AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0067060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0067060 MtrunA17_Chr1g0170551 99.522 837 4 0 1 837 505 1341 0.0 1707
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0067060 AT1G50240.3 62.246 837 296 9 1 835 501 1319 0.0 999
Msa0067060 AT1G50240.2 62.246 837 296 9 1 835 501 1319 0.0 999

Find 185 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTAAAGGTGCTTCTATTT+TGG 0.153678 1_2:+31590203 Msa0067060:CDS
TGTGGCCTTTCTTGCTAAAA+TGG 0.185979 1_2:+31589370 Msa0067060:CDS
TGAAATGTTCATATGTAATA+TGG 0.194839 1_2:+31592643 Msa0067060:three_prime_UTR
TCACCTTTGTTCCCTGTAAT+TGG 0.195043 1_2:+31592448 Msa0067060:CDS
ACACGAATATTTCTTGAAAT+TGG 0.197660 1_2:-31592667 None:intergenic
AATGATCACGGATGCATATT+TGG 0.214678 1_2:-31592503 None:intergenic
TGTAGAAGTTCGAGGAATTA+AGG 0.231455 1_2:-31588259 None:intergenic
CTTAGATCATCTCAAATTTC+AGG 0.233752 1_2:+31587114 Msa0067060:CDS
TTTGCAGAGGACAGAAATTA+TGG 0.243829 1_2:+31587380 Msa0067060:CDS
AAGAACCTTCTCATCCTATT+TGG 0.247295 1_2:-31589443 None:intergenic
ACTTGTGAGTAAAGGTCTTT+TGG 0.265655 1_2:+31589418 Msa0067060:CDS
AACTTCCTTGTTCGTTTGTC+TGG 0.274220 1_2:-31590720 None:intergenic
GGTATACCTCTTCTTCTTAT+CGG 0.280612 1_2:+31588450 Msa0067060:CDS
AGTCGAGCAAGCTGCTTCTT+TGG 0.281448 1_2:-31588087 None:intergenic
CCTGAGAACCAAAGCTGTTC+AGG 0.294699 1_2:+31587470 Msa0067060:CDS
TGCTGAAGCCTTCCAATTAC+AGG 0.306404 1_2:-31592460 None:intergenic
TCATATGGAGTTGAACGATT+TGG 0.314645 1_2:+31589340 Msa0067060:CDS
TGCCAATGCTTAGCAACTTC+AGG 0.322031 1_2:+31587210 Msa0067060:CDS
TGCACTGATGGGAAACAAAA+TGG 0.324667 1_2:-31587343 None:intergenic
TCTCTTATCCCTAGCCAATA+TGG 0.326921 1_2:-31588354 None:intergenic
CCTGAACAGCTTTGGTTCTC+AGG 0.331036 1_2:-31587470 None:intergenic
CATATGGAGTTGAACGATTT+GGG 0.333797 1_2:+31589341 Msa0067060:CDS
CCTTCGTTGCCTAGATCATA+TGG 0.338899 1_2:+31589325 Msa0067060:CDS
ATTTGTTAATATATAATTGC+AGG 0.348869 1_2:+31587002 Msa0067060:five_prime_UTR
TGGTCCTCCCCACTTGAGTT+TGG 0.351863 1_2:-31588400 None:intergenic
GGATTCTATGAGTACATTAA+AGG 0.357523 1_2:+31590189 Msa0067060:CDS
TGCAACGATTTGTGGTCTTC+AGG 0.367033 1_2:+31587530 Msa0067060:CDS
ATAATCCAATTCTATTGTTT+AGG 0.368850 1_2:-31588518 None:intergenic
GAGGAGGTCAATTCCTCATT+TGG 0.370247 1_2:+31591077 Msa0067060:CDS
TGCAACAAATTTGCCAAATG+AGG 0.376558 1_2:-31591090 None:intergenic
TCAGGCTCAAGTCTTATTGC+CGG 0.389106 1_2:+31587228 Msa0067060:CDS
ATTGAGTCTGCAACGATTTG+TGG 0.389891 1_2:+31587522 Msa0067060:CDS
GCACAACATTTGAAGTCAAC+TGG 0.393819 1_2:+31588030 Msa0067060:CDS
TATTTGGCAATGGATGATTC+TGG 0.396737 1_2:-31592487 None:intergenic
GGCTCTCCCTCCACCAGGTC+CGG 0.399922 1_2:-31588694 None:intergenic
TCATTATGTCACTGTCTCTC+TGG 0.402817 1_2:+31588570 Msa0067060:CDS
CGTTCAACTCCATATGATCT+AGG 0.403468 1_2:-31589334 None:intergenic
AATTTACATTTAGTGTTACT+TGG 0.404146 1_2:-31587955 None:intergenic
CTGAAGCATGCAGAGCTGCC+TGG 0.405894 1_2:+31587277 Msa0067060:CDS
ATAGATCATGCGAAAACATC+TGG 0.408522 1_2:+31587171 Msa0067060:CDS
GCAAAAGCTTGCAGTGCTCT+TGG 0.411003 1_2:+31590270 Msa0067060:CDS
TTAATGGGAAGCTTCCATAT+TGG 0.413282 1_2:+31588340 Msa0067060:CDS
GCATTGGCTGATGGCAAGCC+AGG 0.413838 1_2:-31588786 None:intergenic
GGCATAGCAATTTCAGATAT+CGG 0.413950 1_2:-31588237 None:intergenic
TTGTTCCAGCCGTCCTTTGT+GGG 0.414338 1_2:+31587806 Msa0067060:CDS
TTATCGGCTTGTTAAGCAAT+GGG 0.414366 1_2:+31588466 Msa0067060:CDS
AAGCTGCTTCTTTGGTGAGT+TGG 0.415057 1_2:-31588079 None:intergenic
TACAGCAACCTGAACAGCTT+TGG 0.417670 1_2:-31587478 None:intergenic
AGTAGTCACAGGAAGGGAAC+TGG 0.419497 1_2:-31587833 None:intergenic
TGCGAAAACATCTGGTTTAG+TGG 0.424218 1_2:+31587179 Msa0067060:CDS
CCTGTGACTACTGTTGTTAG+TGG 0.424629 1_2:+31587844 Msa0067060:CDS
GTAGAAGTTCGAGGAATTAA+GGG 0.424889 1_2:-31588258 None:intergenic
CTTCTTAACGTCGGTTCCCC+TGG 0.425639 1_2:+31588828 Msa0067060:CDS
CTCACAAGTTGGACTGCTAA+AGG 0.426724 1_2:-31589404 None:intergenic
CCGTAGCATATTTGAAGAAC+CGG 0.426834 1_2:-31587247 None:intergenic
TTTGGCAAATTTGTTGCAAA+TGG 0.430586 1_2:+31591095 Msa0067060:CDS
TAGTGCTGATACCGCATAAT+CGG 0.432528 1_2:-31592320 None:intergenic
TGTGTCTAAAGGAGCCGTTC+AGG 0.433946 1_2:+31591200 Msa0067060:CDS
CACAACTGCTGAACAGCTAA+TGG 0.436992 1_2:-31588420 None:intergenic
TTCGTTGAATCATTTCTGCT+TGG 0.438167 1_2:-31592346 None:intergenic
TTCCCTCGAACATGGGACTT+TGG 0.441242 1_2:+31588206 Msa0067060:CDS
ATCAGGAAAAGAAAATGAAC+TGG 0.445146 1_2:+31588305 Msa0067060:CDS
TTGCTAAGCATTGGCACAAA+TGG 0.445736 1_2:-31587203 None:intergenic
GAGTGCCTAAACAATAGAAT+TGG 0.446221 1_2:+31588513 Msa0067060:CDS
ACTTCGATAAATGATGCATC+TGG 0.447629 1_2:+31587030 Msa0067060:five_prime_UTR
AGAAGGTTCTTTGACCTGTC+AGG 0.453198 1_2:+31589455 Msa0067060:CDS
ATTGTTCCAGCCGTCCTTTG+TGG 0.455508 1_2:+31587805 Msa0067060:CDS
GAAATGTTCATATGTAATAT+GGG 0.457642 1_2:+31592644 Msa0067060:three_prime_UTR
AATTTCTGATCTTGCTCGTA+TGG 0.459630 1_2:+31589511 Msa0067060:CDS
TCCGTTCTTTCCCTCGAACA+TGG 0.460747 1_2:+31588198 Msa0067060:CDS
TGCACCTGCTGCATTTGCCT+TGG 0.461353 1_2:-31591133 None:intergenic
AGCAGGTGCACTTAGCAATC+TGG 0.464541 1_2:+31591146 Msa0067060:CDS
ATGACTCTGCAATGCACTGA+TGG 0.471107 1_2:-31587355 None:intergenic
CTGGTCCTTGATTAATGCTC+TGG 0.475747 1_2:+31587296 Msa0067060:CDS
CTTATCGGCTTGTTAAGCAA+TGG 0.479171 1_2:+31588465 Msa0067060:CDS
CTTTGTTCCCTGTAATTGGA+AGG 0.480960 1_2:+31592452 Msa0067060:CDS
AGCTTCCCATTAAAATTACC+AGG 0.484672 1_2:-31588330 None:intergenic
CCGTTCTTTCCCTCGAACAT+GGG 0.484749 1_2:+31588199 Msa0067060:CDS
