AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0000180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000180 MtrunA17_Chr7g0241811 91.860 516 9 3 1 484 1 515 0.0 954
Msa0000180 MtrunA17_Chr4g0005971 71.602 493 106 4 15 481 25 509 0.0 702
Msa0000180 MtrunA17_Chr4g0005961 70.588 34 10 0 425 458 1 34 5.76e-13 63.9
Msa0000180 MtrunA17_Chr4g0047711 25.225 333 205 13 92 391 5 326 1.78e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000180 AT5G01220.1 73.474 426 90 1 80 482 84 509 0.0 650
Msa0000180 AT5G01220.2 75.595 336 59 1 80 392 84 419 0.0 516

Find 137 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCAAGATCCTATTAATT+TGG 0.186753 1_1:+1016184 None:intergenic
ACTTCCCTATTGAAATTATA+AGG 0.226774 1_1:-1012591 Msa0000180:three_prime_UTR
ATTACCCTTTCCAACTTCTT+TGG 0.232734 1_1:-1018841 Msa0000180:five_prime_UTR
AACACTTGGCTTCGTTGTTT+TGG 0.243869 1_1:-1013179 Msa0000180:CDS
GCTACCTCTGAAATTATTCT+TGG 0.256331 1_1:+1015405 None:intergenic
ATTTGGCTCCATAAAATTCT+TGG 0.263085 1_1:+1016201 None:intergenic
AATAGGGTCATGAAGGATTT+AGG 0.285334 1_1:+1012632 None:intergenic
TAATGCCTTATAATTTCAAT+AGG 0.320295 1_1:+1012586 None:intergenic
TATCAAATGCCTTCGAGAAA+TGG 0.321585 1_1:-1016472 Msa0000180:CDS
CTTGGAGTTGAAAAGAGTTT+AGG 0.324101 1_1:-1014232 Msa0000180:CDS
TTCTGCTTTATCCATGTTAG+TGG 0.324376 1_1:+1018547 None:intergenic
ACAATGCTGCCATCTGGTTC+TGG 0.350326 1_1:-1012910 Msa0000180:CDS
TTTGGCTCCATAAAATTCTT+GGG 0.352450 1_1:+1016202 None:intergenic
TTTCTACAAGAAATATTAAT+GGG 0.366516 1_1:+1018635 None:intergenic
CAGCTAACAAGATTCGTCTT+TGG 0.369310 1_1:-1014432 Msa0000180:CDS
TGATCTGCAGGAATAATATC+TGG 0.372207 1_1:+1013106 None:intergenic
ATGAAAGCAACTCGAGCTTC+AGG 0.388762 1_1:+1014050 None:intergenic
AATCTAAGGGATACAATAGA+AGG 0.389088 1_1:+1018686 None:intergenic
GCAGTATTCACAGGAATGTT+AGG 0.393518 1_1:-1013265 Msa0000180:CDS
TCAACTCTTTGTCGAACAAA+AGG 0.396746 1_1:+1013017 None:intergenic
TCTGGTTCTGGCGCAAGAAA+AGG 0.398886 1_1:-1012898 Msa0000180:CDS
ATCAAATGCCTTCGAGAAAT+GGG 0.406692 1_1:-1016471 Msa0000180:CDS
CAACTCTTTGTCGAACAAAA+GGG 0.406801 1_1:+1013018 None:intergenic
TGCATCATCACCAGGCATAA+TGG 0.407359 1_1:-1015358 Msa0000180:intron
ACGTTTACTGATCCATTGTA+AGG 0.414214 1_1:+1012859 None:intergenic
CTGAAAATGAGAGGAATTCA+AGG 0.418257 1_1:-1018469 Msa0000180:CDS
CACTGGTACATGGGTATGAT+AGG 0.419410 1_1:+1015178 None:intergenic
TGAACTATCAAGGGTTTCTC+AGG 0.420730 1_1:+1014265 None:intergenic
AAATACAAAATAGATAGAAT+AGG 0.422824 1_1:+1012615 None:intergenic
ATAGTTCATGTTGGACGGCT+TGG 0.424140 1_1:-1014250 Msa0000180:CDS
AATTCAGCTTTCCCCTCCCT+TGG 0.426635 1_1:-1015461 Msa0000180:intron
AAAAGCTGCACGTAATGAAA+TGG 0.426643 1_1:-1012981 Msa0000180:CDS
CTGGTGCCATCTGTTGCCAT+TGG 0.430492 1_1:-1014622 Msa0000180:CDS
TCAGAACGTACCGCTCTCTT+TGG 0.431253 1_1:-1015436 Msa0000180:CDS
GAGAAAGAATCCAAAGAAGT+TGG 0.432970 1_1:+1018831 None:intergenic
ATGCAGCTTATAATGTGATA+TGG 0.434213 1_1:-1012701 Msa0000180:three_prime_UTR
GCAGATCAAGAAGGTAAAAC+AGG 0.441468 1_1:-1013091 Msa0000180:CDS
ATTTGATAAAGTTCTGAAAC+CGG 0.451845 1_1:+1016487 None:intergenic
GTATGATAGGACATGACAAT+TGG 0.454132 1_1:+1015191 None:intergenic
GAGCCAAATTAATAGGATCT+TGG 0.454953 1_1:-1016187 Msa0000180:CDS
ACGAAATGCGATTAAGACTA+AGG 0.456016 1_1:-1014363 Msa0000180:intron
CTGAAACTTACACTGGTACA+TGG 0.458251 1_1:+1015168 None:intergenic
TGGTGCCATCTGTTGCCATT+GGG 0.458535 1_1:-1014621 Msa0000180:CDS
AACAATACAATGCTGCCATC+TGG 0.461214 1_1:-1012916 Msa0000180:CDS
AATGCCTTATAATTTCAATA+GGG 0.461914 1_1:+1012587 None:intergenic
GCATTCATATTCATAAGAAT+CGG 0.463748 1_1:+1018749 None:intergenic
ACAGGTTATCTCTATAATCC+AGG 0.464651 1_1:-1013073 Msa0000180:CDS
AATACAAAATAGATAGAATA+GGG 0.465133 1_1:+1012616 None:intergenic
CCGGCGCGTGCTGCCACCAC+AGG 0.469518 1_1:+1013136 None:intergenic
CCGTCCAACATGAACTATCA+AGG 0.479820 1_1:+1014255 None:intergenic
AGGAACAATCGTACTAAGCT+TGG 0.480255 1_1:+1012789 None:intergenic
TAGTACGATTGTTCCTTGCT+TGG 0.480378 1_1:-1012782 Msa0000180:three_prime_UTR
CGAGTTGCTTTCATCGGAGA+TGG 0.480961 1_1:-1014041 Msa0000180:CDS
CAACAGATGGCACCAGAGTC+AGG 0.483672 1_1:+1014629 None:intergenic
CTATAGTTAACTTGTGGTGA+TGG 0.484123 1_1:+1012830 None:intergenic
CTGGTTCTGGCGCAAGAAAA+GGG 0.485575 1_1:-1012897 Msa0000180:CDS
AAGCAGTCTTCAAGATCCCC+TGG 0.497573 1_1:+1013055 None:intergenic
AACATTCCTGTGAATACTGC+AGG 0.502201 1_1:+1013268 None:intergenic
TGAAGAAGAAGATAAGGAAG+AGG 0.507796 1_1:-1018510 Msa0000180:CDS
TCATGATGAAGAAGAAGATA+AGG 0.508883 1_1:-1018516 Msa0000180:CDS
CATTCATATTCATAAGAATC+GGG 0.512930 1_1:+1018750 None:intergenic
GAGCTAGAGAAAATGTTTGA+AGG 0.513757 1_1:-1013295 Msa0000180:CDS
CCTTCAGAGTCAGAAACACT+TGG 0.519010 1_1:-1013193 Msa0000180:CDS
AATAATATCTGGAATGCCTC+CGG 0.525217 1_1:+1013117 None:intergenic
CCAAATTAATAGGATCTTGG+AGG 0.528912 1_1:-1016184 Msa0000180:intron
GAAAGGGTAATGTGAGTGAA+TGG 0.529042 1_1:+1018853 None:intergenic
ATGGTTGTGACAACGCATAA+AGG 0.529882 1_1:-1016230 Msa0000180:CDS
GATGATGCATGTATTATGTC+AGG 0.531330 1_1:+1015372 None:intergenic
TAGATAGAATAGGGTCATGA+AGG 0.531571 1_1:+1012625 None:intergenic
GGAACAATCGTACTAAGCTT+GGG 0.531998 1_1:+1012790 None:intergenic
TGCAGACCAACCATTATGCC+TGG 0.532076 1_1:+1015348 None:intergenic
CCTTGATAGTTCATGTTGGA+CGG 0.532119 1_1:-1014255 Msa0000180:CDS
CTCTCTCAAGCATATGCTAG+TGG 0.533783 1_1:-1013232 Msa0000180:CDS
