AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1107950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107950 MtrunA17_Chr7g0241811 91.860 516 9 3 1 484 1 515 0.0 954
Msa1107950 MtrunA17_Chr4g0005971 71.602 493 106 4 15 481 25 509 0.0 702
Msa1107950 MtrunA17_Chr4g0005961 70.588 34 10 0 425 458 1 34 5.76e-13 63.9
Msa1107950 MtrunA17_Chr4g0047711 25.225 333 205 13 92 391 5 326 1.78e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107950 AT5G01220.1 73.474 426 90 1 80 482 84 509 0.0 650
Msa1107950 AT5G01220.2 75.595 336 59 1 80 392 84 419 0.0 516

Find 137 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCAAGATCCTATTAATT+TGG 0.186753 7_3:+50389675 None:intergenic
ACTTCCCTATTGAAATTATA+AGG 0.226774 7_3:-50386082 Msa1107950:three_prime_UTR
ATTACCCTTTCCAACTTCTT+TGG 0.232734 7_3:-50392332 Msa1107950:five_prime_UTR
AACACTTGGCTTCGTTGTTT+TGG 0.243869 7_3:-50386670 Msa1107950:CDS
GCTACCTCTGAAATTATTCT+TGG 0.256331 7_3:+50388896 None:intergenic
ATTTGGCTCCATAAAATTCT+TGG 0.263085 7_3:+50389692 None:intergenic
AATAGGGTCATGAAGGATTT+AGG 0.285334 7_3:+50386123 None:intergenic
TAATGCCTTATAATTTCAAT+AGG 0.320295 7_3:+50386077 None:intergenic
TATCAAATGCCTTCGAGAAA+TGG 0.321585 7_3:-50389963 Msa1107950:CDS
CTTGGAGTTGAAAAGAGTTT+AGG 0.324101 7_3:-50387723 Msa1107950:CDS
TTCTGCTTTATCCATGTTAG+TGG 0.324376 7_3:+50392038 None:intergenic
ACAATGCTGCCATCTGGTTC+TGG 0.350326 7_3:-50386401 Msa1107950:CDS
TTTGGCTCCATAAAATTCTT+GGG 0.352450 7_3:+50389693 None:intergenic
TTTCTACAAGAAATATTAAT+GGG 0.366516 7_3:+50392126 None:intergenic
CAGCTAACAAGATTCGTCTT+TGG 0.369310 7_3:-50387923 Msa1107950:CDS
TGATCTGCAGGAATAATATC+TGG 0.372207 7_3:+50386597 None:intergenic
ATGAAAGCAACTCGAGCTTC+AGG 0.388762 7_3:+50387541 None:intergenic
AATCTAAGGGATACAATAGA+AGG 0.389088 7_3:+50392177 None:intergenic
GCAGTATTCACAGGAATGTT+AGG 0.393518 7_3:-50386756 Msa1107950:CDS
TCAACTCTTTGTCGAACAAA+AGG 0.396746 7_3:+50386508 None:intergenic
TCTGGTTCTGGCGCAAGAAA+AGG 0.398886 7_3:-50386389 Msa1107950:CDS
ATCAAATGCCTTCGAGAAAT+GGG 0.406692 7_3:-50389962 Msa1107950:CDS
CAACTCTTTGTCGAACAAAA+GGG 0.406801 7_3:+50386509 None:intergenic
TGCATCATCACCAGGCATAA+TGG 0.407359 7_3:-50388849 Msa1107950:intron
ACGTTTACTGATCCATTGTA+AGG 0.414214 7_3:+50386350 None:intergenic
CTGAAAATGAGAGGAATTCA+AGG 0.418257 7_3:-50391960 Msa1107950:CDS
CACTGGTACATGGGTATGAT+AGG 0.419410 7_3:+50388669 None:intergenic
TGAACTATCAAGGGTTTCTC+AGG 0.420730 7_3:+50387756 None:intergenic
AAATACAAAATAGATAGAAT+AGG 0.422824 7_3:+50386106 None:intergenic
ATAGTTCATGTTGGACGGCT+TGG 0.424140 7_3:-50387741 Msa1107950:CDS
AATTCAGCTTTCCCCTCCCT+TGG 0.426635 7_3:-50388952 Msa1107950:intron
AAAAGCTGCACGTAATGAAA+TGG 0.426643 7_3:-50386472 Msa1107950:CDS
CTGGTGCCATCTGTTGCCAT+TGG 0.430492 7_3:-50388113 Msa1107950:CDS
TCAGAACGTACCGCTCTCTT+TGG 0.431253 7_3:-50388927 Msa1107950:CDS
GAGAAAGAATCCAAAGAAGT+TGG 0.432970 7_3:+50392322 None:intergenic
ATGCAGCTTATAATGTGATA+TGG 0.434213 7_3:-50386192 Msa1107950:three_prime_UTR
GCAGATCAAGAAGGTAAAAC+AGG 0.441468 7_3:-50386582 Msa1107950:CDS
ATTTGATAAAGTTCTGAAAC+CGG 0.451845 7_3:+50389978 None:intergenic
GTATGATAGGACATGACAAT+TGG 0.454132 7_3:+50388682 None:intergenic
GAGCCAAATTAATAGGATCT+TGG 0.454953 7_3:-50389678 Msa1107950:CDS
ACGAAATGCGATTAAGACTA+AGG 0.456016 7_3:-50387854 Msa1107950:intron
CTGAAACTTACACTGGTACA+TGG 0.458251 7_3:+50388659 None:intergenic
TGGTGCCATCTGTTGCCATT+GGG 0.458535 7_3:-50388112 Msa1107950:CDS
AACAATACAATGCTGCCATC+TGG 0.461214 7_3:-50386407 Msa1107950:CDS
AATGCCTTATAATTTCAATA+GGG 0.461914 7_3:+50386078 None:intergenic
GCATTCATATTCATAAGAAT+CGG 0.463748 7_3:+50392240 None:intergenic
ACAGGTTATCTCTATAATCC+AGG 0.464651 7_3:-50386564 Msa1107950:CDS
AATACAAAATAGATAGAATA+GGG 0.465133 7_3:+50386107 None:intergenic
CCGGCGCGTGCTGCCACCAC+AGG 0.469518 7_3:+50386627 None:intergenic
CCGTCCAACATGAACTATCA+AGG 0.479820 7_3:+50387746 None:intergenic
AGGAACAATCGTACTAAGCT+TGG 0.480255 7_3:+50386280 None:intergenic
TAGTACGATTGTTCCTTGCT+TGG 0.480378 7_3:-50386273 Msa1107950:three_prime_UTR
CGAGTTGCTTTCATCGGAGA+TGG 0.480961 7_3:-50387532 Msa1107950:CDS
CAACAGATGGCACCAGAGTC+AGG 0.483672 7_3:+50388120 None:intergenic
CTATAGTTAACTTGTGGTGA+TGG 0.484123 7_3:+50386321 None:intergenic
CTGGTTCTGGCGCAAGAAAA+GGG 0.485575 7_3:-50386388 Msa1107950:CDS
AAGCAGTCTTCAAGATCCCC+TGG 0.497573 7_3:+50386546 None:intergenic
AACATTCCTGTGAATACTGC+AGG 0.502201 7_3:+50386759 None:intergenic
TGAAGAAGAAGATAAGGAAG+AGG 0.507796 7_3:-50392001 Msa1107950:CDS
TCATGATGAAGAAGAAGATA+AGG 0.508883 7_3:-50392007 Msa1107950:CDS
CATTCATATTCATAAGAATC+GGG 0.512930 7_3:+50392241 None:intergenic
GAGCTAGAGAAAATGTTTGA+AGG 0.513757 7_3:-50386786 Msa1107950:CDS
CCTTCAGAGTCAGAAACACT+TGG 0.519010 7_3:-50386684 Msa1107950:CDS
AATAATATCTGGAATGCCTC+CGG 0.525217 7_3:+50386608 None:intergenic
CCAAATTAATAGGATCTTGG+AGG 0.528912 7_3:-50389675 Msa1107950:intron
GAAAGGGTAATGTGAGTGAA+TGG 0.529042 7_3:+50392344 None:intergenic
ATGGTTGTGACAACGCATAA+AGG 0.529882 7_3:-50389721 Msa1107950:CDS
GATGATGCATGTATTATGTC+AGG 0.531330 7_3:+50388863 None:intergenic
TAGATAGAATAGGGTCATGA+AGG 0.531571 7_3:+50386116 None:intergenic
GGAACAATCGTACTAAGCTT+GGG 0.531998 7_3:+50386281 None:intergenic
TGCAGACCAACCATTATGCC+TGG 0.532076 7_3:+50388839 None:intergenic
CCTTGATAGTTCATGTTGGA+CGG 0.532119 7_3:-50387746 Msa1107950:CDS
CTCTCTCAAGCATATGCTAG+TGG 0.533783 7_3:-50386723 Msa1107950:CDS