TGTGAAGACATTGTGTCTAA+AGG 0.484763 1_2:+31591189 Msa0067060:CDS
CGGTTCTTCAAATATGCTAC+GGG 0.486740 1_2:+31587248 Msa0067060:CDS
GCCAATGCTTCTGTCAGCAG+TGG 0.490691 1_2:+31588801 Msa0067060:CDS
CATAATCGGAAATTAACTTC+AGG 0.492042 1_2:-31592306 None:intergenic
GGACCTGGTGGAGGGAGAGC+CGG 0.492212 1_2:+31588696 Msa0067060:CDS
CCGGTTCTTCAAATATGCTA+CGG 0.493159 1_2:+31587247 Msa0067060:CDS
AGAATTGGATTATCTCCTAT+AGG 0.494054 1_2:+31588528 Msa0067060:CDS
GCAGTCCAACTTGTGAGTAA+AGG 0.496187 1_2:+31589410 Msa0067060:CDS
ATGAGCATCACATATTAAGT+TGG 0.496644 1_2:-31588649 None:intergenic
ATTGTCCACACAACACCTAT+AGG 0.507080 1_2:-31588543 None:intergenic
TGGCTGATGCACTTTGAAGT+TGG 0.507340 1_2:-31588161 None:intergenic
TGCACTTTGAAGTTGGAAAG+AGG 0.507474 1_2:-31588154 None:intergenic
GGAAGCCCACAAAGGACGGC+TGG 0.509166 1_2:-31587811 None:intergenic
AGCCTGAAGTTGCTAAGCAT+TGG 0.511310 1_2:-31587212 None:intergenic
TGGAGTTGAACGATTTGGGC+AGG 0.513565 1_2:+31589345 Msa0067060:CDS
AACTGGACCGGACCTGGTGG+AGG 0.513693 1_2:+31588687 Msa0067060:CDS
AGGACTAAAAGAGGTTATGC+TGG 0.514389 1_2:+31589475 Msa0067060:CDS
CCCACTGCTGACAGAAGCAT+TGG 0.514870 1_2:-31588802 None:intergenic
AAAGACCTTTACTCACAAGT+TGG 0.516206 1_2:-31589415 None:intergenic
GGAAGACAAGGATACAGTTA+AGG 0.517248 1_2:+31588866 Msa0067060:CDS
TGTTGATTCTTCGTCAAACA+AGG 0.519440 1_2:-31587418 None:intergenic
GTTGCTCTTCAAAATGCACC+TGG 0.521319 1_2:+31588768 Msa0067060:CDS
TGACCTGTCAGGACTAAAAG+AGG 0.521606 1_2:+31589466 Msa0067060:CDS
AAGACCAAGGCAAATGCAGC+AGG 0.524310 1_2:+31591129 Msa0067060:CDS
GTTGTTAGTGGTGGCGGTGA+TGG 0.525699 1_2:+31587856 Msa0067060:CDS
ATTTATTAGATCTCTAACTC+CGG 0.531655 1_2:-31588715 None:intergenic
GGGATAAGAGATGGGTGTGT+TGG 0.532813 1_2:+31588366 Msa0067060:CDS
CCAATGCTTCTGTCAGCAGT+GGG 0.533858 1_2:+31588802 Msa0067060:CDS
TATTGGCTAGGGATAAGAGA+TGG 0.535958 1_2:+31588357 Msa0067060:CDS
CAGGCAAGATATCAAATCGT+TGG 0.537394 1_2:+31590672 Msa0067060:intron
GAACGATTTGGGCAGGCCTG+TGG 0.538122 1_2:+31589352 Msa0067060:CDS
TGGATCCAAATAGGATGAGA+AGG 0.538241 1_2:+31589438 Msa0067060:CDS
AAATTTGTTGCAAATGGCAG+AGG 0.539743 1_2:+31591101 Msa0067060:CDS
GAAAAGAGAGCGATCTTCAA+AGG 0.540820 1_2:-31592376 None:intergenic
TTTAGATTCCAAACTCAAGT+GGG 0.542368 1_2:+31588392 Msa0067060:CDS
TGACTCTGCAATGCACTGAT+GGG 0.544024 1_2:-31587354 None:intergenic
ACTGGGAAGCCCACAAAGGA+CGG 0.544473 1_2:-31587815 None:intergenic
CCCTGGTCAGAGAGTATGCA+TGG 0.545199 1_2:+31588845 Msa0067060:CDS
TCAAAGTGCATCAGCCATGT+TGG 0.546812 1_2:+31588167 Msa0067060:CDS
TCCATGCATACTCTCTGACC+AGG 0.547793 1_2:-31588846 None:intergenic
GGGAAGCTTCCATATTGGCT+AGG 0.548567 1_2:+31588345 Msa0067060:CDS
AGCAACTTTGCTAATGATCA+CGG 0.552850 1_2:-31592515 None:intergenic
ACTCCGGCTCTCCCTCCACC+AGG 0.557788 1_2:-31588699 None:intergenic
TGATCTTGCTCGTATGGACA+AGG 0.562207 1_2:+31589517 Msa0067060:CDS
GAATGACGAATCAGAGCAGA+AGG 0.567913 1_2:-31587985 None:intergenic
TTTGTTGCAAATGGCAGAGG+AGG 0.572517 1_2:+31591104 Msa0067060:CDS
CTGACAGAAGCATTGGCTGA+TGG 0.573075 1_2:-31588795 None:intergenic
CAGAGCATTAATCAAGGACC+AGG 0.574660 1_2:-31587295 None:intergenic
GGAAGCTTCCATATTGGCTA+GGG 0.574852 1_2:+31588346 Msa0067060:CDS
AGACAACATGACTGTAACAC+AGG 0.581096 1_2:-31587076 None:intergenic
GAAGTTAATTTCCGATTATG+CGG 0.581184 1_2:+31592309 Msa0067060:CDS
CCCATGTTCGAGGGAAAGAA+CGG 0.583137 1_2:-31588199 None:intergenic
ACTACTGTTGTTAGTGGTGG+CGG 0.583153 1_2:+31587850 Msa0067060:CDS
CACGGATGCATATTTGGCAA+TGG 0.583174 1_2:-31592497 None:intergenic
CTGATCCAGACAAACGAACA+AGG 0.585770 1_2:+31590715 Msa0067060:CDS
AACAAGCCGATAAGAAGAAG+AGG 0.586596 1_2:-31588456 None:intergenic
GTAGTCACAGGAAGGGAACT+GGG 0.587181 1_2:-31587832 None:intergenic
AACCAAAGTCCCATGTTCGA+GGG 0.589127 1_2:-31588208 None:intergenic
AACGTCCAGAGCATTAATCA+AGG 0.593158 1_2:-31587301 None:intergenic
GAGAGTATGCATGGAAGACA+AGG 0.594467 1_2:+31588854 Msa0067060:CDS
TCACTTAGTGTAGAAGTTCG+AGG 0.596140 1_2:-31588267 None:intergenic
GTTCAGCAGTTGTGTGCTAG+TGG 0.598687 1_2:+31588429 Msa0067060:CDS
CAACCAAAGTCCCATGTTCG+AGG 0.599034 1_2:-31588209 None:intergenic
AGTGGGTTTCTTCTTAACGT+CGG 0.601772 1_2:+31588819 Msa0067060:CDS
AGGCAACGAAGGATAATGCT+AGG 0.604297 1_2:-31589314 None:intergenic
ATGCGCACACATCTTTGCTA+AGG 0.606655 1_2:-31592398 None:intergenic
TATCTCCTATAGGTGTTGTG+TGG 0.607598 1_2:+31588538 Msa0067060:CDS
CCACTAACAACAGTAGTCAC+AGG 0.608024 1_2:-31587844 None:intergenic
ATTGGCTAGGGATAAGAGAT+GGG 0.609388 1_2:+31588358 Msa0067060:CDS
AACGGATGACAAAGCCAACA+TGG 0.609951 1_2:-31588181 None:intergenic
AATGAACAGAATGACTTCAG+TGG 0.611620 1_2:-31592570 None:intergenic
CTGAATTCAGATTGGAAATG+CGG 0.611790 1_2:+31591023 Msa0067060:intron
GTGACTACTGTTGTTAGTGG+TGG 0.616441 1_2:+31587847 Msa0067060:CDS
GTTGATTCTTCGTCAAACAA+GGG 0.618024 1_2:-31587417 None:intergenic
TTCCTGATGAAAATTTAAGG+TGG 0.618322 1_2:-31588290 None:intergenic
TTATGTCACTGTCTCTCTGG+TGG 0.619919 1_2:+31588573 Msa0067060:CDS
TAACAACAGTAGTCACAGGA+AGG 0.621796 1_2:-31587840 None:intergenic
CCATGCATACTCTCTGACCA+GGG 0.623417 1_2:-31588845 None:intergenic
CAAATACATTAAGATCCTTG+TGG 0.629186 1_2:+31588908 Msa0067060:CDS
TTAGATTCCAAACTCAAGTG+GGG 0.632553 1_2:+31588393 Msa0067060:CDS
CTGGAACAATTCCACTGTGG+AGG 0.633788 1_2:-31587792 None:intergenic
GTTGGACTGCTAAAGGTCGT+TGG 0.635545 1_2:-31589397 None:intergenic
AAAGAAAATGAACTGGACCC+TGG 0.635654 1_2:+31588312 Msa0067060:CDS
TAAGGCAATAGAAGAAGACA+TGG 0.637683 1_2:+31588884 Msa0067060:CDS
CTTCCAATTACAGGGAACAA+AGG 0.638928 1_2:-31592451 None:intergenic
