AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0837680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837680 MtrunA17_Chr5g0406741 97.892 427 9 0 1 427 1 427 0.0 872
Msa0837680 MtrunA17_Chr8g0370671 71.991 432 108 5 4 427 5 431 0.0 623
Msa0837680 MtrunA17_Chr7g0255771 46.763 278 137 3 155 424 182 456 4.29e-84 265
Msa0837680 MtrunA17_Chr5g0441371 46.494 271 142 3 155 423 148 417 1.19e-78 249
Msa0837680 MtrunA17_Chr8g0357001 47.679 237 118 2 144 380 464 694 4.96e-64 218
Msa0837680 MtrunA17_Chr1g0148681 34.521 365 208 8 85 419 47 410 2.78e-60 201
Msa0837680 MtrunA17_Chr3g0138431 39.394 297 168 6 132 419 174 467 4.93e-57 194
Msa0837680 MtrunA17_Chr3g0125051 37.847 288 161 8 145 420 216 497 1.98e-56 194
Msa0837680 MtrunA17_Chr2g0332171 41.975 243 132 5 146 380 195 436 6.88e-53 184
Msa0837680 MtrunA17_Chr3g0125041 36.429 280 167 6 156 425 228 506 1.67e-51 181
Msa0837680 MtrunA17_Chr2g0332181 37.413 286 167 5 137 411 129 413 1.29e-50 176
Msa0837680 MtrunA17_Chr1g0152871 36.398 261 156 4 165 415 84 344 7.48e-48 167
Msa0837680 MtrunA17_Chr3g0134401 34.263 251 158 3 172 415 74 324 1.70e-43 155
Msa0837680 MtrunA17_Chr3g0102851 39.648 227 126 5 170 389 30 252 4.41e-42 150
Msa0837680 MtrunA17_Chr3g0134411 33.984 256 160 4 169 415 88 343 3.22e-41 150
Msa0837680 MtrunA17_Chr3g0134421 34.387 253 157 4 172 415 84 336 1.88e-39 145
Msa0837680 MtrunA17_Chr3g0134441 35.246 244 139 5 170 399 62 300 2.38e-39 144
Msa0837680 MtrunA17_Chr3g0103471 36.726 226 132 5 170 388 20 241 8.03e-37 135
Msa0837680 MtrunA17_Chr3g0102861 36.283 226 133 5 170 388 20 241 1.11e-35 132
Msa0837680 MtrunA17_Chr3g0102621 35.193 233 140 5 163 388 19 247 6.32e-35 130
Msa0837680 MtrunA17_Chr3g0134431 32.203 236 138 5 176 406 13 231 9.85e-29 113
Msa0837680 MtrunA17_Chr6g0462981 34.363 259 146 9 171 422 45 286 3.43e-28 113
Msa0837680 MtrunA17_Chr3g0102631 38.286 175 101 3 222 389 1 175 5.23e-28 110
Msa0837680 MtrunA17_Chr3g0102651 38.286 175 101 3 222 389 1 175 5.23e-28 110
Msa0837680 MtrunA17_Chr3g0102661 38.286 175 101 3 222 389 1 175 5.23e-28 110
Msa0837680 MtrunA17_Chr3g0102671 38.286 175 101 3 222 389 1 175 5.23e-28 110
Msa0837680 MtrunA17_Chr6g0462911 31.325 249 156 6 171 415 45 282 5.48e-27 110
Msa0837680 MtrunA17_Chr5g0398791 34.302 172 108 2 171 338 2 172 2.66e-24 99.0
Msa0837680 MtrunA17_Chr5g0418901 46.914 81 43 0 226 306 7 87 4.34e-20 84.7
Msa0837680 MtrunA17_Chr1g0161581 32.979 188 111 3 174 355 336 514 2.33e-16 81.3
Msa0837680 MtrunA17_Chr2g0277271 49.123 57 29 0 209 265 33 89 3.48e-12 62.4
Msa0837680 MtrunA17_Chr3g0134781 28.571 119 82 1 199 314 61 179 8.67e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0837680 AT1G20610.1 59.701 402 154 5 26 424 33 429 1.34e-170 485
Msa0837680 AT1G76310.1 59.382 421 149 9 17 424 19 430 4.16e-169 481
Msa0837680 AT1G76310.3 55.679 449 149 10 17 424 19 458 1.67e-162 466
Msa0837680 AT2G17620.1 57.968 433 153 9 6 424 6 423 2.99e-160 459
Msa0837680 AT4G35620.1 59.048 420 138 10 22 426 27 427 4.26e-150 433
Msa0837680 AT1G76310.2 57.937 378 137 9 17 381 19 387 6.89e-144 416
Msa0837680 AT4G35620.2 59.091 374 120 9 22 381 27 381 2.15e-130 381
Msa0837680 AT1G76310.4 56.740 319 116 9 17 322 19 328 8.39e-112 332
Msa0837680 AT3G11520.1 38.987 395 214 8 51 426 26 412 3.45e-86 269
Msa0837680 AT1G20590.1 69.364 173 53 0 230 402 63 235 4.99e-86 263
Msa0837680 AT5G06150.1 36.643 423 224 8 27 424 30 433 4.35e-85 267
Msa0837680 AT2G26760.1 46.183 262 138 3 151 410 109 369 1.70e-78 248
Msa0837680 AT1G16330.1 44.444 279 153 1 141 419 366 642 5.88e-78 254
Msa0837680 AT4G37490.1 44.718 284 150 4 147 424 140 422 9.31e-76 243
Msa0837680 AT3G11520.2 39.429 350 185 8 51 381 26 367 2.68e-75 240
Msa0837680 AT1G77390.1 39.405 269 155 4 155 416 162 429 2.33e-59 200
Msa0837680 AT5G25380.3 35.638 376 220 10 51 415 59 423 3.01e-58 197
Msa0837680 AT5G25380.1 35.638 376 220 10 51 415 59 423 3.01e-58 197
Msa0837680 AT5G25380.4 34.921 378 226 9 51 415 59 429 1.13e-57 196
Msa0837680 AT5G25380.2 35.580 371 217 10 51 410 59 418 4.00e-57 194
Msa0837680 AT5G11300.1 39.759 332 183 9 100 416 94 423 1.21e-56 193
Msa0837680 AT5G43080.2 37.548 261 160 3 157 415 73 332 3.50e-55 187
Msa0837680 AT5G06150.2 36.585 328 162 9 27 329 30 336 8.89e-55 185
Msa0837680 AT1G44110.1 37.050 278 167 4 146 416 169 445 1.45e-54 188
Msa0837680 AT1G47210.2 39.552 268 152 5 157 415 88 354 1.18e-53 183
