Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138180 | XP_024628039.1 | 96.744 | 430 | 14 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138180 | A0A072VRU0 | 96.744 | 430 | 14 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010800 | Msa0138180 | 0.973985 | 2.300644e-137 | -8.615850e-47 |
| Msa0129690 | Msa0138180 | 0.814748 | 1.315450e-51 | -8.615850e-47 |
| Msa0138180 | Msa0264680 | 0.827697 | 1.355655e-54 | -8.615850e-47 |
| Msa0138180 | Msa0276430 | 0.822739 | 2.016217e-53 | -8.615850e-47 |
| Msa0138180 | Msa0302730 | 0.814503 | 1.490511e-51 | -8.615850e-47 |
| Msa0138180 | Msa0316470 | 0.803100 | 4.094927e-49 | -8.615850e-47 |
| Msa0138180 | Msa0713060 | 0.820762 | 5.779298e-53 | -8.615850e-47 |
| Msa0138180 | Msa0965780 | 0.813854 | 2.072670e-51 | -8.615850e-47 |
| Msa0138180 | Msa1000800 | 0.815183 | 1.053125e-51 | -8.615850e-47 |
| Msa0138180 | Msa1029520 | 0.811018 | 8.636570e-51 | -8.615850e-47 |
| Msa0138180 | Msa1214170 | 0.822284 | 2.571650e-53 | -8.615850e-47 |
| Msa0138180 | Msa1225580 | 0.814935 | 1.195885e-51 | -8.615850e-47 |
| Msa0138180 | Msa1252810 | 0.822719 | 2.037826e-53 | -8.615850e-47 |
| Msa0138180 | Msa1355510 | 0.828319 | 9.606105e-55 | -8.615850e-47 |
| Msa0138180 | Msa1360020 | 0.825594 | 4.304697e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138180 | MtrunA17_Chr1g0211071 | 96.744 | 430 | 14 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
| Msa0138180 | MtrunA17_Chr3g0145681 | 46.118 | 425 | 167 | 14 | 12 | 420 | 6 | 384 | 3.14e-85 | 265 |
| Msa0138180 | MtrunA17_Chr8g0381161 | 28.708 | 209 | 135 | 4 | 232 | 430 | 208 | 412 | 2.91e-14 | 74.3 |
| Msa0138180 | MtrunA17_Chr2g0277291 | 29.082 | 196 | 122 | 5 | 248 | 430 | 194 | 385 | 1.08e-12 | 69.3 |
| Msa0138180 | MtrunA17_Chr8g0381111 | 27.485 | 171 | 107 | 4 | 176 | 332 | 226 | 393 | 3.06e-12 | 68.2 |
| Msa0138180 | MtrunA17_Chr8g0381141 | 27.485 | 171 | 107 | 4 | 176 | 332 | 167 | 334 | 4.50e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0138180 | AT2G16900.5 | 30.097 | 412 | 218 | 13 | 59 | 430 | 1 | 382 | 1.41e-39 | 146 |
| Msa0138180 | AT2G16900.6 | 30.097 | 412 | 218 | 13 | 59 | 430 | 1 | 382 | 1.41e-39 | 146 |
| Msa0138180 | AT2G16900.1 | 30.097 | 412 | 218 | 13 | 59 | 430 | 1 | 382 | 1.41e-39 | 146 |
| Msa0138180 | AT4G35110.1 | 39.896 | 193 | 106 | 2 | 238 | 430 | 204 | 386 | 8.87e-39 | 144 |
| Msa0138180 | AT4G35110.2 | 39.896 | 193 | 106 | 2 | 238 | 430 | 204 | 386 | 8.87e-39 | 144 |
| Msa0138180 | AT4G35110.6 | 39.896 | 193 | 106 | 2 | 238 | 430 | 204 | 386 | 8.87e-39 | 144 |
| Msa0138180 | AT4G35110.5 | 39.896 | 193 | 106 | 2 | 238 | 430 | 204 | 386 | 8.87e-39 | 144 |
| Msa0138180 | AT4G35110.4 | 39.896 | 193 | 106 | 2 | 238 | 430 | 216 | 398 | 1.13e-38 | 144 |
| Msa0138180 | AT4G35110.3 | 39.896 | 193 | 106 | 2 | 238 | 430 | 219 | 401 | 1.26e-38 | 144 |
| Msa0138180 | AT2G16900.3 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.67e-35 | 133 |
| Msa0138180 | AT2G16900.4 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.67e-35 | 133 |
| Msa0138180 | AT2G16900.2 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.67e-35 | 133 |
| Msa0138180 | AT2G16900.7 | 37.864 | 206 | 114 | 3 | 229 | 430 | 98 | 293 | 1.67e-35 | 133 |
| Msa0138180 | AT4G38550.5 | 34.896 | 192 | 125 | 0 | 235 | 426 | 317 | 508 | 2.42e-34 | 134 |
| Msa0138180 | AT4G38550.3 | 35.149 | 202 | 130 | 1 | 228 | 429 | 412 | 612 | 3.46e-34 | 135 |
| Msa0138180 | AT4G38550.1 | 35.149 | 202 | 130 | 1 | 228 | 429 | 412 | 612 | 3.46e-34 | 135 |
| Msa0138180 | AT4G38550.2 | 35.149 | 202 | 130 | 1 | 228 | 429 | 449 | 649 | 4.07e-34 | 135 |
| Msa0138180 | AT4G38550.4 | 34.872 | 195 | 127 | 0 | 235 | 429 | 359 | 553 | 4.09e-34 | 134 |
| Msa0138180 | AT5G11140.1 | 36.216 | 185 | 118 | 0 | 246 | 430 | 57 | 241 | 1.19e-33 | 126 |
| Msa0138180 | AT4G38560.1 | 36.181 | 199 | 125 | 1 | 234 | 430 | 323 | 521 | 8.84e-32 | 127 |
| Msa0138180 | AT4G38560.2 | 36.181 | 199 | 125 | 1 | 234 | 430 | 325 | 523 | 9.73e-32 | 127 |
| Msa0138180 | AT2G20960.3 | 34.197 | 193 | 127 | 0 | 238 | 430 | 486 | 678 | 1.43e-31 | 127 |
| Msa0138180 | AT2G20960.2 | 34.197 | 193 | 127 | 0 | 238 | 430 | 521 | 713 | 1.69e-31 | 127 |
| Msa0138180 | AT2G20960.1 | 34.197 | 193 | 127 | 0 | 238 | 430 | 556 | 748 | 2.05e-31 | 127 |
| Msa0138180 | AT2G20960.4 | 34.197 | 193 | 127 | 0 | 238 | 430 | 556 | 748 | 2.05e-31 | 127 |
| Msa0138180 | AT2G20950.5 | 35.829 | 187 | 120 | 0 | 240 | 426 | 196 | 382 | 5.55e-28 | 114 |
| Msa0138180 | AT2G20950.9 | 35.829 | 187 | 120 | 0 | 240 | 426 | 196 | 382 | 5.55e-28 | 114 |
| Msa0138180 | AT2G20950.11 | 35.829 | 187 | 120 | 0 | 240 | 426 | 225 | 411 | 1.71e-27 | 113 |
| Msa0138180 | AT2G20950.2 | 35.829 | 187 | 120 | 0 | 240 | 426 | 315 | 501 | 1.71e-27 | 114 |
| Msa0138180 | AT2G20950.4 | 35.829 | 187 | 120 | 0 | 240 | 426 | 334 | 520 | 1.74e-27 | 115 |
