AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1300460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300460 MtrunA17_Chr4g0062781 95.089 672 27 3 1 672 1 666 0.0 1214
Msa1300460 MtrunA17_Chr6g0475401 58.824 119 49 0 1 119 1 119 7.56e-42 159
Msa1300460 MtrunA17_Chr6g0475401 29.123 285 137 10 415 667 282 533 1.79e-22 101
Msa1300460 MtrunA17_Chr4g0033751 55.000 120 54 0 1 120 1 120 1.72e-39 155
Msa1300460 MtrunA17_Chr4g0033751 25.934 482 222 18 296 661 245 707 5.65e-20 94.7
Msa1300460 MtrunA17_Chr5g0413621 48.760 121 61 1 1 120 1 121 5.27e-33 134
Msa1300460 MtrunA17_Chr2g0309091 45.082 122 61 2 1 120 1 118 2.07e-21 99.0
Msa1300460 MtrunA17_Chr2g0329581 26.509 464 221 16 302 661 271 718 3.79e-15 79.3
Msa1300460 MtrunA17_Chr6g0475421 32.787 122 66 5 559 667 8 126 2.13e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300460 AT4G13370.1 52.849 702 267 20 1 668 1 672 0.0 621
Msa1300460 AT3G14170.1 53.600 125 58 0 1 125 1 125 3.38e-39 152
Msa1300460 AT3G14170.1 33.058 242 145 8 425 661 269 498 8.39e-21 96.7
Msa1300460 AT3G14170.2 53.600 125 58 0 1 125 1 125 3.46e-39 152
Msa1300460 AT3G14170.2 33.058 242 145 8 425 661 270 499 8.36e-21 97.1
Msa1300460 AT1G08760.1 54.167 120 55 0 1 120 1 120 9.92e-38 150
Msa1300460 AT1G23790.1 48.760 121 61 1 1 120 1 121 3.19e-31 128
Msa1300460 AT1G23790.1 25.442 283 177 6 335 609 220 476 8.11e-12 68.6
Msa1300460 AT1G70340.1 46.667 120 63 1 1 119 1 120 1.17e-28 120
Msa1300460 AT1G70340.1 27.320 194 115 5 421 595 266 452 5.77e-11 65.9
Msa1300460 AT3G19610.1 40.833 120 70 1 1 119 29 148 3.83e-23 104
Msa1300460 AT3G19610.1 25.773 291 168 8 408 662 331 609 1.87e-15 80.5
Msa1300460 AT2G31920.1 39.583 144 68 6 1 126 1 143 3.22e-18 89.4

Find 189 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTGCTTGTAGGAGTTTA+AGG 0.150497 8_3:+62041893 None:intergenic
GCTAGCTTATGAAGTTGATT+AGG 0.264854 8_3:-62039148 Msa1300460:three_prime_UTR
AATCAAAGTCCATCTCTCTT+TGG 0.278109 8_3:-62039721 Msa1300460:CDS
CTCAATAATCGTCTTCAATT+AGG 0.282819 8_3:-62041697 Msa1300460:CDS
CTCTTCTCCTCAAAGTTGTT+TGG 0.293151 8_3:-62040587 Msa1300460:CDS
CAAATGTGTGGTTCCGAGTT+TGG 0.301462 8_3:-62041233 Msa1300460:CDS
CTTGTAGGAGTTTAAGGATT+AGG 0.303053 8_3:+62041899 None:intergenic
CAGCCAGTGCGATTGATCTT+AGG 0.304082 8_3:+62039786 None:intergenic
CTAGCTTATGAAGTTGATTA+GGG 0.311335 8_3:-62039147 Msa1300460:three_prime_UTR
TCTTTGGGTTGAAGCTGCTT+TGG 0.323248 8_3:-62039705 Msa1300460:CDS
CGAAGACCGCGAGGAAGAAT+TGG 0.326678 8_3:-62040964 Msa1300460:CDS
GGAGAAATGGAAGCTCTTCT+AGG 0.336586 8_3:+62041100 None:intergenic
ATCAAAGTCCATCTCTCTTT+GGG 0.337514 8_3:-62039720 Msa1300460:CDS
GAAGCAGGATTTAAAGTGTT+TGG 0.350982 8_3:-62039482 Msa1300460:CDS
AATGTATAATAAGAAATTTA+AGG 0.353960 8_3:-62040104 Msa1300460:intron
CAAACTCGGAACCACACATT+TGG 0.375036 8_3:+62041234 None:intergenic
AAATCCAAGTTTGCAGGTCT+TGG 0.376268 8_3:-62040556 Msa1300460:CDS
CTGTGTCTGGCAAACTTTCA+AGG 0.377282 8_3:-62040480 Msa1300460:CDS
CAATCTTCTCCCCGGAGAAA+TGG 0.380821 8_3:+62041087 None:intergenic
TCACAATCTGCAGGGAAGTT+TGG 0.388321 8_3:-62041325 Msa1300460:CDS
GCCACCAAGACCTGCAAACT+TGG 0.401930 8_3:+62040552 None:intergenic
ATACGAGCTACGAGTGGTTC+CGG 0.406699 8_3:+62041577 None:intergenic
TTCATCTTCCCCGCCGGAGA+TGG 0.407138 8_3:+62041280 None:intergenic
TTACAATTCATGAAAAGAAA+TGG 0.412348 8_3:-62040528 Msa1300460:CDS
TTCTGATATGTTGGCTGGAT+CGG 0.412742 8_3:-62040987 Msa1300460:CDS
GTTCCTCTTGATGCTGTGTC+TGG 0.415818 8_3:-62040493 Msa1300460:CDS
TCTGGCAAACTTTCAAGGCT+TGG 0.416539 8_3:-62040475 Msa1300460:CDS
ACACTTTAAATCCTGCTTCA+AGG 0.421734 8_3:+62039486 None:intergenic
TCTACCTCCAAACAACTTTG+AGG 0.422189 8_3:+62040580 None:intergenic
AAGATTTCTGATATGTTGGC+TGG 0.422950 8_3:-62040992 Msa1300460:CDS
TTCTAAGATTTCTGATATGT+TGG 0.426049 8_3:-62040996 Msa1300460:CDS
TAGAAGAGCTTCCATTTCTC+CGG 0.433087 8_3:-62041098 Msa1300460:CDS
TTGTGCGGTGGTTGTGTTGG+TGG 0.437876 8_3:+62041483 None:intergenic
AAGGGGTGGCGCGTGGGGAG+AGG 0.444224 8_3:+62041610 None:intergenic
AGCGATCAACGTAGAGGAAC+TGG 0.452421 8_3:+62041674 None:intergenic
CACTTTAAATCCTGCTTCAA+GGG 0.454714 8_3:+62039487 None:intergenic
TTGAGAATGAGATCGGTGTC+AGG 0.455000 8_3:+62041715 None:intergenic
CGACGAAGGGGTGGCGCGTG+GGG 0.457884 8_3:+62041605 None:intergenic
ATGGAAGCTCTTCTAGGATT+CGG 0.459733 8_3:+62041106 None:intergenic
GCGAAGAAGAAGATGGTAGC+TGG 0.461789 8_3:-62041022 Msa1300460:CDS
TTGTTGTTGATTGATCTGAA+TGG 0.461960 8_3:+62041456 None:intergenic
TCTTAGGACATCATCATAGA+TGG 0.462692 8_3:+62039802 None:intergenic
GGATCATCGGAATCTGATAA+TGG 0.463605 8_3:+62041523 None:intergenic