CAGAGCAGCTGACCTGACTC+TGG 0.538024 1_1:-1014641 Msa0000180:CDS
GAAGAAGAAGATAAGGAAGA+GGG 0.541074 1_1:-1018509 Msa0000180:CDS
CGTGTGAACGGAATCGTGGA+TGG 0.542069 1_1:+1014383 None:intergenic
CAGGTTATCTCTATAATCCA+GGG 0.542485 1_1:-1013072 Msa0000180:CDS
AGCGGTACGTTCTGATACCA+AGG 0.543963 1_1:+1015444 None:intergenic
TGCCATCTGTTGCCATTGGG+AGG 0.550215 1_1:-1014618 Msa0000180:CDS
CACAGGTATCCCCGAAGACA+TGG 0.550551 1_1:+1013153 None:intergenic
TATAGTTAACTTGTGGTGAT+GGG 0.550671 1_1:+1012831 None:intergenic
GAATAATTTCAGAGGTAGCT+CGG 0.552361 1_1:-1015401 Msa0000180:CDS
GTGGTGGCAGCACGCGCCGG+AGG 0.554010 1_1:-1013133 Msa0000180:CDS
AGAATCCAAAGAAGTTGGAA+AGG 0.556799 1_1:+1018836 None:intergenic
AACTCTTTGTCGAACAAAAG+GGG 0.558837 1_1:+1013019 None:intergenic
TCATCGGAGATGGACCGTAC+AGG 0.559868 1_1:-1014031 Msa0000180:intron
GAATCCAAAGAAGTTGGAAA+GGG 0.562269 1_1:+1018837 None:intergenic
TGAAACTTACACTGGTACAT+GGG 0.562739 1_1:+1015169 None:intergenic
TTGGCTCCATAAAATTCTTG+GGG 0.568506 1_1:+1016203 None:intergenic
CCTGTGGTGGCAGCACGCGC+CGG 0.571301 1_1:-1013136 Msa0000180:CDS
GAAGCTCGAGTTGCTTTCAT+CGG 0.571976 1_1:-1014047 Msa0000180:CDS
AGAAGGGTATGATGATGAAG+TGG 0.577234 1_1:+1018703 None:intergenic
TTCATTTCGAACCTTTCGTG+TGG 0.577756 1_1:+1012937 None:intergenic
CCAAGTGTTTCTGACTCTGA+AGG 0.579198 1_1:+1013193 None:intergenic
AAGATTCGTCTTTGGAACAA+AGG 0.579970 1_1:-1014424 Msa0000180:CDS
TGTGCTTGAAGCCACTAACA+TGG 0.581699 1_1:-1018558 Msa0000180:CDS
TATTATTGAGACCCTTACAA+TGG 0.581845 1_1:-1012871 Msa0000180:CDS
GGTATGCCTGCAGTATTCAC+AGG 0.583017 1_1:-1013274 Msa0000180:CDS
GCCATCTGTTGCCATTGGGA+GGG 0.585852 1_1:-1014617 Msa0000180:CDS
CTTCTTCTACTGAAAATGAG+AGG 0.590922 1_1:-1018478 Msa0000180:CDS
CATCATCTATAGTTAACTTG+TGG 0.591830 1_1:+1012824 None:intergenic
GTATTCACAGGAATGTTAGG+AGG 0.591955 1_1:-1013262 Msa0000180:CDS
AGGACTCACGCAAATGGAGA+AGG 0.595520 1_1:+1018419 None:intergenic
ATTATTCCTGCAGATCAAGA+AGG 0.599930 1_1:-1013100 Msa0000180:CDS
TCCCTCCCAATGGCAACAGA+TGG 0.600891 1_1:+1014616 None:intergenic
TACGTTCTGATACCAAGGGA+GGG 0.601576 1_1:+1015449 None:intergenic
CGTCCAACATGAACTATCAA+GGG 0.605699 1_1:+1014256 None:intergenic
CGTTTACTGATCCATTGTAA+GGG 0.609300 1_1:+1012860 None:intergenic
ATCTAAGGGATACAATAGAA+GGG 0.609792 1_1:+1018687 None:intergenic
CAAGCGGCTAGAGTAACAGC+AGG 0.610811 1_1:-1014589 Msa0000180:intron
CGCTTGAAGATCCCTCCCAA+TGG 0.611728 1_1:+1014606 None:intergenic
TATTCACAGGAATGTTAGGA+GGG 0.613060 1_1:-1013261 Msa0000180:CDS
CCTCATCTCCCATTTCTCGA+AGG 0.616997 1_1:+1016463 None:intergenic
TTAATCGCATTTCGTGTGAA+CGG 0.618791 1_1:+1014371 None:intergenic
AAACCCTTGATAGTTCATGT+TGG 0.620136 1_1:-1014259 Msa0000180:CDS
ATTTCGTGTGAACGGAATCG+TGG 0.620865 1_1:+1014379 None:intergenic
ACGTTCTGATACCAAGGGAG+GGG 0.624386 1_1:+1015450 None:intergenic
TTGGAAGGCAGCCACACGAA+AGG 0.624568 1_1:-1012948 Msa0000180:CDS
GTCATAATAAGTCACCTGTA+CGG 0.625754 1_1:+1014017 None:intergenic
AAAGAGTTGAGAGAAACCAT+AGG 0.627134 1_1:-1013004 Msa0000180:CDS
CCTTCGAGAAATGGGAGATG+AGG 0.627264 1_1:-1016463 Msa0000180:intron
CATGTCTTCGGGGATACCTG+TGG 0.630437 1_1:-1013152 Msa0000180:CDS
TTTCTTGCGCCAGAACCAGA+TGG 0.633203 1_1:+1012901 None:intergenic
GGTATGATGATGAAGTGGAA+AGG 0.636351 1_1:+1018708 None:intergenic
ATATTTCTTGTAGAAAACCA+CGG 0.638873 1_1:-1018628 Msa0000180:CDS
GTGTTAAATCAAACCAAGCA+AGG 0.641545 1_1:+1012769 None:intergenic
CATTGGGAGGGATCTTCAAG+CGG 0.642986 1_1:-1014605 Msa0000180:CDS
TAGTCCAAGAATAATTTCAG+AGG 0.645622 1_1:-1015409 Msa0000180:CDS
ATAATACATGCATCATCACC+AGG 0.646793 1_1:-1015366 Msa0000180:CDS
ATTCACAGGAATGTTAGGAG+GGG 0.648550 1_1:-1013260 Msa0000180:CDS
GTCTTCGGGGATACCTGTGG+TGG 0.652844 1_1:-1013149 Msa0000180:CDS
GGACTAAGTGCCAAAGAGAG+CGG 0.657922 1_1:+1015426 None:intergenic
GTACGTTCTGATACCAAGGG+AGG 0.667883 1_1:+1015448 None:intergenic
GCGGTACGTTCTGATACCAA+GGG 0.688280 1_1:+1015445 None:intergenic
AGGTTATCTCTATAATCCAG+GGG 0.701223 1_1:-1013071 Msa0000180:CDS
GCTTGAAAAGAGCACAACCG+TGG 0.703799 1_1:+1018611 None:intergenic
ACAAAGAGAGCAATTCGACG+AGG 0.751848 1_1:+1018446 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTACAAGAAATATTAAT+GGG + chr1_1:1012807-1012826 None:intergenic 15.0%
!!! TTTTCTACAAGAAATATTAA+TGG + chr1_1:1012808-1012827 None:intergenic 15.0%
!!! TTCTTTAATTTGAATTGTAT+TGG - chr1_1:1013076-1013095 Msa0000180:CDS 15.0%
!!! GATAAAGGAATTTTTTTTAT+CGG - chr1_1:1013556-1013575 Msa0000180:intron 15.0%
!!! ATTTTTCTGTTAAAAGTTTT+AGG - chr1_1:1014046-1014065 Msa0000180:CDS 15.0%
!!! TTTTTTGTTTTCTATGTTAA+AGG - chr1_1:1014073-1014092 Msa0000180:intron 15.0%
!!! GTTGATTTTCATTTAATTTT+AGG - chr1_1:1015039-1015058 Msa0000180:intron 15.0%
!!! AGATTTTCATTGAATATTTT+GGG + chr1_1:1015081-1015100 None:intergenic 15.0%
!! AATCATAAAATCATGATAAT+AGG + chr1_1:1015537-1015556 None:intergenic 15.0%
!!! AAAAGTATTAGTGTAAAATA+TGG + chr1_1:1015936-1015955 None:intergenic 15.0%
!! CAAAATAATATATCTTTCAT+AGG - chr1_1:1017298-1017317 Msa0000180:intron 15.0%
!! AATACAAAATAGATAGAATA+GGG + chr1_1:1018826-1018845 None:intergenic 15.0%
!! AAATACAAAATAGATAGAAT+AGG + chr1_1:1018827-1018846 None:intergenic 15.0%
!! AAAAAAAACAGCACAAAAAT+AGG + chr1_1:1013043-1013062 None:intergenic 20.0%
!!! TAATGAGTTGGATATAAATA+TGG - chr1_1:1013857-1013876 Msa0000180:intron 20.0%