| Msa0138180 | AT2G20950.3 | 35.829 | 187 | 120 | 0 | 240 | 426 | 317 | 503 | 1.82e-27 | 114 |
| Msa0138180 | AT2G20950.1 | 35.829 | 187 | 120 | 0 | 240 | 426 | 332 | 518 | 1.89e-27 | 114 |
| Msa0138180 | AT2G20950.8 | 35.829 | 187 | 120 | 0 | 240 | 426 | 359 | 545 | 2.36e-27 | 114 |
| Msa0138180 | AT2G20950.6 | 35.829 | 187 | 120 | 0 | 240 | 426 | 286 | 472 | 2.43e-27 | 114 |
| Msa0138180 | AT2G20950.14 | 35.829 | 187 | 120 | 0 | 240 | 426 | 288 | 474 | 2.55e-27 | 114 |
| Msa0138180 | AT2G20950.7 | 35.829 | 187 | 120 | 0 | 240 | 426 | 359 | 545 | 2.94e-27 | 114 |
| Msa0138180 | AT2G20950.12 | 35.829 | 187 | 120 | 0 | 240 | 426 | 281 | 467 | 3.48e-27 | 113 |
| Msa0138180 | AT2G20950.13 | 35.829 | 187 | 120 | 0 | 240 | 426 | 315 | 501 | 4.10e-27 | 113 |
| Msa0138180 | AT2G20950.10 | 35.829 | 187 | 120 | 0 | 240 | 426 | 315 | 501 | 4.10e-27 | 113 |
Find 124 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATCCAAGGTTGATAATT+TGG | 0.133061 | 1_3:-70957106 | Msa0138180:CDS |
| GCCTGGTTCCAAGACGTTTA+AGG | 0.212905 | 1_3:+70956909 | None:intergenic |
| TCTTGGAACCAGGCCAATTT+TGG | 0.212961 | 1_3:-70956900 | Msa0138180:three_prime_UTR |
| AAGATAAATGGCGCCAATTT+TGG | 0.217899 | 1_3:+70958209 | None:intergenic |
| CAAGCCACCTAAGAATAAAA+AGG | 0.248587 | 1_3:-70959586 | Msa0138180:CDS |
| AGTTTATATTATGACATTTC+AGG | 0.266845 | 1_3:-70956684 | Msa0138180:three_prime_UTR |
| CTGCTTGATTTGTCTGTATC+TGG | 0.275302 | 1_3:+70957805 | None:intergenic |
| AGAATGTCTGGAGCTGATTC+AGG | 0.287049 | 1_3:-70958790 | Msa0138180:intron |
| TCGCAAAGCTGCTCCAAAAT+TGG | 0.297229 | 1_3:+70956887 | None:intergenic |
| AAACCTGTTACTGTTTCATT+TGG | 0.304219 | 1_3:-70960363 | Msa0138180:five_prime_UTR |
| GACATACTGTTTAATCTCTT+GGG | 0.310133 | 1_3:-70956751 | Msa0138180:three_prime_UTR |
| TGAGATGAAGTCATCTGATT+TGG | 0.311588 | 1_3:-70957148 | Msa0138180:CDS |
| CAATCTATCTTTGACAAGTA+TGG | 0.315042 | 1_3:-70957561 | Msa0138180:CDS |
| GCGAAAAGCATTAACTATTA+AGG | 0.321016 | 1_3:-70956849 | Msa0138180:three_prime_UTR |
| TTATTTATTTACTTTATGTT+TGG | 0.322958 | 1_3:-70956654 | Msa0138180:three_prime_UTR |
| GACCATATGGCTTTGTTTGA+TGG | 0.324094 | 1_3:+70960498 | None:intergenic |
| TTTCCAAATGAAACAGTAAC+AGG | 0.332312 | 1_3:+70960360 | None:intergenic |
| ATGGCTTTGTTTGATGGTTA+TGG | 0.347436 | 1_3:+70960504 | None:intergenic |
| AGACATACTGTTTAATCTCT+TGG | 0.350486 | 1_3:-70956752 | Msa0138180:three_prime_UTR |
| GTTGCAATCAACCTCAATAA+TGG | 0.352010 | 1_3:-70957457 | Msa0138180:CDS |
| ATTAATAATGTAAACTGCTT+AGG | 0.358005 | 1_3:-70957052 | Msa0138180:three_prime_UTR |
| ATGTCATCAAAACAGGTTAC+TGG | 0.372121 | 1_3:+70957753 | None:intergenic |
| AGTTTCTGAGACGCGTGTTC+CGG | 0.372391 | 1_3:-70957625 | Msa0138180:CDS |
| TTTGGATAGCAGATCATTGC+TGG | 0.373557 | 1_3:-70957088 | Msa0138180:CDS |
| AGCCAACAATTCCTTAACTT+TGG | 0.375480 | 1_3:+70957422 | None:intergenic |
| TGCTTCAATTAATTTCCATA+TGG | 0.386029 | 1_3:-70960604 | Msa0138180:five_prime_UTR |
| TGGTAAGGATTAGATGCTTT+AGG | 0.387405 | 1_3:+70958838 | None:intergenic |
| AGTGTTCCAGCCTCCAAAAT+TGG | 0.390259 | 1_3:-70958222 | Msa0138180:CDS |
| CTGTTTCATTTGGAAATTTG+TGG | 0.403170 | 1_3:-70960353 | Msa0138180:five_prime_UTR |
| TTGAGGTTGATTGCAACTCT+TGG | 0.403873 | 1_3:+70957463 | None:intergenic |
| CTGTCAAGAACTGGGAGTTC+AGG | 0.405904 | 1_3:+70958243 | None:intergenic |
| TGTTGAGATAGATGTGTGTT+TGG | 0.406531 | 1_3:+70960385 | None:intergenic |
| TTCTCCAATGTCATCAAAAC+AGG | 0.411746 | 1_3:+70957746 | None:intergenic |
| GCTGGAACACTGTCAAGAAC+TGG | 0.413594 | 1_3:+70958234 | None:intergenic |
| GTCCAAAGTTAAGGAATTGT+TGG | 0.414758 | 1_3:-70957424 | Msa0138180:CDS |
| ACACAGTTTGGCATAACTCT+TGG | 0.416359 | 1_3:+70959675 | None:intergenic |
| GGTTGGACTTTGTCATTGAC+AGG | 0.416998 | 1_3:+70957855 | None:intergenic |
| CCTTCGCTGCCTCCACGGAC+TGG | 0.417167 | 1_3:+70957304 | None:intergenic |
| TTTGACAAGTATGGCGATAT+AGG | 0.417915 | 1_3:-70957552 | Msa0138180:CDS |
| CTTTGTTAATTCCATTATTG+AGG | 0.418558 | 1_3:+70957446 | None:intergenic |
| TACTTTATGTTTGGATGCTG+AGG | 0.418763 | 1_3:-70956645 | Msa0138180:three_prime_UTR |
| ATTAACAAAGTCCAAAGTTA+AGG | 0.424679 | 1_3:-70957433 | Msa0138180:CDS |
| AGATTCTCAGAACCATCCTT+TGG | 0.426249 | 1_3:+70957834 | None:intergenic |
| TGCCGCATCAGCAAGATAAA+TGG | 0.426980 | 1_3:+70958197 | None:intergenic |
| ATAATACACCTTAAACGTCT+TGG | 0.433733 | 1_3:-70956917 | Msa0138180:three_prime_UTR |
| TTAGAAGCATATACACAGTT+TGG | 0.434446 | 1_3:+70959663 | None:intergenic |
| GATGGTTCTGAGAATCTTGC+CGG | 0.438726 | 1_3:-70957828 | Msa0138180:CDS |
| CTTGTATGCGGAAAATAACT+TGG | 0.442279 | 1_3:+70956773 | None:intergenic |
| TATAGGAGAAAGCTGCCATT+TGG | 0.447354 | 1_3:-70957535 | Msa0138180:CDS |
| AATTGCCAGAAAAGAATGTC+TGG | 0.451422 | 1_3:-70958802 | Msa0138180:CDS |
