AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1024120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1024120 MtrunA17_Chr7g0241811 91.860 516 9 3 1 484 1 515 0.0 954
Msa1024120 MtrunA17_Chr4g0005971 71.602 493 106 4 15 481 25 509 0.0 702
Msa1024120 MtrunA17_Chr4g0005961 70.588 34 10 0 425 458 1 34 5.76e-13 63.9
Msa1024120 MtrunA17_Chr4g0047711 25.225 333 205 13 92 391 5 326 1.78e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1024120 AT5G01220.1 73.474 426 90 1 80 482 84 509 0.0 650
Msa1024120 AT5G01220.2 75.595 336 59 1 80 392 84 419 0.0 516

Find 137 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCAAGATCCTATTAATT+TGG 0.186753 7_1:+52634833 None:intergenic
ACTTCCCTATTGAAATTATA+AGG 0.226774 7_1:-52631240 Msa1024120:three_prime_UTR
ATTACCCTTTCCAACTTCTT+TGG 0.232734 7_1:-52637489 Msa1024120:five_prime_UTR
AACACTTGGCTTCGTTGTTT+TGG 0.243869 7_1:-52631828 Msa1024120:CDS
GCTACCTCTGAAATTATTCT+TGG 0.256331 7_1:+52634054 None:intergenic
ATTTGGCTCCATAAAATTCT+TGG 0.263085 7_1:+52634850 None:intergenic
AATAGGGTCATGAAGGATTT+AGG 0.285334 7_1:+52631281 None:intergenic
TAATGCCTTATAATTTCAAT+AGG 0.320295 7_1:+52631235 None:intergenic
TATCAAATGCCTTCGAGAAA+TGG 0.321585 7_1:-52635121 Msa1024120:CDS
CTTGGAGTTGAAAAGAGTTT+AGG 0.324101 7_1:-52632881 Msa1024120:CDS
TTCTGCTTTATCCATGTTAG+TGG 0.324376 7_1:+52637195 None:intergenic
ACAATGCTGCCATCTGGTTC+TGG 0.350326 7_1:-52631559 Msa1024120:CDS
TTTGGCTCCATAAAATTCTT+GGG 0.352450 7_1:+52634851 None:intergenic
TTTCTACAAGAAATATTAAT+GGG 0.366516 7_1:+52637283 None:intergenic
CAGCTAACAAGATTCGTCTT+TGG 0.369310 7_1:-52633081 Msa1024120:CDS
TGATCTGCAGGAATAATATC+TGG 0.372207 7_1:+52631755 None:intergenic
ATGAAAGCAACTCGAGCTTC+AGG 0.388762 7_1:+52632699 None:intergenic
AATCTAAGGGATACAATAGA+AGG 0.389088 7_1:+52637334 None:intergenic
GCAGTATTCACAGGAATGTT+AGG 0.393518 7_1:-52631914 Msa1024120:CDS
TCAACTCTTTGTCGAACAAA+AGG 0.396746 7_1:+52631666 None:intergenic
TCTGGTTCTGGCGCAAGAAA+AGG 0.398886 7_1:-52631547 Msa1024120:CDS
ATCAAATGCCTTCGAGAAAT+GGG 0.406692 7_1:-52635120 Msa1024120:CDS
CAACTCTTTGTCGAACAAAA+GGG 0.406801 7_1:+52631667 None:intergenic
TGCATCATCACCAGGCATAA+TGG 0.407359 7_1:-52634007 Msa1024120:intron
ACGTTTACTGATCCATTGTA+AGG 0.414214 7_1:+52631508 None:intergenic
CTGAAAATGAGAGGAATTCA+AGG 0.418257 7_1:-52637117 Msa1024120:CDS
CACTGGTACATGGGTATGAT+AGG 0.419410 7_1:+52633827 None:intergenic
TGAACTATCAAGGGTTTCTC+AGG 0.420730 7_1:+52632914 None:intergenic
AAATACAAAATAGATAGAAT+AGG 0.422824 7_1:+52631264 None:intergenic
ATAGTTCATGTTGGACGGCT+TGG 0.424140 7_1:-52632899 Msa1024120:CDS
AATTCAGCTTTCCCCTCCCT+TGG 0.426635 7_1:-52634110 Msa1024120:intron
AAAAGCTGCACGTAATGAAA+TGG 0.426643 7_1:-52631630 Msa1024120:CDS
CTGGTGCCATCTGTTGCCAT+TGG 0.430492 7_1:-52633271 Msa1024120:CDS
TCAGAACGTACCGCTCTCTT+TGG 0.431253 7_1:-52634085 Msa1024120:CDS
GAGAAAGAATCCAAAGAAGT+TGG 0.432970 7_1:+52637479 None:intergenic
ATGCAGCTTATAATGTGATA+TGG 0.434213 7_1:-52631350 Msa1024120:three_prime_UTR
GCAGATCAAGAAGGTAAAAC+AGG 0.441468 7_1:-52631740 Msa1024120:CDS
ATTTGATAAAGTTCTGAAAC+CGG 0.451845 7_1:+52635136 None:intergenic
GTATGATAGGACATGACAAT+TGG 0.454132 7_1:+52633840 None:intergenic
GAGCCAAATTAATAGGATCT+TGG 0.454953 7_1:-52634836 Msa1024120:CDS
ACGAAATGCGATTAAGACTA+AGG 0.456016 7_1:-52633012 Msa1024120:intron
CTGAAACTTACACTGGTACA+TGG 0.458251 7_1:+52633817 None:intergenic
TGGTGCCATCTGTTGCCATT+GGG 0.458535 7_1:-52633270 Msa1024120:CDS
AACAATACAATGCTGCCATC+TGG 0.461214 7_1:-52631565 Msa1024120:CDS
AATGCCTTATAATTTCAATA+GGG 0.461914 7_1:+52631236 None:intergenic
GCATTCATATTCATAAGAAT+CGG 0.463748 7_1:+52637397 None:intergenic
ACAGGTTATCTCTATAATCC+AGG 0.464651 7_1:-52631722 Msa1024120:CDS
AATACAAAATAGATAGAATA+GGG 0.465133 7_1:+52631265 None:intergenic
CCGGCGCGTGCTGCCACCAC+AGG 0.469518 7_1:+52631785 None:intergenic
CCGTCCAACATGAACTATCA+AGG 0.479820 7_1:+52632904 None:intergenic
AGGAACAATCGTACTAAGCT+TGG 0.480255 7_1:+52631438 None:intergenic
TAGTACGATTGTTCCTTGCT+TGG 0.480378 7_1:-52631431 Msa1024120:three_prime_UTR
CGAGTTGCTTTCATCGGAGA+TGG 0.480961 7_1:-52632690 Msa1024120:CDS
CAACAGATGGCACCAGAGTC+AGG 0.483672 7_1:+52633278 None:intergenic
CTATAGTTAACTTGTGGTGA+TGG 0.484123 7_1:+52631479 None:intergenic
CTGGTTCTGGCGCAAGAAAA+GGG 0.485575 7_1:-52631546 Msa1024120:CDS
AAGCAGTCTTCAAGATCCCC+TGG 0.497573 7_1:+52631704 None:intergenic
AACATTCCTGTGAATACTGC+AGG 0.502201 7_1:+52631917 None:intergenic
TGAAGAAGAAGATAAGGAAG+AGG 0.507796 7_1:-52637158 Msa1024120:CDS
TCATGATGAAGAAGAAGATA+AGG 0.508883 7_1:-52637164 Msa1024120:CDS
CATTCATATTCATAAGAATC+GGG 0.512930 7_1:+52637398 None:intergenic
GAGCTAGAGAAAATGTTTGA+AGG 0.513757 7_1:-52631944 Msa1024120:CDS
CCTTCAGAGTCAGAAACACT+TGG 0.519010 7_1:-52631842 Msa1024120:CDS
AATAATATCTGGAATGCCTC+CGG 0.525217 7_1:+52631766 None:intergenic
CCAAATTAATAGGATCTTGG+AGG 0.528912 7_1:-52634833 Msa1024120:intron
GAAAGGGTAATGTGAGTGAA+TGG 0.529042 7_1:+52637501 None:intergenic
ATGGTTGTGACAACGCATAA+AGG 0.529882 7_1:-52634879 Msa1024120:CDS
GATGATGCATGTATTATGTC+AGG 0.531330 7_1:+52634021 None:intergenic
TAGATAGAATAGGGTCATGA+AGG 0.531571 7_1:+52631274 None:intergenic
GGAACAATCGTACTAAGCTT+GGG 0.531998 7_1:+52631439 None:intergenic
TGCAGACCAACCATTATGCC+TGG 0.532076 7_1:+52633997 None:intergenic
CCTTGATAGTTCATGTTGGA+CGG 0.532119 7_1:-52632904 Msa1024120:CDS
CTCTCTCAAGCATATGCTAG+TGG 0.533783 7_1:-52631881 Msa1024120:CDS
CAGAGCAGCTGACCTGACTC+TGG 0.538024 7_1:-52633290 Msa1024120:CDS
