AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1433380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1433380 MtrunA17_Chr1g0210231 96.652 687 19 2 1 684 1 686 0.0 1349
Msa1433380 MtrunA17_Chr8g0360481 47.305 668 288 12 32 684 36 654 0.0 555
Msa1433380 MtrunA17_Chr1g0188261 52.381 357 163 3 44 398 12 363 2.17e-117 356
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1433380 AT3G10420.2 64.296 703 209 10 1 682 1 682 0.0 822
Msa1433380 AT3G10420.1 64.964 548 164 8 1 528 1 540 0.0 655
Msa1433380 AT1G73170.3 50.712 562 248 6 82 638 80 617 0.0 534
Msa1433380 AT1G73170.1 50.712 562 248 6 82 638 80 617 0.0 534
Msa1433380 AT1G73170.2 50.000 498 220 6 146 638 16 489 1.83e-157 465
Msa1433380 AT1G33290.1 53.714 350 148 6 57 398 19 362 2.94e-119 361
Msa1433380 AT1G33290.3 58.276 290 116 3 112 398 1 288 1.23e-112 342
Msa1433380 AT1G73170.4 42.507 367 182 6 277 638 1 343 3.79e-80 260
Msa1433380 AT1G33290.2 49.099 222 88 6 57 258 19 235 2.97e-55 191
Msa1433380 AT1G33290.2 51.389 72 34 1 327 398 216 286 7.42e-15 76.3

Find 139 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTATAATTGATGAAAT+TGG 0.186337 tig0027301:+2125 Msa1433380:CDS
GTTTCTTCATGGCTTATTTC+AGG 0.202929 tig0027301:-2826 None:intergenic
TTCAACTGTGGATGCTATTT+TGG 0.203491 tig0027301:+2618 Msa1433380:CDS
TCATCAATTATAATGGTTTC+AGG 0.225693 tig0027301:-2119 None:intergenic
TCATCGTCAATTTCAATATC+TGG 0.234846 tig0027301:-3530 None:intergenic
TTGAATCATTCAGGTAAAAT+AGG 0.252962 tig0027301:-4688 None:intergenic
TCCAATTTCATCAATTATAA+TGG 0.266424 tig0027301:-2126 None:intergenic
TTAAAATGTTGACCTGATTA+AGG 0.273025 tig0027301:-1612 None:intergenic
ACTAAACTTGGAGGGTCTTT+TGG 0.293475 tig0027301:-4578 None:intergenic
GTGGATACATCCAATGAAAT+TGG 0.294748 tig0027301:+1868 Msa1433380:CDS
TCATGGCTTATTTCAGGTAT+TGG 0.299020 tig0027301:-2820 None:intergenic
ACTATTATCACTCCATTTCA+TGG 0.305396 tig0027301:-2935 None:intergenic
TCTAACATATTTCCCTTCAT+TGG 0.328689 tig0027301:+4724 Msa1433380:three_prime_UTR
TTAAATCCGATGTTTCTTCA+TGG 0.331868 tig0027301:-2837 None:intergenic
CCTTATCTTCAGATCCTTGT+TGG 0.338669 tig0027301:+2248 Msa1433380:CDS
CCACTATTACTACGCGCTTC+AGG 0.363898 tig0027301:-1849 None:intergenic
CTATGCTGCATATTCACATT+TGG 0.364142 tig0027301:-1946 None:intergenic
ATGAACACGACATTCAGTTT+TGG 0.374118 tig0027301:-2584 None:intergenic
ATATCTGGAGACTCATTTGA+TGG 0.383132 tig0027301:-3515 None:intergenic
TCCGTCACCTCCAATTTCAT+TGG 0.385683 tig0027301:-1878 None:intergenic
TTCGTATACGGCAGGAGGTT+CGG 0.386900 tig0027301:+4383 Msa1433380:intron
CTGAATGTCGTGTTCATCAT+AGG 0.387994 tig0027301:+2590 Msa1433380:CDS
CTGAGTTACGACAGAATTCA+TGG 0.392309 tig0027301:+3277 Msa1433380:CDS
TCCAGCGATGGTTTGCGCTT+CGG 0.392463 tig0027301:-3557 None:intergenic
TGCTAAAATCATACATGATC+TGG 0.404375 tig0027301:+1535 Msa1433380:CDS
CTCGACCAACACGGCAAGTA+AGG 0.408770 tig0027301:-1499 None:intergenic
CAGTATTTGAAGTCCGTCAT+TGG 0.410784 tig0027301:+2764 Msa1433380:CDS
ATTCTTCATTATGCTTTCAA+TGG 0.418087 tig0027301:-2225 None:intergenic
AGCATGCTTCACCAAATCAT+TGG 0.420342 tig0027301:-2797 None:intergenic
TTGGTAAAACTACCTTAATC+AGG 0.424584 tig0027301:+1600 Msa1433380:CDS
TTCCTCATGCAGGCATAGGC+AGG 0.427872 tig0027301:+1905 Msa1433380:CDS
TGAAGGGAAATATGTTAGAA+TGG 0.428961 tig0027301:-4720 None:intergenic
TGCTCAAAGAGGAGTTCAAT+TGG 0.429380 tig0027301:+2181 Msa1433380:CDS
TGAGGAAGGAGGTTCTATAT+TGG 0.434005 tig0027301:+1559 Msa1433380:CDS
GGAGGTTCTATATTGGTCAT+TGG 0.436397 tig0027301:+1566 Msa1433380:CDS
ATCCCACTCGATCCATGAAA+TGG 0.438370 tig0027301:+2923 Msa1433380:CDS
GGTAGTGGTGGCGGCGGCAA+TGG 0.441263 tig0027301:+4646 Msa1433380:CDS
ATATTGGTCATTGGACCTCC+TGG 0.442400 tig0027301:+1575 Msa1433380:CDS
CAATGACGGACTTCAAATAC+TGG 0.449272 tig0027301:-2763 None:intergenic
TGAGAACAAATACAGGTAAC+TGG 0.450824 tig0027301:-3323 None:intergenic
GATCCTTGTTGGTGGTATAG+AGG 0.456580 tig0027301:+2259 Msa1433380:CDS
AGTATTTGAAGTCCGTCATT+GGG 0.460558 tig0027301:+2765 Msa1433380:CDS
ATACATGTACAAACCAATGA+AGG 0.465509 tig0027301:-4737 None:intergenic
TTGAATAGAGTGTAACTCTC+GGG 0.466591 tig0027301:+2473 Msa1433380:intron
GCTGATGCAATTCTTGCATC+CGG 0.468276 tig0027301:+3252 Msa1433380:CDS
ATAGAGTACATAGTGATTCC+TGG 0.476995 tig0027301:+4412 Msa1433380:CDS
CCTGAAGCGCGTAGTAATAG+TGG 0.478310 tig0027301:+1849 Msa1433380:CDS
TTCTTTATCGTGGAGCCAAA+GGG 0.483101 tig0027301:-3491 None:intergenic
TCAATAATTTCAGAACGTCT+TGG 0.487672 tig0027301:-4457 None:intergenic
CAAAGAGGAGTTCAATTGGT+TGG 0.488544 tig0027301:+2185 Msa1433380:CDS
CCAACAAGGATCTGAAGATA+AGG 0.493089 tig0027301:-2248 None:intergenic
ATTGGCCTTACTTGCCGTGT+TGG 0.495552 tig0027301:+1494 Msa1433380:CDS
CAATTGGTTGGAACAGCACA+TGG 0.496072 tig0027301:+2197 Msa1433380:CDS
GCTGGAAGAGATTGACGCCT+TGG 0.496312 tig0027301:+3574 Msa1433380:CDS
TATCTTCAGATCCTTGTTGG+TGG 0.497033 tig0027301:+2251 Msa1433380:CDS
GAAGGGAAATATGTTAGAAT+GGG 0.500103 tig0027301:-4719 None:intergenic
ACCGAAGCGCAAACCATCGC+TGG 0.503492 tig0027301:+3556 Msa1433380:CDS
GAGTGTAACTCTCGGGGATG+AGG 0.503582 tig0027301:+2480 Msa1433380:intron