!! TATGTTAAAGGTTTGATATT+TGG - chr1_1:1014085-1014104 Msa0000180:intron 20.0%
!! TATCATATCATATACGTATT+CGG + chr1_1:1014253-1014272 None:intergenic 20.0%
!!! AAATTTCTCATATTTCTATG+CGG + chr1_1:1014277-1014296 None:intergenic 20.0%
!!! CAGATTTTCATTGAATATTT+TGG + chr1_1:1015082-1015101 None:intergenic 20.0%
!! CAAAATATTCAATGAAAATC+TGG - chr1_1:1015080-1015099 Msa0000180:intron 20.0%
!! TATGTTTATTTGTCTCTTAT+AGG - chr1_1:1015184-1015203 Msa0000180:CDS 20.0%
!! CTAAATCCATTAAGATAATA+GGG + chr1_1:1015701-1015720 None:intergenic 20.0%
!! ACTAAATCCATTAAGATAAT+AGG + chr1_1:1015702-1015721 None:intergenic 20.0%
!! TAAGATTAAAAATAAGCTGT+TGG + chr1_1:1016619-1016638 None:intergenic 20.0%
!! GTTTAAATATAAGCATTTCT+CGG - chr1_1:1016927-1016946 Msa0000180:intron 20.0%
!! AATAACGAAAAAATGACAAA+AGG + chr1_1:1017108-1017127 None:intergenic 20.0%
!! ATAAACAATTATGAGTGTTT+GGG - chr1_1:1017647-1017666 Msa0000180:intron 20.0%
!!! ATTAGCTTAAAAGAACTTAT+AGG + chr1_1:1017706-1017725 None:intergenic 20.0%
!!! CTTTTAAGCTAATTTCAATA+AGG - chr1_1:1017713-1017732 Msa0000180:intron 20.0%
!! GAACACAAATTATACTTTAT+AGG - chr1_1:1017752-1017771 Msa0000180:intron 20.0%
!! TTTCTTTGATTATACTTTCT+AGG - chr1_1:1017802-1017821 Msa0000180:intron 20.0%
!! ATTGTTAAATATGAACACTT+CGG - chr1_1:1018080-1018099 Msa0000180:intron 20.0%
!! ATGAAATGGAAAAATTTGAT+TGG - chr1_1:1018472-1018491 Msa0000180:CDS 20.0%
!! CTTTACACTTACAAAAAATT+AGG + chr1_1:1018771-1018790 None:intergenic 20.0%
!! AATGCCTTATAATTTCAATA+GGG + chr1_1:1018855-1018874 None:intergenic 20.0%
!! TAATGCCTTATAATTTCAAT+AGG + chr1_1:1018856-1018875 None:intergenic 20.0%
!! AAAAATGAAGGAACAAGTTT+TGG + chr1_1:1012669-1012688 None:intergenic 25.0%
! CATTCATATTCATAAGAATC+GGG + chr1_1:1012692-1012711 None:intergenic 25.0%
! GCATTCATATTCATAAGAAT+CGG + chr1_1:1012693-1012712 None:intergenic 25.0%
! TGAAAAACGTTGAAATCTAA+GGG + chr1_1:1012769-1012788 None:intergenic 25.0%
! ATATTTCTTGTAGAAAACCA+CGG - chr1_1:1012811-1012830 Msa0000180:exon 25.0%
!!! TGGAATGTAATTTTAGCAAA+AGG - chr1_1:1013341-1013360 Msa0000180:intron 25.0%
!!! AATGTAATTTTAGCAAAAGG+CGG - chr1_1:1013344-1013363 Msa0000180:intron 25.0%
! ATCATATACCATAAGTTACA+CGG - chr1_1:1013398-1013417 Msa0000180:intron 25.0%
! TATTTAAACCGTGTAACTTA+TGG + chr1_1:1013409-1013428 None:intergenic 25.0%
! CAAAATGACACAGAAATATA+AGG - chr1_1:1013449-1013468 Msa0000180:intron 25.0%
! TAAACCATTAAATTCAAGCT+GGG - chr1_1:1013477-1013496 Msa0000180:intron 25.0%
! AAAAATTCCTTTATCTTGAG+TGG + chr1_1:1013551-1013570 None:intergenic 25.0%
!! AGTTTCTCTTATAGTTTTCT+AGG + chr1_1:1013817-1013836 None:intergenic 25.0%
! AGATCTTAAGATTAATGAGT+TGG - chr1_1:1013845-1013864 Msa0000180:intron 25.0%
!!! GTTTGGTTTTAGTGTTTAAT+TGG - chr1_1:1013991-1014010 Msa0000180:intron 25.0%
!!! AGTTTTGTTGTTTCTTAACA+TGG - chr1_1:1014194-1014213 Msa0000180:intron 25.0%
!! GTTGACAAAAGAATGATTTT+AGG + chr1_1:1014520-1014539 None:intergenic 25.0%
!!! AATTTTAGTTTGACCTCAAT+TGG + chr1_1:1014797-1014816 None:intergenic 25.0%
! AATTGAGGTCAAACTAAAAT+TGG - chr1_1:1014796-1014815 Msa0000180:intron 25.0%
!! CTCAACATAAAATTTGTTCT+TGG - chr1_1:1014891-1014910 Msa0000180:intron 25.0%
!!! ATTTGATAAAGTTCTGAAAC+CGG + chr1_1:1014955-1014974 None:intergenic 25.0%
!! TTTTATGGAGCCAAATTAAT+AGG - chr1_1:1015245-1015264 Msa0000180:intron 25.0%
! GACATCATTATTTGTCTTTA+TGG + chr1_1:1015626-1015645 None:intergenic 25.0%
! AAGATTCCCTATTATCTTAA+TGG - chr1_1:1015692-1015711 Msa0000180:intron 25.0%
!! TCTAAAACCACATATTTGAT+TGG - chr1_1:1015821-1015840 Msa0000180:intron 25.0%
! TTGTTCGAAAATATGTGAAT+AGG + chr1_1:1015904-1015923 None:intergenic 25.0%
! TGAATTTCCAATTTGTGTTT+GGG + chr1_1:1015964-1015983 None:intergenic 25.0%
!! TTATGGTGTTAATAAGCATA+AGG - chr1_1:1016132-1016151 Msa0000180:intron 25.0%
! ATTTACCAGTTTAGATAACA+CGG - chr1_1:1016318-1016337 Msa0000180:intron 25.0%
! AAATTATGTACTGCTTATGT+TGG - chr1_1:1016398-1016417 Msa0000180:intron 25.0%
! CTTTCTATTAATCAACCTTA+GGG + chr1_1:1016474-1016493 None:intergenic 25.0%
!!! TTGCTTACTTTTTTCCTATA+TGG - chr1_1:1016719-1016738 Msa0000180:intron 25.0%
!! ACAAATATTTGAGACCATAT+AGG + chr1_1:1016736-1016755 None:intergenic 25.0%
!! TGTGAGCATATCATAAATTT+TGG - chr1_1:1016753-1016772 Msa0000180:intron 25.0%
! ATATAAAACGACTAGATAAG+AGG + chr1_1:1016888-1016907 None:intergenic 25.0%
!!! AAGAGTTTAGGTTTTATCAA+AGG - chr1_1:1017219-1017238 Msa0000180:intron 25.0%
!!! AGAGTTTAGGTTTTATCAAA+GGG - chr1_1:1017220-1017239 Msa0000180:intron 25.0%
! TTCCATCTCAAATCATATAA+TGG - chr1_1:1017532-1017551 Msa0000180:intron 25.0%
!! TTTCATGTTTAGAACATGTT+TGG - chr1_1:1017585-1017604 Msa0000180:intron 25.0%
! CATAAACAATTATGAGTGTT+TGG - chr1_1:1017646-1017665 Msa0000180:intron 25.0%
! ATTTGTGTTCATAAGCTATT+TGG + chr1_1:1017742-1017761 None:intergenic 25.0%
! GGATAAACAACTTAATTAAG+CGG + chr1_1:1017931-1017950 None:intergenic 25.0%
! AAAATATTGAGAATGAGATG+TGG + chr1_1:1018020-1018039 None:intergenic 25.0%
!! CAATTTTCATTATCTAGAGA+GGG + chr1_1:1018064-1018083 None:intergenic 25.0%
!! ACAATTTTCATTATCTAGAG+AGG + chr1_1:1018065-1018084 None:intergenic 25.0%
! AATGGAAAAATTTGATTGGA+AGG - chr1_1:1018476-1018495 Msa0000180:CDS 25.0%
! ACTTCCCTATTGAAATTATA+AGG - chr1_1:1018848-1018867 Msa0000180:five_prime_UTR 25.0%
ATAAGAATCGGGAAAAATGA+AGG + chr1_1:1012681-1012700 None:intergenic 30.0%