| GGCTGACTCTGATAGTGAAA+TGG | 0.452176 | 1_3:-70957283 | Msa0138180:CDS |
| TCAATTAATTTCCATATGGA+TGG | 0.455991 | 1_3:-70960600 | Msa0138180:five_prime_UTR |
| ATTATAGTCATCCATCCATA+TGG | 0.457030 | 1_3:+70960589 | None:intergenic |
| TTCACATGATATCTTCCAAC+CGG | 0.462469 | 1_3:+70957606 | None:intergenic |
| TGGATGTAACAGTTACCCTT+AGG | 0.467251 | 1_3:-70959755 | Msa0138180:intron |
| ACTTGTCAAAGATAGATTGC+AGG | 0.471370 | 1_3:+70957565 | None:intergenic |
| GCTATCCAAATTATCAACCT+TGG | 0.473319 | 1_3:+70957101 | None:intergenic |
| AATTGAATTCCTTGATCTTG+TGG | 0.477003 | 1_3:+70959610 | None:intergenic |
| AGAAAGCTGCCATTTGGAAT+CGG | 0.478703 | 1_3:-70957529 | Msa0138180:CDS |
| GAGGACAGTGATGATGAAGA+GGG | 0.480600 | 1_3:-70957660 | Msa0138180:CDS |
| AATGTAAACTGCTTAGGTAA+TGG | 0.481977 | 1_3:-70957046 | Msa0138180:three_prime_UTR |
| CGCCATTTATCTTGCTGATG+CGG | 0.483504 | 1_3:-70958199 | Msa0138180:CDS |
| CTTAGGTTGGTTTGTAGCAA+AGG | 0.483917 | 1_3:-70959738 | Msa0138180:five_prime_UTR |
| TCATTCCATTAACCTTTGAC+AGG | 0.484823 | 1_3:-70958287 | Msa0138180:CDS |
| ATCAGAATAACAAAAGTGCT+TGG | 0.488484 | 1_3:+70957698 | None:intergenic |
| AACCATCAAACAAAGCCATA+TGG | 0.489608 | 1_3:-70960500 | Msa0138180:five_prime_UTR |
| TCTCAGAACCATCCTTTGGT+TGG | 0.489848 | 1_3:+70957838 | None:intergenic |
| GTCAGCCTTCGCTGCCTCCA+CGG | 0.492054 | 1_3:+70957299 | None:intergenic |
| ACCTTAAACGTCTTGGAACC+AGG | 0.497652 | 1_3:-70956910 | Msa0138180:three_prime_UTR |
| CCAGTCCGTGGAGGCAGCGA+AGG | 0.500128 | 1_3:-70957304 | Msa0138180:CDS |
| AATGAGATAGTACCAGCTTC+TGG | 0.501090 | 1_3:-70958126 | Msa0138180:CDS |
| TCGTCTTTGACTTCCTTCCT+AGG | 0.513305 | 1_3:-70960306 | Msa0138180:intron |
| AAGCTGCTCCAAAATTGGCC+TGG | 0.517308 | 1_3:+70956892 | None:intergenic |
| GGTGTTATAGAAAGTGAGAT+AGG | 0.519458 | 1_3:-70958901 | Msa0138180:CDS |
| CTGCTCAACTTCGCGTGACG+TGG | 0.519956 | 1_3:-70957380 | Msa0138180:CDS |
| CTTTGCTACAAACCAACCTA+AGG | 0.520047 | 1_3:+70959739 | None:intergenic |
| TGAATGAATGAGAATTAAGA+AGG | 0.520621 | 1_3:+70960461 | None:intergenic |
| GTTTGTAGCAAAGGTGAGGA+AGG | 0.521953 | 1_3:-70959729 | Msa0138180:five_prime_UTR |
| TTGTACTGCAATTGATGCAT+TGG | 0.522973 | 1_3:+70956817 | None:intergenic |
| TTTACATCACACGCATGGTA+AGG | 0.525868 | 1_3:+70958823 | None:intergenic |
| GCATCACAACCGATTCCAAA+TGG | 0.527475 | 1_3:+70957520 | None:intergenic |
| CAACTGAATCAATAAAGTCA+TGG | 0.529124 | 1_3:-70956981 | Msa0138180:three_prime_UTR |
| ATATGGAAATTAATTGAAGC+AGG | 0.533008 | 1_3:+70960606 | None:intergenic |
| GAAGGTCTAACTACATCAGC+TGG | 0.534751 | 1_3:-70957726 | Msa0138180:CDS |
| TTTATGTTTGGATGCTGAGG+GGG | 0.535399 | 1_3:-70956642 | Msa0138180:three_prime_UTR |
| TCAAAGATAGATTGCAGGAT+GGG | 0.535446 | 1_3:+70957570 | None:intergenic |
| TGAGGACAGTGATGATGAAG+AGG | 0.538033 | 1_3:-70957661 | Msa0138180:CDS |
| ACATACTGTTTAATCTCTTG+GGG | 0.538286 | 1_3:-70956750 | Msa0138180:three_prime_UTR |
| CATGTATGATGTACCTAGGA+AGG | 0.540441 | 1_3:+70960293 | None:intergenic |
| TGTAACAGTTACCCTTAGGT+TGG | 0.543413 | 1_3:-70959751 | Msa0138180:intron |
| AACTGAATCAATAAAGTCAT+GGG | 0.545840 | 1_3:-70956980 | Msa0138180:three_prime_UTR |
| ACTTTATGTTTGGATGCTGA+GGG | 0.547355 | 1_3:-70956644 | Msa0138180:three_prime_UTR |
| TGATGTTCTCCGTGATAATG+AGG | 0.548223 | 1_3:-70957679 | Msa0138180:CDS |
| AAATTGCATCCACAAGATCA+AGG | 0.554464 | 1_3:-70959619 | Msa0138180:CDS |
| AGGTAATGGTATTAGTATTG+TGG | 0.555687 | 1_3:-70957032 | Msa0138180:three_prime_UTR |
| TTGATTTGTCTGTATCTGGC+CGG | 0.560826 | 1_3:+70957809 | None:intergenic |
| CTGGAACACTGTCAAGAACT+GGG | 0.575472 | 1_3:+70958235 | None:intergenic |
| GTATGTAGTTCACCAGAAGC+TGG | 0.576929 | 1_3:+70958114 | None:intergenic |
| AGGTGAGACTTGTATAGAGA+TGG | 0.579664 | 1_3:-70959709 | Msa0138180:exon |
| CAGGCTATCTATCAAATCCA+AGG | 0.583999 | 1_3:-70957118 | Msa0138180:CDS |
| GTTGGTTTGTAGCAAAGGTG+AGG | 0.590459 | 1_3:-70959733 | Msa0138180:five_prime_UTR |
| TCTGAGACGCGTGTTCCGGT+TGG | 0.592815 | 1_3:-70957621 | Msa0138180:CDS |
| GACAAAGTCCAACCAAAGGA+TGG | 0.593512 | 1_3:-70957846 | Msa0138180:CDS |
| CTTTATGTTTGGATGCTGAG+GGG | 0.602280 | 1_3:-70956643 | Msa0138180:three_prime_UTR |
| CAGATACAGACAAATCAAGC+AGG | 0.602638 | 1_3:-70957804 | Msa0138180:CDS |
| GTCAAAGATAGATTGCAGGA+TGG | 0.607166 | 1_3:+70957569 | None:intergenic |
| AGTCAAAGACGATGGTGATG+AGG | 0.608775 | 1_3:+70960317 | None:intergenic |
| GGCAATTTACATCACACGCA+TGG | 0.610083 | 1_3:+70958818 | None:intergenic |
| CATTGATGAGCACCAGTCCG+TGG | 0.628033 | 1_3:-70957316 | Msa0138180:CDS |
| CATCACTGTCCTCATTATCA+CGG | 0.628549 | 1_3:+70957670 | None:intergenic |
| CATACTGTTTAATCTCTTGG+GGG | 0.629501 | 1_3:-70956749 | Msa0138180:three_prime_UTR |
| ACTACATACTCTAGATGTCA+AGG | 0.630737 | 1_3:-70958100 | Msa0138180:intron |
| ATGGTGATGAGGAAGTTAGT+AGG | 0.636592 | 1_3:+70960328 | None:intergenic |