CAGAGCAGCTGACCTGACTC+TGG 0.538024 7_3:-50388132 Msa1107950:CDS
GAAGAAGAAGATAAGGAAGA+GGG 0.541074 7_3:-50392000 Msa1107950:CDS
CGTGTGAACGGAATCGTGGA+TGG 0.542069 7_3:+50387874 None:intergenic
CAGGTTATCTCTATAATCCA+GGG 0.542485 7_3:-50386563 Msa1107950:CDS
AGCGGTACGTTCTGATACCA+AGG 0.543963 7_3:+50388935 None:intergenic
TGCCATCTGTTGCCATTGGG+AGG 0.550215 7_3:-50388109 Msa1107950:CDS
CACAGGTATCCCCGAAGACA+TGG 0.550551 7_3:+50386644 None:intergenic
TATAGTTAACTTGTGGTGAT+GGG 0.550671 7_3:+50386322 None:intergenic
GAATAATTTCAGAGGTAGCT+CGG 0.552361 7_3:-50388892 Msa1107950:CDS
GTGGTGGCAGCACGCGCCGG+AGG 0.554010 7_3:-50386624 Msa1107950:CDS
AGAATCCAAAGAAGTTGGAA+AGG 0.556799 7_3:+50392327 None:intergenic
AACTCTTTGTCGAACAAAAG+GGG 0.558837 7_3:+50386510 None:intergenic
TCATCGGAGATGGACCGTAC+AGG 0.559868 7_3:-50387522 Msa1107950:intron
GAATCCAAAGAAGTTGGAAA+GGG 0.562269 7_3:+50392328 None:intergenic
TGAAACTTACACTGGTACAT+GGG 0.562739 7_3:+50388660 None:intergenic
TTGGCTCCATAAAATTCTTG+GGG 0.568506 7_3:+50389694 None:intergenic
CCTGTGGTGGCAGCACGCGC+CGG 0.571301 7_3:-50386627 Msa1107950:CDS
GAAGCTCGAGTTGCTTTCAT+CGG 0.571976 7_3:-50387538 Msa1107950:CDS
AGAAGGGTATGATGATGAAG+TGG 0.577234 7_3:+50392194 None:intergenic
TTCATTTCGAACCTTTCGTG+TGG 0.577756 7_3:+50386428 None:intergenic
CCAAGTGTTTCTGACTCTGA+AGG 0.579198 7_3:+50386684 None:intergenic
AAGATTCGTCTTTGGAACAA+AGG 0.579970 7_3:-50387915 Msa1107950:CDS
TGTGCTTGAAGCCACTAACA+TGG 0.581699 7_3:-50392049 Msa1107950:CDS
TATTATTGAGACCCTTACAA+TGG 0.581845 7_3:-50386362 Msa1107950:CDS
GGTATGCCTGCAGTATTCAC+AGG 0.583017 7_3:-50386765 Msa1107950:CDS
GCCATCTGTTGCCATTGGGA+GGG 0.585852 7_3:-50388108 Msa1107950:CDS
CTTCTTCTACTGAAAATGAG+AGG 0.590922 7_3:-50391969 Msa1107950:CDS
CATCATCTATAGTTAACTTG+TGG 0.591830 7_3:+50386315 None:intergenic
GTATTCACAGGAATGTTAGG+AGG 0.591955 7_3:-50386753 Msa1107950:CDS
AGGACTCACGCAAATGGAGA+AGG 0.595520 7_3:+50391910 None:intergenic
ATTATTCCTGCAGATCAAGA+AGG 0.599930 7_3:-50386591 Msa1107950:CDS
TCCCTCCCAATGGCAACAGA+TGG 0.600891 7_3:+50388107 None:intergenic
TACGTTCTGATACCAAGGGA+GGG 0.601576 7_3:+50388940 None:intergenic
CGTCCAACATGAACTATCAA+GGG 0.605699 7_3:+50387747 None:intergenic
CGTTTACTGATCCATTGTAA+GGG 0.609300 7_3:+50386351 None:intergenic
ATCTAAGGGATACAATAGAA+GGG 0.609792 7_3:+50392178 None:intergenic
CAAGCGGCTAGAGTAACAGC+AGG 0.610811 7_3:-50388080 Msa1107950:intron
CGCTTGAAGATCCCTCCCAA+TGG 0.611728 7_3:+50388097 None:intergenic
TATTCACAGGAATGTTAGGA+GGG 0.613060 7_3:-50386752 Msa1107950:CDS
CCTCATCTCCCATTTCTCGA+AGG 0.616997 7_3:+50389954 None:intergenic
TTAATCGCATTTCGTGTGAA+CGG 0.618791 7_3:+50387862 None:intergenic
AAACCCTTGATAGTTCATGT+TGG 0.620136 7_3:-50387750 Msa1107950:CDS
ATTTCGTGTGAACGGAATCG+TGG 0.620865 7_3:+50387870 None:intergenic
ACGTTCTGATACCAAGGGAG+GGG 0.624386 7_3:+50388941 None:intergenic
TTGGAAGGCAGCCACACGAA+AGG 0.624568 7_3:-50386439 Msa1107950:CDS
GTCATAATAAGTCACCTGTA+CGG 0.625754 7_3:+50387508 None:intergenic
AAAGAGTTGAGAGAAACCAT+AGG 0.627134 7_3:-50386495 Msa1107950:CDS
CCTTCGAGAAATGGGAGATG+AGG 0.627264 7_3:-50389954 Msa1107950:intron
CATGTCTTCGGGGATACCTG+TGG 0.630437 7_3:-50386643 Msa1107950:CDS
TTTCTTGCGCCAGAACCAGA+TGG 0.633203 7_3:+50386392 None:intergenic
GGTATGATGATGAAGTGGAA+AGG 0.636351 7_3:+50392199 None:intergenic
ATATTTCTTGTAGAAAACCA+CGG 0.638873 7_3:-50392119 Msa1107950:CDS
GTGTTAAATCAAACCAAGCA+AGG 0.641545 7_3:+50386260 None:intergenic
CATTGGGAGGGATCTTCAAG+CGG 0.642986 7_3:-50388096 Msa1107950:CDS
TAGTCCAAGAATAATTTCAG+AGG 0.645622 7_3:-50388900 Msa1107950:CDS
ATAATACATGCATCATCACC+AGG 0.646793 7_3:-50388857 Msa1107950:CDS
ATTCACAGGAATGTTAGGAG+GGG 0.648550 7_3:-50386751 Msa1107950:CDS
GTCTTCGGGGATACCTGTGG+TGG 0.652844 7_3:-50386640 Msa1107950:CDS
GGACTAAGTGCCAAAGAGAG+CGG 0.657922 7_3:+50388917 None:intergenic
GTACGTTCTGATACCAAGGG+AGG 0.667883 7_3:+50388939 None:intergenic
GCGGTACGTTCTGATACCAA+GGG 0.688280 7_3:+50388936 None:intergenic
AGGTTATCTCTATAATCCAG+GGG 0.701223 7_3:-50386562 Msa1107950:CDS
GCTTGAAAAGAGCACAACCG+TGG 0.703799 7_3:+50392102 None:intergenic
ACAAAGAGAGCAATTCGACG+AGG 0.751848 7_3:+50391937 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTACAAGAAATATTAAT+GGG + chr7_3:50386298-50386317 None:intergenic 15.0%
!!! TTTTCTACAAGAAATATTAA+TGG + chr7_3:50386299-50386318 None:intergenic 15.0%
!!! TTCTTTAATTTGAATTGTAT+TGG - chr7_3:50386567-50386586 Msa1107950:CDS 15.0%
!!! GATAAAGGAATTTTTTTTAT+CGG - chr7_3:50387047-50387066 Msa1107950:intron 15.0%
!!! ATTTTTCTGTTAAAAGTTTT+AGG - chr7_3:50387537-50387556 Msa1107950:CDS 15.0%
!!! TTTTTTGTTTTCTATGTTAA+AGG - chr7_3:50387564-50387583 Msa1107950:intron 15.0%
!!! GTTGATTTTCATTTAATTTT+AGG - chr7_3:50388530-50388549 Msa1107950:intron 15.0%
!!! AGATTTTCATTGAATATTTT+GGG + chr7_3:50388572-50388591 None:intergenic 15.0%
!! AATCATAAAATCATGATAAT+AGG + chr7_3:50389028-50389047 None:intergenic 15.0%
!!! AAAAGTATTAGTGTAAAATA+TGG + chr7_3:50389427-50389446 None:intergenic 15.0%
!! CAAAATAATATATCTTTCAT+AGG - chr7_3:50390789-50390808 Msa1107950:intron 15.0%
!! AATACAAAATAGATAGAATA+GGG + chr7_3:50392317-50392336 None:intergenic 15.0%
!! AAATACAAAATAGATAGAAT+AGG + chr7_3:50392318-50392337 None:intergenic 15.0%
!! AAAAAAAACAGCACAAAAAT+AGG + chr7_3:50386534-50386553 None:intergenic 20.0%
!!! TAATGAGTTGGATATAAATA+TGG - chr7_3:50387348-50387367 Msa1107950:intron 20.0%
!! TATGTTAAAGGTTTGATATT+TGG - chr7_3:50387576-50387595 Msa1107950:intron 20.0%