TGTCGGTGTTCATTGCTTGT+AGG 0.464305 8_3:+62041884 None:intergenic
TTGGACCGCGTGGTTTCTAA+AGG 0.464455 8_3:-62039368 Msa1300460:CDS
ATTTAACCATTGAGTCATCA+TGG 0.467127 8_3:+62039076 None:intergenic
GTAGAGAAATCCAAGTTTGC+AGG 0.469399 8_3:-62040562 Msa1300460:CDS
AAAATAATTCAGGATGAAGC+AGG 0.470051 8_3:+62039248 None:intergenic
TCCGACGAAGGGGTGGCGCG+TGG 0.470364 8_3:+62041603 None:intergenic
CGGGTACAATTCCGATGAGT+TGG 0.471036 8_3:+62041827 None:intergenic
GTTGAAGAATCCCTTGAAGC+AGG 0.472477 8_3:-62039497 Msa1300460:CDS
AGGACAATCGGAAGGTTTCA+CGG 0.472653 8_3:-62041198 Msa1300460:CDS
TGTTGTTGATTGATCTGAAT+GGG 0.478239 8_3:+62041457 None:intergenic
TATTATACATTCAGTAGCAT+TGG 0.478800 8_3:+62040116 None:intergenic
GGCTGCTTCCTTGCCGTCGT+CGG 0.478828 8_3:+62041133 None:intergenic
ACATCTAAGAGTCAAGGAAA+TGG 0.484092 8_3:-62039587 Msa1300460:CDS
AGAAGAGCTTCCATTTCTCC+GGG 0.485310 8_3:-62041097 Msa1300460:CDS
GAAGACCGCGAGGAAGAATT+GGG 0.485667 8_3:-62040963 Msa1300460:CDS
TCCAAGTTTGCAGGTCTTGG+TGG 0.486001 8_3:-62040553 Msa1300460:CDS
AGATTGTGCGGTGGTTGTGT+TGG 0.486412 8_3:+62041480 None:intergenic
CTCCATCAGAACTTCAGAAA+AGG 0.488000 8_3:-62039634 Msa1300460:CDS
TTCTCCTCAAAGTTGTTTGG+AGG 0.492108 8_3:-62040584 Msa1300460:CDS
CCGACGAAGGGGTGGCGCGT+GGG 0.494772 8_3:+62041604 None:intergenic
ACCACACATTTGGACGGTAC+TGG 0.494996 8_3:+62041244 None:intergenic
AACCTAAAGAAAAGAGTGTT+GGG 0.495676 8_3:-62040919 Msa1300460:CDS
GAGTGTTGGGTCTAAAACTA+GGG 0.500304 8_3:-62040906 Msa1300460:CDS
TGGACCGCGTGGTTTCTAAA+GGG 0.500717 8_3:-62039367 Msa1300460:CDS
TTAAATCAAACTCGAAGTTA+CGG 0.502752 8_3:+62039119 None:intergenic
TGCTGCTGCAGCATTAGAAG+AGG 0.503717 8_3:-62040139 Msa1300460:CDS
ATGGACTTTGATTGACATGT+TGG 0.503918 8_3:+62039731 None:intergenic
AGATGAACAATGTTCATTCA+CGG 0.504841 8_3:-62041417 Msa1300460:CDS
AGAGTGTTGGGTCTAAAACT+AGG 0.505716 8_3:-62040907 Msa1300460:CDS
TTTCTGATTTACTTTGACTG+TGG 0.505935 8_3:-62039222 Msa1300460:three_prime_UTR
TAGACAGCCGTCTCCGACGA+CGG 0.506706 8_3:-62041146 Msa1300460:CDS
TGACAGAAGGAAGAGGGGTG+TGG 0.507074 8_3:+62041644 None:intergenic
TGGTTCCGGCGTTCCGACGA+AGG 0.509243 8_3:+62041591 None:intergenic
AACAAACCATGATGACTCAA+TGG 0.509923 8_3:-62039082 Msa1300460:three_prime_UTR
ATGAAAGAAACACTGGAGCT+TGG 0.510836 8_3:-62039563 Msa1300460:CDS
TTCCTTGCCGTCGTCGGAGA+CGG 0.511810 8_3:+62041139 None:intergenic
AACACCGACACACGTGTCAC+CGG 0.513735 8_3:-62041871 Msa1300460:CDS
GGTTCCGGCGTTCCGACGAA+GGG 0.515235 8_3:+62041592 None:intergenic
GCTAAACGATCACAATCTGC+AGG 0.518004 8_3:-62041334 Msa1300460:CDS
TTTCTGCTCGAGAGGACAAT+CGG 0.518876 8_3:-62041210 Msa1300460:CDS
GTTGAGAAAGAAGCCTTCGT+TGG 0.523258 8_3:+62041780 None:intergenic
AAGAGGAGAACGGTGGTCGC+CGG 0.524267 8_3:+62041852 None:intergenic
CCCACGCGCCACCCCTTCGT+CGG 0.526098 8_3:-62041604 Msa1300460:CDS
TGGGATGAACAAAATGTTGA+AGG 0.528068 8_3:-62040944 Msa1300460:CDS
GTGAATTGAGTGTGTGTGTG+TGG 0.528700 8_3:+62041956 None:intergenic
CATGAAAAGAAATGGACTGA+TGG 0.533330 8_3:-62040520 Msa1300460:CDS
GAACCTAAAGAAAAGAGTGT+TGG 0.534909 8_3:-62040920 Msa1300460:CDS
TCCGATCTCTTCTCCAACGA+AGG 0.541927 8_3:-62041793 Msa1300460:CDS
GGACAATCGGAAGGTTTCAC+GGG 0.547990 8_3:-62041197 Msa1300460:CDS
ATACAAAGAAAGAGGATCAT+CGG 0.547997 8_3:+62041510 None:intergenic
GTTGGAGAAGAGATCGGAGC+TGG 0.548071 8_3:+62041798 None:intergenic
GATGAAAATCTCTTCGGCGT+TGG 0.550115 8_3:+62041367 None:intergenic
GAAGCGAGTAAATGCATGGT+TGG 0.550345 8_3:-62039387 Msa1300460:CDS
AACTTGTCTATGGTTGGCAA+AGG 0.553870 8_3:+62039830 None:intergenic
GCCGGAGATGAAAATCTCTT+CGG 0.553949 8_3:+62041361 None:intergenic
CAAAAGTTGATCCTACATGC+TGG 0.555614 8_3:+62039285 None:intergenic
TGGGAAGAAAGCATTGCCTC+TGG 0.557044 8_3:-62039444 Msa1300460:CDS
GTGGAGAGATACAAAGAAAG+AGG 0.558315 8_3:+62041502 None:intergenic
GGACGAATGTTGGTGACAGA+AGG 0.561250 8_3:+62041631 None:intergenic
TCTCCGGGGAGAAGATTGTC+CGG 0.562207 8_3:-62041082 Msa1300460:CDS
GAGTTTGGTTTCTGCTCGAG+AGG 0.563793 8_3:-62041218 Msa1300460:CDS
CAAACTTTCAAGGCTTGGAA+AGG 0.566906 8_3:-62040470 Msa1300460:intron
GAGATCGGAGCTGGATAAAG+CGG 0.567835 8_3:+62041807 None:intergenic
TGCTCGAGAGGACAATCGGA+AGG 0.568084 8_3:-62041206 Msa1300460:CDS
CCGGCGTTCCGACGAAGGGG+TGG 0.569095 8_3:+62041596 None:intergenic
TACTGTCAGAAATGCAAATG+TGG 0.570442 8_3:-62039532 Msa1300460:CDS
GAGAGAGATCCATCTCCGGC+GGG 0.572867 8_3:-62041289 Msa1300460:CDS
ACGATTATTGAGAATGAGAT+CGG 0.574044 8_3:+62041708 None:intergenic
CGAAGAAGAAGATGGTAGCT+GGG 0.578184 8_3:-62041021 Msa1300460:CDS
TCTCCTCTTCTCCAACTCAT+CGG 0.580371 8_3:-62041838 Msa1300460:CDS