ACTGGACCGGACCTGGTGGA+GGG 0.639216 1_2:+31588688 Msa0067060:CDS
GCTGAAGCCTTCCAATTACA+GGG 0.640521 1_2:-31592459 None:intergenic
GATTCCAAACTCAAGTGGGG+AGG 0.640990 1_2:+31588396 Msa0067060:CDS
GTGTGCATCTTTGTTGAGAG+AGG 0.641749 1_2:-31587923 None:intergenic
GGCAGAGGAGGACAAGACCA+AGG 0.644968 1_2:+31591116 Msa0067060:CDS
CAGGGAACAAAGGTGATGAA+CGG 0.645731 1_2:-31592441 None:intergenic
GCAGCGAGCACGTACCTGAA+CGG 0.647919 1_2:-31591214 None:intergenic
AGTTCACATACACTTATGTG+CGG 0.653705 1_2:-31592621 None:intergenic
AACAACAGTAGTCACAGGAA+GGG 0.659116 1_2:-31587839 None:intergenic
ATACATTAAGATCCTTGTGG+AGG 0.670626 1_2:+31588911 Msa0067060:CDS
CCATATGATCTAGGCAACGA+AGG 0.691175 1_2:-31589325 None:intergenic
TCAAGGTGCTGCCTCCACAG+TGG 0.694682 1_2:+31587781 Msa0067060:CDS
GCTTCCCATTAAAATTACCA+GGG 0.695021 1_2:-31588329 None:intergenic
CGGATGAACTGTCTGCAGAG+TGG 0.699228 1_2:-31592421 None:intergenic
GGGAACTGGGAAGCCCACAA+AGG 0.700170 1_2:-31587819 None:intergenic
TGTTGTATGAAGAACTGAGG+AGG 0.703175 1_2:+31591061 Msa0067060:CDS
CATGCATACTCTCTGACCAG+GGG 0.709420 1_2:-31588844 None:intergenic
AGTGGAAGTCAATCAAACAG+TGG 0.710765 1_2:-31592552 None:intergenic
AAGGCAATAGAAGAAGACAT+GGG 0.711324 1_2:+31588885 Msa0067060:CDS
TCGTTGCAGACTCAATACGT+TGG 0.746225 1_2:-31587515 None:intergenic
ACGTGTTGTATGAAGAACTG+AGG 0.767482 1_2:+31591058 Msa0067060:CDS
CGGCTGGAACAATTCCACTG+TGG 0.772890 1_2:-31587795 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATCAAAAATAACTTTAA+AGG + chr1_2:31589876-31589895 Msa0067060:intron 10.0%
!!! ATTTATTATTTTTTTTTGAC+TGG + chr1_2:31592772-31592791 Msa0067060:three_prime_UTR 10.0%
!!! ATTTGTTAATATATAATTGC+AGG + chr1_2:31587002-31587021 Msa0067060:five_prime_UTR 15.0%
!!! AAATTTTATATTTGATACAG+CGG + chr1_2:31589191-31589210 Msa0067060:intron 15.0%
!!! AAAGTAATAATCATTTTTCA+AGG - chr1_2:31590151-31590170 None:intergenic 15.0%
!!! TTTTATAATATTTCTTACGT+TGG + chr1_2:31590401-31590420 Msa0067060:intron 15.0%
!!! TTAAACTTATTTTTCTTTTG+AGG - chr1_2:31590512-31590531 None:intergenic 15.0%
!!! CTAACTAAATTTATTGATTA+GGG - chr1_2:31591343-31591362 None:intergenic 15.0%
!!! TCTAACTAAATTTATTGATT+AGG - chr1_2:31591344-31591363 None:intergenic 15.0%
!!! GAATTCAAAAATTTAAAATG+AGG - chr1_2:31591573-31591592 None:intergenic 15.0%
!! CTTAAAATTAAAATGTGATA+TGG - chr1_2:31591595-31591614 None:intergenic 15.0%
!!! TATTTTATTATAGGTTAGAA+TGG - chr1_2:31591637-31591656 None:intergenic 15.0%
!! ACAGTTAGTTAAAATATAAT+TGG + chr1_2:31591792-31591811 Msa0067060:intron 15.0%
!!! GAAAGTTGCATTTTTTAAAT+TGG + chr1_2:31587598-31587617 Msa0067060:intron 20.0%
!!! AATTTACATTTAGTGTTACT+TGG - chr1_2:31587958-31587977 None:intergenic 20.0%
!! ATAATCCAATTCTATTGTTT+AGG - chr1_2:31588521-31588540 None:intergenic 20.0%
!!! ATCTTAAGTTGATAAAAAAC+TGG + chr1_2:31588670-31588689 Msa0067060:CDS 20.0%
!! ATTCCAAATAAATTACCAAA+GGG - chr1_2:31588955-31588974 None:intergenic 20.0%
!! TATTCCAAATAAATTACCAA+AGG - chr1_2:31588956-31588975 None:intergenic 20.0%
!!! TTTATTTGGAATATTGAAAG+TGG + chr1_2:31588963-31588982 Msa0067060:intron 20.0%
!! ACATGTCATATACTAATAAT+TGG - chr1_2:31589118-31589137 None:intergenic 20.0%
!!! TGTGATGACAATTTTATTTT+TGG + chr1_2:31589135-31589154 Msa0067060:intron 20.0%
!! CAAAGCAATTATTAAAAACA+TGG - chr1_2:31589275-31589294 None:intergenic 20.0%
!! AAACTGAATAGAAATGATAA+AGG - chr1_2:31589601-31589620 None:intergenic 20.0%
!! AAAAATGAAACTTAACGAAA+GGG - chr1_2:31589696-31589715 None:intergenic 20.0%
!! AAAAAATGAAACTTAACGAA+AGG - chr1_2:31589697-31589716 None:intergenic 20.0%
!!! AAATATTTTCCTATTGTTTC+TGG + chr1_2:31590042-31590061 Msa0067060:intron 20.0%
!!! TAGAAAACTTTTATATGTCT+AGG - chr1_2:31590464-31590483 None:intergenic 20.0%
!!! TTATTTTTCTTTTGAGGTAA+CGG - chr1_2:31590506-31590525 None:intergenic 20.0%
!! GAATTCTCTTATAATACAAT+TGG + chr1_2:31590643-31590662 Msa0067060:intron 20.0%
!! TATAATACAGCATAAATCTT+TGG - chr1_2:31590785-31590804 None:intergenic 20.0%
!! CTGTATTATAGAATATGTTT+AGG + chr1_2:31590795-31590814 Msa0067060:intron 20.0%
!! TAACTAAATGTTTATCAACT+GGG - chr1_2:31591978-31591997 None:intergenic 20.0%
!! TTAACTAAATGTTTATCAAC+TGG - chr1_2:31591979-31591998 None:intergenic 20.0%
!! ACAATTATAATTAGATAGAC+AGG + chr1_2:31592070-31592089 Msa0067060:intron 20.0%
!! TGAAATGTTCATATGTAATA+TGG + chr1_2:31592643-31592662 Msa0067060:three_prime_UTR 20.0%
!! GAAATGTTCATATGTAATAT+GGG + chr1_2:31592644-31592663 Msa0067060:three_prime_UTR 20.0%
!! ACTTATTGTTATTGATGCAA+TGG + chr1_2:31587680-31587699 Msa0067060:intron 25.0%
! AATGGTTAAAGTTTCAGATA+TGG + chr1_2:31587698-31587717 Msa0067060:intron 25.0%
!! CTTTTCCTGATGAAAATTTA+AGG - chr1_2:31588296-31588315 None:intergenic 25.0%
!!! TTTTTCGTCAGATTTTGATT+AGG + chr1_2:31588604-31588623 Msa0067060:CDS 25.0%
! ATTTATTAGATCTCTAACTC+CGG - chr1_2:31588718-31588737 None:intergenic 25.0%
! TTCCAAATAAATTACCAAAG+GGG - chr1_2:31588954-31588973 None:intergenic 25.0%
! AAACAAATATCGTTCTTTCA+TGG + chr1_2:31588990-31589009 Msa0067060:intron 25.0%
! AACAAATATCGTTCTTTCAT+GGG + chr1_2:31588991-31589010 Msa0067060:intron 25.0%
! GAAAGTAAAAGATTTATAGC+AGG - chr1_2:31589217-31589236 None:intergenic 25.0%
!! ATAATTGCTTTGATGTTTTC+AGG + chr1_2:31589283-31589302 Msa0067060:intron 25.0%
! ATTCATAAAACGAAACCATT+TGG - chr1_2:31589560-31589579 None:intergenic 25.0%
! TCTATTCAGTTTAGTGATAA+AGG + chr1_2:31589609-31589628 Msa0067060:intron 25.0%
! CTATTCAGTTTAGTGATAAA+GGG + chr1_2:31589610-31589629 Msa0067060:intron 25.0%