!! TATCATATCATATACGTATT+CGG + chr7_3:50387744-50387763 None:intergenic 20.0%
!!! AAATTTCTCATATTTCTATG+CGG + chr7_3:50387768-50387787 None:intergenic 20.0%
!!! CAGATTTTCATTGAATATTT+TGG + chr7_3:50388573-50388592 None:intergenic 20.0%
!! CAAAATATTCAATGAAAATC+TGG - chr7_3:50388571-50388590 Msa1107950:intron 20.0%
!! TATGTTTATTTGTCTCTTAT+AGG - chr7_3:50388675-50388694 Msa1107950:CDS 20.0%
!! CTAAATCCATTAAGATAATA+GGG + chr7_3:50389192-50389211 None:intergenic 20.0%
!! ACTAAATCCATTAAGATAAT+AGG + chr7_3:50389193-50389212 None:intergenic 20.0%
!! TAAGATTAAAAATAAGCTGT+TGG + chr7_3:50390110-50390129 None:intergenic 20.0%
!! GTTTAAATATAAGCATTTCT+CGG - chr7_3:50390418-50390437 Msa1107950:intron 20.0%
!! AATAACGAAAAAATGACAAA+AGG + chr7_3:50390599-50390618 None:intergenic 20.0%
!! ATAAACAATTATGAGTGTTT+GGG - chr7_3:50391138-50391157 Msa1107950:intron 20.0%
!!! ATTAGCTTAAAAGAACTTAT+AGG + chr7_3:50391197-50391216 None:intergenic 20.0%
!!! CTTTTAAGCTAATTTCAATA+AGG - chr7_3:50391204-50391223 Msa1107950:intron 20.0%
!! GAACACAAATTATACTTTAT+AGG - chr7_3:50391243-50391262 Msa1107950:intron 20.0%
!! TTTCTTTGATTATACTTTCT+AGG - chr7_3:50391293-50391312 Msa1107950:intron 20.0%
!! ATTGTTAAATATGAACACTT+CGG - chr7_3:50391571-50391590 Msa1107950:intron 20.0%
!! ATGAAATGGAAAAATTTGAT+TGG - chr7_3:50391963-50391982 Msa1107950:CDS 20.0%
!! CTTTACACTTACAAAAAATT+AGG + chr7_3:50392262-50392281 None:intergenic 20.0%
!! AATGCCTTATAATTTCAATA+GGG + chr7_3:50392346-50392365 None:intergenic 20.0%
!! TAATGCCTTATAATTTCAAT+AGG + chr7_3:50392347-50392366 None:intergenic 20.0%
!! AAAAATGAAGGAACAAGTTT+TGG + chr7_3:50386160-50386179 None:intergenic 25.0%
! CATTCATATTCATAAGAATC+GGG + chr7_3:50386183-50386202 None:intergenic 25.0%
! GCATTCATATTCATAAGAAT+CGG + chr7_3:50386184-50386203 None:intergenic 25.0%
! TGAAAAACGTTGAAATCTAA+GGG + chr7_3:50386260-50386279 None:intergenic 25.0%
! ATATTTCTTGTAGAAAACCA+CGG - chr7_3:50386302-50386321 Msa1107950:exon 25.0%
!!! TGGAATGTAATTTTAGCAAA+AGG - chr7_3:50386832-50386851 Msa1107950:intron 25.0%
!!! AATGTAATTTTAGCAAAAGG+CGG - chr7_3:50386835-50386854 Msa1107950:intron 25.0%
! ATCATATACCATAAGTTACA+CGG - chr7_3:50386889-50386908 Msa1107950:intron 25.0%
! TATTTAAACCGTGTAACTTA+TGG + chr7_3:50386900-50386919 None:intergenic 25.0%
! CAAAATGACACAGAAATATA+AGG - chr7_3:50386940-50386959 Msa1107950:intron 25.0%
! TAAACCATTAAATTCAAGCT+GGG - chr7_3:50386968-50386987 Msa1107950:intron 25.0%
! AAAAATTCCTTTATCTTGAG+TGG + chr7_3:50387042-50387061 None:intergenic 25.0%
!! AGTTTCTCTTATAGTTTTCT+AGG + chr7_3:50387308-50387327 None:intergenic 25.0%
! AGATCTTAAGATTAATGAGT+TGG - chr7_3:50387336-50387355 Msa1107950:intron 25.0%
!!! GTTTGGTTTTAGTGTTTAAT+TGG - chr7_3:50387482-50387501 Msa1107950:intron 25.0%
!!! AGTTTTGTTGTTTCTTAACA+TGG - chr7_3:50387685-50387704 Msa1107950:intron 25.0%
!! GTTGACAAAAGAATGATTTT+AGG + chr7_3:50388011-50388030 None:intergenic 25.0%
!!! AATTTTAGTTTGACCTCAAT+TGG + chr7_3:50388288-50388307 None:intergenic 25.0%
! AATTGAGGTCAAACTAAAAT+TGG - chr7_3:50388287-50388306 Msa1107950:intron 25.0%
!! CTCAACATAAAATTTGTTCT+TGG - chr7_3:50388382-50388401 Msa1107950:intron 25.0%
!!! ATTTGATAAAGTTCTGAAAC+CGG + chr7_3:50388446-50388465 None:intergenic 25.0%
!! TTTTATGGAGCCAAATTAAT+AGG - chr7_3:50388736-50388755 Msa1107950:intron 25.0%
! GACATCATTATTTGTCTTTA+TGG + chr7_3:50389117-50389136 None:intergenic 25.0%
! AAGATTCCCTATTATCTTAA+TGG - chr7_3:50389183-50389202 Msa1107950:intron 25.0%
!! TCTAAAACCACATATTTGAT+TGG - chr7_3:50389312-50389331 Msa1107950:intron 25.0%
! TTGTTCGAAAATATGTGAAT+AGG + chr7_3:50389395-50389414 None:intergenic 25.0%
! TGAATTTCCAATTTGTGTTT+GGG + chr7_3:50389455-50389474 None:intergenic 25.0%
!! TTATGGTGTTAATAAGCATA+AGG - chr7_3:50389623-50389642 Msa1107950:intron 25.0%
! ATTTACCAGTTTAGATAACA+CGG - chr7_3:50389809-50389828 Msa1107950:intron 25.0%
! AAATTATGTACTGCTTATGT+TGG - chr7_3:50389889-50389908 Msa1107950:intron 25.0%
! CTTTCTATTAATCAACCTTA+GGG + chr7_3:50389965-50389984 None:intergenic 25.0%
!!! TTGCTTACTTTTTTCCTATA+TGG - chr7_3:50390210-50390229 Msa1107950:intron 25.0%
!! ACAAATATTTGAGACCATAT+AGG + chr7_3:50390227-50390246 None:intergenic 25.0%
!! TGTGAGCATATCATAAATTT+TGG - chr7_3:50390244-50390263 Msa1107950:intron 25.0%
! ATATAAAACGACTAGATAAG+AGG + chr7_3:50390379-50390398 None:intergenic 25.0%
!!! AAGAGTTTAGGTTTTATCAA+AGG - chr7_3:50390710-50390729 Msa1107950:intron 25.0%
!!! AGAGTTTAGGTTTTATCAAA+GGG - chr7_3:50390711-50390730 Msa1107950:intron 25.0%
! TTCCATCTCAAATCATATAA+TGG - chr7_3:50391023-50391042 Msa1107950:intron 25.0%
!! TTTCATGTTTAGAACATGTT+TGG - chr7_3:50391076-50391095 Msa1107950:intron 25.0%
! CATAAACAATTATGAGTGTT+TGG - chr7_3:50391137-50391156 Msa1107950:intron 25.0%
! ATTTGTGTTCATAAGCTATT+TGG + chr7_3:50391233-50391252 None:intergenic 25.0%
! GGATAAACAACTTAATTAAG+CGG + chr7_3:50391422-50391441 None:intergenic 25.0%
! AAAATATTGAGAATGAGATG+TGG + chr7_3:50391511-50391530 None:intergenic 25.0%
!! CAATTTTCATTATCTAGAGA+GGG + chr7_3:50391555-50391574 None:intergenic 25.0%
!! ACAATTTTCATTATCTAGAG+AGG + chr7_3:50391556-50391575 None:intergenic 25.0%
! AATGGAAAAATTTGATTGGA+AGG - chr7_3:50391967-50391986 Msa1107950:CDS 25.0%
! ACTTCCCTATTGAAATTATA+AGG - chr7_3:50392339-50392358 Msa1107950:five_prime_UTR 25.0%
ATAAGAATCGGGAAAAATGA+AGG + chr7_3:50386172-50386191 None:intergenic 30.0%
ATCTAAGGGATACAATAGAA+GGG + chr7_3:50386246-50386265 None:intergenic 30.0%