ATCTAAGGGATACAATAGAA+GGG + chr1_1:1012755-1012774 None:intergenic 30.0%
AATCTAAGGGATACAATAGA+AGG + chr1_1:1012756-1012775 None:intergenic 30.0%
GTGAAAAACGTTGAAATCTA+AGG + chr1_1:1012770-1012789 None:intergenic 30.0%
!!! TTAATGGGTTTTGCTTGTAA+TGG + chr1_1:1012792-1012811 None:intergenic 30.0%
TCATGATGAAGAAGAAGATA+AGG - chr1_1:1012923-1012942 Msa0000180:CDS 30.0%
! GGCTAATGCTTTATTGAATT+CGG - chr1_1:1013097-1013116 Msa0000180:CDS 30.0%
! GCTAATGCTTTATTGAATTC+GGG - chr1_1:1013098-1013117 Msa0000180:CDS 30.0%
CAATGGTAAGAGTTTATACA+GGG - chr1_1:1013258-1013277 Msa0000180:CDS 30.0%
AATGACACAGAAATATAAGG+AGG - chr1_1:1013452-1013471 Msa0000180:intron 30.0%
GTAAACCATTAAATTCAAGC+TGG - chr1_1:1013476-1013495 Msa0000180:intron 30.0%
CGTATCAAATGAAACATCTA+AGG + chr1_1:1013522-1013541 None:intergenic 30.0%
AAGCAATTGAATTGTCTTGT+TGG - chr1_1:1013969-1013988 Msa0000180:intron 30.0%
! ATTGAATTGTCTTGTTGGTT+TGG - chr1_1:1013974-1013993 Msa0000180:intron 30.0%
CAAAAGACAGAATTGATGTT+TGG - chr1_1:1014342-1014361 Msa0000180:intron 30.0%
GATCTTAGAATTATACACCT+TGG - chr1_1:1014402-1014421 Msa0000180:CDS 30.0%
ATGTATCAGGATACAAAAAC+CGG - chr1_1:1014933-1014952 Msa0000180:intron 30.0%
TATTTGTCTCTTATAGGTGA+TGG - chr1_1:1015190-1015209 Msa0000180:CDS 30.0%
! TTTGGCTCCATAAAATTCTT+GGG + chr1_1:1015240-1015259 None:intergenic 30.0%
! ATTTGGCTCCATAAAATTCT+TGG + chr1_1:1015241-1015260 None:intergenic 30.0%
GTTATAAGCAATTGACAGTT+AGG + chr1_1:1015444-1015463 None:intergenic 30.0%
TCTGATTACAATGTAGAATG+TGG - chr1_1:1015565-1015584 Msa0000180:intron 30.0%
TGTGTGTTTGAATTACACAA+TGG - chr1_1:1015646-1015665 Msa0000180:intron 30.0%
ATCACAACCAATCAAATATG+TGG + chr1_1:1015831-1015850 None:intergenic 30.0%
! GAATAGGCAAACCAAATTTT+GGG + chr1_1:1015888-1015907 None:intergenic 30.0%
! TGAATAGGCAAACCAAATTT+TGG + chr1_1:1015889-1015908 None:intergenic 30.0%
TTCATTTCCCAAACACAAAT+TGG - chr1_1:1015954-1015973 Msa0000180:intron 30.0%
CTGAATTTCCAATTTGTGTT+TGG + chr1_1:1015965-1015984 None:intergenic 30.0%
TAGTCCAAGAATAATTTCAG+AGG - chr1_1:1016030-1016049 Msa0000180:intron 30.0%
!!! ACTGATACTACCTTATTTTC+AGG - chr1_1:1016187-1016206 Msa0000180:CDS 30.0%
!!! CTACCTTATTTTCAGGTTTT+TGG - chr1_1:1016194-1016213 Msa0000180:CDS 30.0%
GTTGTACTTTATAAACCCTA+AGG - chr1_1:1016456-1016475 Msa0000180:intron 30.0%
CCTTTCTATTAATCAACCTT+AGG + chr1_1:1016475-1016494 None:intergenic 30.0%
! CCTAAGGTTGATTAATAGAA+AGG - chr1_1:1016472-1016491 Msa0000180:CDS 30.0%
TGATTAATAGAAAGGTGATG+CGG - chr1_1:1016480-1016499 Msa0000180:CDS 30.0%
! TATCTTTTTACCTTTGAACC+AGG - chr1_1:1016585-1016604 Msa0000180:intron 30.0%
TTCCAAGATATACCTTTAGT+TGG - chr1_1:1016654-1016673 Msa0000180:intron 30.0%
! TCGTTTTATATATGCTTAGC+TGG - chr1_1:1016897-1016916 Msa0000180:intron 30.0%
! TATATGATTTGAGATGGAAG+AGG + chr1_1:1017531-1017550 None:intergenic 30.0%
!! TTCCATTTTATGATGGTGAT+TGG + chr1_1:1017558-1017577 None:intergenic 30.0%
! CGAGAAATTCCATTTTATGA+TGG + chr1_1:1017565-1017584 None:intergenic 30.0%
TGACTTCTGAACAGTTTATT+TGG - chr1_1:1017610-1017629 Msa0000180:intron 30.0%
GACTTCTGAACAGTTTATTT+GGG - chr1_1:1017611-1017630 Msa0000180:intron 30.0%
CAACTTAATTAAGCGGTTAT+CGG + chr1_1:1017924-1017943 None:intergenic 30.0%
ATCCTCAAAAGAAAGAGAAA+GGG + chr1_1:1017961-1017980 None:intergenic 30.0%
AATCCTCAAAAGAAAGAGAA+AGG + chr1_1:1017962-1017981 None:intergenic 30.0%
!! TTCTCTTTCTTTTGAGGATT+TGG - chr1_1:1017962-1017981 Msa0000180:intron 30.0%
TGATGATTTCTTTAACTACC+AGG - chr1_1:1018118-1018137 Msa0000180:intron 30.0%
GATGATTTCTTTAACTACCA+GGG - chr1_1:1018119-1018138 Msa0000180:intron 30.0%
TATTATTGAGACCCTTACAA+TGG - chr1_1:1018568-1018587 Msa0000180:CDS 30.0%
!! TATAGTTAACTTGTGGTGAT+GGG + chr1_1:1018611-1018630 None:intergenic 30.0%
! CATCATCTATAGTTAACTTG+TGG + chr1_1:1018618-1018637 None:intergenic 30.0%
ATGCAGCTTATAATGTGATA+TGG - chr1_1:1018738-1018757 Msa0000180:CDS 30.0%
ATTACCCTTTCCAACTTCTT+TGG - chr1_1:1012598-1012617 Msa0000180:three_prime_UTR 35.0%
GAATCCAAAGAAGTTGGAAA+GGG + chr1_1:1012605-1012624 None:intergenic 35.0%
AGAATCCAAAGAAGTTGGAA+AGG + chr1_1:1012606-1012625 None:intergenic 35.0%
GAGAAAGAATCCAAAGAAGT+TGG + chr1_1:1012611-1012630 None:intergenic 35.0%
TTCTGCTTTATCCATGTTAG+TGG + chr1_1:1012895-1012914 None:intergenic 35.0%
TGAAGAAGAAGATAAGGAAG+AGG - chr1_1:1012929-1012948 Msa0000180:CDS 35.0%
GAAGAAGAAGATAAGGAAGA+GGG - chr1_1:1012930-1012949 Msa0000180:CDS 35.0%
CTTCTTCTACTGAAAATGAG+AGG - chr1_1:1012961-1012980 Msa0000180:CDS 35.0%
CTGAAAATGAGAGGAATTCA+AGG - chr1_1:1012970-1012989 Msa0000180:CDS 35.0%
AAAAATAGGACTCACGCAAA+TGG + chr1_1:1013029-1013048 None:intergenic 35.0%
! AACTCCCATTGTGATTGTTT+TGG - chr1_1:1013146-1013165 Msa0000180:CDS 35.0%
GAAGCCAAAACAATCACAAT+GGG + chr1_1:1013153-1013172 None:intergenic 35.0%
AGAAGCCAAAACAATCACAA+TGG + chr1_1:1013154-1013173 None:intergenic 35.0%
CCTGTATAAACTCTTACCAT+TGG + chr1_1:1013260-1013279 None:intergenic 35.0%
CCAATGGTAAGAGTTTATAC+AGG - chr1_1:1013257-1013276 Msa0000180:CDS 35.0%
AAGAGTTTATACAGGGAATG+AGG - chr1_1:1013265-1013284 Msa0000180:CDS 35.0%
CAGAAGTAAGACAAAGTACA+TGG - chr1_1:1013321-1013340 Msa0000180:intron 35.0%
!! GAAAGTACCACTCAAGATAA+AGG - chr1_1:1013541-1013560 Msa0000180:intron 35.0%
CTACTACGCACAATTTATGT+TGG + chr1_1:1013635-1013654 None:intergenic 35.0%