AATCGTCAGATGCAAATCAT+TGG 0.503745 tig0027301:+1476 Msa1433380:CDS
CTCTCGGGGATGAGGAAGCC+AGG 0.505259 tig0027301:+2488 Msa1433380:CDS
CAGAGAGACTGCTAGGATGC+TGG 0.505835 tig0027301:+1816 Msa1433380:intron
GTTACCTGTATTTGTTCTCA+AGG 0.506262 tig0027301:+3326 Msa1433380:CDS
TGCAAAAGACAATTCTAGAA+AGG 0.510028 tig0027301:+2521 Msa1433380:CDS
CTTCTTTATCGTGGAGCCAA+AGG 0.510592 tig0027301:-3492 None:intergenic
ATGAAATGGAGTGATAATAG+TGG 0.514888 tig0027301:+2937 Msa1433380:CDS
ATCCTCGGGCTAGAACCCTT+TGG 0.516202 tig0027301:+3476 Msa1433380:CDS
GTACGAGTAGCAAAAGTGAT+GGG 0.518119 tig0027301:+3189 Msa1433380:CDS
GTCATTGGACCTCCTGGTGT+TGG 0.524184 tig0027301:+1581 Msa1433380:CDS
TGCATCGTATAAGTGCAATT+CGG 0.526874 tig0027301:+1453 Msa1433380:CDS
AAATCTGCTGGTAGTGGTGG+CGG 0.535701 tig0027301:+4637 Msa1433380:CDS
GGAAGAGATTGACGCCTTGG+AGG 0.536207 tig0027301:+3577 Msa1433380:CDS
GGGATGAGGAAGCCAGGAAA+AGG 0.537182 tig0027301:+2494 Msa1433380:CDS
CAAGGGAAGAATCTGCAACC+TGG 0.537532 tig0027301:-4545 None:intergenic
ATTCTGTCGTAACTCAGAAC+CGG 0.538742 tig0027301:-3271 None:intergenic
TCCAATGAAATTGGAGGTGA+CGG 0.539462 tig0027301:+1877 Msa1433380:CDS
ATTTGATGGCTTCTTTATCG+TGG 0.539478 tig0027301:-3501 None:intergenic
GGCACCTTGAGAACAAATAC+AGG 0.540365 tig0027301:-3330 None:intergenic
GCAGGAAACAGAACTAAACT+TGG 0.540809 tig0027301:-4590 None:intergenic
GATTCCTGGTGGAGAGGCTG+TGG 0.540843 tig0027301:+4426 Msa1433380:CDS
GCGTCAATCTCTTCCAGCGA+TGG 0.543519 tig0027301:-3569 None:intergenic
ATGCAGGCATAGGCAGGGCG+AGG 0.546724 tig0027301:+1911 Msa1433380:CDS
TTTGCACAAGTTCAATCTGC+CGG 0.546806 tig0027301:-4480 None:intergenic
GGAAACAGAACTAAACTTGG+AGG 0.547551 tig0027301:-4587 None:intergenic
GACGGAGATGTTCCTCATGC+AGG 0.549892 tig0027301:+1895 Msa1433380:CDS
TCTGCTGGTAGTGGTGGCGG+CGG 0.551281 tig0027301:+4640 Msa1433380:CDS
AATCATACATGATCTGGTTG+AGG 0.551401 tig0027301:+1541 Msa1433380:CDS
GGGAAATATGTTAGAATGGG+AGG 0.554166 tig0027301:-4716 None:intergenic
GATGTTCCTCATGCAGGCAT+AGG 0.555685 tig0027301:+1901 Msa1433380:CDS
GACGTTCTGAAATTATTGAC+CGG 0.556854 tig0027301:+4461 Msa1433380:CDS
CAGTTGGCTGCTGAAAAGTC+AGG 0.557070 tig0027301:+4508 Msa1433380:CDS
AGTTCCACAGCCTCTCCACC+AGG 0.563344 tig0027301:-4430 None:intergenic
TTTGAATAGAGTGTAACTCT+CGG 0.564422 tig0027301:+2472 Msa1433380:intron
GGCTGCTGAAAAGTCAGGTA+CGG 0.565693 tig0027301:+4513 Msa1433380:CDS
TTGAACTCCTCTTTGAGCAA+TGG 0.567809 tig0027301:-2177 None:intergenic
CAGGCATAGGCAGGGCGAGG+AGG 0.576115 tig0027301:+1914 Msa1433380:CDS
ATAGAAGTAACTGATGACAT+TGG 0.579181 tig0027301:+3225 Msa1433380:CDS
TACTTGCCGTGTTGGTCGAG+CGG 0.579698 tig0027301:+1502 Msa1433380:CDS
CATAGTGATTCCTGGTGGAG+AGG 0.582191 tig0027301:+4420 Msa1433380:CDS
TCAACAGCACACGTAAATGT+AGG 0.586604 tig0027301:-2553 None:intergenic
GATTGTGCAGAGAGACTGCT+AGG 0.591378 tig0027301:+1809 Msa1433380:intron
TACATGTACAAACCAATGAA+GGG 0.593601 tig0027301:-4736 None:intergenic
GATACATCCAATGAAATTGG+AGG 0.595729 tig0027301:+1871 Msa1433380:CDS
GCAAGTACCATTGCTCAAAG+AGG 0.597613 tig0027301:+2170 Msa1433380:CDS
GGTTGCAGATTCTTCCCTTG+AGG 0.597711 tig0027301:+4548 Msa1433380:CDS
GCAATGGTACCACTGTCACT+AGG 0.597867 tig0027301:+4662 Msa1433380:CDS
ATACATGATCTGGTTGAGGA+AGG 0.605235 tig0027301:+1545 Msa1433380:CDS
ACTCCATTTCATGGATCGAG+TGG 0.607616 tig0027301:-2926 None:intergenic
CAGGTACGGATCAAAACACC+AGG 0.608144 tig0027301:+4527 Msa1433380:CDS
AGTACGAGTAGCAAAAGTGA+TGG 0.608386 tig0027301:+3188 Msa1433380:CDS
AGAAAAGGGTTGTACCTCCA+AGG 0.608824 tig0027301:-3591 None:intergenic
CATGATCTGGTTGAGGAAGG+AGG 0.608961 tig0027301:+1548 Msa1433380:CDS
TTGCAGGTGTACACTTGCAT+TGG 0.612087 tig0027301:-2982 None:intergenic
AAGACAATTCTAGAAAGGAA+AGG 0.613874 tig0027301:+2526 Msa1433380:CDS
ATAGTGGATCTGTGATCAAG+AGG 0.617190 tig0027301:+2953 Msa1433380:CDS
TCCTCATGCAGGCATAGGCA+GGG 0.617902 tig0027301:+1906 Msa1433380:CDS
TTCATTGCAGTCCAATACCA+TGG 0.618171 tig0027301:+3427 Msa1433380:intron
GAAACAGAACTAAACTTGGA+GGG 0.622095 tig0027301:-4586 None:intergenic
ACTTGTGCAAAGCTATCAGT+TGG 0.624557 tig0027301:+4492 Msa1433380:CDS
CGTGTTGGTCGAGCGGTGAG+TGG 0.630353 tig0027301:+1509 Msa1433380:CDS
CTCCATTTCATGGATCGAGT+GGG 0.632603 tig0027301:-2925 None:intergenic
AATAAGCCATGAAGAAACAT+CGG 0.634610 tig0027301:+2831 Msa1433380:CDS
CGACAGAATTCATGGATCCG+TGG 0.635339 tig0027301:+3285 Msa1433380:CDS
AACATGTACAGTCGTGTATG+TGG 0.636438 tig0027301:+4769 Msa1433380:three_prime_UTR
GCCCTGCCTATGCCTGCATG+AGG 0.636859 tig0027301:-1907 None:intergenic
AGCCAAAGGGTTCTAGCCCG+AGG 0.638981 tig0027301:-3478 None:intergenic
ATGAGCTATCAATACCAGAT+CGG 0.639378 tig0027301:-1430 None:intergenic
AATAGGAAGCCTAGTGACAG+TGG 0.645088 tig0027301:-4671 None:intergenic
CACTCACCGCTCGACCAACA+CGG 0.652025 tig0027301:-1508 None:intergenic
TGAATAGAGTGTAACTCTCG+GGG 0.654334 tig0027301:+2474 Msa1433380:intron
GAACAAATACAGGTAACTGG+TGG 0.660255 tig0027301:-3320 None:intergenic
TACGAGTAGCAAAAGTGATG+GGG 0.668625 tig0027301:+3190 Msa1433380:CDS
AATGCAAGTGTACACCTGCA+AGG 0.668958 tig0027301:+2984 Msa1433380:CDS
TGACGGACTTCAAATACTGG+AGG 0.672492 tig0027301:-2760 None:intergenic