| AGTACAATAGAGACTAGAGT+TGG | 0.641551 | 1_3:-70956801 | Msa0138180:three_prime_UTR |
| ATTTGGAATCGGTTGTGATG+CGG | 0.643613 | 1_3:-70957518 | Msa0138180:CDS |
| GGTCTAACTACATCAGCTGG+TGG | 0.651697 | 1_3:-70957723 | Msa0138180:CDS |
| TTTGCTACAAACCAACCTAA+GGG | 0.653462 | 1_3:+70959740 | None:intergenic |
| GGTTGGAAGATATCATGTGA+AGG | 0.654478 | 1_3:-70957604 | Msa0138180:CDS |
| TTTGACTCAGAAAGAACGGG+AGG | 0.654627 | 1_3:-70957223 | Msa0138180:CDS |
| CAATGACAAAGTCCAACCAA+AGG | 0.663967 | 1_3:-70957850 | Msa0138180:CDS |
| TAAACAGTATGTCTTGTATG+CGG | 0.667935 | 1_3:+70956761 | None:intergenic |
| ACTTCATCTCAAGCTCGCTG+AGG | 0.681126 | 1_3:+70957160 | None:intergenic |
| TGATGAGCACCAGTCCGTGG+AGG | 0.694249 | 1_3:-70957313 | Msa0138180:CDS |
| AGGAAGGAAGTCAAAGACGA+TGG | 0.694831 | 1_3:+70960309 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTCATATATATATATAT+AGG | - | chr1_3:70958157-70958176 | Msa0138180:CDS | 10.0% |
| !! | ATAAATATATTTAACAAAGA+TGG | - | chr1_3:70959234-70959253 | Msa0138180:intron | 10.0% |
| !! | ATATTAAAACAAAAATTGAA+GGG | - | chr1_3:70960006-70960025 | Msa0138180:intron | 10.0% |
| !! | TTATTTATTTACTTTATGTT+TGG | - | chr1_3:70960546-70960565 | Msa0138180:five_prime_UTR | 10.0% |
| !! | AAAAAATAAGTATGTTCAAT+TGG | - | chr1_3:70956652-70956671 | Msa0138180:three_prime_UTR | 15.0% |
| !!! | ATAATTTTTTTATGAGTTGA+TGG | - | chr1_3:70957153-70957172 | Msa0138180:CDS | 15.0% |
| !!! | GTTTAATTTGTTTATTTGAT+TGG | - | chr1_3:70957425-70957444 | Msa0138180:CDS | 15.0% |
| !! | TAATATAGTTTAGTTATGTA+TGG | - | chr1_3:70957923-70957942 | Msa0138180:intron | 15.0% |
| !! | AGAGATTAAAAATTTATGAT+AGG | + | chr1_3:70957977-70957996 | None:intergenic | 15.0% |
| !!! | TTGTCATAATATTTTGATAT+TGG | + | chr1_3:70959032-70959051 | None:intergenic | 15.0% |
| !! | GATATTAAAACAAAAATTGA+AGG | - | chr1_3:70960005-70960024 | Msa0138180:intron | 15.0% |
| !!! | CAAACATTAATTTTATGACA+TGG | - | chr1_3:70957057-70957076 | Msa0138180:exon | 20.0% |
| !!! | TTTTTTGTCTTTTTCAGATT+TGG | - | chr1_3:70957335-70957354 | Msa0138180:CDS | 20.0% |
| !!! | TTTTTGTCTTTTTCAGATTT+GGG | - | chr1_3:70957336-70957355 | Msa0138180:CDS | 20.0% |
| !!! | ATACTCTTTTTAATATACCT+TGG | - | chr1_3:70957668-70957687 | Msa0138180:CDS | 20.0% |
| !!! | TATTTTCATATAAGCTATCA+TGG | + | chr1_3:70957794-70957813 | None:intergenic | 20.0% |
| !! | TGATAAACACTTATACTAAA+AGG | - | chr1_3:70957869-70957888 | Msa0138180:intron | 20.0% |
| !! | GATAAACACTTATACTAAAA+GGG | - | chr1_3:70957870-70957889 | Msa0138180:intron | 20.0% |
| !! | AGAACTAATAATTTATCCTT+TGG | - | chr1_3:70958190-70958209 | Msa0138180:CDS | 20.0% |
| !! | AATTGCAGATAAAAAATGAA+GGG | + | chr1_3:70958439-70958458 | None:intergenic | 20.0% |
| !! | AAATTGCAGATAAAAAATGA+AGG | + | chr1_3:70958440-70958459 | None:intergenic | 20.0% |
| !!! | CATTTTTTATCTGCAATTTA+TGG | - | chr1_3:70958441-70958460 | Msa0138180:intron | 20.0% |
| !! | TTTGTCAACTTACAAATATT+TGG | - | chr1_3:70958809-70958828 | Msa0138180:CDS | 20.0% |
| !! | ATATTATGACAAGAAAAAGT+TGG | - | chr1_3:70959040-70959059 | Msa0138180:intron | 20.0% |
| !! | AAAAGAACTAGAATCAAAAA+TGG | - | chr1_3:70959950-70959969 | Msa0138180:intron | 20.0% |
| !! | ATTAATAATGTAAACTGCTT+AGG | - | chr1_3:70960148-70960167 | Msa0138180:intron | 20.0% |
| !!! | CTATGCTATATTTTAAAGAT+AGG | - | chr1_3:70960245-70960264 | Msa0138180:intron | 20.0% |
| !!! | ACCAAAAAGTACTAAATTTA+GGG | + | chr1_3:70960487-70960506 | None:intergenic | 20.0% |
| !!! | AACCAAAAAGTACTAAATTT+AGG | + | chr1_3:70960488-70960507 | None:intergenic | 20.0% |
| !! | AGTTTATATTATGACATTTC+AGG | - | chr1_3:70960516-70960535 | Msa0138180:five_prime_UTR | 20.0% |
| ! | TCAATTAATTTCCATATGGA+TGG | - | chr1_3:70956600-70956619 | Msa0138180:three_prime_UTR | 25.0% |
| ! | TGAATGAATGAGAATTAAGA+AGG | + | chr1_3:70956742-70956761 | None:intergenic | 25.0% |
| ! | GAAGAATGAAAGATAGAAAA+AGG | + | chr1_3:70956942-70956961 | None:intergenic | 25.0% |
| ! | ACTATACATACACAAGAAAA+AGG | + | chr1_3:70957379-70957398 | None:intergenic | 25.0% |
| ! | TCTATTGATATTAGCACATA+TGG | - | chr1_3:70957719-70957738 | Msa0138180:CDS | 25.0% |
| ! | CTATTGATATTAGCACATAT+GGG | - | chr1_3:70957720-70957739 | Msa0138180:CDS | 25.0% |
| !!! | AGTTTTTTCTTTATCCAAAC+AGG | - | chr1_3:70957900-70957919 | Msa0138180:intron | 25.0% |
| ! | ACTAAACTATATTACCTGTT+TGG | + | chr1_3:70957917-70957936 | None:intergenic | 25.0% |
| !!! | CTTTTTTTAGGCATAAAAAC+AGG | + | chr1_3:70958039-70958058 | None:intergenic | 25.0% |
| ! | TATAATCGATACAACTATAG+AGG | + | chr1_3:70958065-70958084 | None:intergenic | 25.0% |
| ! | GCAATTATTTCATATCAGTT+AGG | + | chr1_3:70958216-70958235 | None:intergenic | 25.0% |
| !!! | GAAAAGCTTTGGAAAAAAAA+AGG | + | chr1_3:70958274-70958293 | None:intergenic | 25.0% |
| ! | AATAACTAAGTGTTCATTCA+TGG | - | chr1_3:70958853-70958872 | Msa0138180:CDS | 25.0% |