AATCTAAGGGATACAATAGA+AGG + chr7_3:50386247-50386266 None:intergenic 30.0%
GTGAAAAACGTTGAAATCTA+AGG + chr7_3:50386261-50386280 None:intergenic 30.0%
!!! TTAATGGGTTTTGCTTGTAA+TGG + chr7_3:50386283-50386302 None:intergenic 30.0%
TCATGATGAAGAAGAAGATA+AGG - chr7_3:50386414-50386433 Msa1107950:CDS 30.0%
! GGCTAATGCTTTATTGAATT+CGG - chr7_3:50386588-50386607 Msa1107950:CDS 30.0%
! GCTAATGCTTTATTGAATTC+GGG - chr7_3:50386589-50386608 Msa1107950:CDS 30.0%
CAATGGTAAGAGTTTATACA+GGG - chr7_3:50386749-50386768 Msa1107950:CDS 30.0%
AATGACACAGAAATATAAGG+AGG - chr7_3:50386943-50386962 Msa1107950:intron 30.0%
GTAAACCATTAAATTCAAGC+TGG - chr7_3:50386967-50386986 Msa1107950:intron 30.0%
CGTATCAAATGAAACATCTA+AGG + chr7_3:50387013-50387032 None:intergenic 30.0%
AAGCAATTGAATTGTCTTGT+TGG - chr7_3:50387460-50387479 Msa1107950:intron 30.0%
! ATTGAATTGTCTTGTTGGTT+TGG - chr7_3:50387465-50387484 Msa1107950:intron 30.0%
CAAAAGACAGAATTGATGTT+TGG - chr7_3:50387833-50387852 Msa1107950:intron 30.0%
GATCTTAGAATTATACACCT+TGG - chr7_3:50387893-50387912 Msa1107950:CDS 30.0%
ATGTATCAGGATACAAAAAC+CGG - chr7_3:50388424-50388443 Msa1107950:intron 30.0%
TATTTGTCTCTTATAGGTGA+TGG - chr7_3:50388681-50388700 Msa1107950:CDS 30.0%
! TTTGGCTCCATAAAATTCTT+GGG + chr7_3:50388731-50388750 None:intergenic 30.0%
! ATTTGGCTCCATAAAATTCT+TGG + chr7_3:50388732-50388751 None:intergenic 30.0%
GTTATAAGCAATTGACAGTT+AGG + chr7_3:50388935-50388954 None:intergenic 30.0%
TCTGATTACAATGTAGAATG+TGG - chr7_3:50389056-50389075 Msa1107950:intron 30.0%
TGTGTGTTTGAATTACACAA+TGG - chr7_3:50389137-50389156 Msa1107950:intron 30.0%
ATCACAACCAATCAAATATG+TGG + chr7_3:50389322-50389341 None:intergenic 30.0%
! GAATAGGCAAACCAAATTTT+GGG + chr7_3:50389379-50389398 None:intergenic 30.0%
! TGAATAGGCAAACCAAATTT+TGG + chr7_3:50389380-50389399 None:intergenic 30.0%
TTCATTTCCCAAACACAAAT+TGG - chr7_3:50389445-50389464 Msa1107950:intron 30.0%
CTGAATTTCCAATTTGTGTT+TGG + chr7_3:50389456-50389475 None:intergenic 30.0%
TAGTCCAAGAATAATTTCAG+AGG - chr7_3:50389521-50389540 Msa1107950:intron 30.0%
!!! ACTGATACTACCTTATTTTC+AGG - chr7_3:50389678-50389697 Msa1107950:CDS 30.0%
!!! CTACCTTATTTTCAGGTTTT+TGG - chr7_3:50389685-50389704 Msa1107950:CDS 30.0%
GTTGTACTTTATAAACCCTA+AGG - chr7_3:50389947-50389966 Msa1107950:intron 30.0%
CCTTTCTATTAATCAACCTT+AGG + chr7_3:50389966-50389985 None:intergenic 30.0%
! CCTAAGGTTGATTAATAGAA+AGG - chr7_3:50389963-50389982 Msa1107950:CDS 30.0%
TGATTAATAGAAAGGTGATG+CGG - chr7_3:50389971-50389990 Msa1107950:CDS 30.0%
! TATCTTTTTACCTTTGAACC+AGG - chr7_3:50390076-50390095 Msa1107950:intron 30.0%
TTCCAAGATATACCTTTAGT+TGG - chr7_3:50390145-50390164 Msa1107950:intron 30.0%
! TCGTTTTATATATGCTTAGC+TGG - chr7_3:50390388-50390407 Msa1107950:intron 30.0%
! TATATGATTTGAGATGGAAG+AGG + chr7_3:50391022-50391041 None:intergenic 30.0%
!! TTCCATTTTATGATGGTGAT+TGG + chr7_3:50391049-50391068 None:intergenic 30.0%
! CGAGAAATTCCATTTTATGA+TGG + chr7_3:50391056-50391075 None:intergenic 30.0%
TGACTTCTGAACAGTTTATT+TGG - chr7_3:50391101-50391120 Msa1107950:intron 30.0%
GACTTCTGAACAGTTTATTT+GGG - chr7_3:50391102-50391121 Msa1107950:intron 30.0%
CAACTTAATTAAGCGGTTAT+CGG + chr7_3:50391415-50391434 None:intergenic 30.0%
ATCCTCAAAAGAAAGAGAAA+GGG + chr7_3:50391452-50391471 None:intergenic 30.0%
AATCCTCAAAAGAAAGAGAA+AGG + chr7_3:50391453-50391472 None:intergenic 30.0%
!! TTCTCTTTCTTTTGAGGATT+TGG - chr7_3:50391453-50391472 Msa1107950:intron 30.0%
TGATGATTTCTTTAACTACC+AGG - chr7_3:50391609-50391628 Msa1107950:intron 30.0%
GATGATTTCTTTAACTACCA+GGG - chr7_3:50391610-50391629 Msa1107950:intron 30.0%
TATTATTGAGACCCTTACAA+TGG - chr7_3:50392059-50392078 Msa1107950:CDS 30.0%
!! TATAGTTAACTTGTGGTGAT+GGG + chr7_3:50392102-50392121 None:intergenic 30.0%
! CATCATCTATAGTTAACTTG+TGG + chr7_3:50392109-50392128 None:intergenic 30.0%
ATGCAGCTTATAATGTGATA+TGG - chr7_3:50392229-50392248 Msa1107950:CDS 30.0%
ATTACCCTTTCCAACTTCTT+TGG - chr7_3:50386089-50386108 Msa1107950:three_prime_UTR 35.0%
GAATCCAAAGAAGTTGGAAA+GGG + chr7_3:50386096-50386115 None:intergenic 35.0%
AGAATCCAAAGAAGTTGGAA+AGG + chr7_3:50386097-50386116 None:intergenic 35.0%
GAGAAAGAATCCAAAGAAGT+TGG + chr7_3:50386102-50386121 None:intergenic 35.0%
TTCTGCTTTATCCATGTTAG+TGG + chr7_3:50386386-50386405 None:intergenic 35.0%
TGAAGAAGAAGATAAGGAAG+AGG - chr7_3:50386420-50386439 Msa1107950:CDS 35.0%
GAAGAAGAAGATAAGGAAGA+GGG - chr7_3:50386421-50386440 Msa1107950:CDS 35.0%
CTTCTTCTACTGAAAATGAG+AGG - chr7_3:50386452-50386471 Msa1107950:CDS 35.0%
CTGAAAATGAGAGGAATTCA+AGG - chr7_3:50386461-50386480 Msa1107950:CDS 35.0%
AAAAATAGGACTCACGCAAA+TGG + chr7_3:50386520-50386539 None:intergenic 35.0%
! AACTCCCATTGTGATTGTTT+TGG - chr7_3:50386637-50386656 Msa1107950:CDS 35.0%
GAAGCCAAAACAATCACAAT+GGG + chr7_3:50386644-50386663 None:intergenic 35.0%
AGAAGCCAAAACAATCACAA+TGG + chr7_3:50386645-50386664 None:intergenic 35.0%
CCTGTATAAACTCTTACCAT+TGG + chr7_3:50386751-50386770 None:intergenic 35.0%
CCAATGGTAAGAGTTTATAC+AGG - chr7_3:50386748-50386767 Msa1107950:CDS 35.0%
AAGAGTTTATACAGGGAATG+AGG - chr7_3:50386756-50386775 Msa1107950:CDS 35.0%
CAGAAGTAAGACAAAGTACA+TGG - chr7_3:50386812-50386831 Msa1107950:intron 35.0%
!! GAAAGTACCACTCAAGATAA+AGG - chr7_3:50387032-50387051 Msa1107950:intron 35.0%
CTACTACGCACAATTTATGT+TGG + chr7_3:50387126-50387145 None:intergenic 35.0%
TGCACCTATAGAAGAAAAGA+AGG - chr7_3:50387174-50387193 Msa1107950:intron 35.0%