GCACCTCTATACCACCAACA+AGG 0.695466 tig0027301:-2262 None:intergenic
GAGTACATAGTGATTCCTGG+TGG 0.700030 tig0027301:+4415 Msa1433380:CDS
GGTGGAATTTCGCAACACCA+CGG 0.701018 tig0027301:-3302 None:intergenic
ACAGCACACGTAAATGTAGG+TGG 0.701363 tig0027301:-2550 None:intergenic
TCATAGGTTAGATTCAACTG+TGG 0.703566 tig0027301:+2606 Msa1433380:CDS
TTCTGACAGAGAGTATGACG+AGG 0.719203 tig0027301:+2885 Msa1433380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATTATTATGAATAAG+TGG - tig0027301:953-972 None:intergenic 10.0%
!! CTTTACATTAATTAATTAAT+TGG + tig0027301:1096-1115 Msa1433380:intron 10.0%
!! TTAAACTAGATAAAATAAAA+AGG - tig0027301:1772-1791 None:intergenic 10.0%
!!! CTTATTTTATTTCTTAATAA+CGG + tig0027301:3120-3139 Msa1433380:intron 10.0%
!!! TTATTTTATTTCTTAATAAC+GGG + tig0027301:3121-3140 Msa1433380:intron 10.0%
!!! AAAACAATTTATTGTTGTTA+AGG - tig0027301:543-562 None:intergenic 15.0%
!! TTAAACAATTGTATTTGAAT+TGG + tig0027301:4283-4302 Msa1433380:intron 15.0%
!! AACACAATAATAAATAATCT+AGG - tig0027301:4325-4344 None:intergenic 15.0%
!!! AATTTTATTGTATTCGTATA+CGG + tig0027301:4371-4390 Msa1433380:intron 15.0%
!!! ATTCCTTTTATTTTTGGTTT+TGG - tig0027301:23-42 None:intergenic 20.0%
!!! TGGTATATTCCTTTTATTTT+TGG - tig0027301:29-48 None:intergenic 20.0%
!! TGATGTAATAATTGAAGAAT+GGG - tig0027301:328-347 None:intergenic 20.0%
!! ATGATGTAATAATTGAAGAA+TGG - tig0027301:329-348 None:intergenic 20.0%
!!! TCAGTTTGTATTTTTAATGT+GGG + tig0027301:1054-1073 Msa1433380:intron 20.0%
!! GTAAAGTAAATAAAGAACAT+TGG - tig0027301:1082-1101 None:intergenic 20.0%
!! ACCATTATAATTGATGAAAT+TGG + tig0027301:2125-2144 Msa1433380:CDS 20.0%
!! TCCAATTTCATCAATTATAA+TGG - tig0027301:2129-2148 None:intergenic 20.0%
!! ATTATAAATCATAACCTTGA+AGG - tig0027301:2310-2329 None:intergenic 20.0%
!! GCAGTATTTATTTAGTTATT+TGG + tig0027301:2697-2716 Msa1433380:intron 20.0%
!! AAAATTCATTATAAGGCAAA+AGG - tig0027301:3401-3420 None:intergenic 20.0%
!! AGGAACAAAAATTCATTATA+AGG - tig0027301:3408-3427 None:intergenic 20.0%
!! AAATTAGATACTAATTGAGT+GGG - tig0027301:3618-3637 None:intergenic 20.0%
!! TGATCTTAAAAAATGTTTAC+AGG - tig0027301:4175-4194 None:intergenic 20.0%
! AGACCAAAACCAAAAATAAA+AGG + tig0027301:17-36 Msa1433380:five_prime_UTR 25.0%
! AAAAATATTCCTATACCATC+GGG - tig0027301:94-113 None:intergenic 25.0%
! CAAAAATATTCCTATACCAT+CGG - tig0027301:95-114 None:intergenic 25.0%
!! TGTTTTGTGTTCTATTCTAT+GGG - tig0027301:264-283 None:intergenic 25.0%
!!! TTGTTTTGTGTTCTATTCTA+TGG - tig0027301:265-284 None:intergenic 25.0%
!! TTTATGTTTCTGTATGTTTG+AGG - tig0027301:402-421 None:intergenic 25.0%
! ATTGAAGTTGTTATGGATTT+AGG + tig0027301:793-812 Msa1433380:CDS 25.0%
! AATTGTTTATCCAAAAACAG+AGG - tig0027301:923-942 None:intergenic 25.0%
!!! CTCAGTTTGTATTTTTAATG+TGG + tig0027301:1053-1072 Msa1433380:intron 25.0%
!!! CAGTTTGTATTTTTAATGTG+GGG + tig0027301:1055-1074 Msa1433380:intron 25.0%
! ATAACTAAGTAAATGTCGAA+AGG + tig0027301:1327-1346 Msa1433380:intron 25.0%
!!! TTGAAGAGTAATGGATATAA+TGG + tig0027301:1363-1382 Msa1433380:intron 25.0%
!! TAATGGATATAATGGTTGTT+TGG + tig0027301:1371-1390 Msa1433380:intron 25.0%
!! GTTGTTTGGTTTATTGTTAT+AGG + tig0027301:1385-1404 Msa1433380:intron 25.0%
!! TTTGGTTTATTGTTATAGGT+TGG + tig0027301:1389-1408 Msa1433380:intron 25.0%
! TTAAAATGTTGACCTGATTA+AGG - tig0027301:1615-1634 None:intergenic 25.0%
! AAAATAAAAAGGAAACTGAC+AGG - tig0027301:1761-1780 None:intergenic 25.0%
! TCATCAATTATAATGGTTTC+AGG - tig0027301:2122-2141 None:intergenic 25.0%
! ATTCTTCATTATGCTTTCAA+TGG - tig0027301:2228-2247 None:intergenic 25.0%
!!! CTCTTATTTATTTTCCTTCA+AGG + tig0027301:2293-2312 Msa1433380:intron 25.0%
!! TTGATTCAATCTTTGAAAGA+AGG - tig0027301:2375-2394 None:intergenic 25.0%
! ATCAATAAACATCATTAACG+TGG - tig0027301:2446-2465 None:intergenic 25.0%
! ATATTCCATTATAGAAGATG+AGG - tig0027301:2652-2671 None:intergenic 25.0%
!!! CTGCAAGGTAAATTATTTTT+GGG + tig0027301:2999-3018 Msa1433380:intron 25.0%
!! TAAGAAATTTGTTCCTTCAA+TGG - tig0027301:3092-3111 None:intergenic 25.0%
! GAAATTAGATACTAATTGAG+TGG - tig0027301:3619-3638 None:intergenic 25.0%
! ATAAATGCGCTAAAAAGAAA+AGG - tig0027301:3749-3768 None:intergenic 25.0%
!! TCTAAGATTAAAGTCTGTAA+AGG - tig0027301:4061-4080 None:intergenic 25.0%
! ATAACTCAAATTTCACAAGT+CGG - tig0027301:4109-4128 None:intergenic 25.0%
!! TAAACCAAATTGTAAGTTGA+GGG + tig0027301:4139-4158 Msa1433380:intron 25.0%
!!! TTTCTGATTTTTTAACTCGA+GGG + tig0027301:4233-4252 Msa1433380:intron 25.0%
! TTGAATCATTCAGGTAAAAT+AGG - tig0027301:4691-4710 None:intergenic 25.0%
!! TGAAATCTTTGTATTTTCTG+TGG - tig0027301:4835-4854 None:intergenic 25.0%
! TAAAAATCGAACTACATTTC+AGG - tig0027301:4860-4879 None:intergenic 25.0%
!! ATAGGAATATTTTTGCGTGA+CGG + tig0027301:100-119 Msa1433380:five_prime_UTR 30.0%
TTATTGGTAAGAAGAATCAG+AGG - tig0027301:175-194 None:intergenic 30.0%
! GGTTTGGTTGGTATTATTAT+TGG - tig0027301:191-210 None:intergenic 30.0%
TCTATTCTATGGGAAGAAAA+AGG - tig0027301:254-273 None:intergenic 30.0%
AAATGAAAGTGAAGAGAAGA+GGG - tig0027301:304-323 None:intergenic 30.0%
AAAATGAAAGTGAAGAGAAG+AGG - tig0027301:305-324 None:intergenic 30.0%
