AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146990 MtrunA17_Chr1g0156371 98.427 1081 17 0 1 1081 1 1081 0.0 2182
Msa0146990 MtrunA17_Chr3g0142411 69.847 1111 290 9 1 1081 1 1096 0.0 1451
Msa0146990 MtrunA17_Chr5g0405291 49.216 510 223 7 1 503 1 481 6.80e-126 402
Msa0146990 MtrunA17_Chr5g0405291 37.121 264 143 6 835 1081 509 766 6.31e-35 143
Msa0146990 MtrunA17_Chr4g0053121 36.454 502 264 8 1 500 1 449 1.79e-65 241
Msa0146990 MtrunA17_Chr1g0159951 43.348 233 107 2 67 299 136 343 8.14e-43 169
Msa0146990 MtrunA17_Chr8g0384881 39.542 306 145 7 1 299 1 273 6.66e-41 160
Msa0146990 MtrunA17_Chr3g0130811 41.150 226 110 3 74 299 55 257 1.22e-34 142
Msa0146990 MtrunA17_Chr5g0401911 32.567 261 146 4 1 260 1 232 1.79e-28 123
Msa0146990 MtrunA17_Chr4g0044561 31.436 369 230 8 138 500 82 433 2.42e-28 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146990 AT1G19835.6 51.135 1101 396 19 1 1078 1 982 0.0 921
Msa0146990 AT1G19835.5 51.135 1101 396 19 1 1078 1 982 0.0 921
Msa0146990 AT1G19835.3 51.135 1101 396 19 1 1078 1 982 0.0 921
Msa0146990 AT1G19835.1 51.135 1101 396 19 1 1078 1 982 0.0 921
Msa0146990 AT1G19835.4 51.135 1101 396 19 1 1078 1 982 0.0 921
Msa0146990 AT1G19835.2 51.135 1101 396 19 1 1078 1 982 0.0 921
Msa0146990 AT1G47900.2 48.689 1144 424 24 1 1076 1 1049 0.0 894
Msa0146990 AT1G47900.3 48.604 1146 424 25 1 1076 1 1051 0.0 890
Msa0146990 AT1G47900.1 48.604 1146 424 25 1 1076 1 1051 0.0 890
Msa0146990 AT4G36120.2 52.569 506 218 5 3 498 4 497 6.18e-154 484
Msa0146990 AT4G36120.1 52.569 506 218 5 3 498 4 497 6.18e-154 484
Msa0146990 AT2G23360.1 35.893 521 248 13 1 515 1 441 3.48e-65 238
Msa0146990 AT3G05270.3 38.538 301 138 8 1 299 1 256 2.14e-37 150
Msa0146990 AT3G05270.2 38.538 301 138 8 1 299 1 256 2.14e-37 150
Msa0146990 AT3G05270.1 38.538 301 138 8 1 299 1 256 2.14e-37 150
Msa0146990 AT1G77580.1 40.351 228 101 3 71 298 24 216 1.17e-34 142
Msa0146990 AT1G77580.2 40.351 228 101 3 71 298 58 250 1.36e-34 143
Msa0146990 AT1G77580.3 40.351 228 101 3 71 298 58 250 1.36e-34 143
Msa0146990 AT1G77580.4 40.351 228 101 3 71 298 24 216 1.53e-34 142
Msa0146990 AT1G21810.3 36.667 210 91 1 89 298 13 180 3.57e-28 122
Msa0146990 AT1G21810.1 36.667 210 91 1 89 298 13 180 3.57e-28 122
Msa0146990 AT2G24470.1 54.930 71 32 0 162 232 22 92 2.62e-16 75.9
Msa0146990 AT3G19370.3 42.991 107 61 0 196 302 156 262 1.87e-15 81.6
Msa0146990 AT3G19370.1 42.991 107 61 0 196 302 156 262 1.87e-15 81.6