TGCACCTATAGAAGAAAAGA+AGG - chr1_1:1013683-1013702 Msa0000180:intron 35.0%
ACCTATAGAAGAAAAGAAGG+TGG - chr1_1:1013686-1013705 Msa0000180:intron 35.0%
! TCCACCTTCTTTTCTTCTAT+AGG + chr1_1:1013690-1013709 None:intergenic 35.0%
AAGGAGATTCAAATCACAAG+AGG - chr1_1:1013781-1013800 Msa0000180:intron 35.0%
ATTCAAATCACAAGAGGTAG+AGG - chr1_1:1013787-1013806 Msa0000180:intron 35.0%
! TACTTTCCATGATTAGCTGT+TGG - chr1_1:1014149-1014168 Msa0000180:intron 35.0%
! GATTTTCCAACAGCTAATCA+TGG + chr1_1:1014158-1014177 None:intergenic 35.0%
GGAAAGTGAGCATAAATAGT+TGG - chr1_1:1014363-1014382 Msa0000180:intron 35.0%
TTGTGCATACTAACAGCTTT+AGG + chr1_1:1014460-1014479 None:intergenic 35.0%
TGCACAAATTAATCTCCGAA+TGG - chr1_1:1014473-1014492 Msa0000180:intron 35.0%
GCACAAATTAATCTCCGAAT+GGG - chr1_1:1014474-1014493 Msa0000180:intron 35.0%
!! GTGATAACTTGTTTCATCAC+TGG + chr1_1:1014713-1014732 None:intergenic 35.0%
CCTGATACATATCTGCAAAA+CGG + chr1_1:1014923-1014942 None:intergenic 35.0%
TATCAAATGCCTTCGAGAAA+TGG - chr1_1:1014967-1014986 Msa0000180:intron 35.0%
ATCAAATGCCTTCGAGAAAT+GGG - chr1_1:1014968-1014987 Msa0000180:intron 35.0%
TTGGCTCCATAAAATTCTTG+GGG + chr1_1:1015239-1015258 None:intergenic 35.0%
GAGCCAAATTAATAGGATCT+TGG - chr1_1:1015252-1015271 Msa0000180:intron 35.0%
CCTCCAAGATCCTATTAATT+TGG + chr1_1:1015258-1015277 None:intergenic 35.0%
CCAAATTAATAGGATCTTGG+AGG - chr1_1:1015255-1015274 Msa0000180:intron 35.0%
CAGTAAGTACTATGTACTTG+CGG - chr1_1:1015507-1015526 Msa0000180:intron 35.0%
GTGTTTGAATTACACAATGG+TGG - chr1_1:1015649-1015668 Msa0000180:intron 35.0%
ACTCACGCATTAAAAACGTT+TGG - chr1_1:1015781-1015800 Msa0000180:intron 35.0%
GCTCTTCAATACCCAAAATT+TGG - chr1_1:1015874-1015893 Msa0000180:intron 35.0%
!! GCTACCTCTGAAATTATTCT+TGG + chr1_1:1016037-1016056 None:intergenic 35.0%
GAATAATTTCAGAGGTAGCT+CGG - chr1_1:1016038-1016057 Msa0000180:intron 35.0%
GATGATGCATGTATTATGTC+AGG + chr1_1:1016070-1016089 None:intergenic 35.0%
ATAATACATGCATCATCACC+AGG - chr1_1:1016073-1016092 Msa0000180:intron 35.0%
GCACCAAAAACCTGAAAATA+AGG + chr1_1:1016200-1016219 None:intergenic 35.0%
GTATGATAGGACATGACAAT+TGG + chr1_1:1016251-1016270 None:intergenic 35.0%
TGAAACTTACACTGGTACAT+GGG + chr1_1:1016273-1016292 None:intergenic 35.0%
AATCTGACTGAAACTTACAC+TGG + chr1_1:1016281-1016300 None:intergenic 35.0%
!! TATGTTGGAAGTGTTTGACA+TGG - chr1_1:1016413-1016432 Msa0000180:intron 35.0%
GGTATATCTTGGAATGTATC+TGG + chr1_1:1016648-1016667 None:intergenic 35.0%
! AGCCAACTAAAGGTATATCT+TGG + chr1_1:1016659-1016678 None:intergenic 35.0%
!! CAATTTTGCTGCATTGACAA+AGG + chr1_1:1016957-1016976 None:intergenic 35.0%
CTTTGTCAATGCAGCAAAAT+TGG - chr1_1:1016955-1016974 Msa0000180:intron 35.0%
!! AAGATTCGTCTTTGGAACAA+AGG - chr1_1:1017015-1017034 Msa0000180:intron 35.0%
TTAATCGCATTTCGTGTGAA+CGG + chr1_1:1017071-1017090 None:intergenic 35.0%
ACGAAATGCGATTAAGACTA+AGG - chr1_1:1017076-1017095 Msa0000180:intron 35.0%
! CAGTTTTCATCTTACAGCAA+CGG - chr1_1:1017147-1017166 Msa0000180:intron 35.0%
! AAACCCTTGATAGTTCATGT+TGG - chr1_1:1017180-1017199 Msa0000180:intron 35.0%
CTTGGAGTTGAAAAGAGTTT+AGG - chr1_1:1017207-1017226 Msa0000180:intron 35.0%
GTCATAATAAGTCACCTGTA+CGG + chr1_1:1017425-1017444 None:intergenic 35.0%
ATATCTGTTCCAGTTGTGTA+TGG - chr1_1:1017459-1017478 Msa0000180:intron 35.0%
!! GTATGGCAGCTTTTAACTAA+TGG - chr1_1:1017476-1017495 Msa0000180:intron 35.0%
GGCCATTATATGATTTGAGA+TGG + chr1_1:1017537-1017556 None:intergenic 35.0%
!! TCTTTCTTTTGAGGATTTGG+AGG - chr1_1:1017965-1017984 Msa0000180:intron 35.0%
GAGCTAGAGAAAATGTTTGA+AGG - chr1_1:1018144-1018163 Msa0000180:intron 35.0%
TATTCACAGGAATGTTAGGA+GGG - chr1_1:1018178-1018197 Msa0000180:intron 35.0%
! AATAATATCTGGAATGCCTC+CGG + chr1_1:1018325-1018344 None:intergenic 35.0%
TGATCTGCAGGAATAATATC+TGG + chr1_1:1018336-1018355 None:intergenic 35.0%
ATTATTCCTGCAGATCAAGA+AGG - chr1_1:1018339-1018358 Msa0000180:intron 35.0%
ACAGGTTATCTCTATAATCC+AGG - chr1_1:1018366-1018385 Msa0000180:intron 35.0%
CAGGTTATCTCTATAATCCA+GGG - chr1_1:1018367-1018386 Msa0000180:intron 35.0%
AGGTTATCTCTATAATCCAG+GGG - chr1_1:1018368-1018387 Msa0000180:intron 35.0%
AACTCTTTGTCGAACAAAAG+GGG + chr1_1:1018423-1018442 None:intergenic 35.0%
CAACTCTTTGTCGAACAAAA+GGG + chr1_1:1018424-1018443 None:intergenic 35.0%
TCAACTCTTTGTCGAACAAA+AGG + chr1_1:1018425-1018444 None:intergenic 35.0%
AAAGAGTTGAGAGAAACCAT+AGG - chr1_1:1018435-1018454 Msa0000180:CDS 35.0%
AAAAGCTGCACGTAATGAAA+TGG - chr1_1:1018458-1018477 Msa0000180:CDS 35.0%
CGTTTACTGATCCATTGTAA+GGG + chr1_1:1018582-1018601 None:intergenic 35.0%
ACGTTTACTGATCCATTGTA+AGG + chr1_1:1018583-1018602 None:intergenic 35.0%
!! CTATAGTTAACTTGTGGTGA+TGG + chr1_1:1018612-1018631 None:intergenic 35.0%
GTGTTAAATCAAACCAAGCA+AGG + chr1_1:1018673-1018692 None:intergenic 35.0%
AATAGGGTCATGAAGGATTT+AGG + chr1_1:1018810-1018829 None:intergenic 35.0%
TAGATAGAATAGGGTCATGA+AGG + chr1_1:1018817-1018836 None:intergenic 35.0%
GAAAGGGTAATGTGAGTGAA+TGG + chr1_1:1012589-1012608 None:intergenic 40.0%
! GGTATGATGATGAAGTGGAA+AGG + chr1_1:1012734-1012753 None:intergenic 40.0%
! AGAAGGGTATGATGATGAAG+TGG + chr1_1:1012739-1012758 None:intergenic 40.0%
!! TAGTGTTGACTTGATAGCGT+TGG + chr1_1:1013204-1013223 None:intergenic 40.0%
CAAGTCAACACTATAACCAG+TGG - chr1_1:1013211-1013230 Msa0000180:CDS 40.0%