AAATAATTCAGGATGAAGCA+GGG 0.580487 8_3:+62039249 None:intergenic
GGAATCTGATAATGGTTGAA+TGG 0.580488 8_3:+62041531 None:intergenic
AAATGGAATGAAAGAAACAC+TGG 0.581658 8_3:-62039570 Msa1300460:CDS
TTCTACTGCGAAGAAGAAGA+TGG 0.582612 8_3:-62041029 Msa1300460:CDS
AGCCGTCTCCGACGACGGCA+AGG 0.583416 8_3:-62041141 Msa1300460:CDS
CTTAGCACATCTAAGAGTCA+AGG 0.583945 8_3:-62039593 Msa1300460:CDS
GCAGTAGAATCTCCAACAGC+CGG 0.584352 8_3:+62041043 None:intergenic
ATGTGACAAAACAATAGCAA+TGG 0.584972 8_3:+62039412 None:intergenic
GGCGTTGGTAAATTATCTCG+TGG 0.585036 8_3:+62041382 None:intergenic
GTGAGAGAGAAGAACGTAGG+TGG 0.587901 8_3:+62041738 None:intergenic
CGTGGGGAGAGGACGAATGT+TGG 0.589608 8_3:+62041621 None:intergenic
TGCTGAGAGAGATCCATCTC+CGG 0.591594 8_3:-62041293 Msa1300460:CDS
CCACCCCTTCGTCGGAACGC+CGG 0.591684 8_3:-62041596 Msa1300460:CDS
CTCGGAACCACACATTTGGA+CGG 0.593446 8_3:+62041238 None:intergenic
TTAGAGCTTGTTTGTCAATG+TGG 0.593742 8_3:-62039053 Msa1300460:three_prime_UTR
TGTTGGTGACAGAAGGAAGA+GGG 0.595214 8_3:+62041638 None:intergenic
AGGAGTTTAAGGATTAGGCC+TGG 0.595603 8_3:+62041904 None:intergenic
AGATCGGAGCTGGATAAAGC+GGG 0.597846 8_3:+62041808 None:intergenic
TGGCTTTACACACAGAGCAA+AGG 0.599456 8_3:+62039858 None:intergenic
AAAGCATTGCCTCTGGATGG+TGG 0.600362 8_3:-62039437 Msa1300460:CDS
CCACCGGACAATCTTCTCCC+CGG 0.602241 8_3:+62041079 None:intergenic
GCCTTCGTTGGAGAAGAGAT+CGG 0.602669 8_3:+62041792 None:intergenic
TTTGGCAGGTTTCAATGACA+AGG 0.605429 8_3:-62040681 Msa1300460:intron
CGGCGAAAACTTGATTCCAC+CGG 0.606042 8_3:+62041063 None:intergenic
AGCTTCAACCCAAAGAGAGA+TGG 0.609494 8_3:+62039712 None:intergenic
ATTCCGATGAGTTGGAGAAG+AGG 0.613210 8_3:+62041835 None:intergenic
TTGCCAGACACAGCATCAAG+AGG 0.613318 8_3:+62040490 None:intergenic
TGAGAATGAGATCGGTGTCA+GGG 0.613668 8_3:+62041716 None:intergenic
GATCTCTTCATCTTCCCCGC+CGG 0.614124 8_3:+62041274 None:intergenic
AAATTATCTCGTGGAGCAAG+TGG 0.614804 8_3:+62041391 None:intergenic
ACCAGTACCGTCCAAATGTG+TGG 0.616450 8_3:-62041245 Msa1300460:CDS
GAATCCAGGATGCAATGGAA+AGG 0.616518 8_3:-62040182 Msa1300460:intron
TTGGAGAGAGTGCTAGTGGT+GGG 0.617153 8_3:-62039463 Msa1300460:CDS
GAACTGAATCCAGGATGCAA+TGG 0.617581 8_3:-62040187 Msa1300460:intron
TGAGAGAGATCCATCTCCGG+CGG 0.617931 8_3:-62041290 Msa1300460:CDS
TTAGATGTGCTAAGAGAGTG+TGG 0.620341 8_3:+62039602 None:intergenic
TGGAGTTGAGAGAATCAGAG+AGG 0.621797 8_3:+62041758 None:intergenic
ATTTGAAGCGAGTAAATGCA+TGG 0.624105 8_3:-62039391 Msa1300460:CDS
TTCATCCCAATTCTTCCTCG+CGG 0.625235 8_3:+62040958 None:intergenic
GTGTTTGGAGAGAGTGCTAG+TGG 0.625689 8_3:-62039467 Msa1300460:CDS
GTTGGTGACAGAAGGAAGAG+GGG 0.626731 8_3:+62041639 None:intergenic
AATAATTCAGGATGAAGCAG+GGG 0.629849 8_3:+62039250 None:intergenic
TGTCCTAAGATCAATCGCAC+TGG 0.634675 8_3:-62039789 Msa1300460:CDS
GCTCTTCTAGGATTCGGCGA+AGG 0.635698 8_3:+62041112 None:intergenic
AAGAAAGCATTGCCTCTGGA+TGG 0.635733 8_3:-62039440 Msa1300460:CDS
AAATGCATGGTTGGACCGCG+TGG 0.636414 8_3:-62039378 Msa1300460:CDS
ATGTTGGTGACAGAAGGAAG+AGG 0.638385 8_3:+62041637 None:intergenic
ATGGTGAAATGACGAGTGGT+AGG 0.640964 8_3:+62041550 None:intergenic
GATGTTGATATTCTGATGAA+AGG 0.641921 8_3:-62039200 Msa1300460:three_prime_UTR
AGAGATGTTGTTATACAGAG+CGG 0.642445 8_3:+62041984 None:intergenic
ACAATGGCTTCACTAACACC+AGG 0.650124 8_3:-62041922 Msa1300460:CDS
TTCACAACACAACACAACAA+TGG 0.651685 8_3:-62041938 Msa1300460:exon
GACGGCTGTCTATACCTCGA+CGG 0.652957 8_3:+62041157 None:intergenic
TGAGTTGGAGAAGAGGAGAA+CGG 0.654800 8_3:+62041842 None:intergenic
GGATACTATCTGAAGATCAG+TGG 0.655304 8_3:+62039682 None:intergenic
TCTCGAGCAGAAACCAAACT+CGG 0.655575 8_3:+62041220 None:intergenic
GTCGCCGGTGACACGTGTGT+CGG 0.656725 8_3:+62041867 None:intergenic
TTTGGAGAGAGTGCTAGTGG+TGG 0.657547 8_3:-62039464 Msa1300460:CDS
GTTCCGGCGTTCCGACGAAG+GGG 0.658890 8_3:+62041593 None:intergenic
AGAGAGATCCATCTCCGGCG+GGG 0.662479 8_3:-62041288 Msa1300460:CDS
AGGGTGAGAGAGAAGAACGT+AGG 0.672472 8_3:+62041735 None:intergenic
AATGAAAGCGATCAACGTAG+AGG 0.674194 8_3:+62041668 None:intergenic
GATCTGAATGGGAGATTGTG+CGG 0.674327 8_3:+62041468 None:intergenic
CCGCAATTATTGTTCCGTCG+AGG 0.674338 8_3:-62041171 Msa1300460:CDS
CTAAACGATCACAATCTGCA+GGG 0.675497 8_3:-62041333 Msa1300460:CDS
GCAATGGAGCCACCATCCAG+AGG 0.690113 8_3:+62039428 None:intergenic
CCGGGGAGAAGATTGTCCGG+TGG 0.691617 8_3:-62041079 Msa1300460:CDS
CTGGATCGGCGAAGACCGCG+AGG 0.692993 8_3:-62040973 Msa1300460:CDS
CCTCGACGGAACAATAATTG+CGG 0.694736 8_3:+62041171 None:intergenic
AATCAAACTCGAAGTTACGG+CGG 0.702084 8_3:+62039122 None:intergenic