TAACAGACACACAAACAAAT+AGG + tig0027301:437-456 Msa1433380:five_prime_UTR 30.0%
CGTAAATCATCATGGTTAAT+GGG - tig0027301:871-890 None:intergenic 30.0%
TCCAAATAAAACAAGTCACT+TGG - tig0027301:1007-1026 None:intergenic 30.0%
! TTTTTGTCGTTGAAGAGTAA+TGG + tig0027301:1354-1373 Msa1433380:intron 30.0%
!!! GTTATAGGTTGGTGATTTTT+CGG + tig0027301:1400-1419 Msa1433380:intron 30.0%
TGCTAAAATCATACATGATC+TGG + tig0027301:1535-1554 Msa1433380:CDS 30.0%
TTGGTAAAACTACCTTAATC+AGG + tig0027301:1600-1619 Msa1433380:CDS 30.0%
! CTTTTTACTATGTCTGTATG+TGG + tig0027301:1640-1659 Msa1433380:intron 30.0%
TAGTACTAATCTCACTCATT+TGG + tig0027301:1972-1991 Msa1433380:intron 30.0%
AATTGACTGCTTCATCTTTA+TGG + tig0027301:1998-2017 Msa1433380:intron 30.0%
ATTTGCAATCTAATCTTCTG+TGG + tig0027301:2035-2054 Msa1433380:intron 30.0%
TTAAATAGATCCATCCATTC+CGG + tig0027301:2343-2362 Msa1433380:intron 30.0%
! TCAATCTTTGAAAGAAGGAT+GGG - tig0027301:2370-2389 None:intergenic 30.0%
! TTCAATCTTTGAAAGAAGGA+TGG - tig0027301:2371-2390 None:intergenic 30.0%
TTTGAATAGAGTGTAACTCT+CGG + tig0027301:2472-2491 Msa1433380:intron 30.0%
! TGCAAAAGACAATTCTAGAA+AGG + tig0027301:2521-2540 Msa1433380:CDS 30.0%
! AAGACAATTCTAGAAAGGAA+AGG + tig0027301:2526-2545 Msa1433380:CDS 30.0%
GTATTCCTCATCTTCTATAA+TGG + tig0027301:2644-2663 Msa1433380:intron 30.0%
TAGAAAATCTTCTCTGTTAC+AGG + tig0027301:2733-2752 Msa1433380:intron 30.0%
! GGATGATTTTTCCAATGATT+TGG + tig0027301:2786-2805 Msa1433380:CDS 30.0%
AATAAGCCATGAAGAAACAT+CGG + tig0027301:2831-2850 Msa1433380:CDS 30.0%
TTAAATCCGATGTTTCTTCA+TGG - tig0027301:2840-2859 None:intergenic 30.0%
ACTATTATCACTCCATTTCA+TGG - tig0027301:2938-2957 None:intergenic 30.0%
ATGAAATGGAGTGATAATAG+TGG + tig0027301:2937-2956 Msa1433380:CDS 30.0%
CCAAAAATAATTTACCTTGC+AGG - tig0027301:3001-3020 None:intergenic 30.0%
! CCTGCAAGGTAAATTATTTT+TGG + tig0027301:2998-3017 Msa1433380:intron 30.0%
AGAGAATATTATCAGGATTC+AGG + tig0027301:3037-3056 Msa1433380:intron 30.0%
! TCATTTTCATGTTCCATTGA+AGG + tig0027301:3076-3095 Msa1433380:intron 30.0%
ATAGAAGTAACTGATGACAT+TGG + tig0027301:3225-3244 Msa1433380:CDS 30.0%
ATTGAAGCAATTGTTGAAAG+AGG - tig0027301:3371-3390 None:intergenic 30.0%
TTTCAACAATTGCTTCAATG+TGG + tig0027301:3372-3391 Msa1433380:intron 30.0%
TCATCGTCAATTTCAATATC+TGG - tig0027301:3533-3552 None:intergenic 30.0%
AAATATTTCGCACAGAAGAT+GGG - tig0027301:3654-3673 None:intergenic 30.0%
TAAATATTTCGCACAGAAGA+TGG - tig0027301:3655-3674 None:intergenic 30.0%
! TTTGGGTCTTATAGAATGAT+TGG + tig0027301:3723-3742 Msa1433380:intron 30.0%
TCTAACTTATCCTGCAAAAT+TGG + tig0027301:3854-3873 Msa1433380:intron 30.0%
! ACTTTACAAACCAATTTTGC+AGG - tig0027301:3867-3886 None:intergenic 30.0%
TGAAAGTTACACATTAAGTG+TGG - tig0027301:3930-3949 None:intergenic 30.0%
AAATTTCACAAGTCGGATTA+GGG - tig0027301:4102-4121 None:intergenic 30.0%
! ACTTACAATTTGGTTTAGAG+AGG - tig0027301:4136-4155 None:intergenic 30.0%
CTAAACCAAATTGTAAGTTG+AGG + tig0027301:4138-4157 Msa1433380:intron 30.0%
GATCATATCACATTTAGTCT+AGG + tig0027301:4190-4209 Msa1433380:intron 30.0%
!!! GTTTCTGATTTTTTAACTCG+AGG + tig0027301:4232-4251 Msa1433380:intron 30.0%
TCAATAATTTCAGAACGTCT+TGG - tig0027301:4460-4479 None:intergenic 30.0%
! GAGGAAATTTTGAATCATTC+AGG - tig0027301:4700-4719 None:intergenic 30.0%
GAAGGGAAATATGTTAGAAT+GGG - tig0027301:4722-4741 None:intergenic 30.0%
TGAAGGGAAATATGTTAGAA+TGG - tig0027301:4723-4742 None:intergenic 30.0%
TCTAACATATTTCCCTTCAT+TGG + tig0027301:4724-4743 Msa1433380:three_prime_UTR 30.0%
TACATGTACAAACCAATGAA+GGG - tig0027301:4739-4758 None:intergenic 30.0%
ATACATGTACAAACCAATGA+AGG - tig0027301:4740-4759 None:intergenic 30.0%
AAAAGAAAGAAAAGTCCCGA+TGG + tig0027301:76-95 Msa1433380:five_prime_UTR 35.0%
!! AAAGTACACATTTTGGCCAA+TGG - tig0027301:130-149 None:intergenic 35.0%
!! CCACACAAAAGTACACATTT+TGG - tig0027301:137-156 None:intergenic 35.0%
! CCAAAATGTGTACTTTTGTG+TGG + tig0027301:134-153 Msa1433380:five_prime_UTR 35.0%
! TACTTTTGTGTGGTGATTAG+AGG + tig0027301:144-163 Msa1433380:five_prime_UTR 35.0%
TGGGATGAAAAGTAGTGAAA+GGG - tig0027301:213-232 None:intergenic 35.0%
AGAAGCTGAAGAAGATGATT+TGG - tig0027301:614-633 None:intergenic 35.0%
TGGACTCATTGAAGTTGTTA+TGG + tig0027301:786-805 Msa1433380:CDS 35.0%
GCGTAAATCATCATGGTTAA+TGG - tig0027301:872-891 None:intergenic 35.0%
! AGAGTAGAGTACCTTAGAAA+TGG - tig0027301:899-918 None:intergenic 35.0%
!!! GCCAAGTGACTTGTTTTATT+TGG + tig0027301:1003-1022 Msa1433380:intron 35.0%
CATGCATCATACGTAAAAGA+GGG - tig0027301:1145-1164 None:intergenic 35.0%
TGATAACATACGACGAGTTT+AGG - tig0027301:1238-1257 None:intergenic 35.0%
CACACTACAAAAACTCAGTT+TGG - tig0027301:1275-1294 None:intergenic 35.0%
ATGAGCTATCAATACCAGAT+CGG - tig0027301:1433-1452 None:intergenic 35.0%
TGCATCGTATAAGTGCAATT+CGG + tig0027301:1453-1472 Msa1433380:CDS 35.0%
AATCGTCAGATGCAAATCAT+TGG + tig0027301:1476-1495 Msa1433380:CDS 35.0%
AATCATACATGATCTGGTTG+AGG + tig0027301:1541-1560 Msa1433380:CDS 35.0%
!! GTTTTCTTTGAAAATGCCAC+TGG + tig0027301:1715-1734 Msa1433380:intron 35.0%
GTGGATACATCCAATGAAAT+TGG + tig0027301:1868-1887 Msa1433380:CDS 35.0%