Msa0837680 AT5G43080.1 36.842 266 160 4 157 415 73 337 4.96e-53 181
Msa0837680 AT1G15570.1 39.700 267 153 4 156 415 173 438 6.61e-53 183
Msa0837680 AT1G80370.1 39.700 267 153 4 156 415 182 447 7.15e-53 184
Msa0837680 AT5G11300.2 42.105 285 148 9 100 369 94 376 3.93e-52 180
Msa0837680 AT1G47220.1 39.925 268 151 5 157 415 42 308 6.75e-52 177
Msa0837680 AT1G47230.1 36.154 260 157 4 165 415 88 347 7.88e-48 168
Msa0837680 AT1G47230.2 36.015 261 157 5 165 415 88 348 3.84e-46 163
Msa0837680 AT1G34460.2 31.987 297 155 6 27 319 142 395 2.33e-37 142
Msa0837680 AT1G34460.4 31.987 297 155 6 27 319 142 395 2.33e-37 142
Msa0837680 AT1G34460.9 30.982 326 167 9 9 319 102 384 5.38e-37 141
Msa0837680 AT1G34460.6 31.667 300 155 7 27 319 142 398 8.80e-37 140
Msa0837680 AT1G34460.3 31.667 300 155 7 27 319 142 398 8.80e-37 140
Msa0837680 AT1G34460.8 31.667 300 155 7 27 319 142 398 8.80e-37 140
Msa0837680 AT1G34460.1 31.667 300 155 7 27 319 142 398 8.80e-37 140
Msa0837680 AT1G34460.5 31.667 300 155 7 27 319 142 398 1.10e-36 140
Msa0837680 AT1G34460.7 31.667 300 155 7 27 319 142 398 1.30e-36 140
Msa0837680 AT1G14750.1 33.696 184 119 2 203 383 385 568 7.49e-21 95.5
Msa0837680 AT1G14750.3 33.696 184 119 2 203 383 385 568 8.11e-21 95.5
Msa0837680 AT1G47210.1 44.762 105 54 3 157 258 88 191 1.20e-20 89.7
Msa0837680 AT1G14750.2 33.696 184 119 2 203 383 217 400 1.54e-20 93.6
Msa0837680 AT1G14750.4 33.696 184 118 3 203 383 217 399 2.25e-19 90.1

Find 106 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAATTAACTTTCATAAA+TGG 0.119270 5_4:-11721495 Msa0837680:three_prime_UTR
CAGAGAATGCTCTAGTTTAA+TGG 0.170801 5_4:-11721677 Msa0837680:CDS
TTTCATGCCCTTATTCTTCT+AGG 0.183351 5_4:-11725184 Msa0837680:five_prime_UTR
CCATTTCCAGAACTTCTTTC+CGG 0.210345 5_4:+11722795 None:intergenic
TTTCATGAGAAGGTTCTTAA+AGG 0.288446 5_4:-11722457 Msa0837680:CDS
GGGTGTGATTAATCAGAATT+TGG 0.301953 5_4:-11724886 Msa0837680:CDS
TGGAAGATCCTAGAAGAATA+AGG 0.304988 5_4:+11725176 None:intergenic
AAATCAAGTTCAAATGGATT+TGG 0.319295 5_4:-11724136 Msa0837680:CDS
AACAATTAACTTTCATAAAT+GGG 0.326556 5_4:-11721494 Msa0837680:three_prime_UTR
TGGTTTAGTGGCAATGCTTT+TGG 0.341737 5_4:-11722888 Msa0837680:CDS
GTTCCCATTGAACATAATAA+TGG 0.345729 5_4:-11721310 Msa0837680:three_prime_UTR
CTGTGTTTCACCAAACTATA+TGG 0.349277 5_4:-11723269 Msa0837680:CDS
CATTTCCAGAACTTCTTTCC+GGG 0.354928 5_4:+11722796 None:intergenic
ATTTCCATTATTATGTTCAA+TGG 0.354955 5_4:+11721306 None:intergenic
GCTGGGACAGGGAAACTTAC+AGG 0.367597 5_4:-11721637 Msa0837680:CDS
GCTTCAGTTGGTTGGTTTAG+TGG 0.367934 5_4:-11722900 Msa0837680:CDS
TGAAAGGATGAGGGCTATAC+TGG 0.375569 5_4:-11723227 Msa0837680:CDS
TTCTCCAGAAGAAAACTTGC+TGG 0.385990 5_4:+11721562 None:intergenic
TATCAAACCTTCAAAATTTG+TGG 0.395715 5_4:+11725070 None:intergenic
ATGGGAATTTACTAATACTA+AGG 0.400084 5_4:-11721434 Msa0837680:three_prime_UTR
AGTTGAGATGGAGGATATCA+TGG 0.409043 5_4:-11723817 Msa0837680:CDS
TTGGCAAAATCAAGTTCAAA+TGG 0.410685 5_4:-11724142 Msa0837680:CDS
TGCTCTAAAGCCATTGGCAC+TGG 0.419967 5_4:+11724067 None:intergenic
GCAAGAGGGTCATTTGCATC+AGG 0.421294 5_4:+11723768 None:intergenic
TAAGCAACTTGGGTTGCAAT+GGG 0.430023 5_4:-11721458 Msa0837680:three_prime_UTR
GGGGTGTCAATGTCCATAAC+AGG 0.441867 5_4:+11723789 None:intergenic
TCTGTTTGCTCTAAAGCCAT+TGG 0.446717 5_4:+11724061 None:intergenic
TTTCCATTATTATGTTCAAT+GGG 0.449092 5_4:+11721307 None:intergenic
CTAGTGATGGGTCGATGAAC+CGG 0.449551 5_4:+11724674 None:intergenic
TGAGAAGAAACAAGCGGATC+CGG 0.456269 5_4:-11724693 Msa0837680:CDS
CTTATAGGAGGAAGTTGAGA+TGG 0.464867 5_4:-11723829 Msa0837680:intron
TTGTTAACAACACAAGGATA+AGG 0.465065 5_4:+11724849 None:intergenic
AATTGCTGTGCCATATAGTT+TGG 0.468094 5_4:+11723259 None:intergenic
TATCATGGAAGAGCCTGTTA+TGG 0.468278 5_4:-11723802 Msa0837680:CDS
TCTGGAGAACGAGTTGTAGC+TGG 0.469456 5_4:-11721548 Msa0837680:exon
GGGTTAGATTCTAGAAAGGT+TGG 0.473549 5_4:-11724927 Msa0837680:CDS
GGAAGATCCTAGAAGAATAA+GGG 0.475724 5_4:+11725177 None:intergenic
ATCAAACCTTCAAAATTTGT+GGG 0.477220 5_4:+11725071 None:intergenic
TTGACATTAATGAAAGGATG+AGG 0.477955 5_4:-11723237 Msa0837680:CDS
GGCACTGGCTGATCCTCCAC+TGG 0.480548 5_4:+11724082 None:intergenic
GAGTTGATCTTCAGAGTAGT+TGG 0.480770 5_4:+11722149 None:intergenic
GTTGACTTTCACAAGAAGGC+TGG 0.486106 5_4:-11721655 Msa0837680:CDS
TTTCACAAGAAGGCTGGGAC+AGG 0.486235 5_4:-11721649 Msa0837680:CDS
AACTTGGGTTGCAATGGGGA+TGG 0.488491 5_4:-11721453 Msa0837680:three_prime_UTR