GAAGAAGAAGATAAGGAAGA+GGG 0.541074 7_1:-52637157 Msa1024120:CDS
CGTGTGAACGGAATCGTGGA+TGG 0.542069 7_1:+52633032 None:intergenic
CAGGTTATCTCTATAATCCA+GGG 0.542485 7_1:-52631721 Msa1024120:CDS
AGCGGTACGTTCTGATACCA+AGG 0.543963 7_1:+52634093 None:intergenic
TGCCATCTGTTGCCATTGGG+AGG 0.550215 7_1:-52633267 Msa1024120:CDS
CACAGGTATCCCCGAAGACA+TGG 0.550551 7_1:+52631802 None:intergenic
TATAGTTAACTTGTGGTGAT+GGG 0.550671 7_1:+52631480 None:intergenic
GAATAATTTCAGAGGTAGCT+CGG 0.552361 7_1:-52634050 Msa1024120:CDS
GTGGTGGCAGCACGCGCCGG+AGG 0.554010 7_1:-52631782 Msa1024120:CDS
AGAATCCAAAGAAGTTGGAA+AGG 0.556799 7_1:+52637484 None:intergenic
AACTCTTTGTCGAACAAAAG+GGG 0.558837 7_1:+52631668 None:intergenic
TCATCGGAGATGGACCGTAC+AGG 0.559868 7_1:-52632680 Msa1024120:intron
GAATCCAAAGAAGTTGGAAA+GGG 0.562269 7_1:+52637485 None:intergenic
TGAAACTTACACTGGTACAT+GGG 0.562739 7_1:+52633818 None:intergenic
TTGGCTCCATAAAATTCTTG+GGG 0.568506 7_1:+52634852 None:intergenic
CCTGTGGTGGCAGCACGCGC+CGG 0.571301 7_1:-52631785 Msa1024120:CDS
GAAGCTCGAGTTGCTTTCAT+CGG 0.571976 7_1:-52632696 Msa1024120:CDS
AGAAGGGTATGATGATGAAG+TGG 0.577234 7_1:+52637351 None:intergenic
TTCATTTCGAACCTTTCGTG+TGG 0.577756 7_1:+52631586 None:intergenic
CCAAGTGTTTCTGACTCTGA+AGG 0.579198 7_1:+52631842 None:intergenic
AAGATTCGTCTTTGGAACAA+AGG 0.579970 7_1:-52633073 Msa1024120:CDS
TGTGCTTGAAGCCACTAACA+TGG 0.581699 7_1:-52637206 Msa1024120:CDS
TATTATTGAGACCCTTACAA+TGG 0.581845 7_1:-52631520 Msa1024120:CDS
GGTATGCCTGCAGTATTCAC+AGG 0.583017 7_1:-52631923 Msa1024120:CDS
GCCATCTGTTGCCATTGGGA+GGG 0.585852 7_1:-52633266 Msa1024120:CDS
CTTCTTCTACTGAAAATGAG+AGG 0.590922 7_1:-52637126 Msa1024120:CDS
CATCATCTATAGTTAACTTG+TGG 0.591830 7_1:+52631473 None:intergenic
GTATTCACAGGAATGTTAGG+AGG 0.591955 7_1:-52631911 Msa1024120:CDS
AGGACTCACGCAAATGGAGA+AGG 0.595520 7_1:+52637067 None:intergenic
ATTATTCCTGCAGATCAAGA+AGG 0.599930 7_1:-52631749 Msa1024120:CDS
TCCCTCCCAATGGCAACAGA+TGG 0.600891 7_1:+52633265 None:intergenic
TACGTTCTGATACCAAGGGA+GGG 0.601576 7_1:+52634098 None:intergenic
CGTCCAACATGAACTATCAA+GGG 0.605699 7_1:+52632905 None:intergenic
CGTTTACTGATCCATTGTAA+GGG 0.609300 7_1:+52631509 None:intergenic
ATCTAAGGGATACAATAGAA+GGG 0.609792 7_1:+52637335 None:intergenic
CAAGCGGCTAGAGTAACAGC+AGG 0.610811 7_1:-52633238 Msa1024120:intron
CGCTTGAAGATCCCTCCCAA+TGG 0.611728 7_1:+52633255 None:intergenic
TATTCACAGGAATGTTAGGA+GGG 0.613060 7_1:-52631910 Msa1024120:CDS
CCTCATCTCCCATTTCTCGA+AGG 0.616997 7_1:+52635112 None:intergenic
TTAATCGCATTTCGTGTGAA+CGG 0.618791 7_1:+52633020 None:intergenic
AAACCCTTGATAGTTCATGT+TGG 0.620136 7_1:-52632908 Msa1024120:CDS
ATTTCGTGTGAACGGAATCG+TGG 0.620865 7_1:+52633028 None:intergenic
ACGTTCTGATACCAAGGGAG+GGG 0.624386 7_1:+52634099 None:intergenic
TTGGAAGGCAGCCACACGAA+AGG 0.624568 7_1:-52631597 Msa1024120:CDS
GTCATAATAAGTCACCTGTA+CGG 0.625754 7_1:+52632666 None:intergenic
AAAGAGTTGAGAGAAACCAT+AGG 0.627134 7_1:-52631653 Msa1024120:CDS
CCTTCGAGAAATGGGAGATG+AGG 0.627264 7_1:-52635112 Msa1024120:intron
CATGTCTTCGGGGATACCTG+TGG 0.630437 7_1:-52631801 Msa1024120:CDS
TTTCTTGCGCCAGAACCAGA+TGG 0.633203 7_1:+52631550 None:intergenic
GGTATGATGATGAAGTGGAA+AGG 0.636351 7_1:+52637356 None:intergenic
ATATTTCTTGTAGAAAACCA+CGG 0.638873 7_1:-52637276 Msa1024120:CDS
GTGTTAAATCAAACCAAGCA+AGG 0.641545 7_1:+52631418 None:intergenic
CATTGGGAGGGATCTTCAAG+CGG 0.642986 7_1:-52633254 Msa1024120:CDS
TAGTCCAAGAATAATTTCAG+AGG 0.645622 7_1:-52634058 Msa1024120:CDS
ATAATACATGCATCATCACC+AGG 0.646793 7_1:-52634015 Msa1024120:CDS
ATTCACAGGAATGTTAGGAG+GGG 0.648550 7_1:-52631909 Msa1024120:CDS
GTCTTCGGGGATACCTGTGG+TGG 0.652844 7_1:-52631798 Msa1024120:CDS
GGACTAAGTGCCAAAGAGAG+CGG 0.657922 7_1:+52634075 None:intergenic
GTACGTTCTGATACCAAGGG+AGG 0.667883 7_1:+52634097 None:intergenic
GCGGTACGTTCTGATACCAA+GGG 0.688280 7_1:+52634094 None:intergenic
AGGTTATCTCTATAATCCAG+GGG 0.701223 7_1:-52631720 Msa1024120:CDS
GCTTGAAAAGAGCACAACCG+TGG 0.703799 7_1:+52637259 None:intergenic
ACAAAGAGAGCAATTCGACG+AGG 0.751848 7_1:+52637094 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTACAAGAAATATTAAT+GGG + chr7_1:52631456-52631475 None:intergenic 15.0%
!!! TTTTCTACAAGAAATATTAA+TGG + chr7_1:52631457-52631476 None:intergenic 15.0%
!!! TTCTTTAATTTGAATTGTAT+TGG - chr7_1:52631724-52631743 Msa1024120:CDS 15.0%
!!! GATAAAGGAATTTTTTTTAT+CGG - chr7_1:52632204-52632223 Msa1024120:intron 15.0%
!!! ATTTTTCTGTTAAAAGTTTT+AGG - chr7_1:52632694-52632713 Msa1024120:CDS 15.0%
!!! TTTTTTGTTTTCTATGTTAA+AGG - chr7_1:52632721-52632740 Msa1024120:intron 15.0%
!!! GTTGATTTTCATTTAATTTT+AGG - chr7_1:52633687-52633706 Msa1024120:intron 15.0%
!!! AGATTTTCATTGAATATTTT+GGG + chr7_1:52633729-52633748 None:intergenic 15.0%
!! AATCATAAAATCATGATAAT+AGG + chr7_1:52634185-52634204 None:intergenic 15.0%
!!! AAAAGTATTAGTGTAAAATA+TGG + chr7_1:52634584-52634603 None:intergenic 15.0%
!! CAAAATAATATATCTTTCAT+AGG - chr7_1:52635946-52635965 Msa1024120:intron 15.0%
!! AATACAAAATAGATAGAATA+GGG + chr7_1:52637474-52637493 None:intergenic 15.0%
!! AAATACAAAATAGATAGAAT+AGG + chr7_1:52637475-52637494 None:intergenic 15.0%
!! AAAAAAAACAGCACAAAAAT+AGG + chr7_1:52631692-52631711 None:intergenic 20.0%
!!! TAATGAGTTGGATATAAATA+TGG - chr7_1:52632505-52632524 Msa1024120:intron 20.0%
!! TATGTTAAAGGTTTGATATT+TGG - chr7_1:52632733-52632752 Msa1024120:intron 20.0%