GATACATCCAATGAAATTGG+AGG + tig0027301:1871-1890 Msa1433380:CDS 35.0%
CTATGCTGCATATTCACATT+TGG - tig0027301:1949-1968 None:intergenic 35.0%
! CAATCTTTGAAAGAAGGATG+GGG - tig0027301:2369-2388 None:intergenic 35.0%
CGCGCTATACATATTTCATT+AGG - tig0027301:2420-2439 None:intergenic 35.0%
TTGAATAGAGTGTAACTCTC+GGG + tig0027301:2473-2492 Msa1433380:intron 35.0%
! ATGAACACGACATTCAGTTT+TGG - tig0027301:2587-2606 None:intergenic 35.0%
TCATAGGTTAGATTCAACTG+TGG + tig0027301:2606-2625 Msa1433380:CDS 35.0%
!! TTCAACTGTGGATGCTATTT+TGG + tig0027301:2618-2637 Msa1433380:CDS 35.0%
! AGTATTTGAAGTCCGTCATT+GGG + tig0027301:2765-2784 Msa1433380:CDS 35.0%
TGGAAAAATCATCCCAATGA+CGG - tig0027301:2780-2799 None:intergenic 35.0%
! TCATGGCTTATTTCAGGTAT+TGG - tig0027301:2823-2842 None:intergenic 35.0%
GTTTCTTCATGGCTTATTTC+AGG - tig0027301:2829-2848 None:intergenic 35.0%
TGCTGGTAGAGAATATTATC+AGG + tig0027301:3030-3049 Msa1433380:intron 35.0%
TGAGAACAAATACAGGTAAC+TGG - tig0027301:3326-3345 None:intergenic 35.0%
GTTACCTGTATTTGTTCTCA+AGG + tig0027301:3326-3345 Msa1433380:CDS 35.0%
AAGAGGTAGCAATAGCAAAA+GGG - tig0027301:3354-3373 None:intergenic 35.0%
AAAGAGGTAGCAATAGCAAA+AGG - tig0027301:3355-3374 None:intergenic 35.0%
!! TACCATTTTTGCCATGGTAT+TGG - tig0027301:3441-3460 None:intergenic 35.0%
TACCATGGCAAAAATGGTAA+AGG + tig0027301:3442-3461 Msa1433380:CDS 35.0%
AAGGCAGTAAAAATGATCCT+CGG + tig0027301:3461-3480 Msa1433380:CDS 35.0%
! ATTTGATGGCTTCTTTATCG+TGG - tig0027301:3504-3523 None:intergenic 35.0%
ATATCTGGAGACTCATTTGA+TGG - tig0027301:3518-3537 None:intergenic 35.0%
CTTCAAGTGCTTAGTTGTTT+GGG + tig0027301:3706-3725 Msa1433380:intron 35.0%
CACAAATGAGCATACACAAA+AGG - tig0027301:3782-3801 None:intergenic 35.0%
CACTAGCAGTTCTTAGATTT+GGG + tig0027301:3826-3845 Msa1433380:intron 35.0%
GCTCTATAATGTCAAGTCTT+AGG - tig0027301:3969-3988 None:intergenic 35.0%
GTCCAAAAAATAGGTCACTT+GGG - tig0027301:3996-4015 None:intergenic 35.0%
TGTCCAAAAAATAGGTCACT+TGG - tig0027301:3997-4016 None:intergenic 35.0%
AAGTCTGTAAAGGATCTGTT+GGG - tig0027301:4051-4070 None:intergenic 35.0%
AAAGTCTGTAAAGGATCTGT+TGG - tig0027301:4052-4071 None:intergenic 35.0%
CAAATTTCACAAGTCGGATT+AGG - tig0027301:4103-4122 None:intergenic 35.0%
! ACAATTTGGTTTAGAGAGGT+TGG - tig0027301:4132-4151 None:intergenic 35.0%
ACATCCCTCAACTTACAATT+TGG - tig0027301:4146-4165 None:intergenic 35.0%
!!! TTAACTCGAGGGCTATTTTT+CGG + tig0027301:4244-4263 Msa1433380:intron 35.0%
TTATTGTATTCGTATACGGC+AGG + tig0027301:4375-4394 Msa1433380:intron 35.0%
ATAGAGTACATAGTGATTCC+TGG + tig0027301:4412-4431 Msa1433380:CDS 35.0%
!! GACGTTCTGAAATTATTGAC+CGG + tig0027301:4461-4480 Msa1433380:CDS 35.0%
GAAACAGAACTAAACTTGGA+GGG - tig0027301:4589-4608 None:intergenic 35.0%
TTTACCTCAGAAAAATCTGC+TGG + tig0027301:4625-4644 Msa1433380:CDS 35.0%
AAGAAAAGTCCCGATGGTAT+AGG + tig0027301:82-101 Msa1433380:five_prime_UTR 40.0%
GAAAAGTAGTGAAAGGGGTT+TGG - tig0027301:207-226 None:intergenic 40.0%
GGGATGAAAAGTAGTGAAAG+GGG - tig0027301:212-231 None:intergenic 40.0%
GTGGGATGAAAAGTAGTGAA+AGG - tig0027301:214-233 None:intergenic 40.0%
GAAGCAACAAACATGAGAGT+GGG - tig0027301:232-251 None:intergenic 40.0%
AGAGAAGAGGGAAGATTCTT+TGG - tig0027301:292-311 None:intergenic 40.0%
GAAGTCTTCTTGATGAACGA+TGG - tig0027301:573-592 None:intergenic 40.0%
GATCGTTACCCAATCAGAAA+TGG + tig0027301:655-674 Msa1433380:CDS 40.0%
GTGAGGATCCATTTCTGATT+GGG - tig0027301:666-685 None:intergenic 40.0%
!! GTTTCTGGAACTTCTTCCTT+TGG + tig0027301:726-745 Msa1433380:CDS 40.0%
! AACTTCTTCCTTTGGAGATG+AGG + tig0027301:734-753 Msa1433380:CDS 40.0%
AATTCCATCCTCATCTCCAA+AGG - tig0027301:745-764 None:intergenic 40.0%
TAGATTCCCTTCTGGTGATT+GGG + tig0027301:831-850 Msa1433380:CDS 40.0%
AAATGACCCAATCACCAGAA+GGG - tig0027301:840-859 None:intergenic 40.0%
! CTCTACTCTACCTCTGTTTT+TGG + tig0027301:910-929 Msa1433380:intron 40.0%
CCATGCATCATACGTAAAAG+AGG - tig0027301:1146-1165 None:intergenic 40.0%
! CCTCTTTTACGTATGATGCA+TGG + tig0027301:1143-1162 Msa1433380:intron 40.0%
AGTTAGCTAGTAGCAGATAG+TGG - tig0027301:1211-1230 None:intergenic 40.0%
ATACATGATCTGGTTGAGGA+AGG + tig0027301:1545-1564 Msa1433380:CDS 40.0%
TGAGGAAGGAGGTTCTATAT+TGG + tig0027301:1559-1578 Msa1433380:CDS 40.0%
GGAGGTTCTATATTGGTCAT+TGG + tig0027301:1566-1585 Msa1433380:CDS 40.0%
!! AAGGTAGTTTTACCAACACC+AGG - tig0027301:1596-1615 None:intergenic 40.0%
ACTATGTCTGTATGTGGAAC+TGG + tig0027301:1646-1665 Msa1433380:intron 40.0%
TCCAATGAAATTGGAGGTGA+CGG + tig0027301:1877-1896 Msa1433380:CDS 40.0%
TTGAACTCCTCTTTGAGCAA+TGG - tig0027301:2180-2199 None:intergenic 40.0%
TGCTCAAAGAGGAGTTCAAT+TGG + tig0027301:2181-2200 Msa1433380:CDS 40.0%
CAAAGAGGAGTTCAATTGGT+TGG + tig0027301:2185-2204 Msa1433380:CDS 40.0%
CCAACAAGGATCTGAAGATA+AGG - tig0027301:2251-2270 None:intergenic 40.0%
CCTTATCTTCAGATCCTTGT+TGG + tig0027301:2248-2267 Msa1433380:CDS 40.0%
TATCTTCAGATCCTTGTTGG+TGG + tig0027301:2251-2270 Msa1433380:CDS 40.0%
TGAATAGAGTGTAACTCTCG+GGG + tig0027301:2474-2493 Msa1433380:intron 40.0%
! CTTTTGCACTTTCCTTTTCC+TGG - tig0027301:2509-2528 None:intergenic 40.0%
