
!! TGATATAAAATTAATTAAAA+AGG - chr7_1:45993187-45993206 None:intergenic 5.0%
CTATTTGCCGTCGGTCAGAT+CGG + chr7_1:45989426-45989445 Msa1021560:intron 50.0%
TTCAGATCCGATCTGACCGA+CGG - chr7_1:45989436-45989455 None:intergenic 50.0%
TCCAGAGGAGATTGCTTCCA+TGG + chr7_1:45989617-45989636 Msa1021560:CDS 50.0%
ACCATGGAAGCAATCTCCTC+TGG - chr7_1:45989621-45989640 None:intergenic 50.0%
TCCCATTAGCGGTTGCATTG+TGG + chr7_1:45990143-45990162 Msa1021560:intron 50.0%
GACCACAATGCAACCGCTAA+TGG - chr7_1:45990148-45990167 None:intergenic 50.0%
!!! TTGACGGTGCCGTTTTTCCA+TGG - chr7_1:45990605-45990624 None:intergenic 50.0%
CACATGTCTTGGCGGAGATT+TGG + chr7_1:45991231-45991250 Msa1021560:intron 50.0%
CTGTCCTACATCACCCAACA+AGG + chr7_1:45991818-45991837 Msa1021560:intron 50.0%
TCCTACATCACCCAACAAGG+TGG + chr7_1:45991821-45991840 Msa1021560:intron 50.0%
CCTACATCACCCAACAAGGT+GGG + chr7_1:45991822-45991841 Msa1021560:intron 50.0%
CTACATCACCCAACAAGGTG+GGG + chr7_1:45991823-45991842 Msa1021560:intron 50.0%
!!! ATCTAGTTTTGGGGTGTCGG+TGG - chr7_1:45992054-45992073 None:intergenic 50.0%
TGTTGAGGGATGAGACTGGT+GGG - chr7_1:45992202-45992221 None:intergenic 50.0%
ATGTTGAGGGATGAGACTGG+TGG - chr7_1:45992203-45992222 None:intergenic 50.0%
TACGCAATCACACGGAGAGA+AGG + chr7_1:45992468-45992487 Msa1021560:CDS 50.0%
AATCAGCCAACCGCTTTCTG+CGG - chr7_1:45992568-45992587 None:intergenic 50.0%
TTTGGTCGCAATGCTATCGG+TGG + chr7_1:45992599-45992618 Msa1021560:CDS 50.0%
CAACGTAGTACCTTCCGTCA+CGG - chr7_1:45992625-45992644 None:intergenic 50.0%
GTCACGCCGTCATTCAAGAT+AGG + chr7_1:45992696-45992715 Msa1021560:CDS 50.0%
ATTGGCACCACGACCATCTA+TGG - chr7_1:45992795-45992814 None:intergenic 50.0%
! TCCCAGTCGGCTTACAATCA+TGG - chr7_1:45992889-45992908 None:intergenic 50.0%
TAAGCCGACTGGGAATGCTA+TGG + chr7_1:45992895-45992914 Msa1021560:CDS 50.0%
CGAACCATAGCATTCCCAGT+CGG - chr7_1:45992902-45992921 None:intergenic 50.0%
CCTCCATCCAAAATGGGAAG+GGG - chr7_1:45992930-45992949 None:intergenic 50.0%
GTCCTCCATCCAAAATGGGA+AGG - chr7_1:45992932-45992951 None:intergenic 50.0%
! AGGACAATGGCTGATGGTGA+TGG + chr7_1:45992947-45992966 Msa1021560:CDS 50.0%
! ATTGGAAACGGTAATGGCGG+TGG - chr7_1:45993062-45993081 None:intergenic 50.0%
GGATAAGACCCTCCCCAAAA+TGG - chr7_1:45993338-45993357 None:intergenic 50.0%
! TTGGGGAGGGTCTTATCCAA+AGG + chr7_1:45993340-45993359 Msa1021560:CDS 50.0%
!! CCTCTGAGACACTAGGAAGT+TGG - chr7_1:45993548-45993567 None:intergenic 50.0%
CCAACTTCCTAGTGTCTCAG+AGG + chr7_1:45993545-45993564 Msa1021560:intron 50.0%