ACAGCTCAATGCACTATGTA+TGG 0.490108 5_4:-11722207 Msa0837680:CDS
GCATGAAAATGAAGATCCTA+TGG 0.490188 5_4:+11725199 None:intergenic
TGTTAACAACACAAGGATAA+GGG 0.491661 5_4:+11724850 None:intergenic
AAGAATGTTGTAAGCAACTT+GGG 0.494197 5_4:-11721468 Msa0837680:three_prime_UTR
CCGGAAAGAAGTTCTGGAAA+TGG 0.494858 5_4:-11722795 Msa0837680:intron
GGGCAAAACAGAAGAGCATT+GGG 0.497902 5_4:-11724906 Msa0837680:CDS
AGGAGGGTTAGATTCTAGAA+AGG 0.500876 5_4:-11724931 Msa0837680:CDS
GGTTAGATTCTAGAAAGGTT+GGG 0.502394 5_4:-11724926 Msa0837680:CDS
TAAGAATGTTGTAAGCAACT+TGG 0.502923 5_4:-11721469 Msa0837680:three_prime_UTR
ATACACCCGGAAAGAAGTTC+TGG 0.504153 5_4:-11722801 Msa0837680:CDS
ACTTGGGTTGCAATGGGGAT+GGG 0.504185 5_4:-11721452 Msa0837680:three_prime_UTR
TCACTGTTTCTCTCTTCCAT+AGG 0.508299 5_4:-11725215 Msa0837680:five_prime_UTR
ACTGGTTGACTGGCTTATTG+AGG 0.508362 5_4:-11723209 Msa0837680:intron
TGGGCAAAACAGAAGAGCAT+TGG 0.511695 5_4:-11724907 Msa0837680:CDS
AACTACCAAAAGGTCAAACT+TGG 0.515338 5_4:-11724161 Msa0837680:CDS
AGAAAGAAGCTTCAGTTGGT+TGG 0.515982 5_4:-11722908 Msa0837680:CDS
AATCAGAATTTGGTTGTGGA+AGG 0.518311 5_4:-11724876 Msa0837680:CDS
TGATCTGATTCACTATGCAT+TGG 0.523177 5_4:+11724037 None:intergenic
AATGGTTGACTTTCACAAGA+AGG 0.528684 5_4:-11721659 Msa0837680:CDS
ATCAAATCCTCACCTAGTGA+TGG 0.532515 5_4:+11724661 None:intergenic
GCAGCGGCAGCTAGTTGAGA+AGG 0.533466 5_4:+11722237 None:intergenic
ATAGGAGGAAGTTGAGATGG+AGG 0.543444 5_4:-11723826 Msa0837680:intron
CGGTTCATCGACCCATCACT+AGG 0.545956 5_4:-11724673 Msa0837680:intron
GAACCTTCTCATGAAAACAT+AGG 0.546868 5_4:+11722464 None:intergenic
GATTAATCAGAATTTGGTTG+TGG 0.548543 5_4:-11724880 Msa0837680:CDS
AATCATTAGTAGCTAAGCTA+TGG 0.551986 5_4:+11721525 None:intergenic
ATCCTTGTGTTGTTAACAAG+AGG 0.554542 5_4:-11724845 Msa0837680:CDS
TGAGGGCTATACTGGTTGAC+TGG 0.555400 5_4:-11723219 Msa0837680:CDS
GGAGGATCAGCCAGTGCCAA+TGG 0.555755 5_4:-11724077 Msa0837680:CDS
CTCTTACTACAGAAAAGTTG+AGG 0.560855 5_4:-11723718 Msa0837680:intron
AGCAATTTGACATTAATGAA+AGG 0.565905 5_4:-11723243 Msa0837680:CDS
TCCTTGTGTTGTTAACAAGA+GGG 0.566377 5_4:-11724844 Msa0837680:CDS
TTGAATAGGGAACTACCAAA+AGG 0.566910 5_4:-11724171 Msa0837680:intron
CAAGAGGGTCATTTGCATCA+GGG 0.569803 5_4:+11723769 None:intergenic
TTGACTTTCACAAGAAGGCT+GGG 0.569949 5_4:-11721654 Msa0837680:CDS
GCATAGTGAATCAGATCAGA+TGG 0.570421 5_4:-11724032 Msa0837680:intron
GAAGTTTCAGTGCCTGTGGT+TGG 0.581724 5_4:-11722851 Msa0837680:CDS
GTAAGCAACTTGGGTTGCAA+TGG 0.583489 5_4:-11721459 Msa0837680:three_prime_UTR
GGTAAGAAAGAAGCTTCAGT+TGG 0.588907 5_4:-11722912 Msa0837680:CDS
CTCATGAAAACATAGGCTGT+CGG 0.589074 5_4:+11722471 None:intergenic
TCAAATCCTCACCTAGTGAT+GGG 0.589190 5_4:+11724662 None:intergenic
TGACATTAATGAAAGGATGA+GGG 0.591362 5_4:-11723236 Msa0837680:CDS
CATGAGAAGGTTCTTAAAGG+CGG 0.594323 5_4:-11722454 Msa0837680:CDS
AAGAGGGTCATTTGCATCAG+GGG 0.596917 5_4:+11723770 None:intergenic
ATATATTCAGCAACTGCAAG+AGG 0.601924 5_4:+11723753 None:intergenic
TCAAACCTTCAAAATTTGTG+GGG 0.605336 5_4:+11725072 None:intergenic
GCCCTCTTGTTAACAACACA+AGG 0.607827 5_4:+11724843 None:intergenic
GACAAGTAAAACACTGAGTG+AGG 0.608578 5_4:+11721401 None:intergenic
AGAATTAGATCTCCAACCAC+AGG 0.618555 5_4:+11722839 None:intergenic
TATCAGACAGAGCATACACC+CGG 0.634548 5_4:-11722814 Msa0837680:CDS
AGTGGAGTAAGACATGTGAA+TGG 0.637958 5_4:-11722176 Msa0837680:CDS
TTCACAAGAAGGCTGGGACA+GGG 0.640634 5_4:-11721648 Msa0837680:CDS
TGAGGAAGTTTCAGTGCCTG+TGG 0.654299 5_4:-11722855 Msa0837680:CDS
TATATTCAGCAACTGCAAGA+GGG 0.656026 5_4:+11723754 None:intergenic
GGAAACTTACAGGAGCACAT+AGG 0.667527 5_4:-11721627 Msa0837680:CDS
TGATGAACACAAGCCAGTGG+AGG 0.670864 5_4:-11724095 Msa0837680:CDS
GAAACAATGTCTCATGCATG+AGG 0.677202 5_4:+11722978 None:intergenic
CTATGTATGGTGTCAAACAG+TGG 0.683237 5_4:-11722194 Msa0837680:CDS
TTGAGCTGTATAGACAGCAG+CGG 0.686693 5_4:+11722221 None:intergenic
TGATGATGAACACAAGCCAG+TGG 0.720589 5_4:-11724098 Msa0837680:CDS
TGTTTGTGAGAAGAAACAAG+CGG 0.747744 5_4:-11724699 Msa0837680:CDS
AAGCAACTTGGGTTGCAATG+GGG 0.774444 5_4:-11721457 Msa0837680:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAACTAAAATTTAAAAAA+AGG + chr5_4:11722563-11722582 None:intergenic 10.0%
!! TAGTTATGATAAAAAAAAAA+TGG + chr5_4:11724141-11724160 None:intergenic 10.0%
!! AAAGATTGAAAATTTCAAAA+TGG - chr5_4:11721505-11721524 Msa0837680:three_prime_UTR 15.0%
!! AAGATTGAAAATTTCAAAAT+GGG - chr5_4:11721506-11721525 Msa0837680:three_prime_UTR 15.0%