!! TATCATATCATATACGTATT+CGG + chr7_1:52632901-52632920 None:intergenic 20.0%
!!! AAATTTCTCATATTTCTATG+CGG + chr7_1:52632925-52632944 None:intergenic 20.0%
!!! CAGATTTTCATTGAATATTT+TGG + chr7_1:52633730-52633749 None:intergenic 20.0%
!! CAAAATATTCAATGAAAATC+TGG - chr7_1:52633728-52633747 Msa1024120:intron 20.0%
!! TATGTTTATTTGTCTCTTAT+AGG - chr7_1:52633832-52633851 Msa1024120:CDS 20.0%
!! CTAAATCCATTAAGATAATA+GGG + chr7_1:52634349-52634368 None:intergenic 20.0%
!! ACTAAATCCATTAAGATAAT+AGG + chr7_1:52634350-52634369 None:intergenic 20.0%
!! TAAGATTAAAAATAAGCTGT+TGG + chr7_1:52635267-52635286 None:intergenic 20.0%
!! GTTTAAATATAAGCATTTCT+CGG - chr7_1:52635575-52635594 Msa1024120:intron 20.0%
!! AATAACGAAAAAATGACAAA+AGG + chr7_1:52635756-52635775 None:intergenic 20.0%
!! ATAAACAATTATGAGTGTTT+GGG - chr7_1:52636295-52636314 Msa1024120:intron 20.0%
!!! ATTAGCTTAAAAGAACTTAT+AGG + chr7_1:52636354-52636373 None:intergenic 20.0%
!!! CTTTTAAGCTAATTTCAATA+AGG - chr7_1:52636361-52636380 Msa1024120:intron 20.0%
!! GAACACAAATTATACTTTAT+AGG - chr7_1:52636400-52636419 Msa1024120:intron 20.0%
!! TTTCTTTGATTATACTTTCT+AGG - chr7_1:52636450-52636469 Msa1024120:intron 20.0%
!! ATTGTTAAATATGAACACTT+CGG - chr7_1:52636728-52636747 Msa1024120:intron 20.0%
!! ATGAAATGGAAAAATTTGAT+TGG - chr7_1:52637120-52637139 Msa1024120:CDS 20.0%
!! CTTTACACTTACAAAAAATT+AGG + chr7_1:52637419-52637438 None:intergenic 20.0%
!! AATGCCTTATAATTTCAATA+GGG + chr7_1:52637503-52637522 None:intergenic 20.0%
!! TAATGCCTTATAATTTCAAT+AGG + chr7_1:52637504-52637523 None:intergenic 20.0%
!! AAAAATGAAGGAACAAGTTT+TGG + chr7_1:52631318-52631337 None:intergenic 25.0%
! CATTCATATTCATAAGAATC+GGG + chr7_1:52631341-52631360 None:intergenic 25.0%
! GCATTCATATTCATAAGAAT+CGG + chr7_1:52631342-52631361 None:intergenic 25.0%
! TGAAAAACGTTGAAATCTAA+GGG + chr7_1:52631418-52631437 None:intergenic 25.0%
! ATATTTCTTGTAGAAAACCA+CGG - chr7_1:52631460-52631479 Msa1024120:exon 25.0%
!!! TGGAATGTAATTTTAGCAAA+AGG - chr7_1:52631989-52632008 Msa1024120:intron 25.0%
!!! AATGTAATTTTAGCAAAAGG+CGG - chr7_1:52631992-52632011 Msa1024120:intron 25.0%
! ATCATATACCATAAGTTACA+CGG - chr7_1:52632046-52632065 Msa1024120:intron 25.0%
! TATTTAAACCGTGTAACTTA+TGG + chr7_1:52632057-52632076 None:intergenic 25.0%
! CAAAATGACACAGAAATATA+AGG - chr7_1:52632097-52632116 Msa1024120:intron 25.0%
! TAAACCATTAAATTCAAGCT+GGG - chr7_1:52632125-52632144 Msa1024120:intron 25.0%
! AAAAATTCCTTTATCTTGAG+TGG + chr7_1:52632199-52632218 None:intergenic 25.0%
!! AGTTTCTCTTATAGTTTTCT+AGG + chr7_1:52632465-52632484 None:intergenic 25.0%
! AGATCTTAAGATTAATGAGT+TGG - chr7_1:52632493-52632512 Msa1024120:intron 25.0%
!!! GTTTGGTTTTAGTGTTTAAT+TGG - chr7_1:52632639-52632658 Msa1024120:intron 25.0%
!!! AGTTTTGTTGTTTCTTAACA+TGG - chr7_1:52632842-52632861 Msa1024120:intron 25.0%
!! GTTGACAAAAGAATGATTTT+AGG + chr7_1:52633168-52633187 None:intergenic 25.0%
!!! AATTTTAGTTTGACCTCAAT+TGG + chr7_1:52633445-52633464 None:intergenic 25.0%
! AATTGAGGTCAAACTAAAAT+TGG - chr7_1:52633444-52633463 Msa1024120:intron 25.0%
!! CTCAACATAAAATTTGTTCT+TGG - chr7_1:52633539-52633558 Msa1024120:intron 25.0%
!!! ATTTGATAAAGTTCTGAAAC+CGG + chr7_1:52633603-52633622 None:intergenic 25.0%
!! TTTTATGGAGCCAAATTAAT+AGG - chr7_1:52633893-52633912 Msa1024120:intron 25.0%
! GACATCATTATTTGTCTTTA+TGG + chr7_1:52634274-52634293 None:intergenic 25.0%
! AAGATTCCCTATTATCTTAA+TGG - chr7_1:52634340-52634359 Msa1024120:intron 25.0%
!! TCTAAAACCACATATTTGAT+TGG - chr7_1:52634469-52634488 Msa1024120:intron 25.0%
! TTGTTCGAAAATATGTGAAT+AGG + chr7_1:52634552-52634571 None:intergenic 25.0%
! TGAATTTCCAATTTGTGTTT+GGG + chr7_1:52634612-52634631 None:intergenic 25.0%
!! TTATGGTGTTAATAAGCATA+AGG - chr7_1:52634780-52634799 Msa1024120:intron 25.0%
! ATTTACCAGTTTAGATAACA+CGG - chr7_1:52634966-52634985 Msa1024120:intron 25.0%
! AAATTATGTACTGCTTATGT+TGG - chr7_1:52635046-52635065 Msa1024120:intron 25.0%
! CTTTCTATTAATCAACCTTA+GGG + chr7_1:52635122-52635141 None:intergenic 25.0%
!!! TTGCTTACTTTTTTCCTATA+TGG - chr7_1:52635367-52635386 Msa1024120:intron 25.0%
!! ACAAATATTTGAGACCATAT+AGG + chr7_1:52635384-52635403 None:intergenic 25.0%
!! TGTGAGCATATCATAAATTT+TGG - chr7_1:52635401-52635420 Msa1024120:intron 25.0%
! ATATAAAACGACTAGATAAG+AGG + chr7_1:52635536-52635555 None:intergenic 25.0%
!!! AAGAGTTTAGGTTTTATCAA+AGG - chr7_1:52635867-52635886 Msa1024120:intron 25.0%
!!! AGAGTTTAGGTTTTATCAAA+GGG - chr7_1:52635868-52635887 Msa1024120:intron 25.0%
! TTCCATCTCAAATCATATAA+TGG - chr7_1:52636180-52636199 Msa1024120:intron 25.0%
!! TTTCATGTTTAGAACATGTT+TGG - chr7_1:52636233-52636252 Msa1024120:intron 25.0%
! CATAAACAATTATGAGTGTT+TGG - chr7_1:52636294-52636313 Msa1024120:intron 25.0%
! ATTTGTGTTCATAAGCTATT+TGG + chr7_1:52636390-52636409 None:intergenic 25.0%
! GGATAAACAACTTAATTAAG+CGG + chr7_1:52636579-52636598 None:intergenic 25.0%
! AAAATATTGAGAATGAGATG+TGG + chr7_1:52636668-52636687 None:intergenic 25.0%
!! CAATTTTCATTATCTAGAGA+GGG + chr7_1:52636712-52636731 None:intergenic 25.0%
!! ACAATTTTCATTATCTAGAG+AGG + chr7_1:52636713-52636732 None:intergenic 25.0%
! AATGGAAAAATTTGATTGGA+AGG - chr7_1:52637124-52637143 Msa1024120:CDS 25.0%
! ACTTCCCTATTGAAATTATA+AGG - chr7_1:52637496-52637515 Msa1024120:five_prime_UTR 25.0%
ATAAGAATCGGGAAAAATGA+AGG + chr7_1:52631330-52631349 None:intergenic 30.0%
ATCTAAGGGATACAATAGAA+GGG + chr7_1:52631404-52631423 None:intergenic 30.0%