! TCTCTACAATAAATAGTTTG+AGG - chr1_2:31589795-31589814 None:intergenic 25.0%
! TTTATTGTAGAGAGAGAAAT+AGG + chr1_2:31589802-31589821 Msa0067060:intron 25.0%
! ATATTTAGAGAATCCTCATT+TGG + chr1_2:31589962-31589981 Msa0067060:intron 25.0%
! TATTTAGAGAATCCTCATTT+GGG + chr1_2:31589963-31589982 Msa0067060:intron 25.0%
! CAAAATATGATAACTGCAAA+AGG - chr1_2:31590624-31590643 None:intergenic 25.0%
! ATAATACAATTGGAATTTGC+AGG + chr1_2:31590653-31590672 Msa0067060:intron 25.0%
!! ACTAAATTTATTGATTAGGG+AGG - chr1_2:31591340-31591359 None:intergenic 25.0%
! AATGTACAGAAAATGGAATT+TGG + chr1_2:31591872-31591891 Msa0067060:intron 25.0%
!! GTTTGAAGGTATAATAAACA+TGG - chr1_2:31591948-31591967 None:intergenic 25.0%
! TCAATTACAGTATAACTTTG+TGG + chr1_2:31592223-31592242 Msa0067060:intron 25.0%
! AAATTGCTTGAAAAAATAGC+TGG - chr1_2:31592263-31592282 None:intergenic 25.0%
! ACACGAATATTTCTTGAAAT+TGG - chr1_2:31592670-31592689 None:intergenic 25.0%
CTTAGATCATCTCAAATTTC+AGG + chr1_2:31587114-31587133 Msa0067060:CDS 30.0%
TGACGAAGAATCAACAAAAA+TGG + chr1_2:31587425-31587444 Msa0067060:CDS 30.0%
TTCCTGATGAAAATTTAAGG+TGG - chr1_2:31588293-31588312 None:intergenic 30.0%
ATCAGGAAAAGAAAATGAAC+TGG + chr1_2:31588305-31588324 Msa0067060:CDS 30.0%
! TTTTAGATTCCAAACTCAAG+TGG + chr1_2:31588391-31588410 Msa0067060:CDS 30.0%
TTTAGATTCCAAACTCAAGT+GGG + chr1_2:31588392-31588411 Msa0067060:CDS 30.0%
AGAATTGGATTATCTCCTAT+AGG + chr1_2:31588528-31588547 Msa0067060:CDS 30.0%
ATGAGCATCACATATTAAGT+TGG - chr1_2:31588652-31588671 None:intergenic 30.0%
!! AAGTTGATAAAAAACTGGAC+CGG + chr1_2:31588675-31588694 Msa0067060:CDS 30.0%
CAAATACATTAAGATCCTTG+TGG + chr1_2:31588908-31588927 Msa0067060:CDS 30.0%
! ATCCCCTTTGGTAATTTATT+TGG + chr1_2:31588949-31588968 Msa0067060:intron 30.0%
!! CATCGTTTTGAATAACTAAC+TGG + chr1_2:31589994-31590013 Msa0067060:intron 30.0%
! TGGTCTAAAATAACTCAAAC+TGG - chr1_2:31590080-31590099 None:intergenic 30.0%
TACACGTGAAACAATTATAC+TGG - chr1_2:31590100-31590119 None:intergenic 30.0%
!!! CATTTTTCAAGGAATGACTA+TGG - chr1_2:31590140-31590159 None:intergenic 30.0%
GGATTCTATGAGTACATTAA+AGG + chr1_2:31590189-31590208 Msa0067060:CDS 30.0%
!!! CATTAAAGGTGCTTCTATTT+TGG + chr1_2:31590203-31590222 Msa0067060:CDS 30.0%
CACAAGAGAACTGTAAAAAT+AGG - chr1_2:31590316-31590335 None:intergenic 30.0%
GTTTGATCAAAGCAAATATG+TGG + chr1_2:31590372-31590391 Msa0067060:intron 30.0%
GGATTTAAACACATTGTGAT+GGG - chr1_2:31590443-31590462 None:intergenic 30.0%
AGGATTTAAACACATTGTGA+TGG - chr1_2:31590444-31590463 None:intergenic 30.0%
TAGAATATGTTTAGGCTTGT+TGG + chr1_2:31590803-31590822 Msa0067060:intron 30.0%
!!! CATCAGTTTTAAAAACAGGA+AGG - chr1_2:31590929-31590948 None:intergenic 30.0%
!!! ATGGCATCAGTTTTAAAAAC+AGG - chr1_2:31590933-31590952 None:intergenic 30.0%
!! TTTGGCAAATTTGTTGCAAA+TGG + chr1_2:31591095-31591114 Msa0067060:CDS 30.0%
! GTTTGTTGGACATAATAACA+TGG + chr1_2:31591730-31591749 Msa0067060:intron 30.0%
ATGTAGGAATGTACAGAAAA+TGG + chr1_2:31591865-31591884 Msa0067060:intron 30.0%
! ATTCTATCTTGTTTCTCTTG+AGG + chr1_2:31592137-31592156 Msa0067060:intron 30.0%
! CTTGAGGATTTAAGATGATT+AGG + chr1_2:31592153-31592172 Msa0067060:intron 30.0%
CATAATCGGAAATTAACTTC+AGG - chr1_2:31592309-31592328 None:intergenic 30.0%
GAAGTTAATTTCCGATTATG+CGG + chr1_2:31592309-31592328 Msa0067060:CDS 30.0%
AAGTCATTCTGTTCATTCTT+AGG + chr1_2:31592576-31592595 Msa0067060:intron 30.0%
ACTTCGATAAATGATGCATC+TGG + chr1_2:31587030-31587049 Msa0067060:five_prime_UTR 35.0%
ATAGATCATGCGAAAACATC+TGG + chr1_2:31587171-31587190 Msa0067060:CDS 35.0%
TTTGCAGAGGACAGAAATTA+TGG + chr1_2:31587380-31587399 Msa0067060:CDS 35.0%
! GTTGATTCTTCGTCAAACAA+GGG - chr1_2:31587420-31587439 None:intergenic 35.0%
!! TGTTGATTCTTCGTCAAACA+AGG - chr1_2:31587421-31587440 None:intergenic 35.0%
AACAGGACTACCTAAAACAA+GGG - chr1_2:31587572-31587591 None:intergenic 35.0%
TAACAGGACTACCTAAAACA+AGG - chr1_2:31587573-31587592 None:intergenic 35.0%
ATGCAACTTTCTGTCATAAC+AGG - chr1_2:31587589-31587608 None:intergenic 35.0%
CTGAAAAGGCAAAAGAATGA+CGG - chr1_2:31587755-31587774 None:intergenic 35.0%
GGCATAGCAATTTCAGATAT+CGG - chr1_2:31588240-31588259 None:intergenic 35.0%
GTAGAAGTTCGAGGAATTAA+GGG - chr1_2:31588261-31588280 None:intergenic 35.0%
TGTAGAAGTTCGAGGAATTA+AGG - chr1_2:31588262-31588281 None:intergenic 35.0%
! GACCACCTTAAATTTTCATC+AGG + chr1_2:31588288-31588307 Msa0067060:CDS 35.0%
!! TGGACCCTGGTAATTTTAAT+GGG + chr1_2:31588325-31588344 Msa0067060:CDS 35.0%
GCTTCCCATTAAAATTACCA+GGG - chr1_2:31588332-31588351 None:intergenic 35.0%
AGCTTCCCATTAAAATTACC+AGG - chr1_2:31588333-31588352 None:intergenic 35.0%
TTAATGGGAAGCTTCCATAT+TGG + chr1_2:31588340-31588359 Msa0067060:CDS 35.0%
TTAGATTCCAAACTCAAGTG+GGG + chr1_2:31588393-31588412 Msa0067060:CDS 35.0%
GGTATACCTCTTCTTCTTAT+CGG + chr1_2:31588450-31588469 Msa0067060:CDS 35.0%
!! TTATCGGCTTGTTAAGCAAT+GGG + chr1_2:31588466-31588485 Msa0067060:CDS 35.0%
GAGTGCCTAAACAATAGAAT+TGG + chr1_2:31588513-31588532 Msa0067060:CDS 35.0%
!! GCATTTTGAAGAGCAACAAA+AGG - chr1_2:31588765-31588784 None:intergenic 35.0%
TAAGGCAATAGAAGAAGACA+TGG + chr1_2:31588884-31588903 Msa0067060:CDS 35.0%
AAGGCAATAGAAGAAGACAT+GGG + chr1_2:31588885-31588904 Msa0067060:CDS 35.0%
ATACATTAAGATCCTTGTGG+AGG + chr1_2:31588911-31588930 Msa0067060:CDS 35.0%
! AAGATGATTTTACCTCCACA+AGG - chr1_2:31588926-31588945 None:intergenic 35.0%
AATCATCTTTCAATCCCCTT+TGG + chr1_2:31588937-31588956 Msa0067060:intron 35.0%
CAAACATTAATGACATGCAG+TGG - chr1_2:31589028-31589047 None:intergenic 35.0%