!!! TTAATTGTTTTTGTGATAAT+AGG - chr5_4:11721565-11721584 Msa0837680:CDS 15.0%
!!! AATATCTTTGTTTTTTCTTA+TGG + chr5_4:11721923-11721942 None:intergenic 15.0%
!! TATTAGCTAATTAAATAAAC+AGG + chr5_4:11722524-11722543 None:intergenic 15.0%
!!! ATTTGGATTTTATTTCAAAT+GGG - chr5_4:11722859-11722878 Msa0837680:CDS 15.0%
!!! GTTTTTTCTCAAATTATTAT+AGG + chr5_4:11722909-11722928 None:intergenic 15.0%
!! AAAACAATAATTGAATGTAA+TGG - chr5_4:11722924-11722943 Msa0837680:CDS 15.0%
!!! AAAATTCAAGAGTATAAATT+TGG + chr5_4:11723120-11723139 None:intergenic 15.0%
!!! ATTTGTTATTGAAATTTGAT+TGG + chr5_4:11723201-11723220 None:intergenic 15.0%
!! ACTATATAAAAAAAAGGTTA+TGG + chr5_4:11724759-11724778 None:intergenic 15.0%
!! AAACAATTAACTTTCATAAA+TGG - chr5_4:11725021-11725040 Msa0837680:intron 15.0%
!! AACAATTAACTTTCATAAAT+GGG - chr5_4:11725022-11725041 Msa0837680:intron 15.0%
!!! AGGTTTGATAATGATTTTTA+TGG - chr5_4:11721459-11721478 Msa0837680:three_prime_UTR 20.0%
!!! GGTTTGATAATGATTTTTAT+GGG - chr5_4:11721460-11721479 Msa0837680:three_prime_UTR 20.0%
!!! ATAATGATTTTTATGGGATT+TGG - chr5_4:11721466-11721485 Msa0837680:three_prime_UTR 20.0%
!!! TAATGATTTTTATGGGATTT+GGG - chr5_4:11721467-11721486 Msa0837680:three_prime_UTR 20.0%
!!! TGTGAATTTGTTTTCTTTTT+TGG - chr5_4:11721747-11721766 Msa0837680:intron 20.0%
!!! TTGTTTTCTTTTTTGGTTTT+TGG - chr5_4:11721754-11721773 Msa0837680:intron 20.0%
!! TCTTGATTTACTGTTATATT+AGG - chr5_4:11722191-11722210 Msa0837680:CDS 20.0%
!!! AATCCTTTTTCAAATTTTAG+TGG - chr5_4:11722645-11722664 Msa0837680:intron 20.0%
!!! CATTTGGATTTTATTTCAAA+TGG - chr5_4:11722858-11722877 Msa0837680:CDS 20.0%
!! TTTCAGAATTCCAATTAATA+TGG - chr5_4:11723166-11723185 Msa0837680:intron 20.0%
!! ATTAATCCTATATTTAATCC+AGG + chr5_4:11723389-11723408 None:intergenic 20.0%
!!! ATTTGTGTGTAAAATTTTGT+AGG - chr5_4:11723981-11724000 Msa0837680:intron 20.0%
!! ATGATAAAAAAAAAATGGCA+TGG + chr5_4:11724136-11724155 None:intergenic 20.0%
!!! GTATTTGAAATTAGTAACTA+TGG + chr5_4:11724170-11724189 None:intergenic 20.0%
!! ATATAACAAAATGACATCAT+AGG - chr5_4:11724688-11724707 Msa0837680:CDS 20.0%
!! TATAACAAAATGACATCATA+GGG - chr5_4:11724689-11724708 Msa0837680:CDS 20.0%
!! TTTCCATTATTATGTTCAAT+GGG + chr5_4:11725212-11725231 None:intergenic 20.0%
!! ATTTCCATTATTATGTTCAA+TGG + chr5_4:11725213-11725232 None:intergenic 20.0%
! ATCAAACCTTCAAAATTTGT+GGG + chr5_4:11721448-11721467 None:intergenic 25.0%
! TATCAAACCTTCAAAATTTG+TGG + chr5_4:11721449-11721468 None:intergenic 25.0%
!!! ATTGTTTTTGTGATAATAGG+AGG - chr5_4:11721568-11721587 Msa0837680:CDS 25.0%
!!! TTGTTTTTGTGATAATAGGA+GGG - chr5_4:11721569-11721588 Msa0837680:CDS 25.0%
! ATTCACAATCACAAAAAGAA+GGG + chr5_4:11721734-11721753 None:intergenic 25.0%
! AATTCACAATCACAAAAAGA+AGG + chr5_4:11721735-11721754 None:intergenic 25.0%
!!! TGGTTTTTGGTTTTGATTTT+TGG - chr5_4:11721767-11721786 Msa0837680:intron 25.0%
!! GATTTGATGATTTAAGTTTC+TGG - chr5_4:11721870-11721889 Msa0837680:intron 25.0%
!!! TTTGATTTGAATTTCTGGAT+TGG - chr5_4:11721893-11721912 Msa0837680:intron 25.0%
! TTGAGATAAGTGTTTGAATT+TGG - chr5_4:11721941-11721960 Msa0837680:intron 25.0%
!! AAGTTTTGCTAAAATGATGA+TGG - chr5_4:11722163-11722182 Msa0837680:CDS 25.0%
! TGATTTACTGTTATATTAGG+AGG - chr5_4:11722194-11722213 Msa0837680:CDS 25.0%
!! AAATCAAGTTCAAATGGATT+TGG - chr5_4:11722380-11722399 Msa0837680:intron 25.0%
! CTGCAAATAATTGATCTTAT+AGG - chr5_4:11722585-11722604 Msa0837680:intron 25.0%
! CAAATAATTGATCTTATAGG+AGG - chr5_4:11722588-11722607 Msa0837680:intron 25.0%
! CAACCACTAAAATTTGAAAA+AGG + chr5_4:11722651-11722670 None:intergenic 25.0%
! GAAAGAATTGCCATATTAAT+TGG + chr5_4:11723179-11723198 None:intergenic 25.0%
! AGCAATTTGACATTAATGAA+AGG - chr5_4:11723273-11723292 Msa0837680:CDS 25.0%
! AGTAAGCATTATCCATATTT+GGG + chr5_4:11723478-11723497 None:intergenic 25.0%
! AAGTAAGCATTATCCATATT+TGG + chr5_4:11723479-11723498 None:intergenic 25.0%
!! CAATCTTATAGACAGATTTT+TGG - chr5_4:11723568-11723587 Msa0837680:intron 25.0%
! CACAAATGCTATAAATGTAA+AGG + chr5_4:11723779-11723798 None:intergenic 25.0%
! CTTTACATTTATAGCATTTG+TGG - chr5_4:11723777-11723796 Msa0837680:CDS 25.0%
!!! TCATCGGAATTTTTAGAAAA+AGG + chr5_4:11723949-11723968 None:intergenic 25.0%
! AAATGGCATGGAAATATATT+AGG + chr5_4:11724124-11724143 None:intergenic 25.0%
! ATGGGAATTTACTAATACTA+AGG - chr5_4:11725082-11725101 Msa0837680:CDS 25.0%