TAACCAGTGGTGTAATGTCT+AGG - chr1_1:1013224-1013243 Msa0000180:CDS 40.0%
TTTCCTAGACATTACACCAC+TGG + chr1_1:1013230-1013249 None:intergenic 40.0%
! TCTAGGAAAGTGTAGTCCAA+TGG - chr1_1:1013241-1013260 Msa0000180:CDS 40.0%
TTGTCTTACTTCTGCTCAGA+GGG + chr1_1:1013315-1013334 None:intergenic 40.0%
TTTGTCTTACTTCTGCTCAG+AGG + chr1_1:1013316-1013335 None:intergenic 40.0%
TTACACCTCTAAGCTAGGAA+CGG + chr1_1:1013371-1013390 None:intergenic 40.0%
TCAACTTACACCTCTAAGCT+AGG + chr1_1:1013376-1013395 None:intergenic 40.0%
ACCATTAAATTCAAGCTGGG+TGG - chr1_1:1013480-1013499 Msa0000180:intron 40.0%
ACCACCCAGCTTGAATTTAA+TGG + chr1_1:1013484-1013503 None:intergenic 40.0%
TTCAAGCTGGGTGGTTTAAA+TGG - chr1_1:1013489-1013508 Msa0000180:intron 40.0%
TTATCGGACATCTGTAAGAC+TGG - chr1_1:1013572-1013591 Msa0000180:intron 40.0%
AATTGTGCGTAGTAGAGATG+AGG - chr1_1:1013640-1013659 Msa0000180:intron 40.0%
TAGTAGAGATGAGGATGTTG+CGG - chr1_1:1013649-1013668 Msa0000180:intron 40.0%
AGGATGTTGCGGTAAGATTA+GGG - chr1_1:1013660-1013679 Msa0000180:intron 40.0%
AGAAGGTGGAAACTAGACTT+AGG - chr1_1:1013700-1013719 Msa0000180:intron 40.0%
AAGGAGAGTAGATCAGAAGA+AGG - chr1_1:1013762-1013781 Msa0000180:intron 40.0%
TTTGTTTGCTTAGCAGTGTG+TGG - chr1_1:1014120-1014139 Msa0000180:intron 40.0%
! TACACCTTGGTCTTTGAAAG+TGG - chr1_1:1014415-1014434 Msa0000180:CDS 40.0%
GAATGTGAAGTTGACCCATT+CGG + chr1_1:1014491-1014510 None:intergenic 40.0%
TCTTTACTAATCCACCGTTC+GGG + chr1_1:1014631-1014650 None:intergenic 40.0%
GTCTTTACTAATCCACCGTT+CGG + chr1_1:1014632-1014651 None:intergenic 40.0%
! GGATTAGTAAAGACGAAGGA+TGG - chr1_1:1014638-1014657 Msa0000180:CDS 40.0%
TCTGCATTGCATTCCAATTG+AGG - chr1_1:1014781-1014800 Msa0000180:intron 40.0%
! CCGTTTTGCAGATATGTATC+AGG - chr1_1:1014920-1014939 Msa0000180:intron 40.0%
ATGGTTGTGACAACGCATAA+AGG - chr1_1:1015209-1015228 Msa0000180:CDS 40.0%
! GGAGTTCCCCAAGAATTTTA+TGG - chr1_1:1015230-1015249 Msa0000180:CDS 40.0%
CGCAAGTACATAGTACTTAC+TGG + chr1_1:1015509-1015528 None:intergenic 40.0%
CTGAAACTTACACTGGTACA+TGG + chr1_1:1016274-1016293 None:intergenic 40.0%
AAGAGCCGTGTTATCTAAAC+TGG + chr1_1:1016326-1016345 None:intergenic 40.0%
CAACAAGATGATGTCTGATC+TGG - chr1_1:1016367-1016386 Msa0000180:intron 40.0%
GTACTTATGACCAACCACAT+CGG + chr1_1:1016689-1016708 None:intergenic 40.0%
TGTCAATGCAGCAAAATTGG+TGG - chr1_1:1016958-1016977 Msa0000180:intron 40.0%
CAAAGACGAATCTTGTTAGC+TGG + chr1_1:1017009-1017028 None:intergenic 40.0%
CAGCTAACAAGATTCGTCTT+TGG - chr1_1:1017007-1017026 Msa0000180:intron 40.0%
TGAACTATCAAGGGTTTCTC+AGG + chr1_1:1017177-1017196 None:intergenic 40.0%
CGTCCAACATGAACTATCAA+GGG + chr1_1:1017186-1017205 None:intergenic 40.0%
! CCTTGATAGTTCATGTTGGA+CGG - chr1_1:1017184-1017203 Msa0000180:intron 40.0%
TGTTTGACACCTGAACCAAA+TGG - chr1_1:1017342-1017361 Msa0000180:intron 40.0%
!! CTGAACCAAATGGTTTTGCA+GGG - chr1_1:1017352-1017371 Msa0000180:intron 40.0%
TAAAAGCTGCCATACACAAC+TGG + chr1_1:1017471-1017490 None:intergenic 40.0%
GGCCAATCACCATCATAAAA+TGG - chr1_1:1017553-1017572 Msa0000180:intron 40.0%
! TGCCCTTTCTCTTTCTTTTG+AGG - chr1_1:1017956-1017975 Msa0000180:intron 40.0%
GATTTCTTTAACTACCAGGG+AGG - chr1_1:1018122-1018141 Msa0000180:intron 40.0%
AACATTCCTGTGAATACTGC+AGG + chr1_1:1018174-1018193 None:intergenic 40.0%
GCAGTATTCACAGGAATGTT+AGG - chr1_1:1018174-1018193 Msa0000180:intron 40.0%
GTATTCACAGGAATGTTAGG+AGG - chr1_1:1018177-1018196 Msa0000180:intron 40.0%
ATTCACAGGAATGTTAGGAG+GGG - chr1_1:1018179-1018198 Msa0000180:intron 40.0%
! AACACTTGGCTTCGTTGTTT+TGG - chr1_1:1018260-1018279 Msa0000180:intron 40.0%
! GTTTTACCTTCTTGATCTGC+AGG + chr1_1:1018348-1018367 None:intergenic 40.0%
GCAGATCAAGAAGGTAAAAC+AGG - chr1_1:1018348-1018367 Msa0000180:intron 40.0%
! ATTACGTGCAGCTTTTCCTA+TGG + chr1_1:1018454-1018473 None:intergenic 40.0%
TTCATTTCGAACCTTTCGTG+TGG + chr1_1:1018505-1018524 None:intergenic 40.0%
AACAATACAATGCTGCCATC+TGG - chr1_1:1018523-1018542 Msa0000180:CDS 40.0%
GGAACAATCGTACTAAGCTT+GGG + chr1_1:1018652-1018671 None:intergenic 40.0%
AGGAACAATCGTACTAAGCT+TGG + chr1_1:1018653-1018672 None:intergenic 40.0%
TAGTACGATTGTTCCTTGCT+TGG - chr1_1:1018657-1018676 Msa0000180:CDS 40.0%
TGTGCTTGAAGCCACTAACA+TGG - chr1_1:1012881-1012900 Msa0000180:CDS 45.0%
ACAAAGAGAGCAATTCGACG+AGG + chr1_1:1012996-1013015 None:intergenic 45.0%
AAGCTGGGTGGTTTAAATGG+AGG - chr1_1:1013492-1013511 Msa0000180:intron 45.0%
GAGGATGTTGCGGTAAGATT+AGG - chr1_1:1013659-1013678 Msa0000180:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_1:1013926-1013945 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_1:1013927-1013946 None:intergenic 45.0%
!! GTTGCCACTTTCAAAGACCA+AGG + chr1_1:1014422-1014441 None:intergenic 45.0%
AGTGGCAACATGAGTTGCTT+TGG - chr1_1:1014433-1014452 Msa0000180:intron 45.0%
!! CGGTGGATTAGTAAAGACGA+AGG - chr1_1:1014634-1014653 Msa0000180:CDS 45.0%
! AGACGAAGGATGGATTTGTG+AGG - chr1_1:1014648-1014667 Msa0000180:intron 45.0%
! GAAGGATGGATTTGTGAGGT+CGG - chr1_1:1014652-1014671 Msa0000180:intron 45.0%
TACGTTCTGATACCAAGGGA+GGG + chr1_1:1015993-1016012 None:intergenic 45.0%
TGCATCATCACCAGGCATAA+TGG - chr1_1:1016081-1016100 Msa0000180:intron 45.0%
TCATCACCAGGCATAATGGT+TGG - chr1_1:1016085-1016104 Msa0000180:intron 45.0%
CACTGGTACATGGGTATGAT+AGG + chr1_1:1016264-1016283 None:intergenic 45.0%
CGGTTTCACTAGCCAACTAA+AGG + chr1_1:1016669-1016688 None:intergenic 45.0%