TAGACACGGGTATTTCCACG+TGG + chr7_1:45993667-45993686 Msa1021560:CDS 50.0%
GATGTGGACAGGTGACAAAG+AGG + chr7_1:45993893-45993912 Msa1021560:intron 50.0%
GTGACAAAGAGGGTGGATAC+AGG + chr7_1:45993904-45993923 Msa1021560:CDS 50.0%
GGTTGGAATTGGAGGTCTGA+GGG + chr7_1:45993943-45993962 Msa1021560:CDS 50.0%
GGAACTTTAACTGCAGGTGC+TGG + chr7_1:45994069-45994088 Msa1021560:CDS 50.0%
GTTATTAAATGTCGCCGGGG+TGG + chr7_1:45994093-45994112 Msa1021560:CDS 50.0%
! AGGGGTACACTATTCCACAG+GGG - chr7_1:45994563-45994582 None:intergenic 50.0%
! GAGGGGTACACTATTCCACA+GGG - chr7_1:45994564-45994583 None:intergenic 50.0%
! AGAGGGGTACACTATTCCAC+AGG - chr7_1:45994565-45994584 None:intergenic 50.0%
GGCACACATACACAATCGAG+AGG - chr7_1:45994583-45994602 None:intergenic 50.0%
GGAGCGTACACGTGGCATAA+AGG + chr7_1:45989321-45989340 Msa1021560:intron 55.0%
TCAGCACAGTCTGACCCACT+TGG + chr7_1:45990024-45990043 Msa1021560:intron 55.0%
CCCACCTTGTTGGGTGATGT+AGG - chr7_1:45991825-45991844 None:intergenic 55.0%
GTGGCTTACCCCACCTTGTT+GGG - chr7_1:45991834-45991853 None:intergenic 55.0%
TGTGGCTTACCCCACCTTGT+TGG - chr7_1:45991835-45991854 None:intergenic 55.0%
TTTGGTACCGCCGCAGAAAG+CGG + chr7_1:45992555-45992574 Msa1021560:CDS 55.0%
! CGGTTGGCTGATTGTGCCAT+TGG + chr7_1:45992575-45992594 Msa1021560:CDS 55.0%
AATGCTATCGGTGGCCGTGA+CGG + chr7_1:45992608-45992627 Msa1021560:CDS 55.0%
AGTGCCAGGTCTTGGGTTCA+CGG - chr7_1:45992672-45992691 None:intergenic 55.0%
! CGTAGCTCCCCTTCCCATTT+TGG + chr7_1:45992920-45992939 Msa1021560:CDS 55.0%
! GCTCCCCTTCCCATTTTGGA+TGG + chr7_1:45992924-45992943 Msa1021560:CDS 55.0%
! CCCCTTCCCATTTTGGATGG+AGG + chr7_1:45992927-45992946 Msa1021560:CDS 55.0%
GGATGGAGGACAATGGCTGA+TGG + chr7_1:45992941-45992960 Msa1021560:CDS 55.0%
CTACTTCACCCACCACAACG+AGG + chr7_1:45993084-45993103 Msa1021560:CDS 55.0%
!! AGAGGTCCCTCTGAGACACT+AGG - chr7_1:45993555-45993574 None:intergenic 55.0%
! GGGCAAGGTATCTGTTGCCT+TGG - chr7_1:45993760-45993779 None:intergenic 55.0%
!! CAAAAGGGTTCTGAGGGGCA+AGG - chr7_1:45993775-45993794 None:intergenic 55.0%
TGGACAGGTGACAAAGAGGG+TGG + chr7_1:45993897-45993916 Msa1021560:intron 55.0%
AAGAGGGTGGATACAGGGTC+CGG + chr7_1:45993910-45993929 Msa1021560:CDS 55.0%
TGGATACAGGGTCCGGAGTA+TGG + chr7_1:45993917-45993936 Msa1021560:CDS 55.0%
TACAGGGTCCGGAGTATGGA+AGG + chr7_1:45993921-45993940 Msa1021560:CDS 55.0%
ACAGGGTCCGGAGTATGGAA+GGG + chr7_1:45993922-45993941 Msa1021560:CDS 55.0%
GGGTTGGAATTGGAGGTCTG+AGG + chr7_1:45993942-45993961 Msa1021560:CDS 55.0%
TCCATCAGGAAGAGGAGCTG+CGG + chr7_1:45993996-45994015 Msa1021560:CDS 55.0%