!!! AGGATCTTCCATTTTTTTTG+TGG - chr5_4:11721352-11721371 Msa0837680:three_prime_UTR 30.0%
!!! GGATCTTCCATTTTTTTTGT+GGG - chr5_4:11721353-11721372 Msa0837680:three_prime_UTR 30.0%
AACACAACCCACAAAAAAAA+TGG + chr5_4:11721363-11721382 None:intergenic 30.0%
! GAAGAAAATGAAGTTTTCTG+AGG - chr5_4:11721402-11721421 Msa0837680:three_prime_UTR 30.0%
TCAAACCTTCAAAATTTGTG+GGG + chr5_4:11721447-11721466 None:intergenic 30.0%
GATTAATCAGAATTTGGTTG+TGG - chr5_4:11721636-11721655 Msa0837680:CDS 30.0%
TGTTAACAACACAAGGATAA+GGG + chr5_4:11721669-11721688 None:intergenic 30.0%
TTGTTAACAACACAAGGATA+AGG + chr5_4:11721670-11721689 None:intergenic 30.0%
!!! TGGTTTTGATTTTTGGTTTG+TGG - chr5_4:11721774-11721793 Msa0837680:intron 30.0%
!!! GGTTTTGATTTTTGGTTTGT+GGG - chr5_4:11721775-11721794 Msa0837680:intron 30.0%
!! TCTGGTTTGATTTGAATTTC+TGG - chr5_4:11721888-11721907 Msa0837680:intron 30.0%
ATGCTACATAGTTTCTGATT+TGG + chr5_4:11721979-11721998 None:intergenic 30.0%
! GCATTGACAATTCAGATTAT+TGG - chr5_4:11721995-11722014 Msa0837680:intron 30.0%
! TTTAACCACATCTGATAATG+TGG + chr5_4:11722050-11722069 None:intergenic 30.0%
TTATCTACATCTACATGTCA+CGG - chr5_4:11722081-11722100 Msa0837680:intron 30.0%
GCGTTATAGATCAGAAATAA+TGG - chr5_4:11722117-11722136 Msa0837680:intron 30.0%
!! TCATTTTAGCAAAACTTGCA+TGG + chr5_4:11722160-11722179 None:intergenic 30.0%
! GGTAGAATCTTTTATTCCTT+TGG - chr5_4:11722258-11722277 Msa0837680:CDS 30.0%
ATGTAGCAAAATTTCACCAA+AGG + chr5_4:11722277-11722296 None:intergenic 30.0%
CAGTCAAAATCTCAATCAAA+AGG + chr5_4:11722314-11722333 None:intergenic 30.0%
!!! TTGATTGAGATTTTGACTGT+TGG - chr5_4:11722315-11722334 Msa0837680:intron 30.0%
!!! TGATTGAGATTTTGACTGTT+GGG - chr5_4:11722316-11722335 Msa0837680:intron 30.0%
TTGGCAAAATCAAGTTCAAA+TGG - chr5_4:11722374-11722393 Msa0837680:intron 30.0%
AGAACACTTATCTGATCATT+TGG - chr5_4:11722842-11722861 Msa0837680:CDS 30.0%
CTAAAATTTGAAGGTGAATG+AGG + chr5_4:11722989-11723008 None:intergenic 30.0%
!! TTCACCTTCAAATTTTAGTG+TGG - chr5_4:11722991-11723010 Msa0837680:CDS 30.0%
AAATGCTTCCATTGACATTA+GGG + chr5_4:11723043-11723062 None:intergenic 30.0%
TAAATGCTTCCATTGACATT+AGG + chr5_4:11723044-11723063 None:intergenic 30.0%
TTGACATTAATGAAAGGATG+AGG - chr5_4:11723279-11723298 Msa0837680:CDS 30.0%
TGACATTAATGAAAGGATGA+GGG - chr5_4:11723280-11723299 Msa0837680:CDS 30.0%
! CAAGTCAATAGCATTTTTCA+AGG + chr5_4:11723363-11723382 None:intergenic 30.0%
AATCCTATATTTAATCCAGG+AGG + chr5_4:11723386-11723405 None:intergenic 30.0%
! ATTTAATTTCCCCCCAAATA+TGG - chr5_4:11723463-11723482 Msa0837680:intron 30.0%
TAAGCATTATCCATATTTGG+GGG + chr5_4:11723476-11723495 None:intergenic 30.0%
GTAAGCATTATCCATATTTG+GGG + chr5_4:11723477-11723496 None:intergenic 30.0%
CTACTGCAATATTATGGTTT+AGG + chr5_4:11723920-11723939 None:intergenic 30.0%
AAATCTCAGTTACTTGTCAT+CGG + chr5_4:11723965-11723984 None:intergenic 30.0%
! GTGTAAAATTTTGTAGGAGA+AGG - chr5_4:11723987-11724006 Msa0837680:intron 30.0%
TTTCATGAGAAGGTTCTTAA+AGG - chr5_4:11724059-11724078 Msa0837680:CDS 30.0%
AATCATTAGTAGCTAAGCTA+TGG + chr5_4:11724994-11725013 None:intergenic 30.0%
TAAGAATGTTGTAAGCAACT+TGG - chr5_4:11725047-11725066 Msa0837680:intron 30.0%
AAGAATGTTGTAAGCAACTT+GGG - chr5_4:11725048-11725067 Msa0837680:intron 30.0%
GTTCCCATTGAACATAATAA+TGG - chr5_4:11725206-11725225 Msa0837680:five_prime_UTR 30.0%
GCATGAAAATGAAGATCCTA+TGG + chr5_4:11721320-11721339 None:intergenic 35.0%
TTTCATGCCCTTATTCTTCT+AGG - chr5_4:11721332-11721351 Msa0837680:three_prime_UTR 35.0%
GGAAGATCCTAGAAGAATAA+GGG + chr5_4:11721342-11721361 None:intergenic 35.0%
TGGAAGATCCTAGAAGAATA+AGG + chr5_4:11721343-11721362 None:intergenic 35.0%
! AACAACCCCACAAATTTTGA+AGG - chr5_4:11721439-11721458 Msa0837680:three_prime_UTR 35.0%
! GGTTAGATTCTAGAAAGGTT+GGG - chr5_4:11721590-11721609 Msa0837680:CDS 35.0%
GGGTGTGATTAATCAGAATT+TGG - chr5_4:11721630-11721649 Msa0837680:CDS 35.0%
AATCAGAATTTGGTTGTGGA+AGG - chr5_4:11721640-11721659 Msa0837680:CDS 35.0%
! ATCCTTGTGTTGTTAACAAG+AGG - chr5_4:11721671-11721690 Msa0837680:CDS 35.0%
! TCCTTGTGTTGTTAACAAGA+GGG - chr5_4:11721672-11721691 Msa0837680:CDS 35.0%
TGTTTGTGAGAAGAAACAAG+CGG - chr5_4:11721817-11721836 Msa0837680:intron 35.0%
CACAAAAACATCTAATGCTG+AGG - chr5_4:11722237-11722256 Msa0837680:CDS 35.0%
!!! GATTGAGATTTTGACTGTTG+GGG - chr5_4:11722317-11722336 Msa0837680:intron 35.0%
TGTTGGGGTCAATTTGAATA+GGG - chr5_4:11722332-11722351 Msa0837680:intron 35.0%