Msa0146990 AT3G19370.2 42.991 107 61 0 196 302 156 262 1.87e-15 81.6

Find 239 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAGGTGGTTTGGGTTTA+AGG 0.057296 1_4:-6860731 None:intergenic
TAAGAAATTCATTATCTTTC+TGG 0.062149 1_4:-6863043 None:intergenic
TCAGTTCATGTTCTTCTTTC+AGG 0.092243 1_4:-6862449 None:intergenic
TCCACCTGATCCTGCAAATT+TGG 0.097144 1_4:-6865330 None:intergenic
TCTTGATCTGTCTCATTTCT+TGG 0.164294 1_4:+6864135 Msa0146990:CDS
ATAAAATATATTACCATTAA+AGG 0.171660 1_4:+6865971 Msa0146990:three_prime_UTR
AAGGATGATCCTGAAGATTT+TGG 0.192360 1_4:+6863875 Msa0146990:CDS
TTCATATGGATGGGAGATTT+TGG 0.201783 1_4:-6863230 None:intergenic
ATTTAATATCCTTGGTTATA+AGG 0.215009 1_4:+6864177 Msa0146990:CDS
GTCTTATTGTTTGAAGTAAA+TGG 0.215951 1_4:-6863515 None:intergenic
TAATAACCGCACCCCTTTAA+TGG 0.221743 1_4:-6865984 None:intergenic
TGGGAGGATTGTGTAGTTAA+AGG 0.221849 1_4:+6865709 Msa0146990:three_prime_UTR
ACTTAGCAAACTTCAAATTT+TGG 0.228892 1_4:+6863169 Msa0146990:CDS
AAAACCATAGTCATTGTTAA+AGG 0.235685 1_4:-6865906 None:intergenic
CAAGCAATTGGACAAGATTA+AGG 0.237668 1_4:+6862500 Msa0146990:CDS
TTGCTGCATAGCCTGTATTT+TGG 0.257557 1_4:-6863271 None:intergenic
ATTGCGAATTTCAAGCTCTT+TGG 0.257885 1_4:-6862742 None:intergenic
TTGAAGTTTGCTAAGTGTTT+TGG 0.260849 1_4:-6863162 None:intergenic
AATATGACTCTACAGAAATT+TGG 0.262881 1_4:-6862029 None:intergenic
TGATACTCCATGTGATAAAA+AGG 0.263448 1_4:+6863856 Msa0146990:CDS
GAAAGTCTTGGCCGAGATTA+TGG 0.264945 1_4:+6862930 Msa0146990:CDS
CAGAAAACTCCTCCAGCTTT+TGG 0.269644 1_4:-6864063 None:intergenic
TTTGGCTGTATATGCTTTCA+TGG 0.269714 1_4:-6863253 None:intergenic
CTGCTTGCCAAGAAGATATA+TGG 0.272289 1_4:-6865211 None:intergenic
CTTTCCTTTAACAATGACTA+TGG 0.282742 1_4:+6865902 Msa0146990:three_prime_UTR
GGCTACACGGTAATGATATT+TGG 0.284416 1_4:+6865638 Msa0146990:three_prime_UTR
TGAGAAAGTTGTTGCTGAAT+TGG 0.289805 1_4:+6861421 Msa0146990:CDS
AGAATGTGATTGTGATATTA+AGG 0.293253 1_4:-6860683 None:intergenic
TACAAAACATATACCTGTTT+GGG 0.302469 1_4:-6861467 None:intergenic
GCTATCAATCCCACGGGGAC+TGG 0.303633 1_4:-6863666 None:intergenic
CTACAAAACATATACCTGTT+TGG 0.304368 1_4:-6861468 None:intergenic
GACTTTGTAGGCTTGTGATT+TGG 0.317402 1_4:-6865480 None:intergenic
CTAGAGGTGGAGAAATTTGC+TGG 0.321649 1_4:+6863458 Msa0146990:CDS
CCACCTGATCCTGCAAATTT+GGG 0.328853 1_4:-6865329 None:intergenic
TTTAATATCCTTGGTTATAA+GGG 0.333038 1_4:+6864178 Msa0146990:CDS
GGCTCTGTCTAGGTCCTTGC+AGG 0.333327 1_4:+6862587 Msa0146990:CDS