TCAACAGCACACGTAAATGT+AGG - tig0027301:2556-2575 None:intergenic 40.0%
CTGAATGTCGTGTTCATCAT+AGG + tig0027301:2590-2609 Msa1433380:CDS 40.0%
!! CAATGACGGACTTCAAATAC+TGG - tig0027301:2766-2785 None:intergenic 40.0%
! CAGTATTTGAAGTCCGTCAT+TGG + tig0027301:2764-2783 Msa1433380:CDS 40.0%
AGCATGCTTCACCAAATCAT+TGG - tig0027301:2800-2819 None:intergenic 40.0%
!! ATAGTGGATCTGTGATCAAG+AGG + tig0027301:2953-2972 Msa1433380:CDS 40.0%
!!! ATTTTTGGGTTTGCATGTGC+TGG + tig0027301:3013-3032 Msa1433380:intron 40.0%
AGTACGAGTAGCAAAAGTGA+TGG + tig0027301:3188-3207 Msa1433380:CDS 40.0%
GTACGAGTAGCAAAAGTGAT+GGG + tig0027301:3189-3208 Msa1433380:CDS 40.0%
TACGAGTAGCAAAAGTGATG+GGG + tig0027301:3190-3209 Msa1433380:CDS 40.0%
ATTCTGTCGTAACTCAGAAC+CGG - tig0027301:3274-3293 None:intergenic 40.0%
CTGAGTTACGACAGAATTCA+TGG + tig0027301:3277-3296 Msa1433380:CDS 40.0%
GAACAAATACAGGTAACTGG+TGG - tig0027301:3323-3342 None:intergenic 40.0%
! ATGGTATTGGACTGCAATGA+AGG - tig0027301:3428-3447 None:intergenic 40.0%
TTCATTGCAGTCCAATACCA+TGG + tig0027301:3427-3446 Msa1433380:intron 40.0%
GTCCAATACCATGGCAAAAA+TGG + tig0027301:3436-3455 Msa1433380:intron 40.0%
!! TGCCTTTACCATTTTTGCCA+TGG - tig0027301:3447-3466 None:intergenic 40.0%
AGGCAGTAAAAATGATCCTC+GGG + tig0027301:3462-3481 Msa1433380:CDS 40.0%
TTCTTTATCGTGGAGCCAAA+GGG - tig0027301:3494-3513 None:intergenic 40.0%
CTAATTGAGTGGGCAGAAAA+GGG - tig0027301:3608-3627 None:intergenic 40.0%
ACTAATTGAGTGGGCAGAAA+AGG - tig0027301:3609-3628 None:intergenic 40.0%
GCTTCAAGTGCTTAGTTGTT+TGG + tig0027301:3705-3724 Msa1433380:intron 40.0%
CCAAATCTAAGAACTGCTAG+TGG - tig0027301:3828-3847 None:intergenic 40.0%
CCACTAGCAGTTCTTAGATT+TGG + tig0027301:3825-3844 Msa1433380:intron 40.0%
!!! GACCCAAGTGACCTATTTTT+TGG + tig0027301:3991-4010 Msa1433380:intron 40.0%
GTGGTCTGTGTCCAAAAAAT+AGG - tig0027301:4005-4024 None:intergenic 40.0%
TCAAGTGGTCTGATATCACA+TGG + tig0027301:4025-4044 Msa1433380:intron 40.0%
TTTGCACAAGTTCAATCTGC+CGG - tig0027301:4483-4502 None:intergenic 40.0%
ACTTGTGCAAAGCTATCAGT+TGG + tig0027301:4492-4511 Msa1433380:CDS 40.0%
! CTTTTGGTACTTAGCCTCAA+GGG - tig0027301:4565-4584 None:intergenic 40.0%
! TCTTTTGGTACTTAGCCTCA+AGG - tig0027301:4566-4585 None:intergenic 40.0%
! ACTAAACTTGGAGGGTCTTT+TGG - tig0027301:4581-4600 None:intergenic 40.0%
GGAAACAGAACTAAACTTGG+AGG - tig0027301:4590-4609 None:intergenic 40.0%
GCAGGAAACAGAACTAAACT+TGG - tig0027301:4593-4612 None:intergenic 40.0%
! GGTAAAACTTCTTTTCGTGC+AGG - tig0027301:4611-4630 None:intergenic 40.0%
! ACTACCAGCAGATTTTTCTG+AGG - tig0027301:4632-4651 None:intergenic 40.0%
TCAGAAAAATCTGCTGGTAG+TGG + tig0027301:4631-4650 Msa1433380:CDS 40.0%
GGGAAATATGTTAGAATGGG+AGG - tig0027301:4719-4738 None:intergenic 40.0%
AACATGTACAGTCGTGTATG+TGG + tig0027301:4769-4788 Msa1433380:three_prime_UTR 40.0%
! TTTGCGTGACGGAAAACCAT+TGG + tig0027301:111-130 Msa1433380:five_prime_UTR 45.0%
! AGTAGTGAAAGGGGTTTGGT+TGG - tig0027301:203-222 None:intergenic 45.0%
GGAAGCAACAAACATGAGAG+TGG - tig0027301:233-252 None:intergenic 45.0%
TTGATCTTCACTGCACCTCA+TGG + tig0027301:503-522 Msa1433380:CDS 45.0%
! GTTGTTGTTCCTTTGCCATG+AGG - tig0027301:521-540 None:intergenic 45.0%
CTGATTGGGTAACGATCAGA+GGG - tig0027301:652-671 None:intergenic 45.0%
TCTGATTGGGTAACGATCAG+AGG - tig0027301:653-672 None:intergenic 45.0%
GGTGAGGATCCATTTCTGAT+TGG - tig0027301:667-686 None:intergenic 45.0%
!! GTTTCGGGTTGTGAATTCGA+CGG - tig0027301:688-707 None:intergenic 45.0%
AAACATATCAAGCTCCGCTG+TGG - tig0027301:710-729 None:intergenic 45.0%
AGCGGAGCTTGATATGTTTC+TGG + tig0027301:711-730 Msa1433380:CDS 45.0%
! TCTTCCTTTGGAGATGAGGA+TGG + tig0027301:738-757 Msa1433380:CDS 45.0%
TTGTATCGCCACCAAGAGAT+TGG + tig0027301:763-782 Msa1433380:CDS 45.0%
CAATGAGTCCACCAATCTCT+TGG - tig0027301:777-796 None:intergenic 45.0%
CTAGATTCCCTTCTGGTGAT+TGG + tig0027301:830-849 Msa1433380:CDS 45.0%
GAAATGACCCAATCACCAGA+AGG - tig0027301:841-860 None:intergenic 45.0%
TTTACGCCACGCCATTTCTA+AGG + tig0027301:885-904 Msa1433380:CDS 45.0%
! AGAGTACCTTAGAAATGGCG+TGG - tig0027301:894-913 None:intergenic 45.0%
! TTTTCGGATGACAACCGATC+TGG + tig0027301:1416-1435 Msa1433380:CDS 45.0%
ATATTGGTCATTGGACCTCC+TGG + tig0027301:1575-1594 Msa1433380:CDS 45.0%
!! GTAGTTTTACCAACACCAGG+AGG - tig0027301:1593-1612 None:intergenic 45.0%
CAGAAACAAACACAGTCCAG+TGG - tig0027301:1734-1753 None:intergenic 45.0%
TCCGTCACCTCCAATTTCAT+TGG - tig0027301:1881-1900 None:intergenic 45.0%
GCAAGTACCATTGCTCAAAG+AGG + tig0027301:2170-2189 Msa1433380:CDS 45.0%
CAATTGGTTGGAACAGCACA+TGG + tig0027301:2197-2216 Msa1433380:CDS 45.0%
!! GATCCTTGTTGGTGGTATAG+AGG + tig0027301:2259-2278 Msa1433380:CDS 45.0%
ACAGCACACGTAAATGTAGG+TGG - tig0027301:2553-2572 None:intergenic 45.0%
!!! ACTGTGGATGCTATTTTGGC+AGG + tig0027301:2622-2641 Msa1433380:CDS 45.0%
!! TGACGGACTTCAAATACTGG+AGG - tig0027301:2763-2782 None:intergenic 45.0%
! TTCTGACAGAGAGTATGACG+AGG + tig0027301:2885-2904 Msa1433380:CDS 45.0%
ATCCCACTCGATCCATGAAA+TGG + tig0027301:2923-2942 Msa1433380:CDS 45.0%
CTCCATTTCATGGATCGAGT+GGG - tig0027301:2928-2947 None:intergenic 45.0%