ACCTATAGAAGAAAAGAAGG+TGG - chr7_3:50387177-50387196 Msa1107950:intron 35.0%
! TCCACCTTCTTTTCTTCTAT+AGG + chr7_3:50387181-50387200 None:intergenic 35.0%
AAGGAGATTCAAATCACAAG+AGG - chr7_3:50387272-50387291 Msa1107950:intron 35.0%
ATTCAAATCACAAGAGGTAG+AGG - chr7_3:50387278-50387297 Msa1107950:intron 35.0%
! TACTTTCCATGATTAGCTGT+TGG - chr7_3:50387640-50387659 Msa1107950:intron 35.0%
! GATTTTCCAACAGCTAATCA+TGG + chr7_3:50387649-50387668 None:intergenic 35.0%
GGAAAGTGAGCATAAATAGT+TGG - chr7_3:50387854-50387873 Msa1107950:intron 35.0%
TTGTGCATACTAACAGCTTT+AGG + chr7_3:50387951-50387970 None:intergenic 35.0%
TGCACAAATTAATCTCCGAA+TGG - chr7_3:50387964-50387983 Msa1107950:intron 35.0%
GCACAAATTAATCTCCGAAT+GGG - chr7_3:50387965-50387984 Msa1107950:intron 35.0%
!! GTGATAACTTGTTTCATCAC+TGG + chr7_3:50388204-50388223 None:intergenic 35.0%
CCTGATACATATCTGCAAAA+CGG + chr7_3:50388414-50388433 None:intergenic 35.0%
TATCAAATGCCTTCGAGAAA+TGG - chr7_3:50388458-50388477 Msa1107950:intron 35.0%
ATCAAATGCCTTCGAGAAAT+GGG - chr7_3:50388459-50388478 Msa1107950:intron 35.0%
TTGGCTCCATAAAATTCTTG+GGG + chr7_3:50388730-50388749 None:intergenic 35.0%
GAGCCAAATTAATAGGATCT+TGG - chr7_3:50388743-50388762 Msa1107950:intron 35.0%
CCTCCAAGATCCTATTAATT+TGG + chr7_3:50388749-50388768 None:intergenic 35.0%
CCAAATTAATAGGATCTTGG+AGG - chr7_3:50388746-50388765 Msa1107950:intron 35.0%
CAGTAAGTACTATGTACTTG+CGG - chr7_3:50388998-50389017 Msa1107950:intron 35.0%
GTGTTTGAATTACACAATGG+TGG - chr7_3:50389140-50389159 Msa1107950:intron 35.0%
ACTCACGCATTAAAAACGTT+TGG - chr7_3:50389272-50389291 Msa1107950:intron 35.0%
GCTCTTCAATACCCAAAATT+TGG - chr7_3:50389365-50389384 Msa1107950:intron 35.0%
!! GCTACCTCTGAAATTATTCT+TGG + chr7_3:50389528-50389547 None:intergenic 35.0%
GAATAATTTCAGAGGTAGCT+CGG - chr7_3:50389529-50389548 Msa1107950:intron 35.0%
GATGATGCATGTATTATGTC+AGG + chr7_3:50389561-50389580 None:intergenic 35.0%
ATAATACATGCATCATCACC+AGG - chr7_3:50389564-50389583 Msa1107950:intron 35.0%
GCACCAAAAACCTGAAAATA+AGG + chr7_3:50389691-50389710 None:intergenic 35.0%
GTATGATAGGACATGACAAT+TGG + chr7_3:50389742-50389761 None:intergenic 35.0%
TGAAACTTACACTGGTACAT+GGG + chr7_3:50389764-50389783 None:intergenic 35.0%
AATCTGACTGAAACTTACAC+TGG + chr7_3:50389772-50389791 None:intergenic 35.0%
!! TATGTTGGAAGTGTTTGACA+TGG - chr7_3:50389904-50389923 Msa1107950:intron 35.0%
GGTATATCTTGGAATGTATC+TGG + chr7_3:50390139-50390158 None:intergenic 35.0%
! AGCCAACTAAAGGTATATCT+TGG + chr7_3:50390150-50390169 None:intergenic 35.0%
!! CAATTTTGCTGCATTGACAA+AGG + chr7_3:50390448-50390467 None:intergenic 35.0%
CTTTGTCAATGCAGCAAAAT+TGG - chr7_3:50390446-50390465 Msa1107950:intron 35.0%
!! AAGATTCGTCTTTGGAACAA+AGG - chr7_3:50390506-50390525 Msa1107950:intron 35.0%
TTAATCGCATTTCGTGTGAA+CGG + chr7_3:50390562-50390581 None:intergenic 35.0%
ACGAAATGCGATTAAGACTA+AGG - chr7_3:50390567-50390586 Msa1107950:intron 35.0%
! CAGTTTTCATCTTACAGCAA+CGG - chr7_3:50390638-50390657 Msa1107950:intron 35.0%
! AAACCCTTGATAGTTCATGT+TGG - chr7_3:50390671-50390690 Msa1107950:intron 35.0%
CTTGGAGTTGAAAAGAGTTT+AGG - chr7_3:50390698-50390717 Msa1107950:intron 35.0%
GTCATAATAAGTCACCTGTA+CGG + chr7_3:50390916-50390935 None:intergenic 35.0%
ATATCTGTTCCAGTTGTGTA+TGG - chr7_3:50390950-50390969 Msa1107950:intron 35.0%
!! GTATGGCAGCTTTTAACTAA+TGG - chr7_3:50390967-50390986 Msa1107950:intron 35.0%
GGCCATTATATGATTTGAGA+TGG + chr7_3:50391028-50391047 None:intergenic 35.0%
!! TCTTTCTTTTGAGGATTTGG+AGG - chr7_3:50391456-50391475 Msa1107950:intron 35.0%
GAGCTAGAGAAAATGTTTGA+AGG - chr7_3:50391635-50391654 Msa1107950:intron 35.0%
TATTCACAGGAATGTTAGGA+GGG - chr7_3:50391669-50391688 Msa1107950:intron 35.0%
! AATAATATCTGGAATGCCTC+CGG + chr7_3:50391816-50391835 None:intergenic 35.0%
TGATCTGCAGGAATAATATC+TGG + chr7_3:50391827-50391846 None:intergenic 35.0%
ATTATTCCTGCAGATCAAGA+AGG - chr7_3:50391830-50391849 Msa1107950:intron 35.0%
ACAGGTTATCTCTATAATCC+AGG - chr7_3:50391857-50391876 Msa1107950:intron 35.0%
CAGGTTATCTCTATAATCCA+GGG - chr7_3:50391858-50391877 Msa1107950:intron 35.0%
AGGTTATCTCTATAATCCAG+GGG - chr7_3:50391859-50391878 Msa1107950:intron 35.0%
AACTCTTTGTCGAACAAAAG+GGG + chr7_3:50391914-50391933 None:intergenic 35.0%
CAACTCTTTGTCGAACAAAA+GGG + chr7_3:50391915-50391934 None:intergenic 35.0%
TCAACTCTTTGTCGAACAAA+AGG + chr7_3:50391916-50391935 None:intergenic 35.0%
AAAGAGTTGAGAGAAACCAT+AGG - chr7_3:50391926-50391945 Msa1107950:CDS 35.0%
AAAAGCTGCACGTAATGAAA+TGG - chr7_3:50391949-50391968 Msa1107950:CDS 35.0%
CGTTTACTGATCCATTGTAA+GGG + chr7_3:50392073-50392092 None:intergenic 35.0%
ACGTTTACTGATCCATTGTA+AGG + chr7_3:50392074-50392093 None:intergenic 35.0%
!! CTATAGTTAACTTGTGGTGA+TGG + chr7_3:50392103-50392122 None:intergenic 35.0%
GTGTTAAATCAAACCAAGCA+AGG + chr7_3:50392164-50392183 None:intergenic 35.0%
AATAGGGTCATGAAGGATTT+AGG + chr7_3:50392301-50392320 None:intergenic 35.0%
TAGATAGAATAGGGTCATGA+AGG + chr7_3:50392308-50392327 None:intergenic 35.0%
GAAAGGGTAATGTGAGTGAA+TGG + chr7_3:50386080-50386099 None:intergenic 40.0%
! GGTATGATGATGAAGTGGAA+AGG + chr7_3:50386225-50386244 None:intergenic 40.0%
! AGAAGGGTATGATGATGAAG+TGG + chr7_3:50386230-50386249 None:intergenic 40.0%
!! TAGTGTTGACTTGATAGCGT+TGG + chr7_3:50386695-50386714 None:intergenic 40.0%
CAAGTCAACACTATAACCAG+TGG - chr7_3:50386702-50386721 Msa1107950:CDS 40.0%
TAACCAGTGGTGTAATGTCT+AGG - chr7_3:50386715-50386734 Msa1107950:CDS 40.0%