AATCTAAGGGATACAATAGA+AGG + chr7_1:52631405-52631424 None:intergenic 30.0%
GTGAAAAACGTTGAAATCTA+AGG + chr7_1:52631419-52631438 None:intergenic 30.0%
!!! TTAATGGGTTTTGCTTGTAA+TGG + chr7_1:52631441-52631460 None:intergenic 30.0%
TCATGATGAAGAAGAAGATA+AGG - chr7_1:52631572-52631591 Msa1024120:CDS 30.0%
! GGCTAATGCTTTATTGAATT+CGG - chr7_1:52631745-52631764 Msa1024120:CDS 30.0%
! GCTAATGCTTTATTGAATTC+GGG - chr7_1:52631746-52631765 Msa1024120:CDS 30.0%
CAATGGTAAGAGTTTATACA+GGG - chr7_1:52631906-52631925 Msa1024120:CDS 30.0%
AATGACACAGAAATATAAGG+AGG - chr7_1:52632100-52632119 Msa1024120:intron 30.0%
GTAAACCATTAAATTCAAGC+TGG - chr7_1:52632124-52632143 Msa1024120:intron 30.0%
CGTATCAAATGAAACATCTA+AGG + chr7_1:52632170-52632189 None:intergenic 30.0%
AAGCAATTGAATTGTCTTGT+TGG - chr7_1:52632617-52632636 Msa1024120:intron 30.0%
! ATTGAATTGTCTTGTTGGTT+TGG - chr7_1:52632622-52632641 Msa1024120:intron 30.0%
CAAAAGACAGAATTGATGTT+TGG - chr7_1:52632990-52633009 Msa1024120:intron 30.0%
GATCTTAGAATTATACACCT+TGG - chr7_1:52633050-52633069 Msa1024120:CDS 30.0%
ATGTATCAGGATACAAAAAC+CGG - chr7_1:52633581-52633600 Msa1024120:intron 30.0%
TATTTGTCTCTTATAGGTGA+TGG - chr7_1:52633838-52633857 Msa1024120:CDS 30.0%
! TTTGGCTCCATAAAATTCTT+GGG + chr7_1:52633888-52633907 None:intergenic 30.0%
! ATTTGGCTCCATAAAATTCT+TGG + chr7_1:52633889-52633908 None:intergenic 30.0%
GTTATAAGCAATTGACAGTT+AGG + chr7_1:52634092-52634111 None:intergenic 30.0%
TCTGATTACAATGTAGAATG+TGG - chr7_1:52634213-52634232 Msa1024120:intron 30.0%
TGTGTGTTTGAATTACACAA+TGG - chr7_1:52634294-52634313 Msa1024120:intron 30.0%
ATCACAACCAATCAAATATG+TGG + chr7_1:52634479-52634498 None:intergenic 30.0%
! GAATAGGCAAACCAAATTTT+GGG + chr7_1:52634536-52634555 None:intergenic 30.0%
! TGAATAGGCAAACCAAATTT+TGG + chr7_1:52634537-52634556 None:intergenic 30.0%
TTCATTTCCCAAACACAAAT+TGG - chr7_1:52634602-52634621 Msa1024120:intron 30.0%
CTGAATTTCCAATTTGTGTT+TGG + chr7_1:52634613-52634632 None:intergenic 30.0%
TAGTCCAAGAATAATTTCAG+AGG - chr7_1:52634678-52634697 Msa1024120:intron 30.0%
!!! ACTGATACTACCTTATTTTC+AGG - chr7_1:52634835-52634854 Msa1024120:CDS 30.0%
!!! CTACCTTATTTTCAGGTTTT+TGG - chr7_1:52634842-52634861 Msa1024120:CDS 30.0%
GTTGTACTTTATAAACCCTA+AGG - chr7_1:52635104-52635123 Msa1024120:intron 30.0%
CCTTTCTATTAATCAACCTT+AGG + chr7_1:52635123-52635142 None:intergenic 30.0%
! CCTAAGGTTGATTAATAGAA+AGG - chr7_1:52635120-52635139 Msa1024120:CDS 30.0%
TGATTAATAGAAAGGTGATG+CGG - chr7_1:52635128-52635147 Msa1024120:CDS 30.0%
! TATCTTTTTACCTTTGAACC+AGG - chr7_1:52635233-52635252 Msa1024120:intron 30.0%
TTCCAAGATATACCTTTAGT+TGG - chr7_1:52635302-52635321 Msa1024120:intron 30.0%
! TCGTTTTATATATGCTTAGC+TGG - chr7_1:52635545-52635564 Msa1024120:intron 30.0%
! TATATGATTTGAGATGGAAG+AGG + chr7_1:52636179-52636198 None:intergenic 30.0%
!! TTCCATTTTATGATGGTGAT+TGG + chr7_1:52636206-52636225 None:intergenic 30.0%
! CGAGAAATTCCATTTTATGA+TGG + chr7_1:52636213-52636232 None:intergenic 30.0%
TGACTTCTGAACAGTTTATT+TGG - chr7_1:52636258-52636277 Msa1024120:intron 30.0%
GACTTCTGAACAGTTTATTT+GGG - chr7_1:52636259-52636278 Msa1024120:intron 30.0%
CAACTTAATTAAGCGGTTAT+CGG + chr7_1:52636572-52636591 None:intergenic 30.0%
ATCCTCAAAAGAAAGAGAAA+GGG + chr7_1:52636609-52636628 None:intergenic 30.0%
AATCCTCAAAAGAAAGAGAA+AGG + chr7_1:52636610-52636629 None:intergenic 30.0%
!! TTCTCTTTCTTTTGAGGATT+TGG - chr7_1:52636610-52636629 Msa1024120:intron 30.0%
TGATGATTTCTTTAACTACC+AGG - chr7_1:52636766-52636785 Msa1024120:intron 30.0%
GATGATTTCTTTAACTACCA+GGG - chr7_1:52636767-52636786 Msa1024120:intron 30.0%
TATTATTGAGACCCTTACAA+TGG - chr7_1:52637216-52637235 Msa1024120:CDS 30.0%
!! TATAGTTAACTTGTGGTGAT+GGG + chr7_1:52637259-52637278 None:intergenic 30.0%
! CATCATCTATAGTTAACTTG+TGG + chr7_1:52637266-52637285 None:intergenic 30.0%
ATGCAGCTTATAATGTGATA+TGG - chr7_1:52637386-52637405 Msa1024120:CDS 30.0%
ATTACCCTTTCCAACTTCTT+TGG - chr7_1:52631247-52631266 Msa1024120:three_prime_UTR 35.0%
GAATCCAAAGAAGTTGGAAA+GGG + chr7_1:52631254-52631273 None:intergenic 35.0%
AGAATCCAAAGAAGTTGGAA+AGG + chr7_1:52631255-52631274 None:intergenic 35.0%
GAGAAAGAATCCAAAGAAGT+TGG + chr7_1:52631260-52631279 None:intergenic 35.0%
TTCTGCTTTATCCATGTTAG+TGG + chr7_1:52631544-52631563 None:intergenic 35.0%
TGAAGAAGAAGATAAGGAAG+AGG - chr7_1:52631578-52631597 Msa1024120:CDS 35.0%
GAAGAAGAAGATAAGGAAGA+GGG - chr7_1:52631579-52631598 Msa1024120:CDS 35.0%
CTTCTTCTACTGAAAATGAG+AGG - chr7_1:52631610-52631629 Msa1024120:CDS 35.0%
CTGAAAATGAGAGGAATTCA+AGG - chr7_1:52631619-52631638 Msa1024120:CDS 35.0%
AAAAATAGGACTCACGCAAA+TGG + chr7_1:52631678-52631697 None:intergenic 35.0%
! AACTCCCATTGTGATTGTTT+TGG - chr7_1:52631794-52631813 Msa1024120:CDS 35.0%
GAAGCCAAAACAATCACAAT+GGG + chr7_1:52631801-52631820 None:intergenic 35.0%
AGAAGCCAAAACAATCACAA+TGG + chr7_1:52631802-52631821 None:intergenic 35.0%
CCTGTATAAACTCTTACCAT+TGG + chr7_1:52631908-52631927 None:intergenic 35.0%
CCAATGGTAAGAGTTTATAC+AGG - chr7_1:52631905-52631924 Msa1024120:CDS 35.0%
AAGAGTTTATACAGGGAATG+AGG - chr7_1:52631913-52631932 Msa1024120:CDS 35.0%
CAGAAGTAAGACAAAGTACA+TGG - chr7_1:52631969-52631988 Msa1024120:intron 35.0%
!! GAAAGTACCACTCAAGATAA+AGG - chr7_1:52632189-52632208 Msa1024120:intron 35.0%
CTACTACGCACAATTTATGT+TGG + chr7_1:52632283-52632302 None:intergenic 35.0%
TGCACCTATAGAAGAAAAGA+AGG - chr7_1:52632331-52632350 Msa1024120:intron 35.0%
ACCTATAGAAGAAAAGAAGG+TGG - chr7_1:52632334-52632353 Msa1024120:intron 35.0%