GGTGAAATACGAGCTACGAG+TGG 0.708456 8_3:+62041571 None:intergenic
GAAGAGCTTCCATTTCTCCG+GGG 0.716426 8_3:-62041096 Msa1300460:CDS
CTGAATGGGAGATTGTGCGG+TGG 0.722182 8_3:+62041471 None:intergenic
GTTGGAGAAGAGGAGAACGG+TGG 0.749997 8_3:+62041845 None:intergenic
TTGAATGGTGAAATGACGAG+TGG 0.756930 8_3:+62041546 None:intergenic
GATTCCCTTTAGAAACCACG+CGG 0.796785 8_3:+62039363 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTATAT+AGG - chr8_3:62040207-62040226 Msa1300460:intron 0.0%
!!! TTTTTTTTTTTTTTTATATA+GGG - chr8_3:62040208-62040227 Msa1300460:intron 0.0%
!! AATGTATAATAAGAAATTTA+AGG - chr8_3:62040930-62040949 Msa1300460:CDS 10.0%
!! TTAATTAATGAATGCTTAAT+TGG - chr8_3:62040237-62040256 Msa1300460:intron 15.0%
!! AAATTAAAGAGAAAAATCTA+TGG - chr8_3:62041717-62041736 Msa1300460:CDS 15.0%
!! TTACAATTCATGAAAAGAAA+TGG - chr8_3:62040506-62040525 Msa1300460:CDS 20.0%
!!! AATTTAACATTCATTTCTAG+TGG - chr8_3:62040600-62040619 Msa1300460:CDS 20.0%
!! TCAGAAAACAAAAATAATTC+AGG + chr8_3:62041799-62041818 None:intergenic 20.0%
!!! TTCTAAGATTTCTGATATGT+TGG - chr8_3:62040038-62040057 Msa1300460:intron 25.0%
! AATTTAGATTGAGCTAAGAA+TGG - chr8_3:62040281-62040300 Msa1300460:intron 25.0%
!!! TGAAATGATGCTGATTTTTT+TGG - chr8_3:62040335-62040354 Msa1300460:intron 25.0%
!! AATCATTGTCATCTGATTTT+CGG + chr8_3:62040399-62040418 None:intergenic 25.0%
!!! TTTCTAGTGGTCTTATAATA+TGG - chr8_3:62040613-62040632 Msa1300460:CDS 25.0%
! GTTTATGCATTAGAAATGAT+AGG - chr8_3:62040714-62040733 Msa1300460:intron 25.0%
! GAAGGCAAATTTGATTAAAT+TGG - chr8_3:62040814-62040833 Msa1300460:intron 25.0%
! TATTATACATTCAGTAGCAT+TGG + chr8_3:62040921-62040940 None:intergenic 25.0%
! TAAAATGAAAACAATGCCAA+TGG + chr8_3:62041020-62041039 None:intergenic 25.0%
! AATGATCCATTTACTATTCA+AGG - chr8_3:62041055-62041074 Msa1300460:CDS 25.0%
! ATGATCCATTTACTATTCAA+GGG - chr8_3:62041056-62041075 Msa1300460:CDS 25.0%
! TTAAACCCTTGAATAGTAAA+TGG + chr8_3:62041064-62041083 None:intergenic 25.0%
!!! TATGTCATTTTCAGTAAGAA+GGG + chr8_3:62041376-62041395 None:intergenic 25.0%
! TTAAATCAAACTCGAAGTTA+CGG + chr8_3:62041918-62041937 None:intergenic 25.0%
ACGATTATTGAGAATGAGAT+CGG + chr8_3:62039329-62039348 None:intergenic 30.0%
CTCAATAATCGTCTTCAATT+AGG - chr8_3:62039337-62039356 Msa1300460:CDS 30.0%
ATACAAAGAAAGAGGATCAT+CGG + chr8_3:62039527-62039546 None:intergenic 30.0%
! TGTTGTTGATTGATCTGAAT+GGG + chr8_3:62039580-62039599 None:intergenic 30.0%
! TTGTTGTTGATTGATCTGAA+TGG + chr8_3:62039581-62039600 None:intergenic 30.0%
AGATGAACAATGTTCATTCA+CGG - chr8_3:62039617-62039636 Msa1300460:CDS 30.0%
!! AACCTAAAGAAAAGAGTGTT+GGG - chr8_3:62040115-62040134 Msa1300460:CDS 30.0%
!! TCAATCAATTTTGAGAACTC+AGG - chr8_3:62040158-62040177 Msa1300460:CDS 30.0%
!!! GCTTGGAAAGGTATTAATTT+TGG - chr8_3:62040576-62040595 Msa1300460:CDS 30.0%
!!! GTATTCACTGCATTTTTTAG+TGG + chr8_3:62040673-62040692 None:intergenic 30.0%
ATGATAGGTTTGTAGATGAT+AGG - chr8_3:62040729-62040748 Msa1300460:intron 30.0%
CCAAAATAATGGTCAATTCA+AGG + chr8_3:62040773-62040792 None:intergenic 30.0%
! CCTTGAATTGACCATTATTT+TGG - chr8_3:62040770-62040789 Msa1300460:intron 30.0%
!!! TGACCATTATTTTGGTGATT+TGG - chr8_3:62040778-62040797 Msa1300460:intron 30.0%
!! TTTGGCTCTATTTGATTAGA+AGG - chr8_3:62040796-62040815 Msa1300460:intron 30.0%
! TTTTATTGTGAACTGAATCC+AGG - chr8_3:62040838-62040857 Msa1300460:intron 30.0%
!! TTTGACCTGGTTTTTAACAT+TGG - chr8_3:62040964-62040983 Msa1300460:CDS 30.0%
TATACCAAAGTTAAGTCCAT+TGG - chr8_3:62041001-62041020 Msa1300460:CDS 30.0%
CTTGTTTACTTCCTCTTTAA+TGG - chr8_3:62041093-62041112 Msa1300460:CDS 30.0%
GTAAAAAACTTGTCTATGGT+TGG + chr8_3:62041213-62041232 None:intergenic 30.0%
GATGGTAAAAAACTTGTCTA+TGG + chr8_3:62041217-62041236 None:intergenic 30.0%
!!! CTATGTCATTTTCAGTAAGA+AGG + chr8_3:62041377-62041396 None:intergenic 30.0%
AAATGGAATGAAAGAAACAC+TGG - chr8_3:62041464-62041483 Msa1300460:CDS 30.0%
ATGTGACAAAACAATAGCAA+TGG + chr8_3:62041625-62041644 None:intergenic 30.0%
AAATAATTCAGGATGAAGCA+GGG + chr8_3:62041788-62041807 None:intergenic 30.0%
AAAATAATTCAGGATGAAGC+AGG + chr8_3:62041789-62041808 None:intergenic 30.0%
TTTCTGATTTACTTTGACTG+TGG - chr8_3:62041812-62041831 Msa1300460:CDS 30.0%
GATGTTGATATTCTGATGAA+AGG - chr8_3:62041834-62041853 Msa1300460:CDS 30.0%
! CTAGCTTATGAAGTTGATTA+GGG - chr8_3:62041887-62041906 Msa1300460:CDS 30.0%
ATTTAACCATTGAGTCATCA+TGG + chr8_3:62041961-62041980 None:intergenic 30.0%
AGAGATGTTGTTATACAGAG+CGG + chr8_3:62039053-62039072 None:intergenic 35.0%
TTCACAACACAACACAACAA+TGG - chr8_3:62039096-62039115 Msa1300460:three_prime_UTR 35.0%