ATTTCGTGTGAACGGAATCG+TGG + chr1_1:1017063-1017082 None:intergenic 45.0%
CCGTCCAACATGAACTATCA+AGG + chr1_1:1017187-1017206 None:intergenic 45.0%
ATAGTTCATGTTGGACGGCT+TGG - chr1_1:1017189-1017208 Msa0000180:intron 45.0%
! CCTGCAAAACCATTTGGTTC+AGG + chr1_1:1017354-1017373 None:intergenic 45.0%
!! CCTGAACCAAATGGTTTTGC+AGG - chr1_1:1017351-1017370 Msa0000180:intron 45.0%
CATGACCCTGCAAAACCATT+TGG + chr1_1:1017360-1017379 None:intergenic 45.0%
!! CAAATGGTTTTGCAGGGTCA+TGG - chr1_1:1017358-1017377 Msa0000180:intron 45.0%
ATGAAAGCAACTCGAGCTTC+AGG + chr1_1:1017392-1017411 None:intergenic 45.0%
! GAAGCTCGAGTTGCTTTCAT+CGG - chr1_1:1017392-1017411 Msa0000180:intron 45.0%
! AGAAAGAGAAAGGGCATGCT+TGG + chr1_1:1017952-1017971 None:intergenic 45.0%
GGACTGAAATCTCTAGACAG+AGG + chr1_1:1017999-1018018 None:intergenic 45.0%
CTCTCTCAAGCATATGCTAG+TGG - chr1_1:1018207-1018226 Msa0000180:intron 45.0%
! CCAAGTGTTTCTGACTCTGA+AGG + chr1_1:1018249-1018268 None:intergenic 45.0%
CCTTCAGAGTCAGAAACACT+TGG - chr1_1:1018246-1018265 Msa0000180:intron 45.0%
!!! ACTTGGCTTCGTTGTTTTGG+AGG - chr1_1:1018263-1018282 Msa0000180:intron 45.0%
!!! TGTTTTGGAGGCCATGTCTT+CGG - chr1_1:1018275-1018294 Msa0000180:intron 45.0%
!! TTCTTATATTTATTAAATTA+TGG - chr1_1:1016115-1016134 Msa0000180:intron 5.0%
! GCTTGAAAAGAGCACAACCG+TGG + chr1_1:1012831-1012850 None:intergenic 50.0%
AGGACTCACGCAAATGGAGA+AGG + chr1_1:1013023-1013042 None:intergenic 50.0%
CTGGGTGGTTTAAATGGAGG+AGG - chr1_1:1013495-1013514 Msa0000180:intron 50.0%
GCATGTAGAGAGAAGACCCA+CGG - chr1_1:1013731-1013750 Msa0000180:intron 50.0%
GGTCGGCTACATGGATCAAA+CGG + chr1_1:1013905-1013924 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1_1:1013922-1013941 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr1_1:1013928-1013947 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr1_1:1013925-1013944 Msa0000180:intron 50.0%
TCGGGCAAGTAGGTAACACA+TGG + chr1_1:1014613-1014632 None:intergenic 50.0%
GTGTTACCTACTTGCCCGAA+CGG - chr1_1:1014614-1014633 Msa0000180:CDS 50.0%
CCTCATCTCCCATTTCTCGA+AGG + chr1_1:1014979-1014998 None:intergenic 50.0%
CCTTCGAGAAATGGGAGATG+AGG - chr1_1:1014976-1014995 Msa0000180:intron 50.0%
AATTCAGCTTTCCCCTCCCT+TGG - chr1_1:1015978-1015997 Msa0000180:intron 50.0%
ACGTTCTGATACCAAGGGAG+GGG + chr1_1:1015992-1016011 None:intergenic 50.0%
GTACGTTCTGATACCAAGGG+AGG + chr1_1:1015994-1016013 None:intergenic 50.0%
GCGGTACGTTCTGATACCAA+GGG + chr1_1:1015997-1016016 None:intergenic 50.0%
AGCGGTACGTTCTGATACCA+AGG + chr1_1:1015998-1016017 None:intergenic 50.0%
TCAGAACGTACCGCTCTCTT+TGG - chr1_1:1016003-1016022 Msa0000180:intron 50.0%
GGACTAAGTGCCAAAGAGAG+CGG + chr1_1:1016016-1016035 None:intergenic 50.0%
TGCAGACCAACCATTATGCC+TGG + chr1_1:1016094-1016113 None:intergenic 50.0%
GTCGGAGACATAGACACACT+TGG - chr1_1:1016513-1016532 Msa0000180:intron 50.0%
GGAACAGCAACCTGGTTCAA+AGG + chr1_1:1016598-1016617 None:intergenic 50.0%
AAGCTGTTGGAACAGCAACC+TGG + chr1_1:1016606-1016625 None:intergenic 50.0%
GTTGGCTAGTGAAACCGATG+TGG - chr1_1:1016672-1016691 Msa0000180:intron 50.0%
GCTAGTGAAACCGATGTGGT+TGG - chr1_1:1016676-1016695 Msa0000180:intron 50.0%
!! TGGTGCCATCTGTTGCCATT+GGG - chr1_1:1016818-1016837 Msa0000180:intron 50.0%
CATTGGGAGGGATCTTCAAG+CGG - chr1_1:1016834-1016853 Msa0000180:intron 50.0%
! CGAGTTGCTTTCATCGGAGA+TGG - chr1_1:1017398-1017417 Msa0000180:intron 50.0%
!! CATTTTCTCTAGCTCCTCCC+TGG + chr1_1:1018139-1018158 None:intergenic 50.0%
GGTATGCCTGCAGTATTCAC+AGG - chr1_1:1018165-1018184 Msa0000180:intron 50.0%
!!! GTTTTGGAGGCCATGTCTTC+GGG - chr1_1:1018276-1018295 Msa0000180:intron 50.0%
!! TTTTGGAGGCCATGTCTTCG+GGG - chr1_1:1018277-1018296 Msa0000180:intron 50.0%
AAGCAGTCTTCAAGATCCCC+TGG + chr1_1:1018387-1018406 None:intergenic 50.0%
! ACAATGCTGCCATCTGGTTC+TGG - chr1_1:1018529-1018548 Msa0000180:CDS 50.0%
TTTCTTGCGCCAGAACCAGA+TGG + chr1_1:1018541-1018560 None:intergenic 50.0%
!! TCTGGTTCTGGCGCAAGAAA+AGG - chr1_1:1018541-1018560 Msa0000180:CDS 50.0%
!! CTGGTTCTGGCGCAAGAAAA+GGG - chr1_1:1018542-1018561 Msa0000180:CDS 50.0%
! AAGACCCACGGACTGTGGTA+AGG - chr1_1:1013743-1013762 Msa0000180:intron 55.0%
CTCTCCTTACCACAGTCCGT+GGG + chr1_1:1013750-1013769 None:intergenic 55.0%
ACTCTCCTTACCACAGTCCG+TGG + chr1_1:1013751-1013770 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1_1:1013914-1013933 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_1:1013913-1013932 Msa0000180:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_1:1013914-1013933 Msa0000180:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_1:1013920-1013939 Msa0000180:intron 55.0%
TTACCTACTTGCCCGAACGG+TGG - chr1_1:1014617-1014636 Msa0000180:CDS 55.0%
AATCCACCGTTCGGGCAAGT+AGG + chr1_1:1014623-1014642 None:intergenic 55.0%
TGATGCGGCTTCTCTGCAGT+CGG - chr1_1:1016495-1016514 Msa0000180:CDS 55.0%
CAACAGATGGCACCAGAGTC+AGG + chr1_1:1016813-1016832 None:intergenic 55.0%
!! CTGGTGCCATCTGTTGCCAT+TGG - chr1_1:1016817-1016836 Msa0000180:intron 55.0%
TGCCATCTGTTGCCATTGGG+AGG - chr1_1:1016821-1016840 Msa0000180:intron 55.0%
GCCATCTGTTGCCATTGGGA+GGG - chr1_1:1016822-1016841 Msa0000180:intron 55.0%
TCCCTCCCAATGGCAACAGA+TGG + chr1_1:1016826-1016845 None:intergenic 55.0%
CGCTTGAAGATCCCTCCCAA+TGG + chr1_1:1016836-1016855 None:intergenic 55.0%