TGTTATTAAGCAGTAGCTGA+TGG + chr1_2:31589046-31589065 Msa0067060:intron 35.0%
!!! TTGCTTTGATGTTTTCAGGT+TGG + chr1_2:31589287-31589306 Msa0067060:intron 35.0%
TCATATGGAGTTGAACGATT+TGG + chr1_2:31589340-31589359 Msa0067060:CDS 35.0%
CATATGGAGTTGAACGATTT+GGG + chr1_2:31589341-31589360 Msa0067060:CDS 35.0%
AAAGACCTTTACTCACAAGT+TGG - chr1_2:31589418-31589437 None:intergenic 35.0%
! ACTTGTGAGTAAAGGTCTTT+TGG + chr1_2:31589418-31589437 Msa0067060:CDS 35.0%
! AAGGTCTTTTGGATCCAAAT+AGG + chr1_2:31589429-31589448 Msa0067060:CDS 35.0%
AAGAACCTTCTCATCCTATT+TGG - chr1_2:31589446-31589465 None:intergenic 35.0%
AATTTCTGATCTTGCTCGTA+TGG + chr1_2:31589511-31589530 Msa0067060:CDS 35.0%
!!! AGTTTTGACTCTTCACCAAA+TGG + chr1_2:31589542-31589561 Msa0067060:intron 35.0%
AGTTTAGTGATAAAGGGTTG+TGG + chr1_2:31589616-31589635 Msa0067060:intron 35.0%
GATGTAACTATACCCAAATG+AGG - chr1_2:31589978-31589997 None:intergenic 35.0%
AACTAACTGGCATTTCACAA+TGG + chr1_2:31590007-31590026 Msa0067060:intron 35.0%
ACTAACTGGCATTTCACAAT+GGG + chr1_2:31590008-31590027 Msa0067060:intron 35.0%
TTTCACGTGTATTTGCTTTC+TGG + chr1_2:31590109-31590128 Msa0067060:intron 35.0%
TGATGGGAAAAAAAGAGAGA+AGG - chr1_2:31590427-31590446 None:intergenic 35.0%
!!! GCTGTAAGTTTTAAATCCCA+TGG + chr1_2:31590753-31590772 Msa0067060:intron 35.0%
!! AAATCTTTGGCTTTAGCCAT+GGG - chr1_2:31590772-31590791 None:intergenic 35.0%
!! TAAATCTTTGGCTTTAGCCA+TGG - chr1_2:31590773-31590792 None:intergenic 35.0%
TGTTGGCATTCTTATTGTGT+TGG + chr1_2:31590820-31590839 Msa0067060:intron 35.0%
ACGAAAATGGATAAGCATGA+TGG - chr1_2:31590952-31590971 None:intergenic 35.0%
GCACATATACAGTACGAAAA+TGG - chr1_2:31590965-31590984 None:intergenic 35.0%
! TTTTCGTACTGTATATGTGC+TGG + chr1_2:31590965-31590984 Msa0067060:intron 35.0%
CTGAATTCAGATTGGAAATG+CGG + chr1_2:31591023-31591042 Msa0067060:intron 35.0%
TGCAACAAATTTGCCAAATG+AGG - chr1_2:31591093-31591112 None:intergenic 35.0%
!! AAATTTGTTGCAAATGGCAG+AGG + chr1_2:31591101-31591120 Msa0067060:CDS 35.0%
TGTGAAGACATTGTGTCTAA+AGG + chr1_2:31591189-31591208 Msa0067060:CDS 35.0%
! TTATTGATTAGGGAGGAAAG+AGG - chr1_2:31591333-31591352 None:intergenic 35.0%
AAGAAATAGCAGCTGTTTGT+TGG + chr1_2:31591716-31591735 Msa0067060:intron 35.0%
! AATCTCCTTTCTGTGGATTA+TGG + chr1_2:31591921-31591940 Msa0067060:intron 35.0%
! AACTGGGTTGAAAAGTTTGA+AGG - chr1_2:31591962-31591981 None:intergenic 35.0%
! ACCATGAAGCTTGTTTAAAG+AGG + chr1_2:31592013-31592032 Msa0067060:intron 35.0%
! CCATGAAGCTTGTTTAAAGA+GGG + chr1_2:31592014-31592033 Msa0067060:intron 35.0%
AATTAGATAGACAGGACATG+AGG + chr1_2:31592078-31592097 Msa0067060:intron 35.0%
TTCGTTGAATCATTTCTGCT+TGG - chr1_2:31592349-31592368 None:intergenic 35.0%
TATTTGGCAATGGATGATTC+TGG - chr1_2:31592490-31592509 None:intergenic 35.0%
AATGATCACGGATGCATATT+TGG - chr1_2:31592506-31592525 None:intergenic 35.0%
AGCAACTTTGCTAATGATCA+CGG - chr1_2:31592518-31592537 None:intergenic 35.0%
AATGAACAGAATGACTTCAG+TGG - chr1_2:31592573-31592592 None:intergenic 35.0%
AGTTCACATACACTTATGTG+CGG - chr1_2:31592624-31592643 None:intergenic 35.0%
AGACAACATGACTGTAACAC+AGG - chr1_2:31587079-31587098 None:intergenic 40.0%
! TGCGAAAACATCTGGTTTAG+TGG + chr1_2:31587179-31587198 Msa0067060:CDS 40.0%
!! TTGCTAAGCATTGGCACAAA+TGG - chr1_2:31587206-31587225 None:intergenic 40.0%
CCGTAGCATATTTGAAGAAC+CGG - chr1_2:31587250-31587269 None:intergenic 40.0%
CCGGTTCTTCAAATATGCTA+CGG + chr1_2:31587247-31587266 Msa0067060:CDS 40.0%
CGGTTCTTCAAATATGCTAC+GGG + chr1_2:31587248-31587267 Msa0067060:CDS 40.0%
! AACGTCCAGAGCATTAATCA+AGG - chr1_2:31587304-31587323 None:intergenic 40.0%
! TGCACTGATGGGAAACAAAA+TGG - chr1_2:31587346-31587365 None:intergenic 40.0%
!!! TGCAGAGTCATTTTTTGCAG+AGG + chr1_2:31587367-31587386 Msa0067060:CDS 40.0%
ATTGAGTCTGCAACGATTTG+TGG + chr1_2:31587522-31587541 Msa0067060:CDS 40.0%
! TTGTGGTCTTCAGGTACTTT+TGG + chr1_2:31587539-31587558 Msa0067060:intron 40.0%
! TGCCTTTTCAGCTTTTGTCA+AGG + chr1_2:31587764-31587783 Msa0067060:intron 40.0%
CACCTTGACAAAAGCTGAAA+AGG - chr1_2:31587769-31587788 None:intergenic 40.0%
AACAACAGTAGTCACAGGAA+GGG - chr1_2:31587842-31587861 None:intergenic 40.0%
TAACAACAGTAGTCACAGGA+AGG - chr1_2:31587843-31587862 None:intergenic 40.0%
! GCACAACATTTGAAGTCAAC+TGG + chr1_2:31588030-31588049 Msa0067060:CDS 40.0%
!! TGCACTTTGAAGTTGGAAAG+AGG - chr1_2:31588157-31588176 None:intergenic 40.0%
TCACTTAGTGTAGAAGTTCG+AGG - chr1_2:31588270-31588289 None:intergenic 40.0%
AAAGAAAATGAACTGGACCC+TGG + chr1_2:31588312-31588331 Msa0067060:CDS 40.0%
! CTGGACCCTGGTAATTTTAA+TGG + chr1_2:31588324-31588343 Msa0067060:CDS 40.0%
TCTCTTATCCCTAGCCAATA+TGG - chr1_2:31588357-31588376 None:intergenic 40.0%
! TATTGGCTAGGGATAAGAGA+TGG + chr1_2:31588357-31588376 Msa0067060:CDS 40.0%
ATTGGCTAGGGATAAGAGAT+GGG + chr1_2:31588358-31588377 Msa0067060:CDS 40.0%
AACAAGCCGATAAGAAGAAG+AGG - chr1_2:31588459-31588478 None:intergenic 40.0%
!! CTTATCGGCTTGTTAAGCAA+TGG + chr1_2:31588465-31588484 Msa0067060:CDS 40.0%
! TATCTCCTATAGGTGTTGTG+TGG + chr1_2:31588538-31588557 Msa0067060:CDS 40.0%
ATTGTCCACACAACACCTAT+AGG - chr1_2:31588546-31588565 None:intergenic 40.0%
TCATTATGTCACTGTCTCTC+TGG + chr1_2:31588570-31588589 Msa0067060:CDS 40.0%
! AGTGGGTTTCTTCTTAACGT+CGG + chr1_2:31588819-31588838 Msa0067060:CDS 40.0%
GGAAGACAAGGATACAGTTA+AGG + chr1_2:31588866-31588885 Msa0067060:CDS 40.0%
ATTAAGCAGTAGCTGATGGT+AGG + chr1_2:31589050-31589069 Msa0067060:intron 40.0%
CGTTCAACTCCATATGATCT+AGG - chr1_2:31589337-31589356 None:intergenic 40.0%