GGTACACTATTCCACAGGGG+AGG - chr7_1:45994560-45994579 None:intergenic 55.0%
! GACTGGTGGGTCGGTCATGT+GGG - chr7_1:45992189-45992208 None:intergenic 60.0%
! AGACTGGTGGGTCGGTCATG+TGG - chr7_1:45992190-45992209 None:intergenic 60.0%
! GAGGGATGAGACTGGTGGGT+CGG - chr7_1:45992198-45992217 None:intergenic 60.0%
CAGCGCCAGCAGTCATCCAT+TGG - chr7_1:45992527-45992546 None:intergenic 60.0%
GCTGGCGCTGTGACAAGCTT+TGG + chr7_1:45992537-45992556 Msa1021560:CDS 60.0%
TCACGGGGTCGTCGTCTCTT+GGG - chr7_1:45992655-45992674 None:intergenic 60.0%
TTCACGGGGTCGTCGTCTCT+TGG - chr7_1:45992656-45992675 None:intergenic 60.0%
TGCCAGGTCTTGGGTTCACG+GGG - chr7_1:45992670-45992689 None:intergenic 60.0%
GTGCCAGGTCTTGGGTTCAC+GGG - chr7_1:45992671-45992690 None:intergenic 60.0%
!! GACGGAGAGTGCCAGGTCTT+GGG - chr7_1:45992679-45992698 None:intergenic 60.0%
!! TGACGGAGAGTGCCAGGTCT+TGG - chr7_1:45992680-45992699 None:intergenic 60.0%
GGTCCGGAGTATGGAAGGGT+TGG + chr7_1:45993926-45993945 Msa1021560:CDS 60.0%
GTACCGCCGCAGAAAGCGGT+TGG + chr7_1:45992559-45992578 Msa1021560:CDS 65.0%
CAGCCAACCGCTTTCTGCGG+CGG - chr7_1:45992565-45992584 None:intergenic 65.0%
! CTATCGGTGGCCGTGACGGA+AGG + chr7_1:45992612-45992631 Msa1021560:CDS 65.0%
GACCCCGTGAACCCAAGACC+TGG + chr7_1:45992665-45992684 Msa1021560:CDS 65.0%
GCCGCAGCTCCTCTTCCTGA+TGG - chr7_1:45994000-45994019 None:intergenic 65.0%
!! ACGGCGTGACGGAGAGTGCC+AGG - chr7_1:45992686-45992705 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 45988851 45994683 45988851 ID=Msa1021560;Name=Msa1021560
chr7_1 mRNA 45988851 45994683 45988851 ID=Msa1021560-mRNA-1;Parent=Msa1021560;Name=Msa1021560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=78|1|1|1|1|1|7|558|444
chr7_1 exon 45988851 45989023 45988851 ID=Msa1021560-mRNA-1:exon:9126;Parent=Msa1021560-mRNA-1
chr7_1 exon 45989174 45989236 45989174 ID=Msa1021560-mRNA-1:exon:9127;Parent=Msa1021560-mRNA-1
chr7_1 exon 45989578 45989646 45989578 ID=Msa1021560-mRNA-1:exon:9128;Parent=Msa1021560-mRNA-1
chr7_1 exon 45992463 45993105 45992463 ID=Msa1021560-mRNA-1:exon:9129;Parent=Msa1021560-mRNA-1
chr7_1 exon 45993267 45993370 45993267 ID=Msa1021560-mRNA-1:exon:9130;Parent=Msa1021560-mRNA-1
chr7_1 exon 45993664 45993802 45993664 ID=Msa1021560-mRNA-1:exon:9131;Parent=Msa1021560-mRNA-1
chr7_1 exon 45993904 45994683 45993904 ID=Msa1021560-mRNA-1:exon:9132;Parent=Msa1021560-mRNA-1
chr7_1 five_prime_UTR 45988851 45988928 45988851 ID=Msa1021560-mRNA-1:five_prime_utr;Parent=Msa1021560-mRNA-1
chr7_1 CDS 45988929 45989023 45988929 ID=Msa1021560-mRNA-1:cds;Parent=Msa1021560-mRNA-1