TTGAATAGGGAACTACCAAA+AGG - chr5_4:11722345-11722364 Msa0837680:intron 35.0%
AACTACCAAAAGGTCAAACT+TGG - chr5_4:11722355-11722374 Msa0837680:intron 35.0%
! TTTTGCCAAGTTTGACCTTT+TGG + chr5_4:11722363-11722382 None:intergenic 35.0%
TGATCTGATTCACTATGCAT+TGG + chr5_4:11722482-11722501 None:intergenic 35.0%
!! CTGCAAGTAATTGGTCTTAT+AGG - chr5_4:11722672-11722691 Msa0837680:intron 35.0%
!! CAAGTAATTGGTCTTATAGG+AGG - chr5_4:11722675-11722694 Msa0837680:intron 35.0%
TATATTCAGCAACTGCAAGA+GGG + chr5_4:11722765-11722784 None:intergenic 35.0%
ATATATTCAGCAACTGCAAG+AGG + chr5_4:11722766-11722785 None:intergenic 35.0%
CTCTTACTACAGAAAAGTTG+AGG - chr5_4:11722798-11722817 Msa0837680:CDS 35.0%
CAGAAAAGTTGAGGTACATT+TGG - chr5_4:11722807-11722826 Msa0837680:CDS 35.0%
GCAACCACACTAAAATTTGA+AGG + chr5_4:11722998-11723017 None:intergenic 35.0%
CTGTGTTTCACCAAACTATA+TGG - chr5_4:11723247-11723266 Msa0837680:CDS 35.0%
AATTGCTGTGCCATATAGTT+TGG + chr5_4:11723260-11723279 None:intergenic 35.0%
TCAAGGTATAGTGATTCAGA+AGG + chr5_4:11723346-11723365 None:intergenic 35.0%
TTGCCTCCTGGATTAAATAT+AGG - chr5_4:11723380-11723399 Msa0837680:intron 35.0%
AAGCATTATCCATATTTGGG+GGG + chr5_4:11723475-11723494 None:intergenic 35.0%
ATTTGTCATGCACCTGAAAA+GGG + chr5_4:11723514-11723533 None:intergenic 35.0%
AATTTGTCATGCACCTGAAA+AGG + chr5_4:11723515-11723534 None:intergenic 35.0%
!! ATTTTTGGAAAAGCAGTCTG+TGG - chr5_4:11723583-11723602 Msa0837680:intron 35.0%
GGTGACATTGAAAATCTTTG+TGG - chr5_4:11723856-11723875 Msa0837680:intron 35.0%
! AATTTTGTAGGAGAAGGTGA+TGG - chr5_4:11723993-11724012 Msa0837680:intron 35.0%
GAACCTTCTCATGAAAACAT+AGG + chr5_4:11724055-11724074 None:intergenic 35.0%
! TCTAGTTCCAACTAAATCGA+AGG - chr5_4:11724418-11724437 Msa0837680:intron 35.0%
GAATAAGCCTTCGATTTAGT+TGG + chr5_4:11724428-11724447 None:intergenic 35.0%
AAAACTATGCGCAATTGTGT+TGG - chr5_4:11724460-11724479 Msa0837680:intron 35.0%
! CAGAGAATGCTCTAGTTTAA+TGG - chr5_4:11724839-11724858 Msa0837680:CDS 35.0%
! AATGGTTGACTTTCACAAGA+AGG - chr5_4:11724857-11724876 Msa0837680:CDS 35.0%
! TCACTGTTTCTCTCTTCCAT+AGG - chr5_4:11721301-11721320 Msa0837680:three_prime_UTR 40.0%
! AGGAGGGTTAGATTCTAGAA+AGG - chr5_4:11721585-11721604 Msa0837680:CDS 40.0%
! GGGTTAGATTCTAGAAAGGT+TGG - chr5_4:11721589-11721608 Msa0837680:CDS 40.0%
TCAAATCCTCACCTAGTGAT+GGG + chr5_4:11721857-11721876 None:intergenic 40.0%
ATCAAATCCTCACCTAGTGA+TGG + chr5_4:11721858-11721877 None:intergenic 40.0%
CTGTTGGGGTCAATTTGAAT+AGG - chr5_4:11722331-11722350 Msa0837680:intron 40.0%
!! TCTGTTTGCTCTAAAGCCAT+TGG + chr5_4:11722458-11722477 None:intergenic 40.0%
GCATAGTGAATCAGATCAGA+TGG - chr5_4:11722484-11722503 Msa0837680:CDS 40.0%
AGTGGTTGACTGCAAGTAAT+TGG - chr5_4:11722663-11722682 Msa0837680:intron 40.0%
CTTATAGGAGGAAGTTGAGA+TGG - chr5_4:11722687-11722706 Msa0837680:intron 40.0%
AGTTGAGATGGAGGATATCA+TGG - chr5_4:11722699-11722718 Msa0837680:intron 40.0%
TATCATGGAAGAGCCTGTTA+TGG - chr5_4:11722714-11722733 Msa0837680:intron 40.0%
TTGTCACACTGACATGTGTT+TGG - chr5_4:11722956-11722975 Msa0837680:CDS 40.0%
ATTTGAAGGTGAATGAGGAC+AGG + chr5_4:11722984-11723003 None:intergenic 40.0%
! GTTTTGCATGAACCCTTTTC+AGG - chr5_4:11723499-11723518 Msa0837680:intron 40.0%
GAAACAATGTCTCATGCATG+AGG + chr5_4:11723541-11723560 None:intergenic 40.0%
GGTAAGAAAGAAGCTTCAGT+TGG - chr5_4:11723604-11723623 Msa0837680:intron 40.0%
AGAAAGAAGCTTCAGTTGGT+TGG - chr5_4:11723608-11723627 Msa0837680:intron 40.0%
! TGGTTTAGTGGCAATGCTTT+TGG - chr5_4:11723628-11723647 Msa0837680:intron 40.0%
AGAATTAGATCTCCAACCAC+AGG + chr5_4:11723680-11723699 None:intergenic 40.0%
CATTTCCAGAACTTCTTTCC+GGG + chr5_4:11723723-11723742 None:intergenic 40.0%
CCATTTCCAGAACTTCTTTC+CGG + chr5_4:11723724-11723743 None:intergenic 40.0%
ACCTTGGTTGTGATATTGAG+TGG + chr5_4:11723805-11723824 None:intergenic 40.0%
!!! GGACTGCAGTTTTAAAACCT+TGG + chr5_4:11723821-11723840 None:intergenic 40.0%
TCTGCGCTACTGCAATATTA+TGG + chr5_4:11723926-11723945 None:intergenic 40.0%
CTCATGAAAACATAGGCTGT+CGG + chr5_4:11724048-11724067 None:intergenic 40.0%
! CAGCCTATGTTTTCATGAGA+AGG - chr5_4:11724049-11724068 Msa0837680:CDS 40.0%
CATGAGAAGGTTCTTAAAGG+CGG - chr5_4:11724062-11724081 Msa0837680:CDS 40.0%
ACAGCTCAATGCACTATGTA+TGG - chr5_4:11724309-11724328 Msa0837680:intron 40.0%
! CTATGTATGGTGTCAAACAG+TGG - chr5_4:11724322-11724341 Msa0837680:intron 40.0%
AGTGGAGTAAGACATGTGAA+TGG - chr5_4:11724340-11724359 Msa0837680:intron 40.0%