!! ATTTTAGCAAGAAAGGCCAC+AGG - chr1_2:31589371-31589390 None:intergenic 40.0%
TGTGGCCTTTCTTGCTAAAA+TGG + chr1_2:31589370-31589389 Msa0067060:CDS 40.0%
!! GCACACCATTTTAGCAAGAA+AGG - chr1_2:31589378-31589397 None:intergenic 40.0%
TGGATCCAAATAGGATGAGA+AGG + chr1_2:31589438-31589457 Msa0067060:CDS 40.0%
! TAACCTCTTTTAGTCCTGAC+AGG - chr1_2:31589472-31589491 None:intergenic 40.0%
AGGACTAAAAGAGGTTATGC+TGG + chr1_2:31589475-31589494 Msa0067060:CDS 40.0%
CTAACTGGCATTTCACAATG+GGG + chr1_2:31590009-31590028 Msa0067060:intron 40.0%
ATTTCACAATGGGGATGTAC+AGG + chr1_2:31590018-31590037 Msa0067060:intron 40.0%
TGCATTGTGCCAGAAACAAT+AGG - chr1_2:31590054-31590073 None:intergenic 40.0%
TTTCCGTTTCCTGTTGTTCA+GGG + chr1_2:31590168-31590187 Msa0067060:intron 40.0%
AATCCCTGAACAACAGGAAA+CGG - chr1_2:31590174-31590193 None:intergenic 40.0%
TCATAGAATCCCTGAACAAC+AGG - chr1_2:31590180-31590199 None:intergenic 40.0%
! CAAGCTTTTGCACGCATATT+TGG - chr1_2:31590261-31590280 None:intergenic 40.0%
CAGGCAAGATATCAAATCGT+TGG + chr1_2:31590672-31590691 Msa0067060:intron 40.0%
AACTTCCTTGTTCGTTTGTC+TGG - chr1_2:31590723-31590742 None:intergenic 40.0%
CCAATCTGAATTCAGATAGC+AGG - chr1_2:31591018-31591037 None:intergenic 40.0%
CCTGCTATCTGAATTCAGAT+TGG + chr1_2:31591015-31591034 Msa0067060:intron 40.0%
ACGTGTTGTATGAAGAACTG+AGG + chr1_2:31591058-31591077 Msa0067060:CDS 40.0%
TGTTGTATGAAGAACTGAGG+AGG + chr1_2:31591061-31591080 Msa0067060:CDS 40.0%
CTTCATACACTTTATGCTGC+TGG - chr1_2:31591699-31591718 None:intergenic 40.0%
TGTCATGAATCTCCTTTCTG+TGG + chr1_2:31591914-31591933 Msa0067060:intron 40.0%
ATGGACCATAATCCACAGAA+AGG - chr1_2:31591929-31591948 None:intergenic 40.0%
CCCTCTTTAAACAAGCTTCA+TGG - chr1_2:31592017-31592036 None:intergenic 40.0%
! AAGCTTGTTTAAAGAGGGCA+GGG + chr1_2:31592019-31592038 Msa0067060:intron 40.0%
!! TAGTGCTGATACCGCATAAT+CGG - chr1_2:31592323-31592342 None:intergenic 40.0%
GAAAAGAGAGCGATCTTCAA+AGG - chr1_2:31592379-31592398 None:intergenic 40.0%
TCACCTTTGTTCCCTGTAAT+TGG + chr1_2:31592448-31592467 Msa0067060:CDS 40.0%
CTTCCAATTACAGGGAACAA+AGG - chr1_2:31592454-31592473 None:intergenic 40.0%
CTTTGTTCCCTGTAATTGGA+AGG + chr1_2:31592452-31592471 Msa0067060:CDS 40.0%
AGTGGAAGTCAATCAAACAG+TGG - chr1_2:31592555-31592574 None:intergenic 40.0%
TGCCAATGCTTAGCAACTTC+AGG + chr1_2:31587210-31587229 Msa0067060:CDS 45.0%
AGCCTGAAGTTGCTAAGCAT+TGG - chr1_2:31587215-31587234 None:intergenic 45.0%
!! TCAGGCTCAAGTCTTATTGC+CGG + chr1_2:31587228-31587247 Msa0067060:CDS 45.0%
! CAGAGCATTAATCAAGGACC+AGG - chr1_2:31587298-31587317 None:intergenic 45.0%
CTGGTCCTTGATTAATGCTC+TGG + chr1_2:31587296-31587315 Msa0067060:CDS 45.0%
! TGACTCTGCAATGCACTGAT+GGG - chr1_2:31587357-31587376 None:intergenic 45.0%
ATGACTCTGCAATGCACTGA+TGG - chr1_2:31587358-31587377 None:intergenic 45.0%
TACAGCAACCTGAACAGCTT+TGG - chr1_2:31587481-31587500 None:intergenic 45.0%
TCGTTGCAGACTCAATACGT+TGG - chr1_2:31587518-31587537 None:intergenic 45.0%
TGCAACGATTTGTGGTCTTC+AGG + chr1_2:31587530-31587549 Msa0067060:CDS 45.0%
CCACTAACAACAGTAGTCAC+AGG - chr1_2:31587847-31587866 None:intergenic 45.0%
CCTGTGACTACTGTTGTTAG+TGG + chr1_2:31587844-31587863 Msa0067060:CDS 45.0%
GTGACTACTGTTGTTAGTGG+TGG + chr1_2:31587847-31587866 Msa0067060:CDS 45.0%
ACTACTGTTGTTAGTGGTGG+CGG + chr1_2:31587850-31587869 Msa0067060:CDS 45.0%
GTGTGCATCTTTGTTGAGAG+AGG - chr1_2:31587926-31587945 None:intergenic 45.0%
GAATGACGAATCAGAGCAGA+AGG - chr1_2:31587988-31588007 None:intergenic 45.0%
AAGCTGCTTCTTTGGTGAGT+TGG - chr1_2:31588082-31588101 None:intergenic 45.0%
!! TGGCTGATGCACTTTGAAGT+TGG - chr1_2:31588164-31588183 None:intergenic 45.0%
TCAAAGTGCATCAGCCATGT+TGG + chr1_2:31588167-31588186 Msa0067060:CDS 45.0%
AACGGATGACAAAGCCAACA+TGG - chr1_2:31588184-31588203 None:intergenic 45.0%
AACCAAAGTCCCATGTTCGA+GGG - chr1_2:31588211-31588230 None:intergenic 45.0%
! GGAAGCTTCCATATTGGCTA+GGG + chr1_2:31588346-31588365 Msa0067060:CDS 45.0%
CACAACTGCTGAACAGCTAA+TGG - chr1_2:31588423-31588442 None:intergenic 45.0%
TTATGTCACTGTCTCTCTGG+TGG + chr1_2:31588573-31588592 Msa0067060:CDS 45.0%
ATAAAAAACTGGACCGGACC+TGG + chr1_2:31588681-31588700 Msa0067060:CDS 45.0%
GTTGCTCTTCAAAATGCACC+TGG + chr1_2:31588768-31588787 Msa0067060:CDS 45.0%
! GAGAGTATGCATGGAAGACA+AGG + chr1_2:31588854-31588873 Msa0067060:CDS 45.0%
AGGCAACGAAGGATAATGCT+AGG - chr1_2:31589317-31589336 None:intergenic 45.0%
CCATATGATCTAGGCAACGA+AGG - chr1_2:31589328-31589347 None:intergenic 45.0%
CCTTCGTTGCCTAGATCATA+TGG + chr1_2:31589325-31589344 Msa0067060:CDS 45.0%
! CTCACAAGTTGGACTGCTAA+AGG - chr1_2:31589407-31589426 None:intergenic 45.0%
GCAGTCCAACTTGTGAGTAA+AGG + chr1_2:31589410-31589429 Msa0067060:CDS 45.0%
AGAAGGTTCTTTGACCTGTC+AGG + chr1_2:31589455-31589474 Msa0067060:CDS 45.0%
TGACCTGTCAGGACTAAAAG+AGG + chr1_2:31589466-31589485 Msa0067060:CDS 45.0%
TGATCTTGCTCGTATGGACA+AGG + chr1_2:31589517-31589536 Msa0067060:CDS 45.0%
CTTTCCGTTTCCTGTTGTTC+AGG + chr1_2:31590167-31590186 Msa0067060:intron 45.0%
CTGATCCAGACAAACGAACA+AGG + chr1_2:31590715-31590734 Msa0067060:CDS 45.0%
GAGGAGGTCAATTCCTCATT+TGG + chr1_2:31591077-31591096 Msa0067060:CDS 45.0%
TTTGTTGCAAATGGCAGAGG+AGG + chr1_2:31591104-31591123 Msa0067060:CDS 45.0%
!! CACTTTATGCTGCTGGCTTT+GGG - chr1_2:31591692-31591711 None:intergenic 45.0%
!! ACACTTTATGCTGCTGGCTT+TGG - chr1_2:31591693-31591712 None:intergenic 45.0%
GGCGCAGTAGTTATGTCTAA+AGG + chr1_2:31591813-31591832 Msa0067060:intron 45.0%