| ! | CTACAATCTTCTTAAATTGT+AGG | - | chr1_3:70958888-70958907 | Msa0138180:CDS | 25.0% |
| !!! | CTAATAGAATTTTCTGAAGA+GGG | + | chr1_3:70959151-70959170 | None:intergenic | 25.0% |
| !!! | TCTAATAGAATTTTCTGAAG+AGG | + | chr1_3:70959152-70959171 | None:intergenic | 25.0% |
| ! | TTAACTATATGCTATTGAGA+AGG | + | chr1_3:70959296-70959315 | None:intergenic | 25.0% |
| ! | CTTTGTTAATTCCATTATTG+AGG | + | chr1_3:70959757-70959776 | None:intergenic | 25.0% |
| ! | ATTAACAAAGTCCAAAGTTA+AGG | - | chr1_3:70959767-70959786 | Msa0138180:intron | 25.0% |
| !!! | AAATTTTGACTCAGAAAGAA+CGG | - | chr1_3:70959973-70959992 | Msa0138180:intron | 25.0% |
| ! | AACTGAATCAATAAAGTCAT+GGG | - | chr1_3:70960220-70960239 | Msa0138180:intron | 25.0% |
| !!! | CCAAAAAGTACTAAATTTAG+GGG | + | chr1_3:70960486-70960505 | None:intergenic | 25.0% |
| ATTATAGTCATCCATCCATA+TGG | + | chr1_3:70956614-70956633 | None:intergenic | 30.0% | |
| AAACCTGTTACTGTTTCATT+TGG | - | chr1_3:70956837-70956856 | Msa0138180:three_prime_UTR | 30.0% | |
| TTTCCAAATGAAACAGTAAC+AGG | + | chr1_3:70956843-70956862 | None:intergenic | 30.0% | |
| CTGTTTCATTTGGAAATTTG+TGG | - | chr1_3:70956847-70956866 | Msa0138180:three_prime_UTR | 30.0% | |
| TGTTTCTTCTTTCTGTTTCA+TGG | - | chr1_3:70956974-70956993 | Msa0138180:three_prime_UTR | 30.0% | |
| GTTTCTTCTTTCTGTTTCAT+GGG | - | chr1_3:70956975-70956994 | Msa0138180:three_prime_UTR | 30.0% | |
| !!! | TTTTTTGTATCACCTTTTGC+TGG | - | chr1_3:70957290-70957309 | Msa0138180:CDS | 30.0% |
| ! | TTTTTGTATCACCTTTTGCT+GGG | - | chr1_3:70957291-70957310 | Msa0138180:CDS | 30.0% |
| ! | TTAGAAGCATATACACAGTT+TGG | + | chr1_3:70957540-70957559 | None:intergenic | 30.0% |
| AATTGAATTCCTTGATCTTG+TGG | + | chr1_3:70957593-70957612 | None:intergenic | 30.0% | |
| AAGCCACCTAAGAATAAAAA+GGG | - | chr1_3:70957615-70957634 | Msa0138180:CDS | 30.0% | |
| ! | AAAAAGAGTATACATCAAGC+AGG | + | chr1_3:70957659-70957678 | None:intergenic | 30.0% |
| TCAAATAAGCCAATTCAAAG+AGG | + | chr1_3:70957694-70957713 | None:intergenic | 30.0% | |
| TGCAGTTACAAATGAGTATT+TGG | - | chr1_3:70958003-70958022 | Msa0138180:intron | 30.0% | |
| !!! | CTATAGAGGTGACTTTTTTT+AGG | + | chr1_3:70958051-70958070 | None:intergenic | 30.0% |
| AGTTAACACGACACATAAAT+TGG | + | chr1_3:70958549-70958568 | None:intergenic | 30.0% | |
| TCTCCTAATTAAGATGAAAG+TGG | - | chr1_3:70958572-70958591 | Msa0138180:intron | 30.0% | |
| ACACCACTTTCATCTTAATT+AGG | + | chr1_3:70958578-70958597 | None:intergenic | 30.0% | |
| AGTCTAGAAACAGATTGATT+TGG | - | chr1_3:70958616-70958635 | Msa0138180:intron | 30.0% | |
| TATTGCCATATTCTTAGCTA+TGG | + | chr1_3:70958837-70958856 | None:intergenic | 30.0% | |
| ! | TTTTTCCTGTCAAAGGTTAA+TGG | + | chr1_3:70958921-70958940 | None:intergenic | 30.0% |
| !!! | TAGCTTTTTTTTCCTGTCAA+AGG | + | chr1_3:70958928-70958947 | None:intergenic | 30.0% |
| TTTGACAGGAAAAAAAAGCT+AGG | - | chr1_3:70958927-70958946 | Msa0138180:intron | 30.0% | |
| ATGTGAAAATGAAGACAACA+AGG | + | chr1_3:70959200-70959219 | None:intergenic | 30.0% | |
| ! | TTGTTGTCTTCATTTTCACA+TGG | - | chr1_3:70959199-70959218 | Msa0138180:intron | 30.0% |
| TATATACCAGATAACTAACC+TGG | + | chr1_3:70959268-70959287 | None:intergenic | 30.0% | |
| !! | ATCAGAATAACAAAAGTGCT+TGG | + | chr1_3:70959505-70959524 | None:intergenic | 30.0% |
| CAATCTATCTTTGACAAGTA+TGG | - | chr1_3:70959639-70959658 | Msa0138180:CDS | 30.0% | |
| !!! | AATTTTGACTCAGAAAGAAC+GGG | - | chr1_3:70959974-70959993 | Msa0138180:intron | 30.0% |
| !! | CAAATCCAAGGTTGATAATT+TGG | - | chr1_3:70960094-70960113 | Msa0138180:intron | 30.0% |
| AATGTAAACTGCTTAGGTAA+TGG | - | chr1_3:70960154-70960173 | Msa0138180:intron | 30.0% | |
| ! | AGGTAATGGTATTAGTATTG+TGG | - | chr1_3:70960168-70960187 | Msa0138180:intron | 30.0% |
| CAACTGAATCAATAAAGTCA+TGG | - | chr1_3:70960219-70960238 | Msa0138180:intron | 30.0% | |
| ATAATACACCTTAAACGTCT+TGG | - | chr1_3:70960283-70960302 | Msa0138180:intron | 30.0% | |
| ! | TAATAGTTAATGCTTTTCGC+TGG | + | chr1_3:70960351-70960370 | None:intergenic | 30.0% |
| !! | GCGAAAAGCATTAACTATTA+AGG | - | chr1_3:70960351-70960370 | Msa0138180:five_prime_UTR | 30.0% |
| TAAACAGTATGTCTTGTATG+CGG | + | chr1_3:70960442-70960461 | None:intergenic | 30.0% | |
| AGACATACTGTTTAATCTCT+TGG | - | chr1_3:70960448-70960467 | Msa0138180:five_prime_UTR | 30.0% | |
| GACATACTGTTTAATCTCTT+GGG | - | chr1_3:70960449-70960468 | Msa0138180:five_prime_UTR | 30.0% | |
| ACATACTGTTTAATCTCTTG+GGG | - | chr1_3:70960450-70960469 | Msa0138180:five_prime_UTR | 30.0% | |
| ! | CCCCTAAATTTAGTACTTTT+TGG | - | chr1_3:70960483-70960502 | Msa0138180:five_prime_UTR | 30.0% |
| !! | ATGGCTTTGTTTGATGGTTA+TGG | + | chr1_3:70956699-70956718 | None:intergenic | 35.0% |
| AACCATCAAACAAAGCCATA+TGG | - | chr1_3:70956700-70956719 | Msa0138180:three_prime_UTR | 35.0% | |