! GAGTTGATCTTCAGAGTAGT+TGG + chr5_4:11724370-11724389 None:intergenic 40.0%
GAGATCAAAAGACTATGCGT+CGG - chr5_4:11724612-11724631 Msa0837680:intron 40.0%
TTGACTTTCACAAGAAGGCT+GGG - chr5_4:11724862-11724881 Msa0837680:CDS 40.0%
! TGAACCAGCAAGTTTTCTTC+TGG - chr5_4:11724950-11724969 Msa0837680:intron 40.0%
TTCTCCAGAAGAAAACTTGC+TGG + chr5_4:11724957-11724976 None:intergenic 40.0%
! TAAGCAACTTGGGTTGCAAT+GGG - chr5_4:11725058-11725077 Msa0837680:intron 40.0%
GACAAGTAAAACACTGAGTG+AGG + chr5_4:11725118-11725137 None:intergenic 40.0%
! TGGGCAAAACAGAAGAGCAT+TGG - chr5_4:11721609-11721628 Msa0837680:CDS 45.0%
!! GGGCAAAACAGAAGAGCATT+GGG - chr5_4:11721610-11721629 Msa0837680:CDS 45.0%
GCCCTCTTGTTAACAACACA+AGG + chr5_4:11721676-11721695 None:intergenic 45.0%
TGAGAAGAAACAAGCGGATC+CGG - chr5_4:11721823-11721842 Msa0837680:intron 45.0%
! CACATCTGATAATGTGGCGT+TGG + chr5_4:11722044-11722063 None:intergenic 45.0%
CAACGCCACATTATCAGATG+TGG - chr5_4:11722042-11722061 Msa0837680:intron 45.0%
! TGATGATGAACACAAGCCAG+TGG - chr5_4:11722418-11722437 Msa0837680:intron 45.0%
ATAGGAGGAAGTTGAGATGG+AGG - chr5_4:11722690-11722709 Msa0837680:intron 45.0%
AAGAGGGTCATTTGCATCAG+GGG + chr5_4:11722749-11722768 None:intergenic 45.0%
CAAGAGGGTCATTTGCATCA+GGG + chr5_4:11722750-11722769 None:intergenic 45.0%
GGTTGCTACATATACCACTC+TGG - chr5_4:11723012-11723031 Msa0837680:intron 45.0%
TGGTTGAGCCCTAATGTCAA+TGG - chr5_4:11723032-11723051 Msa0837680:intron 45.0%
TGAAAGGATGAGGGCTATAC+TGG - chr5_4:11723289-11723308 Msa0837680:intron 45.0%
!! ACTGGTTGACTGGCTTATTG+AGG - chr5_4:11723307-11723326 Msa0837680:intron 45.0%
!! AATGCTATTGACTTGCCTCC+TGG - chr5_4:11723368-11723387 Msa0837680:intron 45.0%
!! GCTTCAGTTGGTTGGTTTAG+TGG - chr5_4:11723616-11723635 Msa0837680:intron 45.0%
! GCTTTTGGCATGCAAGTATG+AGG - chr5_4:11723643-11723662 Msa0837680:intron 45.0%
TATCAGACAGAGCATACACC+CGG - chr5_4:11723702-11723721 Msa0837680:intron 45.0%
ATACACCCGGAAAGAAGTTC+TGG - chr5_4:11723715-11723734 Msa0837680:intron 45.0%
!! CCGGAAAGAAGTTCTGGAAA+TGG - chr5_4:11723721-11723740 Msa0837680:CDS 45.0%
GCCACTCAATATCACAACCA+AGG - chr5_4:11723801-11723820 Msa0837680:CDS 45.0%
! TAGCAGCTCAAGCTGTTTCA+TGG + chr5_4:11724205-11724224 None:intergenic 45.0%
TTGAGCTGTATAGACAGCAG+CGG + chr5_4:11724298-11724317 None:intergenic 45.0%
! GTTGACTTTCACAAGAAGGC+TGG - chr5_4:11724861-11724880 Msa0837680:CDS 45.0%
! GGAAACTTACAGGAGCACAT+AGG - chr5_4:11724889-11724908 Msa0837680:CDS 45.0%
! GTAAGCAACTTGGGTTGCAA+TGG - chr5_4:11725057-11725076 Msa0837680:intron 45.0%
! AAGCAACTTGGGTTGCAATG+GGG - chr5_4:11725059-11725078 Msa0837680:intron 45.0%
!! ATAATAACTATATAAAAAAA+AGG + chr5_4:11724765-11724784 None:intergenic 5.0%
!! TTGGTTTGTGGGTGCATCAC+AGG - chr5_4:11721786-11721805 Msa0837680:intron 50.0%
!! CTAGTGATGGGTCGATGAAC+CGG + chr5_4:11721845-11721864 None:intergenic 50.0%
TGATGAACACAAGCCAGTGG+AGG - chr5_4:11722421-11722440 Msa0837680:intron 50.0%
!! TGCTCTAAAGCCATTGGCAC+TGG + chr5_4:11722452-11722471 None:intergenic 50.0%
! GGGGTGTCAATGTCCATAAC+AGG + chr5_4:11722730-11722749 None:intergenic 50.0%
GCAAGAGGGTCATTTGCATC+AGG + chr5_4:11722751-11722770 None:intergenic 50.0%
ACATTAGGGCTCAACCAGAG+TGG + chr5_4:11723029-11723048 None:intergenic 50.0%
! TGAGGGCTATACTGGTTGAC+TGG - chr5_4:11723297-11723316 Msa0837680:intron 50.0%
TGAGGAAGTTTCAGTGCCTG+TGG - chr5_4:11723661-11723680 Msa0837680:intron 50.0%
GAAGTTTCAGTGCCTGTGGT+TGG - chr5_4:11723665-11723684 Msa0837680:intron 50.0%
CAGTCCTCTTGCAGTTTCTG+CGG - chr5_4:11723835-11723854 Msa0837680:intron 50.0%
TTTCACAAGAAGGCTGGGAC+AGG - chr5_4:11724867-11724886 Msa0837680:CDS 50.0%
TTCACAAGAAGGCTGGGACA+GGG - chr5_4:11724868-11724887 Msa0837680:CDS 50.0%
TCTGGAGAACGAGTTGTAGC+TGG - chr5_4:11724968-11724987 Msa0837680:intron 50.0%
! AACTTGGGTTGCAATGGGGA+TGG - chr5_4:11725063-11725082 Msa0837680:intron 50.0%
! ACTTGGGTTGCAATGGGGAT+GGG - chr5_4:11725064-11725083 Msa0837680:intron 50.0%
CGGTTCATCGACCCATCACT+AGG - chr5_4:11721843-11721862 Msa0837680:intron 55.0%
CATCGACCCATCACTAGGTG+AGG - chr5_4:11721848-11721867 Msa0837680:intron 55.0%
GTCACCGCAGAAACTGCAAG+AGG + chr5_4:11723842-11723861 None:intergenic 55.0%
GCTGGGACAGGGAAACTTAC+AGG - chr5_4:11724879-11724898 Msa0837680:CDS 55.0%
GGAGGATCAGCCAGTGCCAA+TGG - chr5_4:11722439-11722458 Msa0837680:CDS 60.0%
GCAGCGGCAGCTAGTTGAGA+AGG + chr5_4:11724282-11724301 None:intergenic 60.0%