CTTGTAGGAGTTTAAGGATT+AGG + chr8_3:62039138-62039157 None:intergenic 35.0%
TCATTGCTTGTAGGAGTTTA+AGG + chr8_3:62039144-62039163 None:intergenic 35.0%
!! GGAATCTGATAATGGTTGAA+TGG + chr8_3:62039506-62039525 None:intergenic 35.0%
AAGATTTCTGATATGTTGGC+TGG - chr8_3:62040042-62040061 Msa1300460:intron 35.0%
TGGGATGAACAAAATGTTGA+AGG - chr8_3:62040090-62040109 Msa1300460:intron 35.0%
! GAACCTAAAGAAAAGAGTGT+TGG - chr8_3:62040114-62040133 Msa1300460:CDS 35.0%
!!! ATGATGCTGATTTTTTTGGC+AGG - chr8_3:62040339-62040358 Msa1300460:intron 35.0%
!! CATGAAAAGAAATGGACTGA+TGG - chr8_3:62040514-62040533 Msa1300460:CDS 35.0%
!!! TTCACTGCATTTTTTAGTGG+TGG + chr8_3:62040670-62040689 None:intergenic 35.0%
GAGCCAAATCACCAAAATAA+TGG + chr8_3:62040784-62040803 None:intergenic 35.0%
CAGTTCCAATGTTAAAAACC+AGG + chr8_3:62040972-62040991 None:intergenic 35.0%
! AATGCCAATGGACTTAACTT+TGG + chr8_3:62041008-62041027 None:intergenic 35.0%
ATTCATGTCAGCCATTAAAG+AGG + chr8_3:62041107-62041126 None:intergenic 35.0%
! TATGGTTGGCAAAGGATTTT+TGG + chr8_3:62041199-62041218 None:intergenic 35.0%
TCTTAGGACATCATCATAGA+TGG + chr8_3:62041235-62041254 None:intergenic 35.0%
ATGGACTTTGATTGACATGT+TGG + chr8_3:62041306-62041325 None:intergenic 35.0%
AATCAAAGTCCATCTCTCTT+TGG - chr8_3:62041313-62041332 Msa1300460:CDS 35.0%
ATCAAAGTCCATCTCTCTTT+GGG - chr8_3:62041314-62041333 Msa1300460:CDS 35.0%
ACATCTAAGAGTCAAGGAAA+TGG - chr8_3:62041447-62041466 Msa1300460:CDS 35.0%
TACTGTCAGAAATGCAAATG+TGG - chr8_3:62041502-62041521 Msa1300460:CDS 35.0%
CACTTTAAATCCTGCTTCAA+GGG + chr8_3:62041550-62041569 None:intergenic 35.0%
ACACTTTAAATCCTGCTTCA+AGG + chr8_3:62041551-62041570 None:intergenic 35.0%
! GAAGCAGGATTTAAAGTGTT+TGG - chr8_3:62041552-62041571 Msa1300460:CDS 35.0%
! ATTTGAAGCGAGTAAATGCA+TGG - chr8_3:62041643-62041662 Msa1300460:CDS 35.0%
AATAATTCAGGATGAAGCAG+GGG + chr8_3:62041787-62041806 None:intergenic 35.0%
! GCTAGCTTATGAAGTTGATT+AGG - chr8_3:62041886-62041905 Msa1300460:CDS 35.0%
AACAAACCATGATGACTCAA+TGG - chr8_3:62041952-62041971 Msa1300460:five_prime_UTR 35.0%
! TTAGAGCTTGTTTGTCAATG+TGG - chr8_3:62041981-62042000 Msa1300460:five_prime_UTR 35.0%
TGAATTGAGTGTGTGTGTGT+GGG + chr8_3:62039080-62039099 None:intergenic 40.0%
AATGAAAGCGATCAACGTAG+AGG + chr8_3:62039369-62039388 None:intergenic 40.0%
TTGAATGGTGAAATGACGAG+TGG + chr8_3:62039491-62039510 None:intergenic 40.0%
GGATCATCGGAATCTGATAA+TGG + chr8_3:62039514-62039533 None:intergenic 40.0%
GTGGAGAGATACAAAGAAAG+AGG + chr8_3:62039535-62039554 None:intergenic 40.0%
AAATTATCTCGTGGAGCAAG+TGG + chr8_3:62039646-62039665 None:intergenic 40.0%
CTAAACGATCACAATCTGCA+GGG - chr8_3:62039701-62039720 Msa1300460:CDS 40.0%
!! ATGGAAGCTCTTCTAGGATT+CGG + chr8_3:62039931-62039950 None:intergenic 40.0%
TAGAAGAGCTTCCATTTCTC+CGG - chr8_3:62039936-62039955 Msa1300460:intron 40.0%
TTCTACTGCGAAGAAGAAGA+TGG - chr8_3:62040005-62040024 Msa1300460:intron 40.0%
! TTCTGATATGTTGGCTGGAT+CGG - chr8_3:62040047-62040066 Msa1300460:intron 40.0%
! GACCCAACACTCTTTTCTTT+AGG + chr8_3:62040120-62040139 None:intergenic 40.0%
!! AGAGTGTTGGGTCTAAAACT+AGG - chr8_3:62040127-62040146 Msa1300460:CDS 40.0%
!! GAGTGTTGGGTCTAAAACTA+GGG - chr8_3:62040128-62040147 Msa1300460:CDS 40.0%
TTTGGCAGGTTTCAATGACA+AGG - chr8_3:62040353-62040372 Msa1300460:intron 40.0%
CTCTTCTCCTCAAAGTTGTT+TGG - chr8_3:62040447-62040466 Msa1300460:intron 40.0%
TTCTCCTCAAAGTTGTTTGG+AGG - chr8_3:62040450-62040469 Msa1300460:intron 40.0%
TCTACCTCCAAACAACTTTG+AGG + chr8_3:62040457-62040476 None:intergenic 40.0%
GTAGAGAAATCCAAGTTTGC+AGG - chr8_3:62040472-62040491 Msa1300460:CDS 40.0%
AAATCCAAGTTTGCAGGTCT+TGG - chr8_3:62040478-62040497 Msa1300460:CDS 40.0%
CAAACTTTCAAGGCTTGGAA+AGG - chr8_3:62040564-62040583 Msa1300460:CDS 40.0%
TAGGTTTGTAGATGATAGGC+TGG - chr8_3:62040733-62040752 Msa1300460:intron 40.0%
GGTAACGATTTCATTTGACC+TGG - chr8_3:62040951-62040970 Msa1300460:CDS 40.0%
AACTTGTCTATGGTTGGCAA+AGG + chr8_3:62041207-62041226 None:intergenic 40.0%
GGATACTATCTGAAGATCAG+TGG + chr8_3:62041355-62041374 None:intergenic 40.0%
CTCCATCAGAACTTCAGAAA+AGG - chr8_3:62041400-62041419 Msa1300460:CDS 40.0%
!!! AGCCTTTTCTGAAGTTCTGA+TGG + chr8_3:62041405-62041424 None:intergenic 40.0%
TTAGATGTGCTAAGAGAGTG+TGG + chr8_3:62041435-62041454 None:intergenic 40.0%
CTTAGCACATCTAAGAGTCA+AGG - chr8_3:62041441-62041460 Msa1300460:CDS 40.0%
ATGAAAGAAACACTGGAGCT+TGG - chr8_3:62041471-62041490 Msa1300460:CDS 40.0%
!!! GGTTTTGTTATCCAGCATGT+AGG - chr8_3:62041738-62041757 Msa1300460:CDS 40.0%
! CAAAAGTTGATCCTACATGC+TGG + chr8_3:62041752-62041771 None:intergenic 40.0%