TTTCCTAGACATTACACCAC+TGG + chr7_3:50386721-50386740 None:intergenic 40.0%
! TCTAGGAAAGTGTAGTCCAA+TGG - chr7_3:50386732-50386751 Msa1107950:CDS 40.0%
TTGTCTTACTTCTGCTCAGA+GGG + chr7_3:50386806-50386825 None:intergenic 40.0%
TTTGTCTTACTTCTGCTCAG+AGG + chr7_3:50386807-50386826 None:intergenic 40.0%
TTACACCTCTAAGCTAGGAA+CGG + chr7_3:50386862-50386881 None:intergenic 40.0%
TCAACTTACACCTCTAAGCT+AGG + chr7_3:50386867-50386886 None:intergenic 40.0%
ACCATTAAATTCAAGCTGGG+TGG - chr7_3:50386971-50386990 Msa1107950:intron 40.0%
ACCACCCAGCTTGAATTTAA+TGG + chr7_3:50386975-50386994 None:intergenic 40.0%
TTCAAGCTGGGTGGTTTAAA+TGG - chr7_3:50386980-50386999 Msa1107950:intron 40.0%
TTATCGGACATCTGTAAGAC+TGG - chr7_3:50387063-50387082 Msa1107950:intron 40.0%
AATTGTGCGTAGTAGAGATG+AGG - chr7_3:50387131-50387150 Msa1107950:intron 40.0%
TAGTAGAGATGAGGATGTTG+CGG - chr7_3:50387140-50387159 Msa1107950:intron 40.0%
AGGATGTTGCGGTAAGATTA+GGG - chr7_3:50387151-50387170 Msa1107950:intron 40.0%
AGAAGGTGGAAACTAGACTT+AGG - chr7_3:50387191-50387210 Msa1107950:intron 40.0%
AAGGAGAGTAGATCAGAAGA+AGG - chr7_3:50387253-50387272 Msa1107950:intron 40.0%
TTTGTTTGCTTAGCAGTGTG+TGG - chr7_3:50387611-50387630 Msa1107950:intron 40.0%
! TACACCTTGGTCTTTGAAAG+TGG - chr7_3:50387906-50387925 Msa1107950:CDS 40.0%
GAATGTGAAGTTGACCCATT+CGG + chr7_3:50387982-50388001 None:intergenic 40.0%
TCTTTACTAATCCACCGTTC+GGG + chr7_3:50388122-50388141 None:intergenic 40.0%
GTCTTTACTAATCCACCGTT+CGG + chr7_3:50388123-50388142 None:intergenic 40.0%
! GGATTAGTAAAGACGAAGGA+TGG - chr7_3:50388129-50388148 Msa1107950:CDS 40.0%
TCTGCATTGCATTCCAATTG+AGG - chr7_3:50388272-50388291 Msa1107950:intron 40.0%
! CCGTTTTGCAGATATGTATC+AGG - chr7_3:50388411-50388430 Msa1107950:intron 40.0%
ATGGTTGTGACAACGCATAA+AGG - chr7_3:50388700-50388719 Msa1107950:CDS 40.0%
! GGAGTTCCCCAAGAATTTTA+TGG - chr7_3:50388721-50388740 Msa1107950:CDS 40.0%
CGCAAGTACATAGTACTTAC+TGG + chr7_3:50389000-50389019 None:intergenic 40.0%
CTGAAACTTACACTGGTACA+TGG + chr7_3:50389765-50389784 None:intergenic 40.0%
AAGAGCCGTGTTATCTAAAC+TGG + chr7_3:50389817-50389836 None:intergenic 40.0%
CAACAAGATGATGTCTGATC+TGG - chr7_3:50389858-50389877 Msa1107950:intron 40.0%
GTACTTATGACCAACCACAT+CGG + chr7_3:50390180-50390199 None:intergenic 40.0%
TGTCAATGCAGCAAAATTGG+TGG - chr7_3:50390449-50390468 Msa1107950:intron 40.0%
CAAAGACGAATCTTGTTAGC+TGG + chr7_3:50390500-50390519 None:intergenic 40.0%
CAGCTAACAAGATTCGTCTT+TGG - chr7_3:50390498-50390517 Msa1107950:intron 40.0%
TGAACTATCAAGGGTTTCTC+AGG + chr7_3:50390668-50390687 None:intergenic 40.0%
CGTCCAACATGAACTATCAA+GGG + chr7_3:50390677-50390696 None:intergenic 40.0%
! CCTTGATAGTTCATGTTGGA+CGG - chr7_3:50390675-50390694 Msa1107950:intron 40.0%
TGTTTGACACCTGAACCAAA+TGG - chr7_3:50390833-50390852 Msa1107950:intron 40.0%
!! CTGAACCAAATGGTTTTGCA+GGG - chr7_3:50390843-50390862 Msa1107950:intron 40.0%
TAAAAGCTGCCATACACAAC+TGG + chr7_3:50390962-50390981 None:intergenic 40.0%
GGCCAATCACCATCATAAAA+TGG - chr7_3:50391044-50391063 Msa1107950:intron 40.0%
! TGCCCTTTCTCTTTCTTTTG+AGG - chr7_3:50391447-50391466 Msa1107950:intron 40.0%
GATTTCTTTAACTACCAGGG+AGG - chr7_3:50391613-50391632 Msa1107950:intron 40.0%
AACATTCCTGTGAATACTGC+AGG + chr7_3:50391665-50391684 None:intergenic 40.0%
GCAGTATTCACAGGAATGTT+AGG - chr7_3:50391665-50391684 Msa1107950:intron 40.0%
GTATTCACAGGAATGTTAGG+AGG - chr7_3:50391668-50391687 Msa1107950:intron 40.0%
ATTCACAGGAATGTTAGGAG+GGG - chr7_3:50391670-50391689 Msa1107950:intron 40.0%
! AACACTTGGCTTCGTTGTTT+TGG - chr7_3:50391751-50391770 Msa1107950:intron 40.0%
! GTTTTACCTTCTTGATCTGC+AGG + chr7_3:50391839-50391858 None:intergenic 40.0%
GCAGATCAAGAAGGTAAAAC+AGG - chr7_3:50391839-50391858 Msa1107950:intron 40.0%
! ATTACGTGCAGCTTTTCCTA+TGG + chr7_3:50391945-50391964 None:intergenic 40.0%
TTCATTTCGAACCTTTCGTG+TGG + chr7_3:50391996-50392015 None:intergenic 40.0%
AACAATACAATGCTGCCATC+TGG - chr7_3:50392014-50392033 Msa1107950:CDS 40.0%
GGAACAATCGTACTAAGCTT+GGG + chr7_3:50392143-50392162 None:intergenic 40.0%
AGGAACAATCGTACTAAGCT+TGG + chr7_3:50392144-50392163 None:intergenic 40.0%
TAGTACGATTGTTCCTTGCT+TGG - chr7_3:50392148-50392167 Msa1107950:CDS 40.0%
TGTGCTTGAAGCCACTAACA+TGG - chr7_3:50386372-50386391 Msa1107950:CDS 45.0%
ACAAAGAGAGCAATTCGACG+AGG + chr7_3:50386487-50386506 None:intergenic 45.0%
AAGCTGGGTGGTTTAAATGG+AGG - chr7_3:50386983-50387002 Msa1107950:intron 45.0%
GAGGATGTTGCGGTAAGATT+AGG - chr7_3:50387150-50387169 Msa1107950:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr7_3:50387417-50387436 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr7_3:50387418-50387437 None:intergenic 45.0%
!! GTTGCCACTTTCAAAGACCA+AGG + chr7_3:50387913-50387932 None:intergenic 45.0%
AGTGGCAACATGAGTTGCTT+TGG - chr7_3:50387924-50387943 Msa1107950:intron 45.0%
!! CGGTGGATTAGTAAAGACGA+AGG - chr7_3:50388125-50388144 Msa1107950:CDS 45.0%
! AGACGAAGGATGGATTTGTG+AGG - chr7_3:50388139-50388158 Msa1107950:intron 45.0%
! GAAGGATGGATTTGTGAGGT+CGG - chr7_3:50388143-50388162 Msa1107950:intron 45.0%
TACGTTCTGATACCAAGGGA+GGG + chr7_3:50389484-50389503 None:intergenic 45.0%
TGCATCATCACCAGGCATAA+TGG - chr7_3:50389572-50389591 Msa1107950:intron 45.0%
TCATCACCAGGCATAATGGT+TGG - chr7_3:50389576-50389595 Msa1107950:intron 45.0%
CACTGGTACATGGGTATGAT+AGG + chr7_3:50389755-50389774 None:intergenic 45.0%
CGGTTTCACTAGCCAACTAA+AGG + chr7_3:50390160-50390179 None:intergenic 45.0%