! TCCACCTTCTTTTCTTCTAT+AGG + chr7_1:52632338-52632357 None:intergenic 35.0%
AAGGAGATTCAAATCACAAG+AGG - chr7_1:52632429-52632448 Msa1024120:intron 35.0%
ATTCAAATCACAAGAGGTAG+AGG - chr7_1:52632435-52632454 Msa1024120:intron 35.0%
! TACTTTCCATGATTAGCTGT+TGG - chr7_1:52632797-52632816 Msa1024120:intron 35.0%
! GATTTTCCAACAGCTAATCA+TGG + chr7_1:52632806-52632825 None:intergenic 35.0%
GGAAAGTGAGCATAAATAGT+TGG - chr7_1:52633011-52633030 Msa1024120:intron 35.0%
TTGTGCATACTAACAGCTTT+AGG + chr7_1:52633108-52633127 None:intergenic 35.0%
TGCACAAATTAATCTCCGAA+TGG - chr7_1:52633121-52633140 Msa1024120:intron 35.0%
GCACAAATTAATCTCCGAAT+GGG - chr7_1:52633122-52633141 Msa1024120:intron 35.0%
!! GTGATAACTTGTTTCATCAC+TGG + chr7_1:52633361-52633380 None:intergenic 35.0%
CCTGATACATATCTGCAAAA+CGG + chr7_1:52633571-52633590 None:intergenic 35.0%
TATCAAATGCCTTCGAGAAA+TGG - chr7_1:52633615-52633634 Msa1024120:intron 35.0%
ATCAAATGCCTTCGAGAAAT+GGG - chr7_1:52633616-52633635 Msa1024120:intron 35.0%
TTGGCTCCATAAAATTCTTG+GGG + chr7_1:52633887-52633906 None:intergenic 35.0%
GAGCCAAATTAATAGGATCT+TGG - chr7_1:52633900-52633919 Msa1024120:intron 35.0%
CCTCCAAGATCCTATTAATT+TGG + chr7_1:52633906-52633925 None:intergenic 35.0%
CCAAATTAATAGGATCTTGG+AGG - chr7_1:52633903-52633922 Msa1024120:intron 35.0%
CAGTAAGTACTATGTACTTG+CGG - chr7_1:52634155-52634174 Msa1024120:intron 35.0%
GTGTTTGAATTACACAATGG+TGG - chr7_1:52634297-52634316 Msa1024120:intron 35.0%
ACTCACGCATTAAAAACGTT+TGG - chr7_1:52634429-52634448 Msa1024120:intron 35.0%
GCTCTTCAATACCCAAAATT+TGG - chr7_1:52634522-52634541 Msa1024120:intron 35.0%
!! GCTACCTCTGAAATTATTCT+TGG + chr7_1:52634685-52634704 None:intergenic 35.0%
GAATAATTTCAGAGGTAGCT+CGG - chr7_1:52634686-52634705 Msa1024120:intron 35.0%
GATGATGCATGTATTATGTC+AGG + chr7_1:52634718-52634737 None:intergenic 35.0%
ATAATACATGCATCATCACC+AGG - chr7_1:52634721-52634740 Msa1024120:intron 35.0%
GCACCAAAAACCTGAAAATA+AGG + chr7_1:52634848-52634867 None:intergenic 35.0%
GTATGATAGGACATGACAAT+TGG + chr7_1:52634899-52634918 None:intergenic 35.0%
TGAAACTTACACTGGTACAT+GGG + chr7_1:52634921-52634940 None:intergenic 35.0%
AATCTGACTGAAACTTACAC+TGG + chr7_1:52634929-52634948 None:intergenic 35.0%
!! TATGTTGGAAGTGTTTGACA+TGG - chr7_1:52635061-52635080 Msa1024120:intron 35.0%
TGATATTTGATCACGGAGTT+CGG + chr7_1:52635187-52635206 None:intergenic 35.0%
GGTATATCTTGGAATGTATC+TGG + chr7_1:52635296-52635315 None:intergenic 35.0%
! AGCCAACTAAAGGTATATCT+TGG + chr7_1:52635307-52635326 None:intergenic 35.0%
!! CAATTTTGCTGCATTGACAA+AGG + chr7_1:52635605-52635624 None:intergenic 35.0%
CTTTGTCAATGCAGCAAAAT+TGG - chr7_1:52635603-52635622 Msa1024120:intron 35.0%
!! AAGATTCGTCTTTGGAACAA+AGG - chr7_1:52635663-52635682 Msa1024120:intron 35.0%
TTAATCGCATTTCGTGTGAA+CGG + chr7_1:52635719-52635738 None:intergenic 35.0%
ACGAAATGCGATTAAGACTA+AGG - chr7_1:52635724-52635743 Msa1024120:intron 35.0%
! CAGTTTTCATCTTACAGCAA+CGG - chr7_1:52635795-52635814 Msa1024120:intron 35.0%
! AAACCCTTGATAGTTCATGT+TGG - chr7_1:52635828-52635847 Msa1024120:intron 35.0%
CTTGGAGTTGAAAAGAGTTT+AGG - chr7_1:52635855-52635874 Msa1024120:intron 35.0%
GTCATAATAAGTCACCTGTA+CGG + chr7_1:52636073-52636092 None:intergenic 35.0%
ATATCTGTTCCAGTTGTGTA+TGG - chr7_1:52636107-52636126 Msa1024120:intron 35.0%
!! GTATGGCAGCTTTTAACTAA+TGG - chr7_1:52636124-52636143 Msa1024120:intron 35.0%
GGCCATTATATGATTTGAGA+TGG + chr7_1:52636185-52636204 None:intergenic 35.0%
!! TCTTTCTTTTGAGGATTTGG+AGG - chr7_1:52636613-52636632 Msa1024120:intron 35.0%
GAGCTAGAGAAAATGTTTGA+AGG - chr7_1:52636792-52636811 Msa1024120:intron 35.0%
TATTCACAGGAATGTTAGGA+GGG - chr7_1:52636826-52636845 Msa1024120:intron 35.0%
! AATAATATCTGGAATGCCTC+CGG + chr7_1:52636973-52636992 None:intergenic 35.0%
TGATCTGCAGGAATAATATC+TGG + chr7_1:52636984-52637003 None:intergenic 35.0%
ATTATTCCTGCAGATCAAGA+AGG - chr7_1:52636987-52637006 Msa1024120:intron 35.0%
ACAGGTTATCTCTATAATCC+AGG - chr7_1:52637014-52637033 Msa1024120:intron 35.0%
CAGGTTATCTCTATAATCCA+GGG - chr7_1:52637015-52637034 Msa1024120:intron 35.0%
AGGTTATCTCTATAATCCAG+GGG - chr7_1:52637016-52637035 Msa1024120:intron 35.0%
AACTCTTTGTCGAACAAAAG+GGG + chr7_1:52637071-52637090 None:intergenic 35.0%
CAACTCTTTGTCGAACAAAA+GGG + chr7_1:52637072-52637091 None:intergenic 35.0%
TCAACTCTTTGTCGAACAAA+AGG + chr7_1:52637073-52637092 None:intergenic 35.0%
AAAGAGTTGAGAGAAACCAT+AGG - chr7_1:52637083-52637102 Msa1024120:CDS 35.0%
AAAAGCTGCACGTAATGAAA+TGG - chr7_1:52637106-52637125 Msa1024120:CDS 35.0%
CGTTTACTGATCCATTGTAA+GGG + chr7_1:52637230-52637249 None:intergenic 35.0%
ACGTTTACTGATCCATTGTA+AGG + chr7_1:52637231-52637250 None:intergenic 35.0%
!! CTATAGTTAACTTGTGGTGA+TGG + chr7_1:52637260-52637279 None:intergenic 35.0%
GTGTTAAATCAAACCAAGCA+AGG + chr7_1:52637321-52637340 None:intergenic 35.0%
AATAGGGTCATGAAGGATTT+AGG + chr7_1:52637458-52637477 None:intergenic 35.0%
TAGATAGAATAGGGTCATGA+AGG + chr7_1:52637465-52637484 None:intergenic 35.0%
GAAAGGGTAATGTGAGTGAA+TGG + chr7_1:52631238-52631257 None:intergenic 40.0%
! GGTATGATGATGAAGTGGAA+AGG + chr7_1:52631383-52631402 None:intergenic 40.0%
! AGAAGGGTATGATGATGAAG+TGG + chr7_1:52631388-52631407 None:intergenic 40.0%
!! TAGTGTTGACTTGATAGCGT+TGG + chr7_1:52631852-52631871 None:intergenic 40.0%
CAAGTCAACACTATAACCAG+TGG - chr7_1:52631859-52631878 Msa1024120:CDS 40.0%
TAACCAGTGGTGTAATGTCT+AGG - chr7_1:52631872-52631891 Msa1024120:CDS 40.0%