TGAGGAACATGGACGTATGT+AGG + chr1_2:31591849-31591868 Msa0067060:intron 45.0%
! GAAGCTTGTTTAAAGAGGGC+AGG + chr1_2:31592018-31592037 Msa0067060:intron 45.0%
TAGATAGACAGGACATGAGG+TGG + chr1_2:31592081-31592100 Msa0067060:intron 45.0%
GTGGTCTTCAATGGTTGAAG+AGG + chr1_2:31592100-31592119 Msa0067060:intron 45.0%
TAACACGTTCAGCGCTTGAA+GGG - chr1_2:31592197-31592216 None:intergenic 45.0%
AACTTCAGGAGAGACTGCAA+AGG - chr1_2:31592295-31592314 None:intergenic 45.0%
ATGCGCACACATCTTTGCTA+AGG - chr1_2:31592401-31592420 None:intergenic 45.0%
CAGGGAACAAAGGTGATGAA+CGG - chr1_2:31592444-31592463 None:intergenic 45.0%
GCTGAAGCCTTCCAATTACA+GGG - chr1_2:31592462-31592481 None:intergenic 45.0%
TGCTGAAGCCTTCCAATTAC+AGG - chr1_2:31592463-31592482 None:intergenic 45.0%
CACGGATGCATATTTGGCAA+TGG - chr1_2:31592500-31592519 None:intergenic 45.0%
!!! TAAAAAACTTATTTTATTAT+AGG - chr1_2:31591646-31591665 None:intergenic 5.0%
!! CCTGAACAGCTTTGGTTCTC+AGG - chr1_2:31587473-31587492 None:intergenic 50.0%
CCTGAGAACCAAAGCTGTTC+AGG + chr1_2:31587470-31587489 Msa0067060:CDS 50.0%
!!! TGGTCGCTTGCCCTTGTTTT+AGG + chr1_2:31587559-31587578 Msa0067060:intron 50.0%
CTGGAACAATTCCACTGTGG+AGG - chr1_2:31587795-31587814 None:intergenic 50.0%
ATTGTTCCAGCCGTCCTTTG+TGG + chr1_2:31587805-31587824 Msa0067060:CDS 50.0%
TTGTTCCAGCCGTCCTTTGT+GGG + chr1_2:31587806-31587825 Msa0067060:CDS 50.0%
GTAGTCACAGGAAGGGAACT+GGG - chr1_2:31587835-31587854 None:intergenic 50.0%
AGTAGTCACAGGAAGGGAAC+TGG - chr1_2:31587836-31587855 None:intergenic 50.0%
AGTCGAGCAAGCTGCTTCTT+TGG - chr1_2:31588090-31588109 None:intergenic 50.0%
TCCGTTCTTTCCCTCGAACA+TGG + chr1_2:31588198-31588217 Msa0067060:CDS 50.0%
CCCATGTTCGAGGGAAAGAA+CGG - chr1_2:31588202-31588221 None:intergenic 50.0%
CCGTTCTTTCCCTCGAACAT+GGG + chr1_2:31588199-31588218 Msa0067060:CDS 50.0%
TTCCCTCGAACATGGGACTT+TGG + chr1_2:31588206-31588225 Msa0067060:CDS 50.0%
CAACCAAAGTCCCATGTTCG+AGG - chr1_2:31588212-31588231 None:intergenic 50.0%
! GGGAAGCTTCCATATTGGCT+AGG + chr1_2:31588345-31588364 Msa0067060:CDS 50.0%
GGGATAAGAGATGGGTGTGT+TGG + chr1_2:31588366-31588385 Msa0067060:CDS 50.0%
GATTCCAAACTCAAGTGGGG+AGG + chr1_2:31588396-31588415 Msa0067060:CDS 50.0%
GTTCAGCAGTTGTGTGCTAG+TGG + chr1_2:31588429-31588448 Msa0067060:CDS 50.0%
!! CTGACAGAAGCATTGGCTGA+TGG - chr1_2:31588798-31588817 None:intergenic 50.0%
CCAATGCTTCTGTCAGCAGT+GGG + chr1_2:31588802-31588821 Msa0067060:CDS 50.0%
CATGCATACTCTCTGACCAG+GGG - chr1_2:31588847-31588866 None:intergenic 50.0%
CCATGCATACTCTCTGACCA+GGG - chr1_2:31588848-31588867 None:intergenic 50.0%
TCCATGCATACTCTCTGACC+AGG - chr1_2:31588849-31588868 None:intergenic 50.0%
! TGGAGTTGAACGATTTGGGC+AGG + chr1_2:31589345-31589364 Msa0067060:CDS 50.0%
GTTGGACTGCTAAAGGTCGT+TGG - chr1_2:31589400-31589419 None:intergenic 50.0%
GCAAAAGCTTGCAGTGCTCT+TGG + chr1_2:31590270-31590289 Msa0067060:CDS 50.0%
AAGACCAAGGCAAATGCAGC+AGG + chr1_2:31591129-31591148 Msa0067060:CDS 50.0%
AGCAGGTGCACTTAGCAATC+TGG + chr1_2:31591146-31591165 Msa0067060:CDS 50.0%
TGTGTCTAAAGGAGCCGTTC+AGG + chr1_2:31591200-31591219 Msa0067060:CDS 50.0%
AAAGGTCCTCCTTGAGCATG+AGG + chr1_2:31591831-31591850 Msa0067060:intron 50.0%
CATGTTCCTCATGCTCAAGG+AGG - chr1_2:31591840-31591859 None:intergenic 50.0%
CTCCTTGAGCATGAGGAACA+TGG + chr1_2:31591838-31591857 Msa0067060:intron 50.0%
GTCCATGTTCCTCATGCTCA+AGG - chr1_2:31591843-31591862 None:intergenic 50.0%
CTTGTTTAAAGAGGGCAGGG+AGG + chr1_2:31592022-31592041 Msa0067060:intron 50.0%
GGACATGAGGTGGTCTTCAA+TGG + chr1_2:31592091-31592110 Msa0067060:intron 50.0%
GTAACACGTTCAGCGCTTGA+AGG - chr1_2:31592198-31592217 None:intergenic 50.0%
CGGCTGGAACAATTCCACTG+TGG - chr1_2:31587798-31587817 None:intergenic 55.0%
ACTGGGAAGCCCACAAAGGA+CGG - chr1_2:31587818-31587837 None:intergenic 55.0%
!! GTTGTTAGTGGTGGCGGTGA+TGG + chr1_2:31587856-31587875 Msa0067060:CDS 55.0%
TGGTCCTCCCCACTTGAGTT+TGG - chr1_2:31588403-31588422 None:intergenic 55.0%
AAAAACTGGACCGGACCTGG+TGG + chr1_2:31588684-31588703 Msa0067060:CDS 55.0%
GCCAATGCTTCTGTCAGCAG+TGG + chr1_2:31588801-31588820 Msa0067060:CDS 55.0%
! CCCACTGCTGACAGAAGCAT+TGG - chr1_2:31588805-31588824 None:intergenic 55.0%
!! CTTCTTAACGTCGGTTCCCC+TGG + chr1_2:31588828-31588847 Msa0067060:CDS 55.0%
! CCCTGGTCAGAGAGTATGCA+TGG + chr1_2:31588845-31588864 Msa0067060:CDS 55.0%
TGCACCTGCTGCATTTGCCT+TGG - chr1_2:31591136-31591155 None:intergenic 55.0%
! TAAAGAGGGCAGGGAGGTGT+AGG + chr1_2:31592028-31592047 Msa0067060:intron 55.0%
CGGATGAACTGTCTGCAGAG+TGG - chr1_2:31592424-31592443 None:intergenic 55.0%
CTGAAGCATGCAGAGCTGCC+TGG + chr1_2:31587277-31587296 Msa0067060:CDS 60.0%
!! TCAAGGTGCTGCCTCCACAG+TGG + chr1_2:31587781-31587800 Msa0067060:CDS 60.0%
GGGAACTGGGAAGCCCACAA+AGG - chr1_2:31587822-31587841 None:intergenic 60.0%
!! GCATTGGCTGATGGCAAGCC+AGG - chr1_2:31588789-31588808 None:intergenic 60.0%
! GAACGATTTGGGCAGGCCTG+TGG + chr1_2:31589352-31589371 Msa0067060:CDS 60.0%
GGCAGAGGAGGACAAGACCA+AGG + chr1_2:31591116-31591135 Msa0067060:CDS 60.0%
GCAGCGAGCACGTACCTGAA+CGG - chr1_2:31591217-31591236 None:intergenic 60.0%
GGAAGCCCACAAAGGACGGC+TGG - chr1_2:31587814-31587833 None:intergenic 65.0%
AACTGGACCGGACCTGGTGG+AGG + chr1_2:31588687-31588706 Msa0067060:CDS 65.0%
ACTGGACCGGACCTGGTGGA+GGG + chr1_2:31588688-31588707 Msa0067060:CDS 65.0%
GGCTCTCCCTCCACCAGGTC+CGG - chr1_2:31588697-31588716 None:intergenic 70.0%
GGACCTGGTGGAGGGAGAGC+CGG + chr1_2:31588696-31588715 Msa0067060:CDS 70.0%