ATTTCGTGTGAACGGAATCG+TGG + chr7_3:50390554-50390573 None:intergenic 45.0%
CCGTCCAACATGAACTATCA+AGG + chr7_3:50390678-50390697 None:intergenic 45.0%
ATAGTTCATGTTGGACGGCT+TGG - chr7_3:50390680-50390699 Msa1107950:intron 45.0%
! CCTGCAAAACCATTTGGTTC+AGG + chr7_3:50390845-50390864 None:intergenic 45.0%
!! CCTGAACCAAATGGTTTTGC+AGG - chr7_3:50390842-50390861 Msa1107950:intron 45.0%
CATGACCCTGCAAAACCATT+TGG + chr7_3:50390851-50390870 None:intergenic 45.0%
!! CAAATGGTTTTGCAGGGTCA+TGG - chr7_3:50390849-50390868 Msa1107950:intron 45.0%
ATGAAAGCAACTCGAGCTTC+AGG + chr7_3:50390883-50390902 None:intergenic 45.0%
! GAAGCTCGAGTTGCTTTCAT+CGG - chr7_3:50390883-50390902 Msa1107950:intron 45.0%
! AGAAAGAGAAAGGGCATGCT+TGG + chr7_3:50391443-50391462 None:intergenic 45.0%
GGACTGAAATCTCTAGACAG+AGG + chr7_3:50391490-50391509 None:intergenic 45.0%
CTCTCTCAAGCATATGCTAG+TGG - chr7_3:50391698-50391717 Msa1107950:intron 45.0%
! CCAAGTGTTTCTGACTCTGA+AGG + chr7_3:50391740-50391759 None:intergenic 45.0%
CCTTCAGAGTCAGAAACACT+TGG - chr7_3:50391737-50391756 Msa1107950:intron 45.0%
!!! ACTTGGCTTCGTTGTTTTGG+AGG - chr7_3:50391754-50391773 Msa1107950:intron 45.0%
!!! TGTTTTGGAGGCCATGTCTT+CGG - chr7_3:50391766-50391785 Msa1107950:intron 45.0%
!! TTCTTATATTTATTAAATTA+TGG - chr7_3:50389606-50389625 Msa1107950:intron 5.0%
! GCTTGAAAAGAGCACAACCG+TGG + chr7_3:50386322-50386341 None:intergenic 50.0%
AGGACTCACGCAAATGGAGA+AGG + chr7_3:50386514-50386533 None:intergenic 50.0%
CTGGGTGGTTTAAATGGAGG+AGG - chr7_3:50386986-50387005 Msa1107950:intron 50.0%
GCATGTAGAGAGAAGACCCA+CGG - chr7_3:50387222-50387241 Msa1107950:intron 50.0%
GGTCGGCTACATGGATCAAA+CGG + chr7_3:50387396-50387415 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr7_3:50387413-50387432 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr7_3:50387419-50387438 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr7_3:50387416-50387435 Msa1107950:intron 50.0%
TCGGGCAAGTAGGTAACACA+TGG + chr7_3:50388104-50388123 None:intergenic 50.0%
GTGTTACCTACTTGCCCGAA+CGG - chr7_3:50388105-50388124 Msa1107950:CDS 50.0%
CCTCATCTCCCATTTCTCGA+AGG + chr7_3:50388470-50388489 None:intergenic 50.0%
CCTTCGAGAAATGGGAGATG+AGG - chr7_3:50388467-50388486 Msa1107950:intron 50.0%
AATTCAGCTTTCCCCTCCCT+TGG - chr7_3:50389469-50389488 Msa1107950:intron 50.0%
ACGTTCTGATACCAAGGGAG+GGG + chr7_3:50389483-50389502 None:intergenic 50.0%
GTACGTTCTGATACCAAGGG+AGG + chr7_3:50389485-50389504 None:intergenic 50.0%
GCGGTACGTTCTGATACCAA+GGG + chr7_3:50389488-50389507 None:intergenic 50.0%
AGCGGTACGTTCTGATACCA+AGG + chr7_3:50389489-50389508 None:intergenic 50.0%
TCAGAACGTACCGCTCTCTT+TGG - chr7_3:50389494-50389513 Msa1107950:intron 50.0%
GGACTAAGTGCCAAAGAGAG+CGG + chr7_3:50389507-50389526 None:intergenic 50.0%
TGCAGACCAACCATTATGCC+TGG + chr7_3:50389585-50389604 None:intergenic 50.0%
GTCGGAGACATAGACACACT+TGG - chr7_3:50390004-50390023 Msa1107950:intron 50.0%
GGAACAGCAACCTGGTTCAA+AGG + chr7_3:50390089-50390108 None:intergenic 50.0%
AAGCTGTTGGAACAGCAACC+TGG + chr7_3:50390097-50390116 None:intergenic 50.0%
GTTGGCTAGTGAAACCGATG+TGG - chr7_3:50390163-50390182 Msa1107950:intron 50.0%
GCTAGTGAAACCGATGTGGT+TGG - chr7_3:50390167-50390186 Msa1107950:intron 50.0%
!! TGGTGCCATCTGTTGCCATT+GGG - chr7_3:50390309-50390328 Msa1107950:intron 50.0%
CATTGGGAGGGATCTTCAAG+CGG - chr7_3:50390325-50390344 Msa1107950:intron 50.0%
! CGAGTTGCTTTCATCGGAGA+TGG - chr7_3:50390889-50390908 Msa1107950:intron 50.0%
!! CATTTTCTCTAGCTCCTCCC+TGG + chr7_3:50391630-50391649 None:intergenic 50.0%
GGTATGCCTGCAGTATTCAC+AGG - chr7_3:50391656-50391675 Msa1107950:intron 50.0%
!!! GTTTTGGAGGCCATGTCTTC+GGG - chr7_3:50391767-50391786 Msa1107950:intron 50.0%
!! TTTTGGAGGCCATGTCTTCG+GGG - chr7_3:50391768-50391787 Msa1107950:intron 50.0%
AAGCAGTCTTCAAGATCCCC+TGG + chr7_3:50391878-50391897 None:intergenic 50.0%
! ACAATGCTGCCATCTGGTTC+TGG - chr7_3:50392020-50392039 Msa1107950:CDS 50.0%
TTTCTTGCGCCAGAACCAGA+TGG + chr7_3:50392032-50392051 None:intergenic 50.0%
!! TCTGGTTCTGGCGCAAGAAA+AGG - chr7_3:50392032-50392051 Msa1107950:CDS 50.0%
!! CTGGTTCTGGCGCAAGAAAA+GGG - chr7_3:50392033-50392052 Msa1107950:CDS 50.0%
! AAGACCCACGGACTGTGGTA+AGG - chr7_3:50387234-50387253 Msa1107950:intron 55.0%
CTCTCCTTACCACAGTCCGT+GGG + chr7_3:50387241-50387260 None:intergenic 55.0%
ACTCTCCTTACCACAGTCCG+TGG + chr7_3:50387242-50387261 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr7_3:50387405-50387424 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr7_3:50387404-50387423 Msa1107950:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr7_3:50387405-50387424 Msa1107950:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr7_3:50387411-50387430 Msa1107950:intron 55.0%
TTACCTACTTGCCCGAACGG+TGG - chr7_3:50388108-50388127 Msa1107950:CDS 55.0%
AATCCACCGTTCGGGCAAGT+AGG + chr7_3:50388114-50388133 None:intergenic 55.0%
TGATGCGGCTTCTCTGCAGT+CGG - chr7_3:50389986-50390005 Msa1107950:CDS 55.0%
CAACAGATGGCACCAGAGTC+AGG + chr7_3:50390304-50390323 None:intergenic 55.0%
!! CTGGTGCCATCTGTTGCCAT+TGG - chr7_3:50390308-50390327 Msa1107950:intron 55.0%
TGCCATCTGTTGCCATTGGG+AGG - chr7_3:50390312-50390331 Msa1107950:intron 55.0%
GCCATCTGTTGCCATTGGGA+GGG - chr7_3:50390313-50390332 Msa1107950:intron 55.0%
TCCCTCCCAATGGCAACAGA+TGG + chr7_3:50390317-50390336 None:intergenic 55.0%
CGCTTGAAGATCCCTCCCAA+TGG + chr7_3:50390327-50390346 None:intergenic 55.0%