TTTCCTAGACATTACACCAC+TGG + chr7_1:52631878-52631897 None:intergenic 40.0%
! TCTAGGAAAGTGTAGTCCAA+TGG - chr7_1:52631889-52631908 Msa1024120:CDS 40.0%
TTGTCTTACTTCTGCTCAGA+GGG + chr7_1:52631963-52631982 None:intergenic 40.0%
TTTGTCTTACTTCTGCTCAG+AGG + chr7_1:52631964-52631983 None:intergenic 40.0%
TTACACCTCTAAGCTAGGAA+CGG + chr7_1:52632019-52632038 None:intergenic 40.0%
TCAACTTACACCTCTAAGCT+AGG + chr7_1:52632024-52632043 None:intergenic 40.0%
ACCATTAAATTCAAGCTGGG+TGG - chr7_1:52632128-52632147 Msa1024120:intron 40.0%
ACCACCCAGCTTGAATTTAA+TGG + chr7_1:52632132-52632151 None:intergenic 40.0%
TTCAAGCTGGGTGGTTTAAA+TGG - chr7_1:52632137-52632156 Msa1024120:intron 40.0%
TTATCGGACATCTGTAAGAC+TGG - chr7_1:52632220-52632239 Msa1024120:intron 40.0%
AATTGTGCGTAGTAGAGATG+AGG - chr7_1:52632288-52632307 Msa1024120:intron 40.0%
TAGTAGAGATGAGGATGTTG+CGG - chr7_1:52632297-52632316 Msa1024120:intron 40.0%
AGGATGTTGCGGTAAGATTA+GGG - chr7_1:52632308-52632327 Msa1024120:intron 40.0%
AGAAGGTGGAAACTAGACTT+AGG - chr7_1:52632348-52632367 Msa1024120:intron 40.0%
AAGGAGAGTAGATCAGAAGA+AGG - chr7_1:52632410-52632429 Msa1024120:intron 40.0%
TTTGTTTGCTTAGCAGTGTG+TGG - chr7_1:52632768-52632787 Msa1024120:intron 40.0%
! TACACCTTGGTCTTTGAAAG+TGG - chr7_1:52633063-52633082 Msa1024120:CDS 40.0%
GAATGTGAAGTTGACCCATT+CGG + chr7_1:52633139-52633158 None:intergenic 40.0%
TCTTTACTAATCCACCGTTC+GGG + chr7_1:52633279-52633298 None:intergenic 40.0%
GTCTTTACTAATCCACCGTT+CGG + chr7_1:52633280-52633299 None:intergenic 40.0%
! GGATTAGTAAAGACGAAGGA+TGG - chr7_1:52633286-52633305 Msa1024120:CDS 40.0%
TCTGCATTGCATTCCAATTG+AGG - chr7_1:52633429-52633448 Msa1024120:intron 40.0%
! CCGTTTTGCAGATATGTATC+AGG - chr7_1:52633568-52633587 Msa1024120:intron 40.0%
ATGGTTGTGACAACGCATAA+AGG - chr7_1:52633857-52633876 Msa1024120:CDS 40.0%
! GGAGTTCCCCAAGAATTTTA+TGG - chr7_1:52633878-52633897 Msa1024120:CDS 40.0%
CGCAAGTACATAGTACTTAC+TGG + chr7_1:52634157-52634176 None:intergenic 40.0%
CTGAAACTTACACTGGTACA+TGG + chr7_1:52634922-52634941 None:intergenic 40.0%
AAGAGCCGTGTTATCTAAAC+TGG + chr7_1:52634974-52634993 None:intergenic 40.0%
CAACAAGATGATGTCTGATC+TGG - chr7_1:52635015-52635034 Msa1024120:intron 40.0%
GTACTTATGACCAACCACAT+CGG + chr7_1:52635337-52635356 None:intergenic 40.0%
TGTCAATGCAGCAAAATTGG+TGG - chr7_1:52635606-52635625 Msa1024120:intron 40.0%
CAAAGACGAATCTTGTTAGC+TGG + chr7_1:52635657-52635676 None:intergenic 40.0%
CAGCTAACAAGATTCGTCTT+TGG - chr7_1:52635655-52635674 Msa1024120:intron 40.0%
TGAACTATCAAGGGTTTCTC+AGG + chr7_1:52635825-52635844 None:intergenic 40.0%
CGTCCAACATGAACTATCAA+GGG + chr7_1:52635834-52635853 None:intergenic 40.0%
! CCTTGATAGTTCATGTTGGA+CGG - chr7_1:52635832-52635851 Msa1024120:intron 40.0%
TGTTTGACACCTGAACCAAA+TGG - chr7_1:52635990-52636009 Msa1024120:intron 40.0%
!! CTGAACCAAATGGTTTTGCA+GGG - chr7_1:52636000-52636019 Msa1024120:intron 40.0%
TAAAAGCTGCCATACACAAC+TGG + chr7_1:52636119-52636138 None:intergenic 40.0%
GGCCAATCACCATCATAAAA+TGG - chr7_1:52636201-52636220 Msa1024120:intron 40.0%
! TGCCCTTTCTCTTTCTTTTG+AGG - chr7_1:52636604-52636623 Msa1024120:intron 40.0%
GATTTCTTTAACTACCAGGG+AGG - chr7_1:52636770-52636789 Msa1024120:intron 40.0%
AACATTCCTGTGAATACTGC+AGG + chr7_1:52636822-52636841 None:intergenic 40.0%
GCAGTATTCACAGGAATGTT+AGG - chr7_1:52636822-52636841 Msa1024120:intron 40.0%
GTATTCACAGGAATGTTAGG+AGG - chr7_1:52636825-52636844 Msa1024120:intron 40.0%
ATTCACAGGAATGTTAGGAG+GGG - chr7_1:52636827-52636846 Msa1024120:intron 40.0%
! AACACTTGGCTTCGTTGTTT+TGG - chr7_1:52636908-52636927 Msa1024120:intron 40.0%
! GTTTTACCTTCTTGATCTGC+AGG + chr7_1:52636996-52637015 None:intergenic 40.0%
GCAGATCAAGAAGGTAAAAC+AGG - chr7_1:52636996-52637015 Msa1024120:intron 40.0%
! ATTACGTGCAGCTTTTCCTA+TGG + chr7_1:52637102-52637121 None:intergenic 40.0%
TTCATTTCGAACCTTTCGTG+TGG + chr7_1:52637153-52637172 None:intergenic 40.0%
AACAATACAATGCTGCCATC+TGG - chr7_1:52637171-52637190 Msa1024120:CDS 40.0%
GGAACAATCGTACTAAGCTT+GGG + chr7_1:52637300-52637319 None:intergenic 40.0%
AGGAACAATCGTACTAAGCT+TGG + chr7_1:52637301-52637320 None:intergenic 40.0%
TAGTACGATTGTTCCTTGCT+TGG - chr7_1:52637305-52637324 Msa1024120:CDS 40.0%
TGTGCTTGAAGCCACTAACA+TGG - chr7_1:52631530-52631549 Msa1024120:CDS 45.0%
ACAAAGAGAGCAATTCGACG+AGG + chr7_1:52631645-52631664 None:intergenic 45.0%
AAGCTGGGTGGTTTAAATGG+AGG - chr7_1:52632140-52632159 Msa1024120:intron 45.0%
GAGGATGTTGCGGTAAGATT+AGG - chr7_1:52632307-52632326 Msa1024120:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr7_1:52632574-52632593 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr7_1:52632575-52632594 None:intergenic 45.0%
!! GTTGCCACTTTCAAAGACCA+AGG + chr7_1:52633070-52633089 None:intergenic 45.0%
AGTGGCAACATGAGTTGCTT+TGG - chr7_1:52633081-52633100 Msa1024120:CDS 45.0%
!! CGGTGGATTAGTAAAGACGA+AGG - chr7_1:52633282-52633301 Msa1024120:CDS 45.0%
! AGACGAAGGATGGATTTGTG+AGG - chr7_1:52633296-52633315 Msa1024120:intron 45.0%
! GAAGGATGGATTTGTGAGGT+CGG - chr7_1:52633300-52633319 Msa1024120:intron 45.0%
TACGTTCTGATACCAAGGGA+GGG + chr7_1:52634641-52634660 None:intergenic 45.0%
TGCATCATCACCAGGCATAA+TGG - chr7_1:52634729-52634748 Msa1024120:intron 45.0%
TCATCACCAGGCATAATGGT+TGG - chr7_1:52634733-52634752 Msa1024120:intron 45.0%
CACTGGTACATGGGTATGAT+AGG + chr7_1:52634912-52634931 None:intergenic 45.0%
CGGTTTCACTAGCCAACTAA+AGG + chr7_1:52635317-52635336 None:intergenic 45.0%