| !!! | AGCGTTTGTTTTTGACCATA+TGG | + | chr1_3:70956718-70956737 | None:intergenic | 35.0% |
| TGTTGAGATAGATGTGTGTT+TGG | + | chr1_3:70956818-70956837 | None:intergenic | 35.0% | |
| AAAGCATGTATGATGTACCT+AGG | + | chr1_3:70956914-70956933 | None:intergenic | 35.0% | |
| ! | CTTTTTGTAAACCCAGCAAA+AGG | + | chr1_3:70957305-70957324 | None:intergenic | 35.0% |
| !!! | TTGTCTTTTTCAGATTTGGG+TGG | - | chr1_3:70957339-70957358 | Msa0138180:CDS | 35.0% |
| TTTGCTACAAACCAACCTAA+GGG | + | chr1_3:70957463-70957482 | None:intergenic | 35.0% | |
| !! | TTTTGAGTGCATTCATGGTA+GGG | + | chr1_3:70957564-70957583 | None:intergenic | 35.0% |
| !! | ATTTTGAGTGCATTCATGGT+AGG | + | chr1_3:70957565-70957584 | None:intergenic | 35.0% |
| !! | TGCAATTTTGAGTGCATTCA+TGG | + | chr1_3:70957569-70957588 | None:intergenic | 35.0% |
| AAATTGCATCCACAAGATCA+AGG | - | chr1_3:70957581-70957600 | Msa0138180:CDS | 35.0% | |
| ! | CTTTTTATTCTTAGGTGGCT+TGG | + | chr1_3:70957616-70957635 | None:intergenic | 35.0% |
| CAAGCCACCTAAGAATAAAA+AGG | - | chr1_3:70957614-70957633 | Msa0138180:CDS | 35.0% | |
| ! | GATCCCTTTTTATTCTTAGG+TGG | + | chr1_3:70957621-70957640 | None:intergenic | 35.0% |
| ! | CCAGATCCCTTTTTATTCTT+AGG | + | chr1_3:70957624-70957643 | None:intergenic | 35.0% |
| CCTAAGAATAAAAAGGGATC+TGG | - | chr1_3:70957621-70957640 | Msa0138180:CDS | 35.0% | |
| ! | AGTCAAAACAGAAGCATACA+TGG | + | chr1_3:70958138-70958157 | None:intergenic | 35.0% |
| TTTCATATCAGTTAGGCCAA+AGG | + | chr1_3:70958209-70958228 | None:intergenic | 35.0% | |
| GAGTTGAGTGATTTATAGCT+AGG | + | chr1_3:70958238-70958257 | None:intergenic | 35.0% | |
| ! | TTTTCCAAAGCTTTTCGCAA+AGG | - | chr1_3:70958278-70958297 | Msa0138180:CDS | 35.0% |
| ! | GGTGTTATAGAAAGTGAGAT+AGG | - | chr1_3:70958299-70958318 | Msa0138180:intron | 35.0% |
| TGGTAAGGATTAGATGCTTT+AGG | + | chr1_3:70958365-70958384 | None:intergenic | 35.0% | |
| AATTGCCAGAAAAGAATGTC+TGG | - | chr1_3:70958398-70958417 | Msa0138180:intron | 35.0% | |
| !! | CTAGAAACAGATTGATTTGG+AGG | - | chr1_3:70958619-70958638 | Msa0138180:intron | 35.0% |
| CACTAGTATGAACTCATTGA+TGG | + | chr1_3:70958783-70958802 | None:intergenic | 35.0% | |
| TCATTCCATTAACCTTTGAC+AGG | - | chr1_3:70958913-70958932 | Msa0138180:CDS | 35.0% | |
| ! | AAGATAAATGGCGCCAATTT+TGG | + | chr1_3:70958994-70959013 | None:intergenic | 35.0% |
| !! | GGTACTATCTCATTGCTTTT+CGG | + | chr1_3:70959068-70959087 | None:intergenic | 35.0% |
| ACTACATACTCTAGATGTCA+AGG | - | chr1_3:70959100-70959119 | Msa0138180:intron | 35.0% | |
| ATGTCATCAAAACAGGTTAC+TGG | + | chr1_3:70959450-70959469 | None:intergenic | 35.0% | |
| !!! | GTAACCTGTTTTGATGACAT+TGG | - | chr1_3:70959450-70959469 | Msa0138180:intron | 35.0% |
| TTCTCCAATGTCATCAAAAC+AGG | + | chr1_3:70959457-70959476 | None:intergenic | 35.0% | |
| !!! | TGTTTTGATGACATTGGAGA+AGG | - | chr1_3:70959456-70959475 | Msa0138180:intron | 35.0% |
| TTCACATGATATCTTCCAAC+CGG | + | chr1_3:70959597-70959616 | None:intergenic | 35.0% | |
| TCAAAGATAGATTGCAGGAT+GGG | + | chr1_3:70959633-70959652 | None:intergenic | 35.0% | |
| ACTTGTCAAAGATAGATTGC+AGG | + | chr1_3:70959638-70959657 | None:intergenic | 35.0% | |
| TTTGACAAGTATGGCGATAT+AGG | - | chr1_3:70959648-70959667 | Msa0138180:CDS | 35.0% | |
| GTTGCAATCAACCTCAATAA+TGG | - | chr1_3:70959743-70959762 | Msa0138180:five_prime_UTR | 35.0% | |
| GTCCAAAGTTAAGGAATTGT+TGG | - | chr1_3:70959776-70959795 | Msa0138180:intron | 35.0% | |
| AGCCAACAATTCCTTAACTT+TGG | + | chr1_3:70959781-70959800 | None:intergenic | 35.0% | |
| TGAGATGAAGTCATCTGATT+TGG | - | chr1_3:70960052-70960071 | Msa0138180:intron | 35.0% | |
| !! | CATCTGATTTGGAGAAAAAC+AGG | - | chr1_3:70960063-70960082 | Msa0138180:intron | 35.0% |
| GCTATCCAAATTATCAACCT+TGG | + | chr1_3:70960102-70960121 | None:intergenic | 35.0% | |
| TTGTACTGCAATTGATGCAT+TGG | + | chr1_3:70960386-70960405 | None:intergenic | 35.0% | |
| AGTACAATAGAGACTAGAGT+TGG | - | chr1_3:70960399-70960418 | Msa0138180:five_prime_UTR | 35.0% | |
| CTTGTATGCGGAAAATAACT+TGG | + | chr1_3:70960430-70960449 | None:intergenic | 35.0% | |
| CATACTGTTTAATCTCTTGG+GGG | - | chr1_3:70960451-70960470 | Msa0138180:five_prime_UTR | 35.0% | |
| TACTTTATGTTTGGATGCTG+AGG | - | chr1_3:70960555-70960574 | Msa0138180:five_prime_UTR | 35.0% | |
| ACTTTATGTTTGGATGCTGA+GGG | - | chr1_3:70960556-70960575 | Msa0138180:five_prime_UTR | 35.0% | |
| !! | GACCATATGGCTTTGTTTGA+TGG | + | chr1_3:70956705-70956724 | None:intergenic | 40.0% |
| ! | ATGGTGATGAGGAAGTTAGT+AGG | + | chr1_3:70956875-70956894 | None:intergenic | 40.0% |
| CATGTATGATGTACCTAGGA+AGG | + | chr1_3:70956910-70956929 | None:intergenic | 40.0% | |
| !! | TATGAGTTGATGGAGTCCAA+TGG | - | chr1_3:70957163-70957182 | Msa0138180:CDS | 40.0% |
| TGAATCATCACACACACCAT+TGG | + | chr1_3:70957182-70957201 | None:intergenic | 40.0% | |