CAAGCGGCTAGAGTAACAGC+AGG - chr7_3:50390341-50390360 Msa1107950:intron 55.0%
CGTGTGAACGGAATCGTGGA+TGG + chr7_3:50390550-50390569 None:intergenic 55.0%
TCATCGGAGATGGACCGTAC+AGG - chr7_3:50390899-50390918 Msa1107950:intron 55.0%
CACAGGTATCCCCGAAGACA+TGG + chr7_3:50391780-50391799 None:intergenic 55.0%
CATGTCTTCGGGGATACCTG+TGG - chr7_3:50391778-50391797 Msa1107950:intron 55.0%
TTGGAAGGCAGCCACACGAA+AGG - chr7_3:50391982-50392001 Msa1107950:CDS 55.0%
GCGGACCGTTCCTAGCTTAG+AGG - chr7_3:50386854-50386873 Msa1107950:intron 60.0%
! GAGAGAAGACCCACGGACTG+TGG - chr7_3:50387229-50387248 Msa1107950:intron 60.0%
CAGAGCAGCTGACCTGACTC+TGG - chr7_3:50390289-50390308 Msa1107950:intron 60.0%
GTCTTCGGGGATACCTGTGG+TGG - chr7_3:50391781-50391800 Msa1107950:intron 60.0%
CCTGTGGTGGCAGCACGCGC+CGG - chr7_3:50391794-50391813 Msa1107950:intron 75.0%
! CCGGCGCGTGCTGCCACCAC+AGG + chr7_3:50391797-50391816 None:intergenic 80.0%
! GTGGTGGCAGCACGCGCCGG+AGG - chr7_3:50391797-50391816 Msa1107950:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 50386049 50392394 50386049 ID=Msa1107950;Name=Msa1107950
chr7_3 mRNA 50386049 50392394 50386049 ID=Msa1107950-mRNA-1;Parent=Msa1107950;Name=Msa1107950-mRNA-1;_AED=0.12;_eAED=0.12;_QI=141|0.88|0.9|1|1|1|10|268|484
chr7_3 exon 50386049 50386812 50386049 ID=Msa1107950-mRNA-1:exon:10336;Parent=Msa1107950-mRNA-1
chr7_3 exon 50387523 50387579 50387523 ID=Msa1107950-mRNA-1:exon:10335;Parent=Msa1107950-mRNA-1
chr7_3 exon 50387711 50387788 50387711 ID=Msa1107950-mRNA-1:exon:10334;Parent=Msa1107950-mRNA-1
chr7_3 exon 50387855 50387942 50387855 ID=Msa1107950-mRNA-1:exon:10333;Parent=Msa1107950-mRNA-1
chr7_3 exon 50388081 50388151 50388081 ID=Msa1107950-mRNA-1:exon:10332;Parent=Msa1107950-mRNA-1
chr7_3 exon 50388670 50388743 50388670 ID=Msa1107950-mRNA-1:exon:10331;Parent=Msa1107950-mRNA-1
chr7_3 exon 50388850 50388967 50388850 ID=Msa1107950-mRNA-1:exon:10330;Parent=Msa1107950-mRNA-1
chr7_3 exon 50389676 50389746 50389676 ID=Msa1107950-mRNA-1:exon:10329;Parent=Msa1107950-mRNA-1
chr7_3 exon 50389955 50390021 50389955 ID=Msa1107950-mRNA-1:exon:10328;Parent=Msa1107950-mRNA-1
chr7_3 exon 50391919 50392394 50391919 ID=Msa1107950-mRNA-1:exon:10327;Parent=Msa1107950-mRNA-1
chr7_3 five_prime_UTR 50392254 50392394 50392254 ID=Msa1107950-mRNA-1:five_prime_utr;Parent=Msa1107950-mRNA-1
chr7_3 CDS 50391919 50392253 50391919 ID=Msa1107950-mRNA-1:cds;Parent=Msa1107950-mRNA-1
chr7_3 CDS 50389955 50390021 50389955 ID=Msa1107950-mRNA-1:cds;Parent=Msa1107950-mRNA-1
chr7_3 CDS 50389676 50389746 50389676 ID=Msa1107950-mRNA-1:cds;Parent=Msa1107950-mRNA-1
chr7_3 CDS 50388850 50388967 50388850 ID=Msa1107950-mRNA-1:cds;Parent=Msa1107950-mRNA-1
chr7_3 CDS 50388670 50388743 50388670 ID=Msa1107950-mRNA-1:cds;Parent=Msa1107950-mRNA-1
chr7_3 CDS 50388081 50388151 50388081 ID=Msa1107950-mRNA-1:cds;Parent=Msa1107950-mRNA-1
chr7_3 CDS 50387855 50387942 50387855 ID=Msa1107950-mRNA-1:cds;Parent=Msa1107950-mRNA-1
chr7_3 CDS 50387711 50387788 50387711 ID=Msa1107950-mRNA-1:cds;Parent=Msa1107950-mRNA-1
chr7_3 CDS 50387523 50387579 50387523 ID=Msa1107950-mRNA-1:cds;Parent=Msa1107950-mRNA-1
chr7_3 CDS 50386317 50386812 50386317 ID=Msa1107950-mRNA-1:cds;Parent=Msa1107950-mRNA-1
chr7_3 three_prime_UTR 50386049 50386316 50386049 ID=Msa1107950-mRNA-1:three_prime_utr;Parent=Msa1107950-mRNA-1
Gene Sequence

>Msa1107950

ATGAATATGAATGCTACTTCACTCTCTATAAACCTTTCCACTTCATCATCATACCCTTCTATTGTATCCCTTAGATTTCAACGTTTTTCACCATTACAAGCAAAACCCATTAATATTTCTTGTAGAAAACCACGGTTGTGCTCTTTTCAAGCGTCAAAAACAGTGAATTGTAGAAAAAGTTTTGTGCTTGAAGCCACTAACATGGATAAAGCAGAAGTTGATTCTCATGATGAAGAAGAAGATAAGGAAGAGGGTACTTCTTCTTCTTCTACTGAAAATGAGAGGAATTCAAGGCCTCGTCGAATTGCTCTCTTTGTTGAACCTTCTCCATTTGCATATGTATCAGGATACAAAAACCGGTTTCAGAACTTTATCAAATGCCTTCGAGAAATGGGAGATGAGGTGATGGTTGTGACAACGCATAAAGGAGTTCCCCAAGAATTTTATGGAGCCAAATTAATAGGATCTTGGAGCTTTCCCCTCCCTTGGTATCAGAACGTACCGCTCTCTTTGGCACTTAGTCCAAGAATAATTTCAGAGGTAGCTCGGTTCAAGCCTGACATAATACATGCATCATCACCAGGCATAATGGTTTTTGGTGCTCTTATCATTGCAAAACTTTTGTCTGTTCCAATTGTCATGTCCTATCATACCCATGTACCAGTAGCAGCTGACCTGACTCTGGTGCCATCTGTTGCCATTGGGAGGGATCTTCAAGCGGCTAGAGTAACAGCAGCTAACAAGATTCGTCTTTGGAACAAAGGTGTTGATTCTGAAAGTTTCCATCCACGATTCCGTTCACACGAAATGCGATTAAGACTAAGCAACGGTGAACCTGAGAAACCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAAAAGAGTTTAGGTTTTATCAAAGGGGTCATGGATAAGCTTCCTGAAGCTCGAGTTGCTTTCATCGGAGATGGACCGTACAGGGAGGAGCTAGAGAAAATGTTTGAAGGTATGCCTGCAGTATTCACAGGAATGTTAGGAGGGGAAGTACTCTCTCAAGCATATGCTAGTGGAGATGTATTTATCATGCCTTCAGAGTCAGAAACACTTGGCTTCGTTGTTTTGGAGGCCATGTCTTCGGGGATACCTGTGGTGGCAGCACGCGCCGGAGGCATTCCAGATATTATTCCTGCAGATCAAGAAGGTAAAACAGGTTATCTCTATAATCCAGGGGATCTTGAAGACTGCTTGAGTAAATTGAAACCCCTTTTGTTCGACAAAGAGTTGAGAGAAACCATAGGAAAAGCTGCACGTAATGAAATGGAAAAATTTGATTGGAAGGCAGCCACACGAAAGGTTCGAAATGAACAATACAATGCTGCCATCTGGTTCTGGCGCAAGAAAAGGGCGATATTATTGAGACCCTTACAATGGATCAGTAAACGTGTTTTCCCATCACCACAAGTTAACTATAGATGA

Protein sequence

>Msa1107950

MNMNATSLSINLSTSSSYPSIVSLRFQRFSPLQAKPINISCRKPRLCSFQASKTVNCRKSFVLEATNMDKAEVDSHDEEEDKEEGTSSSSTENERNSRPRRIALFVEPSPFAYVSGYKNRFQNFIKCLREMGDEVMVVTTHKGVPQEFYGAKLIGSWSFPLPWYQNVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLSVPIVMSYHTHVPVAADLTLVPSVAIGRDLQAARVTAANKIRLWNKGVDSESFHPRFRSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLGFIKGVMDKLPEARVAFIGDGPYREELEKMFEGMPAVFTGMLGGEVLSQAYASGDVFIMPSESETLGFVVLEAMSSGIPVVAARAGGIPDIIPADQEGKTGYLYNPGDLEDCLSKLKPLLFDKELRETIGKAARNEMEKFDWKAATRKVRNEQYNAAIWFWRKKRAILLRPLQWISKRVFPSPQVNYR*