ATTTCGTGTGAACGGAATCG+TGG + chr7_1:52635711-52635730 None:intergenic 45.0%
CCGTCCAACATGAACTATCA+AGG + chr7_1:52635835-52635854 None:intergenic 45.0%
ATAGTTCATGTTGGACGGCT+TGG - chr7_1:52635837-52635856 Msa1024120:intron 45.0%
! CCTGCAAAACCATTTGGTTC+AGG + chr7_1:52636002-52636021 None:intergenic 45.0%
!! CCTGAACCAAATGGTTTTGC+AGG - chr7_1:52635999-52636018 Msa1024120:intron 45.0%
CATGACCCTGCAAAACCATT+TGG + chr7_1:52636008-52636027 None:intergenic 45.0%
!! CAAATGGTTTTGCAGGGTCA+TGG - chr7_1:52636006-52636025 Msa1024120:intron 45.0%
ATGAAAGCAACTCGAGCTTC+AGG + chr7_1:52636040-52636059 None:intergenic 45.0%
! GAAGCTCGAGTTGCTTTCAT+CGG - chr7_1:52636040-52636059 Msa1024120:intron 45.0%
! AGAAAGAGAAAGGGCATGCT+TGG + chr7_1:52636600-52636619 None:intergenic 45.0%
GGACTGAAATCTCTAGACAG+AGG + chr7_1:52636647-52636666 None:intergenic 45.0%
CTCTCTCAAGCATATGCTAG+TGG - chr7_1:52636855-52636874 Msa1024120:intron 45.0%
! CCAAGTGTTTCTGACTCTGA+AGG + chr7_1:52636897-52636916 None:intergenic 45.0%
CCTTCAGAGTCAGAAACACT+TGG - chr7_1:52636894-52636913 Msa1024120:intron 45.0%
!!! ACTTGGCTTCGTTGTTTTGG+AGG - chr7_1:52636911-52636930 Msa1024120:intron 45.0%
!!! TGTTTTGGAGGCCATGTCTT+CGG - chr7_1:52636923-52636942 Msa1024120:intron 45.0%
!! TTCTTATATTTATTAAATTA+TGG - chr7_1:52634763-52634782 Msa1024120:intron 5.0%
! GCTTGAAAAGAGCACAACCG+TGG + chr7_1:52631480-52631499 None:intergenic 50.0%
AGGACTCACGCAAATGGAGA+AGG + chr7_1:52631672-52631691 None:intergenic 50.0%
CTGGGTGGTTTAAATGGAGG+AGG - chr7_1:52632143-52632162 Msa1024120:intron 50.0%
GCATGTAGAGAGAAGACCCA+CGG - chr7_1:52632379-52632398 Msa1024120:intron 50.0%
GGTCGGCTACATGGATCAAA+CGG + chr7_1:52632553-52632572 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr7_1:52632570-52632589 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr7_1:52632576-52632595 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr7_1:52632573-52632592 Msa1024120:intron 50.0%
TCGGGCAAGTAGGTAACACA+TGG + chr7_1:52633261-52633280 None:intergenic 50.0%
GTGTTACCTACTTGCCCGAA+CGG - chr7_1:52633262-52633281 Msa1024120:CDS 50.0%
CCTCATCTCCCATTTCTCGA+AGG + chr7_1:52633627-52633646 None:intergenic 50.0%
CCTTCGAGAAATGGGAGATG+AGG - chr7_1:52633624-52633643 Msa1024120:intron 50.0%
AATTCAGCTTTCCCCTCCCT+TGG - chr7_1:52634626-52634645 Msa1024120:intron 50.0%
ACGTTCTGATACCAAGGGAG+GGG + chr7_1:52634640-52634659 None:intergenic 50.0%
GTACGTTCTGATACCAAGGG+AGG + chr7_1:52634642-52634661 None:intergenic 50.0%
GCGGTACGTTCTGATACCAA+GGG + chr7_1:52634645-52634664 None:intergenic 50.0%
AGCGGTACGTTCTGATACCA+AGG + chr7_1:52634646-52634665 None:intergenic 50.0%
TCAGAACGTACCGCTCTCTT+TGG - chr7_1:52634651-52634670 Msa1024120:intron 50.0%
GGACTAAGTGCCAAAGAGAG+CGG + chr7_1:52634664-52634683 None:intergenic 50.0%
TGCAGACCAACCATTATGCC+TGG + chr7_1:52634742-52634761 None:intergenic 50.0%
GTCGGAGACATAGACACACT+TGG - chr7_1:52635161-52635180 Msa1024120:intron 50.0%
GGAACAGCAACCTGGTTCAA+AGG + chr7_1:52635246-52635265 None:intergenic 50.0%
AAGCTGTTGGAACAGCAACC+TGG + chr7_1:52635254-52635273 None:intergenic 50.0%
GTTGGCTAGTGAAACCGATG+TGG - chr7_1:52635320-52635339 Msa1024120:intron 50.0%
GCTAGTGAAACCGATGTGGT+TGG - chr7_1:52635324-52635343 Msa1024120:intron 50.0%
!! TGGTGCCATCTGTTGCCATT+GGG - chr7_1:52635466-52635485 Msa1024120:intron 50.0%
CATTGGGAGGGATCTTCAAG+CGG - chr7_1:52635482-52635501 Msa1024120:intron 50.0%
! CGAGTTGCTTTCATCGGAGA+TGG - chr7_1:52636046-52636065 Msa1024120:intron 50.0%
!! CATTTTCTCTAGCTCCTCCC+TGG + chr7_1:52636787-52636806 None:intergenic 50.0%
GGTATGCCTGCAGTATTCAC+AGG - chr7_1:52636813-52636832 Msa1024120:intron 50.0%
!!! GTTTTGGAGGCCATGTCTTC+GGG - chr7_1:52636924-52636943 Msa1024120:intron 50.0%
!! TTTTGGAGGCCATGTCTTCG+GGG - chr7_1:52636925-52636944 Msa1024120:intron 50.0%
AAGCAGTCTTCAAGATCCCC+TGG + chr7_1:52637035-52637054 None:intergenic 50.0%
! ACAATGCTGCCATCTGGTTC+TGG - chr7_1:52637177-52637196 Msa1024120:CDS 50.0%
TTTCTTGCGCCAGAACCAGA+TGG + chr7_1:52637189-52637208 None:intergenic 50.0%
!! TCTGGTTCTGGCGCAAGAAA+AGG - chr7_1:52637189-52637208 Msa1024120:CDS 50.0%
!! CTGGTTCTGGCGCAAGAAAA+GGG - chr7_1:52637190-52637209 Msa1024120:CDS 50.0%
! AAGACCCACGGACTGTGGTA+AGG - chr7_1:52632391-52632410 Msa1024120:intron 55.0%
CTCTCCTTACCACAGTCCGT+GGG + chr7_1:52632398-52632417 None:intergenic 55.0%
ACTCTCCTTACCACAGTCCG+TGG + chr7_1:52632399-52632418 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr7_1:52632562-52632581 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr7_1:52632561-52632580 Msa1024120:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr7_1:52632562-52632581 Msa1024120:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr7_1:52632568-52632587 Msa1024120:intron 55.0%
TTACCTACTTGCCCGAACGG+TGG - chr7_1:52633265-52633284 Msa1024120:CDS 55.0%
AATCCACCGTTCGGGCAAGT+AGG + chr7_1:52633271-52633290 None:intergenic 55.0%
TGATGCGGCTTCTCTGCAGT+CGG - chr7_1:52635143-52635162 Msa1024120:CDS 55.0%
CAACAGATGGCACCAGAGTC+AGG + chr7_1:52635461-52635480 None:intergenic 55.0%
!! CTGGTGCCATCTGTTGCCAT+TGG - chr7_1:52635465-52635484 Msa1024120:intron 55.0%
TGCCATCTGTTGCCATTGGG+AGG - chr7_1:52635469-52635488 Msa1024120:intron 55.0%
GCCATCTGTTGCCATTGGGA+GGG - chr7_1:52635470-52635489 Msa1024120:intron 55.0%
TCCCTCCCAATGGCAACAGA+TGG + chr7_1:52635474-52635493 None:intergenic 55.0%
CGCTTGAAGATCCCTCCCAA+TGG + chr7_1:52635484-52635503 None:intergenic 55.0%