AATCAAACTCGAAGTTACGG+CGG + chr8_3:62041915-62041934 None:intergenic 40.0%
GTGAATTGAGTGTGTGTGTG+TGG + chr8_3:62039081-62039100 None:intergenic 45.0%
ACAATGGCTTCACTAACACC+AGG - chr8_3:62039112-62039131 Msa1300460:three_prime_UTR 45.0%
AGGAGTTTAAGGATTAGGCC+TGG + chr8_3:62039133-62039152 None:intergenic 45.0%
! TGTCGGTGTTCATTGCTTGT+AGG + chr8_3:62039153-62039172 None:intergenic 45.0%
! TGAGTTGGAGAAGAGGAGAA+CGG + chr8_3:62039195-62039214 None:intergenic 45.0%
TCTCCTCTTCTCCAACTCAT+CGG - chr8_3:62039196-62039215 Msa1300460:three_prime_UTR 45.0%
! ATTCCGATGAGTTGGAGAAG+AGG + chr8_3:62039202-62039221 None:intergenic 45.0%
GTTGAGAAAGAAGCCTTCGT+TGG + chr8_3:62039257-62039276 None:intergenic 45.0%
TGGAGTTGAGAGAATCAGAG+AGG + chr8_3:62039279-62039298 None:intergenic 45.0%
!! TGAGAATGAGATCGGTGTCA+GGG + chr8_3:62039321-62039340 None:intergenic 45.0%
! TTGAGAATGAGATCGGTGTC+AGG + chr8_3:62039322-62039341 None:intergenic 45.0%
!! TGTTGGTGACAGAAGGAAGA+GGG + chr8_3:62039399-62039418 None:intergenic 45.0%
!! ATGTTGGTGACAGAAGGAAG+AGG + chr8_3:62039400-62039419 None:intergenic 45.0%
ATGGTGAAATGACGAGTGGT+AGG + chr8_3:62039487-62039506 None:intergenic 45.0%
GATCTGAATGGGAGATTGTG+CGG + chr8_3:62039569-62039588 None:intergenic 45.0%
!! GGCGTTGGTAAATTATCTCG+TGG + chr8_3:62039655-62039674 None:intergenic 45.0%
GATGAAAATCTCTTCGGCGT+TGG + chr8_3:62039670-62039689 None:intergenic 45.0%
! GCCGAAGAGATTTTCATCTC+CGG - chr8_3:62039672-62039691 Msa1300460:CDS 45.0%
GCCGGAGATGAAAATCTCTT+CGG + chr8_3:62039676-62039695 None:intergenic 45.0%
GCTAAACGATCACAATCTGC+AGG - chr8_3:62039700-62039719 Msa1300460:CDS 45.0%
TCACAATCTGCAGGGAAGTT+TGG - chr8_3:62039709-62039728 Msa1300460:CDS 45.0%
CAAACTCGGAACCACACATT+TGG + chr8_3:62039803-62039822 None:intergenic 45.0%
CAAATGTGTGGTTCCGAGTT+TGG - chr8_3:62039801-62039820 Msa1300460:CDS 45.0%
TCTCGAGCAGAAACCAAACT+CGG + chr8_3:62039817-62039836 None:intergenic 45.0%
TTTCTGCTCGAGAGGACAAT+CGG - chr8_3:62039824-62039843 Msa1300460:CDS 45.0%
AGGACAATCGGAAGGTTTCA+CGG - chr8_3:62039836-62039855 Msa1300460:CDS 45.0%
CCTCGACGGAACAATAATTG+CGG + chr8_3:62039866-62039885 None:intergenic 45.0%
GGAGAAATGGAAGCTCTTCT+AGG + chr8_3:62039937-62039956 None:intergenic 45.0%
AGAAGAGCTTCCATTTCTCC+GGG - chr8_3:62039937-62039956 Msa1300460:intron 45.0%
CGAAGAAGAAGATGGTAGCT+GGG - chr8_3:62040013-62040032 Msa1300460:intron 45.0%
TTCATCCCAATTCTTCCTCG+CGG + chr8_3:62040079-62040098 None:intergenic 45.0%
CTGTGTCTGGCAAACTTTCA+AGG - chr8_3:62040554-62040573 Msa1300460:CDS 45.0%
TCTGGCAAACTTTCAAGGCT+TGG - chr8_3:62040559-62040578 Msa1300460:CDS 45.0%
TTTGTAGATGATAGGCTGGC+TGG - chr8_3:62040737-62040756 Msa1300460:intron 45.0%
GAACTGAATCCAGGATGCAA+TGG - chr8_3:62040847-62040866 Msa1300460:intron 45.0%
GAATCCAGGATGCAATGGAA+AGG - chr8_3:62040852-62040871 Msa1300460:intron 45.0%
CTTTCCTTTCCATTGCATCC+TGG + chr8_3:62040859-62040878 None:intergenic 45.0%
GTCTGAAAACATGCTGAAGC+AGG + chr8_3:62041157-62041176 None:intergenic 45.0%
! TGGCTTTACACACAGAGCAA+AGG + chr8_3:62041179-62041198 None:intergenic 45.0%
TGTCCTAAGATCAATCGCAC+TGG - chr8_3:62041245-62041264 Msa1300460:CDS 45.0%
AGCTTCAACCCAAAGAGAGA+TGG + chr8_3:62041325-62041344 None:intergenic 45.0%
!! TCTTTGGGTTGAAGCTGCTT+TGG - chr8_3:62041329-62041348 Msa1300460:CDS 45.0%
GTTGAAGAATCCCTTGAAGC+AGG - chr8_3:62041537-62041556 Msa1300460:CDS 45.0%
!! AAGAAAGCATTGCCTCTGGA+TGG - chr8_3:62041594-62041613 Msa1300460:CDS 45.0%
GAAGCGAGTAAATGCATGGT+TGG - chr8_3:62041647-62041666 Msa1300460:CDS 45.0%
! GATTCCCTTTAGAAACCACG+CGG + chr8_3:62041674-62041693 None:intergenic 45.0%
CGGGTACAATTCCGATGAGT+TGG + chr8_3:62039210-62039229 None:intergenic 50.0%
AGATCGGAGCTGGATAAAGC+GGG + chr8_3:62039229-62039248 None:intergenic 50.0%
GAGATCGGAGCTGGATAAAG+CGG + chr8_3:62039230-62039249 None:intergenic 50.0%
TCCGATCTCTTCTCCAACGA+AGG - chr8_3:62039241-62039260 Msa1300460:exon 50.0%
GCCTTCGTTGGAGAAGAGAT+CGG + chr8_3:62039245-62039264 None:intergenic 50.0%
GTGAGAGAGAAGAACGTAGG+TGG + chr8_3:62039299-62039318 None:intergenic 50.0%
AGGGTGAGAGAGAAGAACGT+AGG + chr8_3:62039302-62039321 None:intergenic 50.0%
AGCGATCAACGTAGAGGAAC+TGG + chr8_3:62039363-62039382 None:intergenic 50.0%
!! GTTGGTGACAGAAGGAAGAG+GGG + chr8_3:62039398-62039417 None:intergenic 50.0%
!! GGACGAATGTTGGTGACAGA+AGG + chr8_3:62039406-62039425 None:intergenic 50.0%
ATACGAGCTACGAGTGGTTC+CGG + chr8_3:62039460-62039479 None:intergenic 50.0%
GGTGAAATACGAGCTACGAG+TGG + chr8_3:62039466-62039485 None:intergenic 50.0%
AGATTGTGCGGTGGTTGTGT+TGG + chr8_3:62039557-62039576 None:intergenic 50.0%