ACTCCATTTCATGGATCGAG+TGG - tig0027301:2929-2948 None:intergenic 45.0%
TTGCAGGTGTACACTTGCAT+TGG - tig0027301:2985-3004 None:intergenic 45.0%
AATGCAAGTGTACACCTGCA+AGG + tig0027301:2984-3003 Msa1433380:CDS 45.0%
!! AACGGGCACTGTTTTCTTGT+TGG + tig0027301:3138-3157 Msa1433380:intron 45.0%
GCTGATGCAATTCTTGCATC+CGG + tig0027301:3252-3271 Msa1433380:CDS 45.0%
GGCACCTTGAGAACAAATAC+AGG - tig0027301:3333-3352 None:intergenic 45.0%
CTTCTTTATCGTGGAGCCAA+AGG - tig0027301:3495-3514 None:intergenic 45.0%
AGAAAAGGGTTGTACCTCCA+AGG - tig0027301:3594-3613 None:intergenic 45.0%
GTGATATCAGACCACTTGAG+TGG - tig0027301:4024-4043 None:intergenic 45.0%
! TTTCACAAGTCGGATTAGGG+AGG - tig0027301:4099-4118 None:intergenic 45.0%
TTGTATTCGTATACGGCAGG+AGG + tig0027301:4378-4397 Msa1433380:intron 45.0%
GAGTACATAGTGATTCCTGG+TGG + tig0027301:4415-4434 Msa1433380:CDS 45.0%
!! GAAAAATCTGCTGGTAGTGG+TGG + tig0027301:4634-4653 Msa1433380:CDS 45.0%
AATAGGAAGCCTAGTGACAG+TGG - tig0027301:4674-4693 None:intergenic 45.0%
!!! TGTTTTTATTTTATTTTTAT+TGG - tig0027301:49-68 None:intergenic 5.0%
TTCACTGCACCTCATGGCAA+AGG + tig0027301:509-528 Msa1433380:CDS 50.0%
TCAGAGGGTCTTCGGATTTG+AGG - tig0027301:637-656 None:intergenic 50.0%
GGTAACGATCAGAGGGTCTT+CGG - tig0027301:645-664 None:intergenic 50.0%
TTCACAACCCGAAACCACAG+CGG + tig0027301:693-712 Msa1433380:CDS 50.0%
ATCAAGCTCCGCTGTGGTTT+CGG - tig0027301:704-723 None:intergenic 50.0%
TATCGCCACCAAGAGATTGG+TGG + tig0027301:766-785 Msa1433380:CDS 50.0%
TGAGTCCACCAATCTCTTGG+TGG - tig0027301:774-793 None:intergenic 50.0%
CCAGAAGGGAATCTAGCAAG+AGG - tig0027301:826-845 None:intergenic 50.0%
CCTCTTGCTAGATTCCCTTC+TGG + tig0027301:823-842 Msa1433380:CDS 50.0%
TGGCGTGGCGTAAATCATCA+TGG - tig0027301:879-898 None:intergenic 50.0%
!! ATTGGCCTTACTTGCCGTGT+TGG + tig0027301:1494-1513 Msa1433380:CDS 50.0%
CATGATCTGGTTGAGGAAGG+AGG + tig0027301:1548-1567 Msa1433380:CDS 50.0%
GATTGTGCAGAGAGACTGCT+AGG + tig0027301:1809-1828 Msa1433380:intron 50.0%
CCACTATTACTACGCGCTTC+AGG - tig0027301:1852-1871 None:intergenic 50.0%
CCTGAAGCGCGTAGTAATAG+TGG + tig0027301:1849-1868 Msa1433380:CDS 50.0%
GATGTTCCTCATGCAGGCAT+AGG + tig0027301:1901-1920 Msa1433380:CDS 50.0%
GCACCTCTATACCACCAACA+AGG - tig0027301:2265-2284 None:intergenic 50.0%
! CTTTGAAAGAAGGATGGGGC+CGG - tig0027301:2365-2384 None:intergenic 50.0%
CGACAGAATTCATGGATCCG+TGG + tig0027301:3285-3304 Msa1433380:CDS 50.0%
GGTGGAATTTCGCAACACCA+CGG - tig0027301:3305-3324 None:intergenic 50.0%
TTGGACACAGACCACTCAAG+TGG + tig0027301:4010-4029 Msa1433380:intron 50.0%
TTCGTATACGGCAGGAGGTT+CGG + tig0027301:4383-4402 Msa1433380:intron 50.0%
CATAGTGATTCCTGGTGGAG+AGG + tig0027301:4420-4439 Msa1433380:CDS 50.0%
CAGTTGGCTGCTGAAAAGTC+AGG + tig0027301:4508-4527 Msa1433380:CDS 50.0%
GGCTGCTGAAAAGTCAGGTA+CGG + tig0027301:4513-4532 Msa1433380:CDS 50.0%
CAGGTACGGATCAAAACACC+AGG + tig0027301:4527-4546 Msa1433380:CDS 50.0%
CAAGGGAAGAATCTGCAACC+TGG - tig0027301:4548-4567 None:intergenic 50.0%
GGTTGCAGATTCTTCCCTTG+AGG + tig0027301:4548-4567 Msa1433380:CDS 50.0%
!! AAATCTGCTGGTAGTGGTGG+CGG + tig0027301:4637-4656 Msa1433380:CDS 50.0%
GCAATGGTACCACTGTCACT+AGG + tig0027301:4662-4681 Msa1433380:CDS 50.0%
GGGTTGTGAATTCGACGGTG+AGG - tig0027301:683-702 None:intergenic 55.0%
TCAAGCTCCGCTGTGGTTTC+GGG - tig0027301:703-722 None:intergenic 55.0%
CTCGACCAACACGGCAAGTA+AGG - tig0027301:1502-1521 None:intergenic 55.0%
! TACTTGCCGTGTTGGTCGAG+CGG + tig0027301:1502-1521 Msa1433380:CDS 55.0%
GTCATTGGACCTCCTGGTGT+TGG + tig0027301:1581-1600 Msa1433380:CDS 55.0%
CAGAGAGACTGCTAGGATGC+TGG + tig0027301:1816-1835 Msa1433380:intron 55.0%
GACGGAGATGTTCCTCATGC+AGG + tig0027301:1895-1914 Msa1433380:CDS 55.0%
TTCCTCATGCAGGCATAGGC+AGG + tig0027301:1905-1924 Msa1433380:CDS 55.0%
TCCTCATGCAGGCATAGGCA+GGG + tig0027301:1906-1925 Msa1433380:CDS 55.0%
AAAGAAGGATGGGGCCGGAA+TGG - tig0027301:2360-2379 None:intergenic 55.0%
GAGTGTAACTCTCGGGGATG+AGG + tig0027301:2480-2499 Msa1433380:intron 55.0%
GGGATGAGGAAGCCAGGAAA+AGG + tig0027301:2494-2513 Msa1433380:CDS 55.0%
! ATCCTCGGGCTAGAACCCTT+TGG + tig0027301:3476-3495 Msa1433380:CDS 55.0%
! TCCAGCGATGGTTTGCGCTT+CGG - tig0027301:3560-3579 None:intergenic 55.0%
GCGTCAATCTCTTCCAGCGA+TGG - tig0027301:3572-3591 None:intergenic 55.0%
GCTGGAAGAGATTGACGCCT+TGG + tig0027301:3574-3593 Msa1433380:CDS 55.0%
GGAAGAGATTGACGCCTTGG+AGG + tig0027301:3577-3596 Msa1433380:CDS 55.0%
CACTCACCGCTCGACCAACA+CGG - tig0027301:1511-1530 None:intergenic 60.0%
AAGGATGGGGCCGGAATGGA+TGG - tig0027301:2356-2375 None:intergenic 60.0%
! AGCCAAAGGGTTCTAGCCCG+AGG - tig0027301:3481-3500 None:intergenic 60.0%
ACCGAAGCGCAAACCATCGC+TGG + tig0027301:3556-3575 Msa1433380:CDS 60.0%
GATTCCTGGTGGAGAGGCTG+TGG + tig0027301:4426-4445 Msa1433380:CDS 60.0%
AGTTCCACAGCCTCTCCACC+AGG - tig0027301:4433-4452 None:intergenic 60.0%
! CGTGTTGGTCGAGCGGTGAG+TGG + tig0027301:1509-1528 Msa1433380:CDS 65.0%
GCCCTGCCTATGCCTGCATG+AGG - tig0027301:1910-1929 None:intergenic 65.0%
ATGCAGGCATAGGCAGGGCG+AGG + tig0027301:1911-1930 Msa1433380:CDS 65.0%
CTCTCGGGGATGAGGAAGCC+AGG + tig0027301:2488-2507 Msa1433380:CDS 65.0%