CAAGCGGCTAGAGTAACAGC+AGG - chr7_1:52635498-52635517 Msa1024120:intron 55.0%
CGTGTGAACGGAATCGTGGA+TGG + chr7_1:52635707-52635726 None:intergenic 55.0%
TCATCGGAGATGGACCGTAC+AGG - chr7_1:52636056-52636075 Msa1024120:intron 55.0%
CACAGGTATCCCCGAAGACA+TGG + chr7_1:52636937-52636956 None:intergenic 55.0%
CATGTCTTCGGGGATACCTG+TGG - chr7_1:52636935-52636954 Msa1024120:intron 55.0%
TTGGAAGGCAGCCACACGAA+AGG - chr7_1:52637139-52637158 Msa1024120:CDS 55.0%
GCGGACCGTTCCTAGCTTAG+AGG - chr7_1:52632011-52632030 Msa1024120:intron 60.0%
! GAGAGAAGACCCACGGACTG+TGG - chr7_1:52632386-52632405 Msa1024120:intron 60.0%
CAGAGCAGCTGACCTGACTC+TGG - chr7_1:52635446-52635465 Msa1024120:intron 60.0%
GTCTTCGGGGATACCTGTGG+TGG - chr7_1:52636938-52636957 Msa1024120:intron 60.0%
CCTGTGGTGGCAGCACGCGC+CGG - chr7_1:52636951-52636970 Msa1024120:intron 75.0%
! CCGGCGCGTGCTGCCACCAC+AGG + chr7_1:52636954-52636973 None:intergenic 80.0%
! GTGGTGGCAGCACGCGCCGG+AGG - chr7_1:52636954-52636973 Msa1024120:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 52631207 52637551 52631207 ID=Msa1024120;Name=Msa1024120
chr7_1 mRNA 52631207 52637551 52631207 ID=Msa1024120-mRNA-1;Parent=Msa1024120;Name=Msa1024120-mRNA-1;_AED=0.12;_eAED=0.12;_QI=141|0.88|0.9|1|1|1|10|268|484
chr7_1 exon 52631207 52631970 52631207 ID=Msa1024120-mRNA-1:exon:10475;Parent=Msa1024120-mRNA-1
chr7_1 exon 52632681 52632737 52632681 ID=Msa1024120-mRNA-1:exon:10474;Parent=Msa1024120-mRNA-1
chr7_1 exon 52632869 52632946 52632869 ID=Msa1024120-mRNA-1:exon:10473;Parent=Msa1024120-mRNA-1
chr7_1 exon 52633013 52633100 52633013 ID=Msa1024120-mRNA-1:exon:10472;Parent=Msa1024120-mRNA-1
chr7_1 exon 52633239 52633309 52633239 ID=Msa1024120-mRNA-1:exon:10471;Parent=Msa1024120-mRNA-1
chr7_1 exon 52633828 52633901 52633828 ID=Msa1024120-mRNA-1:exon:10470;Parent=Msa1024120-mRNA-1
chr7_1 exon 52634008 52634125 52634008 ID=Msa1024120-mRNA-1:exon:10469;Parent=Msa1024120-mRNA-1
chr7_1 exon 52634834 52634904 52634834 ID=Msa1024120-mRNA-1:exon:10468;Parent=Msa1024120-mRNA-1
chr7_1 exon 52635113 52635179 52635113 ID=Msa1024120-mRNA-1:exon:10467;Parent=Msa1024120-mRNA-1
chr7_1 exon 52637076 52637551 52637076 ID=Msa1024120-mRNA-1:exon:10466;Parent=Msa1024120-mRNA-1
chr7_1 five_prime_UTR 52637411 52637551 52637411 ID=Msa1024120-mRNA-1:five_prime_utr;Parent=Msa1024120-mRNA-1
chr7_1 CDS 52637076 52637410 52637076 ID=Msa1024120-mRNA-1:cds;Parent=Msa1024120-mRNA-1
chr7_1 CDS 52635113 52635179 52635113 ID=Msa1024120-mRNA-1:cds;Parent=Msa1024120-mRNA-1
chr7_1 CDS 52634834 52634904 52634834 ID=Msa1024120-mRNA-1:cds;Parent=Msa1024120-mRNA-1
chr7_1 CDS 52634008 52634125 52634008 ID=Msa1024120-mRNA-1:cds;Parent=Msa1024120-mRNA-1
chr7_1 CDS 52633828 52633901 52633828 ID=Msa1024120-mRNA-1:cds;Parent=Msa1024120-mRNA-1
chr7_1 CDS 52633239 52633309 52633239 ID=Msa1024120-mRNA-1:cds;Parent=Msa1024120-mRNA-1
chr7_1 CDS 52633013 52633100 52633013 ID=Msa1024120-mRNA-1:cds;Parent=Msa1024120-mRNA-1
chr7_1 CDS 52632869 52632946 52632869 ID=Msa1024120-mRNA-1:cds;Parent=Msa1024120-mRNA-1
chr7_1 CDS 52632681 52632737 52632681 ID=Msa1024120-mRNA-1:cds;Parent=Msa1024120-mRNA-1
chr7_1 CDS 52631475 52631970 52631475 ID=Msa1024120-mRNA-1:cds;Parent=Msa1024120-mRNA-1
chr7_1 three_prime_UTR 52631207 52631474 52631207 ID=Msa1024120-mRNA-1:three_prime_utr;Parent=Msa1024120-mRNA-1
Gene Sequence

>Msa1024120

ATGAATATGAATGCTACTTCACTCTCTATAAACCTTTCCACTTCATCATCATACCCTTCTATTGTATCCCTTAGATTTCAACGTTTTTCACCATTACAAGCAAAACCCATTAATATTTCTTGTAGAAAACCACGGTTGTGCTCTTTTCAAGCGTCAAAAACAGTGAATTGTAGAAAAAGTTTTGTGCTTGAAGCCACTAACATGGATAAAGCAGAAGTTGATTCTCATGATGAAGAAGAAGATAAGGAAGAGGGTACTTCTTCTTCTTCTACTGAAAATGAGAGGAATTCAAGGCCTCGTCGAATTGCTCTCTTTGTTGAACCTTCTCCATTTGCATATGTATCAGGATACAAAAACCGGTTTCAGAACTTTATCAAATGCCTTCGAGAAATGGGAGATGAGGTGATGGTTGTGACAACGCATAAAGGAGTTCCCCAAGAATTTTATGGAGCCAAATTAATAGGATCTTGGAGCTTTCCCCTCCCTTGGTATCAGAACGTACCGCTCTCTTTGGCACTTAGTCCAAGAATAATTTCAGAGGTAGCTCGGTTCAAGCCTGACATAATACATGCATCATCACCAGGCATAATGGTTTTTGGTGCTCTTATCATTGCAAAACTTTTGTCTGTTCCAATTGTCATGTCCTATCATACCCATGTACCAGTAGCAGCTGACCTGACTCTGGTGCCATCTGTTGCCATTGGGAGGGATCTTCAAGCGGCTAGAGTAACAGCAGCTAACAAGATTCGTCTTTGGAACAAAGGTGTTGATTCTGAAAGTTTCCATCCACGATTCCGTTCACACGAAATGCGATTAAGACTAAGCAACGGTGAACCTGAGAAACCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAAAAGAGTTTAGGTTTTATCAAAGGGGTCATGGATAAGCTTCCTGAAGCTCGAGTTGCTTTCATCGGAGATGGACCGTACAGGGAGGAGCTAGAGAAAATGTTTGAAGGTATGCCTGCAGTATTCACAGGAATGTTAGGAGGGGAAGTACTCTCTCAAGCATATGCTAGTGGAGATGTATTTATCATGCCTTCAGAGTCAGAAACACTTGGCTTCGTTGTTTTGGAGGCCATGTCTTCGGGGATACCTGTGGTGGCAGCACGCGCCGGAGGCATTCCAGATATTATTCCTGCAGATCAAGAAGGTAAAACAGGTTATCTCTATAATCCAGGGGATCTTGAAGACTGCTTGAGTAAATTGAAACCCCTTTTGTTCGACAAAGAGTTGAGAGAAACCATAGGAAAAGCTGCACGTAATGAAATGGAAAAATTTGATTGGAAGGCAGCCACACGAAAGGTTCGAAATGAACAATACAATGCTGCCATCTGGTTCTGGCGCAAGAAAAGGGCGATATTATTGAGACCCTTACAATGGATCAGTAAACGTGTTTTCCCATCACCACAAGTTAACTATAGATGA

Protein sequence

>Msa1024120

MNMNATSLSINLSTSSSYPSIVSLRFQRFSPLQAKPINISCRKPRLCSFQASKTVNCRKSFVLEATNMDKAEVDSHDEEEDKEEGTSSSSTENERNSRPRRIALFVEPSPFAYVSGYKNRFQNFIKCLREMGDEVMVVTTHKGVPQEFYGAKLIGSWSFPLPWYQNVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLSVPIVMSYHTHVPVAADLTLVPSVAIGRDLQAARVTAANKIRLWNKGVDSESFHPRFRSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLGFIKGVMDKLPEARVAFIGDGPYREELEKMFEGMPAVFTGMLGGEVLSQAYASGDVFIMPSESETLGFVVLEAMSSGIPVVAARAGGIPDIIPADQEGKTGYLYNPGDLEDCLSKLKPLLFDKELRETIGKAARNEMEKFDWKAATRKVRNEQYNAAIWFWRKKRAILLRPLQWISKRVFPSPQVNYR*