TGTGATCGTTTAGCAGTCGC+CGG + chr8_3:62039694-62039713 None:intergenic 50.0%
TGCTGAGAGAGATCCATCTC+CGG - chr8_3:62039741-62039760 Msa1300460:CDS 50.0%
ACCAGTACCGTCCAAATGTG+TGG - chr8_3:62039789-62039808 Msa1300460:CDS 50.0%
ACCACACATTTGGACGGTAC+TGG + chr8_3:62039793-62039812 None:intergenic 50.0%
CTCGGAACCACACATTTGGA+CGG + chr8_3:62039799-62039818 None:intergenic 50.0%
! GAGTTTGGTTTCTGCTCGAG+AGG - chr8_3:62039816-62039835 Msa1300460:CDS 50.0%
GGACAATCGGAAGGTTTCAC+GGG - chr8_3:62039837-62039856 Msa1300460:CDS 50.0%
CCGCAATTATTGTTCCGTCG+AGG - chr8_3:62039863-62039882 Msa1300460:CDS 50.0%
GAAGAGCTTCCATTTCTCCG+GGG - chr8_3:62039938-62039957 Msa1300460:intron 50.0%
CAATCTTCTCCCCGGAGAAA+TGG + chr8_3:62039950-62039969 None:intergenic 50.0%
CGGCGAAAACTTGATTCCAC+CGG + chr8_3:62039974-62039993 None:intergenic 50.0%
! CGGTGGAATCAAGTTTTCGC+CGG - chr8_3:62039972-62039991 Msa1300460:intron 50.0%
!! ATCAAGTTTTCGCCGGCTGT+TGG - chr8_3:62039979-62039998 Msa1300460:intron 50.0%
GCAGTAGAATCTCCAACAGC+CGG + chr8_3:62039994-62040013 None:intergenic 50.0%
GCGAAGAAGAAGATGGTAGC+TGG - chr8_3:62040012-62040031 Msa1300460:intron 50.0%
GAAGACCGCGAGGAAGAATT+GGG - chr8_3:62040071-62040090 Msa1300460:intron 50.0%
TCCAAGTTTGCAGGTCTTGG+TGG - chr8_3:62040481-62040500 Msa1300460:CDS 50.0%
GTTCCTCTTGATGCTGTGTC+TGG - chr8_3:62040541-62040560 Msa1300460:CDS 50.0%
TTGCCAGACACAGCATCAAG+AGG + chr8_3:62040547-62040566 None:intergenic 50.0%
TGCTGCTGCAGCATTAGAAG+AGG - chr8_3:62040895-62040914 Msa1300460:CDS 50.0%
CAGCCAGTGCGATTGATCTT+AGG + chr8_3:62041251-62041270 None:intergenic 50.0%
!! GTGTTTGGAGAGAGTGCTAG+TGG - chr8_3:62041567-62041586 Msa1300460:CDS 50.0%
!! TTTGGAGAGAGTGCTAGTGG+TGG - chr8_3:62041570-62041589 Msa1300460:CDS 50.0%
!! TTGGAGAGAGTGCTAGTGGT+GGG - chr8_3:62041571-62041590 Msa1300460:CDS 50.0%
!! TGGGAAGAAAGCATTGCCTC+TGG - chr8_3:62041590-62041609 Msa1300460:CDS 50.0%
!! AAAGCATTGCCTCTGGATGG+TGG - chr8_3:62041597-62041616 Msa1300460:CDS 50.0%
TTGGACCGCGTGGTTTCTAA+AGG - chr8_3:62041666-62041685 Msa1300460:CDS 50.0%
TGGACCGCGTGGTTTCTAAA+GGG - chr8_3:62041667-62041686 Msa1300460:CDS 50.0%
AACACCGACACACGTGTCAC+CGG - chr8_3:62039163-62039182 Msa1300460:three_prime_UTR 55.0%
GTTGGAGAAGAGGAGAACGG+TGG + chr8_3:62039192-62039211 None:intergenic 55.0%
GTTGGAGAAGAGATCGGAGC+TGG + chr8_3:62039239-62039258 None:intergenic 55.0%
TGACAGAAGGAAGAGGGGTG+TGG + chr8_3:62039393-62039412 None:intergenic 55.0%
TTGTGCGGTGGTTGTGTTGG+TGG + chr8_3:62039554-62039573 None:intergenic 55.0%
CTGAATGGGAGATTGTGCGG+TGG + chr8_3:62039566-62039585 None:intergenic 55.0%
TGAGAGAGATCCATCTCCGG+CGG - chr8_3:62039744-62039763 Msa1300460:CDS 55.0%
GATCTCTTCATCTTCCCCGC+CGG + chr8_3:62039763-62039782 None:intergenic 55.0%
TGCTCGAGAGGACAATCGGA+AGG - chr8_3:62039828-62039847 Msa1300460:CDS 55.0%
GACGGCTGTCTATACCTCGA+CGG + chr8_3:62039880-62039899 None:intergenic 55.0%
!! GCTCTTCTAGGATTCGGCGA+AGG + chr8_3:62039925-62039944 None:intergenic 55.0%
TCTCCGGGGAGAAGATTGTC+CGG - chr8_3:62039952-62039971 Msa1300460:intron 55.0%
CGAAGACCGCGAGGAAGAAT+TGG - chr8_3:62040070-62040089 Msa1300460:intron 55.0%
GCCACCAAGACCTGCAAACT+TGG + chr8_3:62040485-62040504 None:intergenic 55.0%
AAATGCATGGTTGGACCGCG+TGG - chr8_3:62041656-62041675 Msa1300460:CDS 55.0%
AAGAGGAGAACGGTGGTCGC+CGG + chr8_3:62039185-62039204 None:intergenic 60.0%
CGTGGGGAGAGGACGAATGT+TGG + chr8_3:62039416-62039435 None:intergenic 60.0%
GAGAGAGATCCATCTCCGGC+GGG - chr8_3:62039745-62039764 Msa1300460:CDS 60.0%
AGAGAGATCCATCTCCGGCG+GGG - chr8_3:62039746-62039765 Msa1300460:CDS 60.0%
TTCATCTTCCCCGCCGGAGA+TGG + chr8_3:62039757-62039776 None:intergenic 60.0%
TAGACAGCCGTCTCCGACGA+CGG - chr8_3:62039888-62039907 Msa1300460:intron 60.0%
TTCCTTGCCGTCGTCGGAGA+CGG + chr8_3:62039898-62039917 None:intergenic 60.0%
CCACCGGACAATCTTCTCCC+CGG + chr8_3:62039958-62039977 None:intergenic 60.0%
GCAATGGAGCCACCATCCAG+AGG + chr8_3:62041609-62041628 None:intergenic 60.0%
GTCGCCGGTGACACGTGTGT+CGG + chr8_3:62039170-62039189 None:intergenic 65.0%
GTTCCGGCGTTCCGACGAAG+GGG + chr8_3:62039444-62039463 None:intergenic 65.0%
GGTTCCGGCGTTCCGACGAA+GGG + chr8_3:62039445-62039464 None:intergenic 65.0%
TGGTTCCGGCGTTCCGACGA+AGG + chr8_3:62039446-62039465 None:intergenic 65.0%
GGCTGCTTCCTTGCCGTCGT+CGG + chr8_3:62039904-62039923 None:intergenic 65.0%
CCGGGGAGAAGATTGTCCGG+TGG - chr8_3:62039955-62039974 Msa1300460:intron 65.0%
CCACCCCTTCGTCGGAACGC+CGG - chr8_3:62039438-62039457 Msa1300460:CDS 70.0%
AGCCGTCTCCGACGACGGCA+AGG - chr8_3:62039893-62039912 Msa1300460:intron 70.0%