| AATGGTGTGTGTGATGATTC+AGG | - | chr1_3:70957181-70957200 | Msa0138180:CDS | 40.0% | |
| TGTGTGATGATTCAGGTGAT+TGG | - | chr1_3:70957188-70957207 | Msa0138180:CDS | 40.0% | |
| TGGATGTAACAGTTACCCTT+AGG | - | chr1_3:70957445-70957464 | Msa0138180:CDS | 40.0% | |
| TGTAACAGTTACCCTTAGGT+TGG | - | chr1_3:70957449-70957468 | Msa0138180:CDS | 40.0% | |
| CTTTGCTACAAACCAACCTA+AGG | + | chr1_3:70957464-70957483 | None:intergenic | 40.0% | |
| !! | CTTAGGTTGGTTTGTAGCAA+AGG | - | chr1_3:70957462-70957481 | Msa0138180:CDS | 40.0% |
| AGGTGAGACTTGTATAGAGA+TGG | - | chr1_3:70957491-70957510 | Msa0138180:CDS | 40.0% | |
| ACACAGTTTGGCATAACTCT+TGG | + | chr1_3:70957528-70957547 | None:intergenic | 40.0% | |
| ATACCTTGGCCTCTTTGAAT+TGG | - | chr1_3:70957682-70957701 | Msa0138180:CDS | 40.0% | |
| AAACACCATTTCTGCACTGT+TGG | - | chr1_3:70957950-70957969 | Msa0138180:intron | 40.0% | |
| ! | ACAGAAGCATACATGGAGAA+AGG | + | chr1_3:70958131-70958150 | None:intergenic | 40.0% |
| AACACCTTTGCGAAAAGCTT+TGG | + | chr1_3:70958285-70958304 | None:intergenic | 40.0% | |
| GAAGAAAAACACATGCACTC+AGG | - | chr1_3:70958335-70958354 | Msa0138180:intron | 40.0% | |
| TTTACATCACACGCATGGTA+AGG | + | chr1_3:70958380-70958399 | None:intergenic | 40.0% | |
| TGGAGGCTGAAAATAAACTG+TGG | - | chr1_3:70958636-70958655 | Msa0138180:intron | 40.0% | |
| TGGAGCCATAGCTAAGAATA+TGG | - | chr1_3:70958829-70958848 | Msa0138180:CDS | 40.0% | |
| ! | ATAAATGGCGCCAATTTTGG+AGG | + | chr1_3:70958991-70959010 | None:intergenic | 40.0% |
| AATGAGATAGTACCAGCTTC+TGG | - | chr1_3:70959074-70959093 | Msa0138180:intron | 40.0% | |
| GTCTCTTGCCATTGTATCTA+TGG | - | chr1_3:70959319-70959338 | Msa0138180:intron | 40.0% | |
| CAATGACAAAGTCCAACCAA+AGG | - | chr1_3:70959350-70959369 | Msa0138180:intron | 40.0% | |
| AGATTCTCAGAACCATCCTT+TGG | + | chr1_3:70959369-70959388 | None:intergenic | 40.0% | |
| !! | TTGATTTGTCTGTATCTGGC+CGG | + | chr1_3:70959394-70959413 | None:intergenic | 40.0% |
| !! | CTGCTTGATTTGTCTGTATC+TGG | + | chr1_3:70959398-70959417 | None:intergenic | 40.0% |
| CAGATACAGACAAATCAAGC+AGG | - | chr1_3:70959396-70959415 | Msa0138180:intron | 40.0% | |
| ! | TGATGTTCTCCGTGATAATG+AGG | - | chr1_3:70959521-70959540 | Msa0138180:intron | 40.0% |
| CATCACTGTCCTCATTATCA+CGG | + | chr1_3:70959533-70959552 | None:intergenic | 40.0% | |
| GGTTGGAAGATATCATGTGA+AGG | - | chr1_3:70959596-70959615 | Msa0138180:CDS | 40.0% | |
| GTCAAAGATAGATTGCAGGA+TGG | + | chr1_3:70959634-70959653 | None:intergenic | 40.0% | |
| TATAGGAGAAAGCTGCCATT+TGG | - | chr1_3:70959665-70959684 | Msa0138180:CDS | 40.0% | |
| ! | AGAAAGCTGCCATTTGGAAT+CGG | - | chr1_3:70959671-70959690 | Msa0138180:CDS | 40.0% |
| ! | ATTTGGAATCGGTTGTGATG+CGG | - | chr1_3:70959682-70959701 | Msa0138180:CDS | 40.0% |
| ! | TTGAGGTTGATTGCAACTCT+TGG | + | chr1_3:70959740-70959759 | None:intergenic | 40.0% |
| CAGGCTATCTATCAAATCCA+AGG | - | chr1_3:70960082-70960101 | Msa0138180:intron | 40.0% | |
| TTTGGATAGCAGATCATTGC+TGG | - | chr1_3:70960112-70960131 | Msa0138180:intron | 40.0% | |
| ! | AGTTAATGCTTTTCGCTGGT+TGG | + | chr1_3:70960347-70960366 | None:intergenic | 40.0% |
| CTTTATGTTTGGATGCTGAG+GGG | - | chr1_3:70960557-70960576 | Msa0138180:five_prime_UTR | 40.0% | |
| TTTATGTTTGGATGCTGAGG+GGG | - | chr1_3:70960558-70960577 | Msa0138180:five_prime_UTR | 40.0% | |
| ! | AGTCAAAGACGATGGTGATG+AGG | + | chr1_3:70956886-70956905 | None:intergenic | 45.0% |
| AGGAAGGAAGTCAAAGACGA+TGG | + | chr1_3:70956894-70956913 | None:intergenic | 45.0% | |
| ! | TCGTCTTTGACTTCCTTCCT+AGG | - | chr1_3:70956894-70956913 | Msa0138180:three_prime_UTR | 45.0% |
| !! | GTTGGTTTGTAGCAAAGGTG+AGG | - | chr1_3:70957467-70957486 | Msa0138180:CDS | 45.0% |
| GTTTGTAGCAAAGGTGAGGA+AGG | - | chr1_3:70957471-70957490 | Msa0138180:CDS | 45.0% | |
| AAGCCAATTCAAAGAGGCCA+AGG | + | chr1_3:70957688-70957707 | None:intergenic | 45.0% | |
| TAGGACCAACAGTGCAGAAA+TGG | + | chr1_3:70957958-70957977 | None:intergenic | 45.0% | |
| GGCAATTTACATCACACGCA+TGG | + | chr1_3:70958385-70958404 | None:intergenic | 45.0% | |
| ! | CAGCTCCAGACATTCTTTTC+TGG | + | chr1_3:70958406-70958425 | None:intergenic | 45.0% |
| ! | AGAATGTCTGGAGCTGATTC+AGG | - | chr1_3:70958410-70958429 | Msa0138180:intron | 45.0% |
| CTGGAACACTGTCAAGAACT+GGG | + | chr1_3:70958968-70958987 | None:intergenic | 45.0% | |
| AGTGTTCCAGCCTCCAAAAT+TGG | - | chr1_3:70958978-70958997 | Msa0138180:intron | 45.0% | |
| CGCCATTTATCTTGCTGATG+CGG | - | chr1_3:70959001-70959020 | Msa0138180:intron | 45.0% | |
| TGCCGCATCAGCAAGATAAA+TGG | + | chr1_3:70959006-70959025 | None:intergenic | 45.0% | |
| GTATGTAGTTCACCAGAAGC+TGG | + | chr1_3:70959089-70959108 | None:intergenic | 45.0% | |
| ! | AAGAGGGTGTGAGAAAAGAG+GGG | + | chr1_3:70959135-70959154 | None:intergenic | 45.0% |