!! GGCACTGGCTGATCCTCCAC+TGG + chr5_4:11722437-11722456 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 11721270 11725268 11721270 ID=Msa0837680;Name=Msa0837680
chr5_4 mRNA 11721270 11725268 11721270 ID=Msa0837680-mRNA-1;Parent=Msa0837680;Name=Msa0837680-mRNA-1;_AED=0.13;_eAED=0.13;_QI=139|1|1|1|1|1|11|282|428
chr5_4 exon 11721270 11721696 11721270 ID=Msa0837680-mRNA-1:exon:5189;Parent=Msa0837680-mRNA-1
chr5_4 exon 11722147 11722325 11722147 ID=Msa0837680-mRNA-1:exon:5188;Parent=Msa0837680-mRNA-1
chr5_4 exon 11722437 11722535 11722437 ID=Msa0837680-mRNA-1:exon:5187;Parent=Msa0837680-mRNA-1
chr5_4 exon 11722796 11723017 11722796 ID=Msa0837680-mRNA-1:exon:5186;Parent=Msa0837680-mRNA-1
chr5_4 exon 11723210 11723299 11723210 ID=Msa0837680-mRNA-1:exon:5185;Parent=Msa0837680-mRNA-1
chr5_4 exon 11723719 11723844 11723719 ID=Msa0837680-mRNA-1:exon:5184;Parent=Msa0837680-mRNA-1
chr5_4 exon 11724033 11724185 11724033 ID=Msa0837680-mRNA-1:exon:5183;Parent=Msa0837680-mRNA-1
chr5_4 exon 11724280 11724325 11724280 ID=Msa0837680-mRNA-1:exon:5182;Parent=Msa0837680-mRNA-1
chr5_4 exon 11724674 11724730 11724674 ID=Msa0837680-mRNA-1:exon:5181;Parent=Msa0837680-mRNA-1
chr5_4 exon 11724834 11724951 11724834 ID=Msa0837680-mRNA-1:exon:5180;Parent=Msa0837680-mRNA-1
chr5_4 exon 11725078 11725268 11725078 ID=Msa0837680-mRNA-1:exon:5179;Parent=Msa0837680-mRNA-1
chr5_4 five_prime_UTR 11725130 11725268 11725130 ID=Msa0837680-mRNA-1:five_prime_utr;Parent=Msa0837680-mRNA-1
chr5_4 CDS 11725078 11725129 11725078 ID=Msa0837680-mRNA-1:cds;Parent=Msa0837680-mRNA-1
chr5_4 CDS 11724834 11724951 11724834 ID=Msa0837680-mRNA-1:cds;Parent=Msa0837680-mRNA-1
chr5_4 CDS 11724674 11724730 11724674 ID=Msa0837680-mRNA-1:cds;Parent=Msa0837680-mRNA-1
chr5_4 CDS 11724280 11724325 11724280 ID=Msa0837680-mRNA-1:cds;Parent=Msa0837680-mRNA-1
chr5_4 CDS 11724033 11724185 11724033 ID=Msa0837680-mRNA-1:cds;Parent=Msa0837680-mRNA-1
chr5_4 CDS 11723719 11723844 11723719 ID=Msa0837680-mRNA-1:cds;Parent=Msa0837680-mRNA-1
chr5_4 CDS 11723210 11723299 11723210 ID=Msa0837680-mRNA-1:cds;Parent=Msa0837680-mRNA-1
chr5_4 CDS 11722796 11723017 11722796 ID=Msa0837680-mRNA-1:cds;Parent=Msa0837680-mRNA-1
chr5_4 CDS 11722437 11722535 11722437 ID=Msa0837680-mRNA-1:cds;Parent=Msa0837680-mRNA-1
chr5_4 CDS 11722147 11722325 11722147 ID=Msa0837680-mRNA-1:cds;Parent=Msa0837680-mRNA-1
chr5_4 CDS 11721552 11721696 11721552 ID=Msa0837680-mRNA-1:cds;Parent=Msa0837680-mRNA-1
chr5_4 three_prime_UTR 11721270 11721551 11721270 ID=Msa0837680-mRNA-1:three_prime_utr;Parent=Msa0837680-mRNA-1
Gene Sequence

>Msa0837680

ATGAAGTTTTCTGAGGAGAACAATGTTTCTAACAACCCCACAAATTTTGAAGGAGGGTTAGATTCTAGAAAGGTTGGGCAAAACAGAAGAGCATTGGGTGTGATTAATCAGAATTTGGTTGTGGAAGGACGCCCTTATCCTTGTGTTGTTAACAAGAGGGCATTGTCAGAGAGAAATGATGTTTGTGAGAAGAAACAAGCGGATCCGGTTCATCGACCCATCACTAGGAGGTTTGCTGCAAAGATTGCTAGCACAAAAACATCTAATGCTGAGGGAACTACCAAAAGGTCAAACTTGGCAAAATCAAGTTCAAATGGATTTGGAGATTTCATATTTGTTGATGATGAACACAAGCCAGTGGAGGATCAGCCAGTGCCAATGGCTTTAGAGCAAACAGAACCAATGCATAGTGAATCAGATCAGATGGAGGAAGTTGAGATGGAGGATATCATGGAAGAGCCTGTTATGGACATTGACACCCCTGATGCAAATGACCCTCTTGCAGTTGCTGAATATATTGAAGATCTTTACTCTTACTACAGAAAAGTTGAGAGTACTAGCTGTGTTTCACCAAACTATATGGCACAGCAATTTGACATTAATGAAAGGATGAGGGCTATACTGGTTGACTGGCTTATTGAGGTGCATGACAAATTCGACCTCATGCATGAGACATTGTTTCTCACTGTCAATCTTATAGACAGATTTTTGGAAAAGCAGTCTGTGGTAAGAAAGAAGCTTCAGTTGGTTGGTTTAGTGGCAATGCTTTTGGCATGCAAGTATGAGGAAGTTTCAGTGCCTGTGGTTGGAGATCTAATTCTTATATCAGACAGAGCATACACCCGGAAAGAAGTTCTGGAAATGGAGAAGGTGATGGTCAATGCATTGAAGTTTAACATATCTGTGCCGACAGCCTATGTTTTCATGAGAAGGTTCTTAAAGGCGGCTCAAGCAGACAGAAAACTTGAGCTGCTAGCTTTCTTCTTGATTGAGCTATCTCTTGTAGAATATGCAATGTTGAAGTTCTCTCCTTCTCAACTAGCTGCCGCTGCTGTCTATACAGCTCAATGCACTATGTATGGTGTCAAACAGTGGAGTAAGACATGTGAATGGCACACCAACTACTCTGAAGATCAACTCTTAGAATGCTCTAGTTTAATGGTTGACTTTCACAAGAAGGCTGGGACAGGGAAACTTACAGGAGCACATAGGAAGTATTGCACATCAAAATTTAGCTATACTGCGAAATGTGAACCAGCAAGTTTTCTTCTGGAGAACGAGTTGTAG

Protein sequence

>Msa0837680

MKFSEENNVSNNPTNFEGGLDSRKVGQNRRALGVINQNLVVEGRPYPCVVNKRALSERNDVCEKKQADPVHRPITRRFAAKIASTKTSNAEGTTKRSNLAKSSSNGFGDFIFVDDEHKPVEDQPVPMALEQTEPMHSESDQMEEVEMEDIMEEPVMDIDTPDANDPLAVAEYIEDLYSYYRKVESTSCVSPNYMAQQFDINERMRAILVDWLIEVHDKFDLMHETLFLTVNLIDRFLEKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDRAYTRKEVLEMEKVMVNALKFNISVPTAYVFMRRFLKAAQADRKLELLAFFLIELSLVEYAMLKFSPSQLAAAAVYTAQCTMYGVKQWSKTCEWHTNYSEDQLLECSSLMVDFHKKAGTGKLTGAHRKYCTSKFSYTAKCEPASFLLENEL*