CTGGATCGGCGAAGACCGCG+AGG - chr8_3:62040061-62040080 Msa1300460:intron 70.0%
AAGGGGTGGCGCGTGGGGAG+AGG + chr8_3:62039427-62039446 None:intergenic 75.0%
CGACGAAGGGGTGGCGCGTG+GGG + chr8_3:62039432-62039451 None:intergenic 75.0%
CCGACGAAGGGGTGGCGCGT+GGG + chr8_3:62039433-62039452 None:intergenic 75.0%
CCCACGCGCCACCCCTTCGT+CGG - chr8_3:62039430-62039449 Msa1300460:CDS 75.0%
TCCGACGAAGGGGTGGCGCG+TGG + chr8_3:62039434-62039453 None:intergenic 75.0%
CCGGCGTTCCGACGAAGGGG+TGG + chr8_3:62039441-62039460 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 62039033 62042023 62039033 ID=Msa1300460;Name=Msa1300460
chr8_3 mRNA 62039033 62042023 62039033 ID=Msa1300460-mRNA-1;Parent=Msa1300460;Name=Msa1300460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=82|1|1|1|1|1|4|223|672
chr8_3 exon 62039033 62039892 62039033 ID=Msa1300460-mRNA-1:exon:18422;Parent=Msa1300460-mRNA-1
chr8_3 exon 62040105 62040196 62040105 ID=Msa1300460-mRNA-1:exon:18421;Parent=Msa1300460-mRNA-1
chr8_3 exon 62040471 62040695 62040471 ID=Msa1300460-mRNA-1:exon:18420;Parent=Msa1300460-mRNA-1
chr8_3 exon 62040877 62042023 62040877 ID=Msa1300460-mRNA-1:exon:18419;Parent=Msa1300460-mRNA-1
chr8_3 five_prime_UTR 62041942 62042023 62041942 ID=Msa1300460-mRNA-1:five_prime_utr;Parent=Msa1300460-mRNA-1
chr8_3 CDS 62040877 62041941 62040877 ID=Msa1300460-mRNA-1:cds;Parent=Msa1300460-mRNA-1
chr8_3 CDS 62040471 62040695 62040471 ID=Msa1300460-mRNA-1:cds;Parent=Msa1300460-mRNA-1
chr8_3 CDS 62040105 62040196 62040105 ID=Msa1300460-mRNA-1:cds;Parent=Msa1300460-mRNA-1
chr8_3 CDS 62039256 62039892 62039256 ID=Msa1300460-mRNA-1:cds;Parent=Msa1300460-mRNA-1
chr8_3 three_prime_UTR 62039033 62039255 62039033 ID=Msa1300460-mRNA-1:three_prime_utr;Parent=Msa1300460-mRNA-1
Gene Sequence

>Msa1300460

ATGGCTTCACTAACACCAGGCCTAATCCTTAAACTCCTACAAGCAATGAACACCGACACACGTGTCACCGGCGACCACCGTTCTCCTCTTCTCCAACTCATCGGAATTGTACCCGCTTTATCCAGCTCCGATCTCTTCTCCAACGAAGGCTTCTTTCTCAACCTCTCTGATTCTCTCAACTCCACCTACGTTCTTCTCTCTCACCCTGACACCGATCTCATTCTCAATAATCGTCTTCAATTAGGCCAGTTCCTCTACGTTGATCGCTTTCATTTCCACACCCCTCTTCCTTCTGTCACCAACATTCGTCCTCTCCCCACGCGCCACCCCTTCGTCGGAACGCCGGAACCACTCGTAGCTCGTATTTCACCTACCACTCGTCATTTCACCATTCAACCATTATCAGATTCCGATGATCCTCTTTCTTTGTATCTCTCCACCAACACAACCACCGCACAATCTCCCATTCAGATCAATCAACAACAACAACAGCAGCAGAAGAAGATGAACAATGTTCATTCACGGCAACCACTTGCTCCACGAGATAATTTACCAACGCCGAAGAGATTTTCATCTCCGGCGACTGCTAAACGATCACAATCTGCAGGGAAGTTTGGTAAAGTTTCTGCTGAGAGAGATCCATCTCCGGCGGGGAAGATGAAGAGATCTTCTTCACCAGTACCGTCCAAATGTGTGGTTCCGAGTTTGGTTTCTGCTCGAGAGGACAATCGGAAGGTTTCACGGGAAGCCGCAATTATTGTTCCGTCGAGGTATAGACAGCCGTCTCCGACGACGGCAAGGAAGCAGCCTTCGCCGAATCCTAGAAGAGCTTCCATTTCTCCGGGGAGAAGATTGTCCGGTGGAATCAAGTTTTCGCCGGCTGTTGGAGATTCTACTGCGAAGAAGAAGATGGTAGCTGGGATTTCTAAGATTTCTGATATGTTGGCTGGATCGGCGAAGACCGCGAGGAAGAATTGGGATGAACAAAATGTTGAAGGTGAACCTAAAGAAAAGAGTGTTGGGTCTAAAACTAGGGTTGATTCTCAATCAATTTTGAGAACTCAGGTTTCAATGACAAGGAGATTGAGTGATGTGAAAAGCCGAAAATCAGATGACAATGATTCTTCTTCTATAGATGAGAATACTATAGACTCTTCTCCTCAAAGTTGTTTGGAGGTAGAGAAATCCAAGTTTGCAGGTCTTGGTGGCATTACAATTCATGAAAAGAAATGGACTGATGGAAGTGTTCCTCTTGATGCTGTGTCTGGCAAACTTTCAAGGCTTGGAAAGGATGCAATGGAAAGGAAAGCTCTTGCTTCTGCAGCTGCTGCTGCAGCATTAGAAGAGGCCAATGCTACTGAATGTATAATAAGAAATTTAAGCATGTTTTCAGACCTTTGCTCTGTGTGTAAAGCCAAAAATCCTTTGCCAACCATAGACAAGTTTTTTACCATCTATGATGATGTCCTAAGATCAATCGCACTGGCTGAATCTGTTGCTAATAGTCACGATGACAGTATTCCAACATGTCAATCAAAGTCCATCTCTCTTTGGGTTGAAGCTGCTTTGGCCACTGATCTTCAGATAGTATCCCTTCTTACTGAAAATGACATAGATACTCCATCAGAACTTCAGAAAAGGCTGTCAAGACCACACTCTCTTAGCACATCTAAGAGTCAAGGAAATGGAATGAAAGAAACACTGGAGCTTGGAACAAGTTTACTGTCAGAAATGCAAATGTGGTTTCTACGCTTTGTTGAAGAATCCCTTGAAGCAGGATTTAAAGTGTTTGGAGAGAGTGCTAGTGGTGGGAAGAAAGCATTGCCTCTGGATGGTGGCTCCATTGCTATTGTTTTGTCACATTTGAAGCGAGTAAATGCATGGTTGGACCGCGTGGTTTCTAAAGGGAATCACTCATTGACAGATAAGATTGAGAAATTAAAGAGAAAAATCTATGGTTTTGTTATCCAGCATGTAGGATCAACTTTTGATAACAAAGCTTCCCCTGCTTCATCCTGA
Protein sequence

>Msa1300460

MASLTPGLILKLLQAMNTDTRVTGDHRSPLLQLIGIVPALSSSDLFSNEGFFLNLSDSLNSTYVLLSHPDTDLILNNRLQLGQFLYVDRFHFHTPLPSVTNIRPLPTRHPFVGTPEPLVARISPTTRHFTIQPLSDSDDPLSLYLSTNTTTAQSPIQINQQQQQQQKKMNNVHSRQPLAPRDNLPTPKRFSSPATAKRSQSAGKFGKVSAERDPSPAGKMKRSSSPVPSKCVVPSLVSAREDNRKVSREAAIIVPSRYRQPSPTTARKQPSPNPRRASISPGRRLSGGIKFSPAVGDSTAKKKMVAGISKISDMLAGSAKTARKNWDEQNVEGEPKEKSVGSKTRVDSQSILRTQVSMTRRLSDVKSRKSDDNDSSSIDENTIDSSPQSCLEVEKSKFAGLGGITIHEKKWTDGSVPLDAVSGKLSRLGKDAMERKALASAAAAAALEEANATECIIRNLSMFSDLCSVCKAKNPLPTIDKFFTIYDDVLRSIALAESVANSHDDSIPTCQSKSISLWVEAALATDLQIVSLLTENDIDTPSELQKRLSRPHSLSTSKSQGNGMKETLELGTSLLSEMQMWFLRFVEESLEAGFKVFGESASGGKKALPLDGGSIAIVLSHLKRVNAWLDRVVSKGNHSLTDKIEKLKRKIYGFVIQHVGSTFDNKASPASS*