| ! | GAAGAGGGTGTGAGAAAAGA+GGG | + | chr1_3:70959136-70959155 | None:intergenic | 45.0% |
| ! | TGAAGAGGGTGTGAGAAAAG+AGG | + | chr1_3:70959137-70959156 | None:intergenic | 45.0% |
| ! | TCAGAGCCAGGTTAGTTATC+TGG | - | chr1_3:70959259-70959278 | Msa0138180:intron | 45.0% |
| ACAGGCTGCCATAGATACAA+TGG | + | chr1_3:70959330-70959349 | None:intergenic | 45.0% | |
| GGTTGGACTTTGTCATTGAC+AGG | + | chr1_3:70959348-70959367 | None:intergenic | 45.0% | |
| GACAAAGTCCAACCAAAGGA+TGG | - | chr1_3:70959354-70959373 | Msa0138180:intron | 45.0% | |
| TCTCAGAACCATCCTTTGGT+TGG | + | chr1_3:70959365-70959384 | None:intergenic | 45.0% | |
| !! | GATGGTTCTGAGAATCTTGC+CGG | - | chr1_3:70959372-70959391 | Msa0138180:intron | 45.0% |
| GAAGGTCTAACTACATCAGC+TGG | - | chr1_3:70959474-70959493 | Msa0138180:intron | 45.0% | |
| ! | TGAGGACAGTGATGATGAAG+AGG | - | chr1_3:70959539-70959558 | Msa0138180:intron | 45.0% |
| ! | GAGGACAGTGATGATGAAGA+GGG | - | chr1_3:70959540-70959559 | Msa0138180:intron | 45.0% |
| ! | GCATCACAACCGATTCCAAA+TGG | + | chr1_3:70959683-70959702 | None:intergenic | 45.0% |
| ! | GGCTGACTCTGATAGTGAAA+TGG | - | chr1_3:70959917-70959936 | Msa0138180:intron | 45.0% |
| TTTGACTCAGAAAGAACGGG+AGG | - | chr1_3:70959977-70959996 | Msa0138180:intron | 45.0% | |
| ACCTTAAACGTCTTGGAACC+AGG | - | chr1_3:70960290-70960309 | Msa0138180:intron | 45.0% | |
| ! | TCTTGGAACCAGGCCAATTT+TGG | - | chr1_3:70960300-70960319 | Msa0138180:intron | 45.0% |
| TCGCAAAGCTGCTCCAAAAT+TGG | + | chr1_3:70960316-70960335 | None:intergenic | 45.0% | |
| CTGTCAAGAACTGGGAGTTC+AGG | + | chr1_3:70958960-70958979 | None:intergenic | 50.0% | |
| GCTGGAACACTGTCAAGAAC+TGG | + | chr1_3:70958969-70958988 | None:intergenic | 50.0% | |
| ! | ACAAAGATGGTGTCAGAGCC+AGG | - | chr1_3:70959247-70959266 | Msa0138180:intron | 50.0% |
| GGTCTAACTACATCAGCTGG+TGG | - | chr1_3:70959477-70959496 | Msa0138180:intron | 50.0% | |
| !! | AGTTTCTGAGACGCGTGTTC+CGG | - | chr1_3:70959575-70959594 | Msa0138180:intron | 50.0% |
| ACTTCATCTCAAGCTCGCTG+AGG | + | chr1_3:70960043-70960062 | None:intergenic | 50.0% | |
| GCCTGGTTCCAAGACGTTTA+AGG | + | chr1_3:70960294-70960313 | None:intergenic | 50.0% | |
| AAGCTGCTCCAAAATTGGCC+TGG | + | chr1_3:70960311-70960330 | None:intergenic | 50.0% | |
| !! | ATGGCGCCAATTTTGGAGGC+TGG | + | chr1_3:70958987-70959006 | None:intergenic | 55.0% |
| CATTGATGAGCACCAGTCCG+TGG | - | chr1_3:70959884-70959903 | Msa0138180:intron | 55.0% | |
| ATGTTTGGATGCTGAGGGGG+AGG | - | chr1_3:70960561-70960580 | Msa0138180:five_prime_UTR | 55.0% | |
| TGTTTGGATGCTGAGGGGGA+GGG | - | chr1_3:70960562-70960581 | Msa0138180:five_prime_UTR | 55.0% | |
| ! | TCTGAGACGCGTGTTCCGGT+TGG | - | chr1_3:70959579-70959598 | Msa0138180:intron | 60.0% |
| CTGCTCAACTTCGCGTGACG+TGG | - | chr1_3:70959820-70959839 | Msa0138180:intron | 60.0% | |
| TGATGAGCACCAGTCCGTGG+AGG | - | chr1_3:70959887-70959906 | Msa0138180:intron | 60.0% | |
| GTCAGCCTTCGCTGCCTCCA+CGG | + | chr1_3:70959904-70959923 | None:intergenic | 65.0% | |
| CCTTCGCTGCCTCCACGGAC+TGG | + | chr1_3:70959899-70959918 | None:intergenic | 70.0% | |
| CCAGTCCGTGGAGGCAGCGA+AGG | - | chr1_3:70959896-70959915 | Msa0138180:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 70956597 | 70960625 | 70956597 | ID=Msa0138180;Name=Msa0138180 |
| chr1_3 | mRNA | 70956597 | 70960625 | 70956597 | ID=Msa0138180-mRNA-1;Parent=Msa0138180;Name=Msa0138180-mRNA-1;_AED=0.12;_eAED=0.12;_QI=372|1|1|1|0.75|0.6|5|477|430 |
| chr1_3 | exon | 70956597 | 70957877 | 70956597 | ID=Msa0138180-mRNA-1:exon:24662;Parent=Msa0138180-mRNA-1 |
| chr1_3 | exon | 70958101 | 70958312 | 70958101 | ID=Msa0138180-mRNA-1:exon:24661;Parent=Msa0138180-mRNA-1 |
| chr1_3 | exon | 70958791 | 70958934 | 70958791 | ID=Msa0138180-mRNA-1:exon:24660;Parent=Msa0138180-mRNA-1 |
| chr1_3 | exon | 70959580 | 70959765 | 70959580 | ID=Msa0138180-mRNA-1:exon:24659;Parent=Msa0138180-mRNA-1 |
| chr1_3 | exon | 70960307 | 70960625 | 70960307 | ID=Msa0138180-mRNA-1:exon:24658;Parent=Msa0138180-mRNA-1 |
| chr1_3 | five_prime_UTR | 70960307 | 70960625 | 70960307 | ID=Msa0138180-mRNA-1:five_prime_utr;Parent=Msa0138180-mRNA-1 |
| chr1_3 | five_prime_UTR | 70959713 | 70959765 | 70959713 | ID=Msa0138180-mRNA-1:five_prime_utr;Parent=Msa0138180-mRNA-1 |
| chr1_3 | CDS | 70959580 | 70959712 | 70959580 | ID=Msa0138180-mRNA-1:cds;Parent=Msa0138180-mRNA-1 |
| chr1_3 | CDS | 70958791 | 70958934 | 70958791 | ID=Msa0138180-mRNA-1:cds;Parent=Msa0138180-mRNA-1 |
| chr1_3 | CDS | 70958101 | 70958312 | 70958101 | ID=Msa0138180-mRNA-1:cds;Parent=Msa0138180-mRNA-1 |
| chr1_3 | CDS | 70957074 | 70957877 | 70957074 | ID=Msa0138180-mRNA-1:cds;Parent=Msa0138180-mRNA-1 |
| chr1_3 | three_prime_UTR | 70956597 | 70957073 | 70956597 | ID=Msa0138180-mRNA-1:three_prime_utr;Parent=Msa0138180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