ACTCCGGCTCTCCCTCCACC+AGG - chr1_2:31588702-31588721 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 31587002 31592797 31587002 ID=Msa0067060;Name=Msa0067060
chr1_2 mRNA 31587002 31592797 31587002 ID=Msa0067060-mRNA-1;Parent=Msa0067060;Name=Msa0067060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=88|1|1|1|0.85|0.75|8|231|837
chr1_2 exon 31587002 31587551 31587002 ID=Msa0067060-mRNA-1:exon:10431;Parent=Msa0067060-mRNA-1
chr1_2 exon 31587775 31588932 31587775 ID=Msa0067060-mRNA-1:exon:10432;Parent=Msa0067060-mRNA-1
chr1_2 exon 31589305 31589538 31589305 ID=Msa0067060-mRNA-1:exon:10433;Parent=Msa0067060-mRNA-1
chr1_2 exon 31590189 31590332 31590189 ID=Msa0067060-mRNA-1:exon:10434;Parent=Msa0067060-mRNA-1
chr1_2 exon 31590675 31590755 31590675 ID=Msa0067060-mRNA-1:exon:10435;Parent=Msa0067060-mRNA-1
chr1_2 exon 31591033 31591221 31591033 ID=Msa0067060-mRNA-1:exon:10436;Parent=Msa0067060-mRNA-1
chr1_2 exon 31592301 31592577 31592301 ID=Msa0067060-mRNA-1:exon:10437;Parent=Msa0067060-mRNA-1
chr1_2 exon 31592598 31592797 31592598 ID=Msa0067060-mRNA-1:exon:10438;Parent=Msa0067060-mRNA-1
chr1_2 five_prime_UTR 31587002 31587089 31587002 ID=Msa0067060-mRNA-1:five_prime_utr;Parent=Msa0067060-mRNA-1
chr1_2 CDS 31587090 31587551 31587090 ID=Msa0067060-mRNA-1:cds;Parent=Msa0067060-mRNA-1
chr1_2 CDS 31587775 31588932 31587775 ID=Msa0067060-mRNA-1:cds;Parent=Msa0067060-mRNA-1
chr1_2 CDS 31589305 31589538 31589305 ID=Msa0067060-mRNA-1:cds;Parent=Msa0067060-mRNA-1
chr1_2 CDS 31590189 31590332 31590189 ID=Msa0067060-mRNA-1:cds;Parent=Msa0067060-mRNA-1
chr1_2 CDS 31590675 31590755 31590675 ID=Msa0067060-mRNA-1:cds;Parent=Msa0067060-mRNA-1
chr1_2 CDS 31591033 31591221 31591033 ID=Msa0067060-mRNA-1:cds;Parent=Msa0067060-mRNA-1
chr1_2 CDS 31592301 31592546 31592301 ID=Msa0067060-mRNA-1:cds;Parent=Msa0067060-mRNA-1
chr1_2 three_prime_UTR 31592547 31592577 31592547 ID=Msa0067060-mRNA-1:three_prime_utr;Parent=Msa0067060-mRNA-1
chr1_2 three_prime_UTR 31592598 31592797 31592598 ID=Msa0067060-mRNA-1:three_prime_utr;Parent=Msa0067060-mRNA-1
Gene Sequence

>Msa0067060

ATGTTGTCTAAAGTTACTCAAGTGCTTAGATCATCTCAAATTTCAGGCTCAGAGACACTGAATGAAACAGCTAACAGAATTATAGATCATGCGAAAACATCTGGTTTAGTGGACCATTTGTGCCAATGCTTAGCAACTTCAGGCTCAAGTCTTATTGCCGGTTCTTCAAATATGCTACGGGCTGCTTCTGAAGCATGCAGAGCTGCCTGGTCCTTGATTAATGCTCTGGACGTTCTTTTTATGAAAAAAAGTGCCATTTTGTTTCCCATCAGTGCATTGCAGAGTCATTTTTTGCAGAGGACAGAAATTATGGATCACAGACAAGATCCCTTGTTTGACGAAGAATCAACAAAAATGGTTGATGCAATGACACGAGCATTCCTGAGAACCAAAGCTGTTCAGGTTGCTGTATACTATTGTTTTCACCAACGTATTGAGTCTGCAACGATTTGTGGTCTTCAGCTTTTGTCAAGGTGCTGCCTCCACAGTGGAATTGTTCCAGCCGTCCTTTGTGGGCTTCCCAGTTCCCTTCCTGTGACTACTGTTGTTAGTGGTGGCGGTGATGGCACTATTGTTTCAGAGATTTTTTCAGTTTTGTCAATATGCAGTTCCTCTCTCAACAAAGATGCACACAGTGTCGAACCAAGTAACACTAAATGTAAATTAGCAAATCCTTCTGCTCTGATTCGTCATTCATGTCTCATTCTTACAATAATTGCACAACATTTGAAGTCAACTGGAAGAAATTCTGCAATTTTTATGCTCACCAACTCACCAAAGAAGCAGCTTGCTCGACTCTCAGTTCTTGCTCATCATGTTTCTTATGATGATAAAACAAAAGCCTCTTTCCAACTTCAAAGTGCATCAGCCATGTTGGCTTTGTCATCCGTTCTTTCCCTCGAACATGGGACTTTGGTTGAGTCTCCGATATCTGAAATTGCTATGCCCTTAATTCCTCGAACTTCTACACTAAGTGACCACCTTAAATTTTCATCAGGAAAAGAAAATGAACTGGACCCTGGTAATTTTAATGGGAAGCTTCCATATTGGCTAGGGATAAGAGATGGGTGTGTTGGTCTTTTAGATTCCAAACTCAAGTGGGGAGGACCATTAGCTGTTCAGCAGTTGTGTGCTAGTGGTATACCTCTTCTTCTTATCGGCTTGTTAAGCAATGGGTTTTCGAATGCTTCTCAAGAAAACGAGTGCCTAAACAATAGAATTGGATTATCTCCTATAGGTGTTGTGTGGACAATTTCATCATTATGTCACTGTCTCTCTGGTGGTGCTATGATTTTTCGTCAGATTTTGATTAGGAATGAACATGTTAAGCTCATATCCAACTTAATATGTGATGCTCATCTTAAGTTGATAAAAAACTGGACCGGACCTGGTGGAGGGAGAGCCGGAGTTAGAGATCTAATAAATGCAGTCATAGATCTCTTAGCATTTCCTTTTGTTGCTCTTCAAAATGCACCTGGCTTGCCATCAGCCAATGCTTCTGTCAGCAGTGGGTTTCTTCTTAACGTCGGTTCCCCTGGTCAGAGAGTATGCATGGAAGACAAGGATACAGTTAAGGCAATAGAAGAAGACATGGGCAAATACATTAAGATCCTTGTGGAGGTTGGTGCGCCTAGCATTATCCTTCGTTGCCTAGATCATATGGAGTTGAACGATTTGGGCAGGCCTGTGGCCTTTCTTGCTAAAATGGTGTGCCAACGACCTTTAGCAGTCCAACTTGTGAGTAAAGGTCTTTTGGATCCAAATAGGATGAGAAGGTTCTTTGACCTGTCAGGACTAAAAGAGGTTATGCTGGATGCGCTTATGATAATTTCTGATCTTGCTCGTATGGACAAGGGATTCTATGAGTACATTAAAGGTGCTTCTATTTTGGAGTTCTTAAAAAGTTTTCTTTCGCATGAAGATCCAAATATGCGTGCAAAAGCTTGCAGTGCTCTTGGAAACATGTGTCGTCACAATGCCTATTTTTACAGTTCTCTTGCAAGATATCAAATCGTTGGTATTCTTATTGATCGATGCTCTGATCCAGACAAACGAACAAGGAAGTTTGCTTGTTTTGCTATTGGAAATGCGGCGTACTACAATGACGTGTTGTATGAAGAACTGAGGAGGTCAATTCCTCATTTGGCAAATTTGTTGCAAATGGCAGAGGAGGACAAGACCAAGGCAAATGCAGCAGGTGCACTTAGCAATCTGGTTCGCAACTCTGACAGACTTTGTGAAGACATTGTGTCTAAAGGAGCCGTTCAGTCTCTCCTGAAGTTAATTTCCGATTATGCGGTATCAGCACTAAATCCAAGCAGAAATGATTCAACGAACGAGTCTCCTTTGAAGATCGCTCTCTTTTCCTTAGCAAAGATGTGTGCGCATCCACTCTGCAGACAGTTCATCCGTTCATCACCTTTGTTCCCTGTAATTGGAAGGCTTCAGCAGTCTCCAGAATCATCCATTGCCAAATATGCATCCGTGATCATTAGCAAAGTTGCTGAAGTCTAG

Protein sequence

>Msa0067060

MLSKVTQVLRSSQISGSETLNETANRIIDHAKTSGLVDHLCQCLATSGSSLIAGSSNMLRAASEACRAAWSLINALDVLFMKKSAILFPISALQSHFLQRTEIMDHRQDPLFDEESTKMVDAMTRAFLRTKAVQVAVYYCFHQRIESATICGLQLLSRCCLHSGIVPAVLCGLPSSLPVTTVVSGGGDGTIVSEIFSVLSICSSSLNKDAHSVEPSNTKCKLANPSALIRHSCLILTIIAQHLKSTGRNSAIFMLTNSPKKQLARLSVLAHHVSYDDKTKASFQLQSASAMLALSSVLSLEHGTLVESPISEIAMPLIPRTSTLSDHLKFSSGKENELDPGNFNGKLPYWLGIRDGCVGLLDSKLKWGGPLAVQQLCASGIPLLLIGLLSNGFSNASQENECLNNRIGLSPIGVVWTISSLCHCLSGGAMIFRQILIRNEHVKLISNLICDAHLKLIKNWTGPGGGRAGVRDLINAVIDLLAFPFVALQNAPGLPSANASVSSGFLLNVGSPGQRVCMEDKDTVKAIEEDMGKYIKILVEVGAPSIILRCLDHMELNDLGRPVAFLAKMVCQRPLAVQLVSKGLLDPNRMRRFFDLSGLKEVMLDALMIISDLARMDKGFYEYIKGASILEFLKSFLSHEDPNMRAKACSALGNMCRHNAYFYSSLARYQIVGILIDRCSDPDKRTRKFACFAIGNAAYYNDVLYEELRRSIPHLANLLQMAEEDKTKANAAGALSNLVRNSDRLCEDIVSKGAVQSLLKLISDYAVSALNPSRNDSTNESPLKIALFSLAKMCAHPLCRQFIRSSPLFPVIGRLQQSPESSIAKYASVIISKVAEV*