CAAGCGGCTAGAGTAACAGC+AGG - chr1_1:1016850-1016869 Msa0000180:intron 55.0%
CGTGTGAACGGAATCGTGGA+TGG + chr1_1:1017059-1017078 None:intergenic 55.0%
TCATCGGAGATGGACCGTAC+AGG - chr1_1:1017408-1017427 Msa0000180:intron 55.0%
CACAGGTATCCCCGAAGACA+TGG + chr1_1:1018289-1018308 None:intergenic 55.0%
CATGTCTTCGGGGATACCTG+TGG - chr1_1:1018287-1018306 Msa0000180:intron 55.0%
TTGGAAGGCAGCCACACGAA+AGG - chr1_1:1018491-1018510 Msa0000180:CDS 55.0%
GCGGACCGTTCCTAGCTTAG+AGG - chr1_1:1013363-1013382 Msa0000180:intron 60.0%
! GAGAGAAGACCCACGGACTG+TGG - chr1_1:1013738-1013757 Msa0000180:intron 60.0%
CAGAGCAGCTGACCTGACTC+TGG - chr1_1:1016798-1016817 Msa0000180:intron 60.0%
GTCTTCGGGGATACCTGTGG+TGG - chr1_1:1018290-1018309 Msa0000180:intron 60.0%
CCTGTGGTGGCAGCACGCGC+CGG - chr1_1:1018303-1018322 Msa0000180:intron 75.0%
! CCGGCGCGTGCTGCCACCAC+AGG + chr1_1:1018306-1018325 None:intergenic 80.0%
! GTGGTGGCAGCACGCGCCGG+AGG - chr1_1:1018306-1018325 Msa0000180:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 1012558 1018903 1012558 ID=Msa0000180;Name=Msa0000180
chr1_1 mRNA 1012558 1018903 1012558 ID=Msa0000180-mRNA-1;Parent=Msa0000180;Name=Msa0000180-mRNA-1;_AED=0.12;_eAED=0.12;_QI=141|0.88|0.9|1|1|1|10|268|484
chr1_1 exon 1012558 1013321 1012558 ID=Msa0000180-mRNA-1:exon:120;Parent=Msa0000180-mRNA-1
chr1_1 exon 1014032 1014088 1014032 ID=Msa0000180-mRNA-1:exon:119;Parent=Msa0000180-mRNA-1
chr1_1 exon 1014220 1014297 1014220 ID=Msa0000180-mRNA-1:exon:118;Parent=Msa0000180-mRNA-1
chr1_1 exon 1014364 1014451 1014364 ID=Msa0000180-mRNA-1:exon:117;Parent=Msa0000180-mRNA-1
chr1_1 exon 1014590 1014660 1014590 ID=Msa0000180-mRNA-1:exon:116;Parent=Msa0000180-mRNA-1
chr1_1 exon 1015179 1015252 1015179 ID=Msa0000180-mRNA-1:exon:115;Parent=Msa0000180-mRNA-1
chr1_1 exon 1015359 1015476 1015359 ID=Msa0000180-mRNA-1:exon:114;Parent=Msa0000180-mRNA-1
chr1_1 exon 1016185 1016255 1016185 ID=Msa0000180-mRNA-1:exon:113;Parent=Msa0000180-mRNA-1
chr1_1 exon 1016464 1016530 1016464 ID=Msa0000180-mRNA-1:exon:112;Parent=Msa0000180-mRNA-1
chr1_1 exon 1018428 1018903 1018428 ID=Msa0000180-mRNA-1:exon:111;Parent=Msa0000180-mRNA-1
chr1_1 five_prime_UTR 1018763 1018903 1018763 ID=Msa0000180-mRNA-1:five_prime_utr;Parent=Msa0000180-mRNA-1
chr1_1 CDS 1018428 1018762 1018428 ID=Msa0000180-mRNA-1:cds;Parent=Msa0000180-mRNA-1
chr1_1 CDS 1016464 1016530 1016464 ID=Msa0000180-mRNA-1:cds;Parent=Msa0000180-mRNA-1
chr1_1 CDS 1016185 1016255 1016185 ID=Msa0000180-mRNA-1:cds;Parent=Msa0000180-mRNA-1
chr1_1 CDS 1015359 1015476 1015359 ID=Msa0000180-mRNA-1:cds;Parent=Msa0000180-mRNA-1
chr1_1 CDS 1015179 1015252 1015179 ID=Msa0000180-mRNA-1:cds;Parent=Msa0000180-mRNA-1
chr1_1 CDS 1014590 1014660 1014590 ID=Msa0000180-mRNA-1:cds;Parent=Msa0000180-mRNA-1
chr1_1 CDS 1014364 1014451 1014364 ID=Msa0000180-mRNA-1:cds;Parent=Msa0000180-mRNA-1
chr1_1 CDS 1014220 1014297 1014220 ID=Msa0000180-mRNA-1:cds;Parent=Msa0000180-mRNA-1
chr1_1 CDS 1014032 1014088 1014032 ID=Msa0000180-mRNA-1:cds;Parent=Msa0000180-mRNA-1
chr1_1 CDS 1012826 1013321 1012826 ID=Msa0000180-mRNA-1:cds;Parent=Msa0000180-mRNA-1
chr1_1 three_prime_UTR 1012558 1012825 1012558 ID=Msa0000180-mRNA-1:three_prime_utr;Parent=Msa0000180-mRNA-1
Gene Sequence

>Msa0000180

ATGAATATGAATGCTACTTCACTCTCTATAAACCTTTCCACTTCATCATCATACCCTTCTATTGTATCCCTTAGATTTCAACGTTTTTCACCATTACAAGCAAAACCCATTAATATTTCTTGTAGAAAACCACGGTTGTGCTCTTTTCAAGCGTCAAAAACAGTGAATTGTAGAAAAAGTTTTGTGCTTGAAGCCACTAACATGGATAAAGCAGAAGTTGATTCTCATGATGAAGAAGAAGATAAGGAAGAGGGTACTTCTTCTTCTTCTACTGAAAATGAGAGGAATTCAAGGCCTCGTCGAATTGCTCTCTTTGTTGAACCTTCTCCATTTGCATATGTATCAGGATACAAAAACCGGTTTCAGAACTTTATCAAATGCCTTCGAGAAATGGGAGATGAGGTGATGGTTGTGACAACGCATAAAGGAGTTCCCCAAGAATTTTATGGAGCCAAATTAATAGGATCTTGGAGCTTTCCCCTCCCTTGGTATCAGAACGTACCGCTCTCTTTGGCACTTAGTCCAAGAATAATTTCAGAGGTAGCTCGGTTCAAGCCTGACATAATACATGCATCATCACCAGGCATAATGGTTTTTGGTGCTCTTATCATTGCAAAACTTTTGTCTGTTCCAATTGTCATGTCCTATCATACCCATGTACCAGTAGCAGCTGACCTGACTCTGGTGCCATCTGTTGCCATTGGGAGGGATCTTCAAGCGGCTAGAGTAACAGCAGCTAACAAGATTCGTCTTTGGAACAAAGGTGTTGATTCTGAAAGTTTCCATCCACGATTCCGTTCACACGAAATGCGATTAAGACTAAGCAACGGTGAACCTGAGAAACCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAAAAGAGTTTAGGTTTTATCAAAGGGGTCATGGATAAGCTTCCTGAAGCTCGAGTTGCTTTCATCGGAGATGGACCGTACAGGGAGGAGCTAGAGAAAATGTTTGAAGGTATGCCTGCAGTATTCACAGGAATGTTAGGAGGGGAAGTACTCTCTCAAGCATATGCTAGTGGAGATGTATTTATCATGCCTTCAGAGTCAGAAACACTTGGCTTCGTTGTTTTGGAGGCCATGTCTTCGGGGATACCTGTGGTGGCAGCACGCGCCGGAGGCATTCCAGATATTATTCCTGCAGATCAAGAAGGTAAAACAGGTTATCTCTATAATCCAGGGGATCTTGAAGACTGCTTGAGTAAATTGAAACCCCTTTTGTTCGACAAAGAGTTGAGAGAAACCATAGGAAAAGCTGCACGTAATGAAATGGAAAAATTTGATTGGAAGGCAGCCACACGAAAGGTTCGAAATGAACAATACAATGCTGCCATCTGGTTCTGGCGCAAGAAAAGGGCGATATTATTGAGACCCTTACAATGGATCAGTAAACGTGTTTTCCCATCACCACAAGTTAACTATAGATGA

Protein sequence

>Msa0000180

MNMNATSLSINLSTSSSYPSIVSLRFQRFSPLQAKPINISCRKPRLCSFQASKTVNCRKSFVLEATNMDKAEVDSHDEEEDKEEGTSSSSTENERNSRPRRIALFVEPSPFAYVSGYKNRFQNFIKCLREMGDEVMVVTTHKGVPQEFYGAKLIGSWSFPLPWYQNVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLSVPIVMSYHTHVPVAADLTLVPSVAIGRDLQAARVTAANKIRLWNKGVDSESFHPRFRSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLGFIKGVMDKLPEARVAFIGDGPYREELEKMFEGMPAVFTGMLGGEVLSQAYASGDVFIMPSESETLGFVVLEAMSSGIPVVAARAGGIPDIIPADQEGKTGYLYNPGDLEDCLSKLKPLLFDKELRETIGKAARNEMEKFDWKAATRKVRNEQYNAAIWFWRKKRAILLRPLQWISKRVFPSPQVNYR*