chr7_1 CDS 45989174 45989236 45989174 ID=Msa1021560-mRNA-1:cds;Parent=Msa1021560-mRNA-1
chr7_1 CDS 45989578 45989646 45989578 ID=Msa1021560-mRNA-1:cds;Parent=Msa1021560-mRNA-1
chr7_1 CDS 45992463 45993105 45992463 ID=Msa1021560-mRNA-1:cds;Parent=Msa1021560-mRNA-1
chr7_1 CDS 45993267 45993370 45993267 ID=Msa1021560-mRNA-1:cds;Parent=Msa1021560-mRNA-1
chr7_1 CDS 45993664 45993802 45993664 ID=Msa1021560-mRNA-1:cds;Parent=Msa1021560-mRNA-1
chr7_1 CDS 45993904 45994125 45993904 ID=Msa1021560-mRNA-1:cds;Parent=Msa1021560-mRNA-1
chr7_1 three_prime_UTR 45994126 45994683 45994126 ID=Msa1021560-mRNA-1:three_prime_utr;Parent=Msa1021560-mRNA-1
Gene Sequence

>Msa1021560

ATGGAGTTACGGTTTTCATCACAGTTCGTTTTCACCATTCTCGCTATCACGCTTCTTTTTGCTTTCACCAATGCTATTGATCATAACGACTCAAGTGTTGTGAATGGAGAAGAGAAGTTGAAGATGCAGAGCTTGAATAATTCATCAATGGCGGAAAGCTTAAGTAATGGTGCTATCAACGAGCATGCAGTTGATAATCCAGAGGAGATTGCTTCCATGGTTGATACGACTATACGCAATCACACGGAGAGAAGGAGTCTGAGTTTTTTCTCATGTGGGACTGGAAATCCAATGGATGACTGCTGGCGCTGTGACAAGCTTTGGTACCGCCGCAGAAAGCGGTTGGCTGATTGTGCCATTGGTTTTGGTCGCAATGCTATCGGTGGCCGTGACGGAAGGTACTACGTTGTGAATAACCCAAGAGACGACGACCCCGTGAACCCAAGACCTGGCACTCTCCGTCACGCCGTCATTCAAGATAGGCCATTGTGGATTGTGTTCAAGAGAGACATGGTGATCACCCTGAAGCAAGAATTGATCATGAACAGTTTCAAGACCATAGATGGTCGTGGTGCCAATGTTCATATTGCCTTTGGAGCATGCATTACTATTCAATTTATCACCAATGTCATCATCCATGGTGTCCATATCCATGATTGTAAGCCGACTGGGAATGCTATGGTTCGTAGCTCCCCTTCCCATTTTGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATCTTTGGTTCCAGTCATATTTGGATTGATCACAACTCTCTGTCTAATTGCGCTGATGGTCTTGTTGATGCTATTATGGGATCCACCGCCATTACCGTTTCCAATAACTACTTCACCCACCACAACGAGGTTATGCTATTGGGTCACAGTGACTCATATGTACGTGACAAGCAGATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGTCTTATCCAAAGGATGCCAAGATGTAGACACGGGTATTTCCACGTGGTAAACAATGACTATACACACTGGGTGATGTATGCTATTGGAGGCAGTGCTGAACCCACAATTAACAGCCAAGGCAACAGATACCTTGCCCCTCAGAACCCTTTTGCCAAAGAGGTGACAAAGAGGGTGGATACAGGGTCCGGAGTATGGAAGGGTTGGAATTGGAGGTCTGAGGGAGACCTTTTGCTAAATGGAGCTTTTTTCACTCCATCAGGAAGAGGAGCTGCGGCAAGCTATGCTAGAGCCTCAAGTTTAGGGGCCAAATCATCTTCTTTAGTCGGAACTTTAACTGCAGGTGCTGGTGTTATTAAATGTCGCCGGGGTGGCATGTGTTAA
Protein sequence

>Msa1021560

MELRFSSQFVFTILAITLLFAFTNAIDHNDSSVVNGEEKLKMQSLNNSSMAESLSNGAINEHAVDNPEEIASMVDTTIRNHTERRSLSFFSCGTGNPMDDCWRCDKLWYRRRKRLADCAIGFGRNAIGGRDGRYYVVNNPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGACITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHFGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSAEPTINSQGNRYLAPQNPFAKEVTKRVDTGSGVWKGWNWRSEGDLLLNGAFFTPSGRGAAASYARASSLGAKSSSLVGTLTAGAGVIKCRRGGMC*