!! TCTGCTGGTAGTGGTGGCGG+CGG + tig0027301:4640-4659 Msa1433380:CDS 65.0%
CAGGCATAGGCAGGGCGAGG+AGG + tig0027301:1914-1933 Msa1433380:CDS 70.0%
!! GGTAGTGGTGGCGGCGGCAA+TGG + tig0027301:4646-4665 Msa1433380:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0027301 gene 1 4925 1 ID=Msa1433380;Name=Msa1433380
tig0027301 mRNA 1 4925 1 ID=Msa1433380-mRNA-1;Parent=Msa1433380;Name=Msa1433380-mRNA-1;_AED=0.06;_eAED=0.06;_QI=471|1|1|1|1|1|9|220|684
tig0027301 exon 1 906 1 ID=Msa1433380-mRNA-1:exon:8616;Parent=Msa1433380-mRNA-1
tig0027301 exon 1407 1621 1407 ID=Msa1433380-mRNA-1:exon:8617;Parent=Msa1433380-mRNA-1
tig0027301 exon 1819 1969 1819 ID=Msa1433380-mRNA-1:exon:8618;Parent=Msa1433380-mRNA-1
tig0027301 exon 2089 2280 2089 ID=Msa1433380-mRNA-1:exon:8619;Parent=Msa1433380-mRNA-1
tig0027301 exon 2481 2643 2481 ID=Msa1433380-mRNA-1:exon:8620;Parent=Msa1433380-mRNA-1
tig0027301 exon 2755 3005 2755 ID=Msa1433380-mRNA-1:exon:8621;Parent=Msa1433380-mRNA-1
tig0027301 exon 3171 3347 3171 ID=Msa1433380-mRNA-1:exon:8622;Parent=Msa1433380-mRNA-1
tig0027301 exon 3437 3598 3437 ID=Msa1433380-mRNA-1:exon:8623;Parent=Msa1433380-mRNA-1
tig0027301 exon 4397 4925 4397 ID=Msa1433380-mRNA-1:exon:8624;Parent=Msa1433380-mRNA-1
tig0027301 five_prime_UTR 1 471 1 ID=Msa1433380-mRNA-1:five_prime_utr;Parent=Msa1433380-mRNA-1
tig0027301 CDS 472 906 472 ID=Msa1433380-mRNA-1:cds;Parent=Msa1433380-mRNA-1
tig0027301 CDS 1407 1621 1407 ID=Msa1433380-mRNA-1:cds;Parent=Msa1433380-mRNA-1
tig0027301 CDS 1819 1969 1819 ID=Msa1433380-mRNA-1:cds;Parent=Msa1433380-mRNA-1
tig0027301 CDS 2089 2280 2089 ID=Msa1433380-mRNA-1:cds;Parent=Msa1433380-mRNA-1
tig0027301 CDS 2481 2643 2481 ID=Msa1433380-mRNA-1:cds;Parent=Msa1433380-mRNA-1
tig0027301 CDS 2755 3005 2755 ID=Msa1433380-mRNA-1:cds;Parent=Msa1433380-mRNA-1
tig0027301 CDS 3171 3347 3171 ID=Msa1433380-mRNA-1:cds;Parent=Msa1433380-mRNA-1
tig0027301 CDS 3437 3598 3437 ID=Msa1433380-mRNA-1:cds;Parent=Msa1433380-mRNA-1
tig0027301 CDS 4397 4705 4397 ID=Msa1433380-mRNA-1:cds;Parent=Msa1433380-mRNA-1
tig0027301 three_prime_UTR 4706 4925 4706 ID=Msa1433380-mRNA-1:three_prime_utr;Parent=Msa1433380-mRNA-1
Gene Sequence

>Msa1433380

ATGAGAGCAATAAATTCGCATGTTGTCTTAATTGATCTTCACTGCACCTCATGGCAAAGGAACAACAACCTTAACAACAATAAATTGTTTTCTTCATTCCATCGTTCATCAAGAAGACTTCATAAAGCGATTCAAGCTTCCAAATCATCTTCTTCAGCTTCTCCTCAAATCCGAAGACCCTCTGATCGTTACCCAATCAGAAATGGATCCTCACCGTCGAATTCACAACCCGAAACCACAGCGGAGCTTGATATGTTTCTGGAACTTCTTCCTTTGGAGATGAGGATGGAATTGTATCGCCACCAAGAGATTGGTGGACTCATTGAAGTTGTTATGGATTTAGGTAGAAAACCTCTTGCTAGATTCCCTTCTGGTGATTGGGTCATTTCTCAACGACCCATTAACCATGATGATTTACGCCACGCCATTTCTAAGGTTGGTGATTTTTCGGATGACAACCGATCTGGTATTGATAGCTCATTGCATCGTATAAGTGCAATTCGGAATCGTCAGATGCAAATCATTGGCCTTACTTGCCGTGTTGGTCGAGCGGTGAGTGGCAGTGCTAAAATCATACATGATCTGGTTGAGGAAGGAGGTTCTATATTGGTCATTGGACCTCCTGGTGTTGGTAAAACTACCTTAATCAGAGAGACTGCTAGGATGCTGGCAGATGAGTTCCTGAAGCGCGTAGTAATAGTGGATACATCCAATGAAATTGGAGGTGACGGAGATGTTCCTCATGCAGGCATAGGCAGGGCGAGGAGGATGCAAGTTCCAAATGTGAATATGCAGCATAGTATTATGATTGAAGCAGTTGAAAATCATATGCCTGAAACCATTATAATTGATGAAATTGGAACAGAACTTGAAGCATTAGCAGCAAGTACCATTGCTCAAAGAGGAGTTCAATTGGTTGGAACAGCACATGGAACAACCATTGAAAGCATAATGAAGAATCCTTATCTTCAGATCCTTGTTGGTGGTATAGAGAGTGTAACTCTCGGGGATGAGGAAGCCAGGAAAAGGAAAGTGCAAAAGACAATTCTAGAAAGGAAAGGACCACCTACATTTACGTGTGCTGTTGAGATGATATCCAAAACTGAATGTCGTGTTCATCATAGGTTAGATTCAACTGTGGATGCTATTTTGGCAGGAAAACCTCCAGTATTTGAAGTCCGTCATTGGGATGATTTTTCCAATGATTTGGTGAAGCATGCTCCAATACCTGAAATAAGCCATGAAGAAACATCGGATTTAAATTTAACTAACACTAATATCACAAGTTCTGACAGAGAGTATGACGAGGATGATACATACTACTATCCCACTCGATCCATGAAATGGAGTGATAATAGTGGATCTGTGATCAAGAGGAGTTCACCAATGCAAGTGTACACCTGCAAGATTCTTGAAGCTGATCTAGTACGAGTAGCAAAAGTGATGGGGTTTGAAGATTTAATAGAAGTAACTGATGACATTGGAACTGCTGATGCAATTCTTGCATCCGGTTCTGAGTTACGACAGAATTCATGGATCCGTGGTGTTGCGAAATTCCACCAGTTACCTGTATTTGTTCTCAAGTCCAATACCATGGCAAAAATGGTAAAGGCAGTAAAAATGATCCTCGGGCTAGAACCCTTTGGCTCCACGATAAAGAAGCCATCAAATGAGTCTCCAGATATTGAAATTGACGATGACGAACCGAAGCGCAAACCATCGCTGGAAGAGATTGACGCCTTGGAGGAGGTTCGGCTAGCGATAGAGTACATAGTGATTCCTGGTGGAGAGGCTGTGGAACTTCTTCCAAGACGTTCTGAAATTATTGACCGGCAGATTGAACTTGTGCAAAGCTATCAGTTGGCTGCTGAAAAGTCAGGTACGGATCAAAACACCAGGTTGCAGATTCTTCCCTTGAGGCTAAGTACCAAAAGACCCTCCAAGTTTAGTTCTGTTTCCTGCACGAAAAGAAGTTTTACCTCAGAAAAATCTGCTGGTAGTGGTGGCGGCGGCAATGGTACCACTGTCACTAGGCTTCCTATTTTACCTGAATGA

Protein sequence

>Msa1433380

MRAINSHVVLIDLHCTSWQRNNNLNNNKLFSSFHRSSRRLHKAIQASKSSSSASPQIRRPSDRYPIRNGSSPSNSQPETTAELDMFLELLPLEMRMELYRHQEIGGLIEVVMDLGRKPLARFPSGDWVISQRPINHDDLRHAISKVGDFSDDNRSGIDSSLHRISAIRNRQMQIIGLTCRVGRAVSGSAKIIHDLVEEGGSILVIGPPGVGKTTLIRETARMLADEFLKRVVIVDTSNEIGGDGDVPHAGIGRARRMQVPNVNMQHSIMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGTTIESIMKNPYLQILVGGIESVTLGDEEARKRKVQKTILERKGPPTFTCAVEMISKTECRVHHRLDSTVDAILAGKPPVFEVRHWDDFSNDLVKHAPIPEISHEETSDLNLTNTNITSSDREYDEDDTYYYPTRSMKWSDNSGSVIKRSSPMQVYTCKILEADLVRVAKVMGFEDLIEVTDDIGTADAILASGSELRQNSWIRGVAKFHQLPVFVLKSNTMAKMVKAVKMILGLEPFGSTIKKPSNESPDIEIDDDEPKRKPSLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIIDRQIELVQSYQLAAEKSGTDQNTRLQILPLRLSTKRPSKFSSVSCTKRSFTSEKSAGSGGGGNGTTVTRLPILPE*