TAAAATATATTACCATTAAA+GGG 0.336309 1_4:+6865972 Msa0146990:three_prime_UTR
ACTGTCAGTGTTTGAATCTA+TGG 0.340845 1_4:+6863718 Msa0146990:CDS
CTATCAATCCCACGGGGACT+GGG 0.341097 1_4:-6863665 None:intergenic
AGAAAAGAATGCTGACGAAT+TGG 0.344363 1_4:+6863391 Msa0146990:CDS
CAGGAAACCATATATCTTCT+TGG 0.344485 1_4:+6865204 Msa0146990:CDS
GATGAAGAGGCTGACTTTGT+AGG 0.345777 1_4:-6865492 None:intergenic
AATAAATGGGAGAGGTGGTT+TGG 0.347005 1_4:-6860739 None:intergenic
TAATGAAATTCAGACTAAAA+AGG 0.347824 1_4:+6865048 Msa0146990:CDS
GAAACTGAACCAAAATCTTC+AGG 0.348387 1_4:-6863884 None:intergenic
CCTTCTGCTGATTACTTGTC+TGG 0.348966 1_4:-6863202 None:intergenic
CAGAGTCTCTGAAATATTAC+AGG 0.349397 1_4:+6865846 Msa0146990:three_prime_UTR
GCATACACTCAGAAGGTTCT+TGG 0.355846 1_4:-6863928 None:intergenic
ACCTCGGAGCCCAAATTTGC+AGG 0.363025 1_4:+6865320 Msa0146990:CDS
GAGATGGACGGAGCTAGTTT+TGG 0.363929 1_4:+6865351 Msa0146990:CDS
ATAAATGGGAGAGGTGGTTT+GGG 0.373440 1_4:-6860738 None:intergenic
GAGAGGTGGTTTGGGTTTAA+GGG 0.376188 1_4:-6860730 None:intergenic
GAACATGTTTAATATCCTTC+AGG 0.376801 1_4:-6863766 None:intergenic
CTCGGATATATCATCTTTGC+TGG 0.377440 1_4:-6863576 None:intergenic
ATCATTACCATCTTCAGAAA+TGG 0.383278 1_4:-6863303 None:intergenic
ATATTCACATCTGACGGGTT+TGG 0.385175 1_4:+6862047 Msa0146990:CDS
TGAGGACTAGAAGGTTTAAC+AGG 0.386914 1_4:-6862975 None:intergenic
TGGATGGTGTACAGGAGATA+TGG 0.388288 1_4:-6865460 None:intergenic
GATAAATACTAAGGAAGCTT+TGG 0.389007 1_4:+6862161 Msa0146990:CDS
AGCTGAAGTTAAATCACAAT+TGG 0.392320 1_4:+6864519 Msa0146990:CDS
CTTAATCTTGTCCAATTGCT+TGG 0.394678 1_4:-6862499 None:intergenic
GTTCTCCATGGAGGACTTTG+AGG 0.394789 1_4:+6864396 Msa0146990:CDS
GAAAAGAATGCTGACGAATT+GGG 0.401808 1_4:+6863392 Msa0146990:CDS
ATATGCTTTCATGGTTCATA+TGG 0.402247 1_4:-6863244 None:intergenic
ACTGTAGCAAACTTGCTTCA+TGG 0.403189 1_4:-6864108 None:intergenic
ACAGAAATTTGGACATAGTT+CGG 0.403644 1_4:-6862018 None:intergenic
GATCCCATTGGTTCTGTTTG+AGG 0.404007 1_4:-6865249 None:intergenic
CACGACTTCGTGTTGTTCCT+TGG 0.413839 1_4:+6863989 Msa0146990:CDS
GAGATCTCATGAAGCAGCTT+TGG 0.414919 1_4:+6864699 Msa0146990:CDS
AAAACGTAACAGCGAATTGC+AGG 0.418739 1_4:+6863121 Msa0146990:CDS
GGAGGAGGTGGAAGTGGTAG+TGG 0.421429 1_4:-6860662 None:intergenic
TTCATTTGTGCAAGTGCAGC+AGG 0.425188 1_4:-6862897 None:intergenic
CTGATAATGCGGCTCTGTCT+AGG 0.427732 1_4:+6862577 Msa0146990:CDS
GAAACTGACTGCTGAGGATC+AGG 0.433279 1_4:+6862377 Msa0146990:CDS
TTCTCTTTCACATGATTCTA+CGG 0.433391 1_4:-6862685 None:intergenic
TTTCTGTCTTCATTCGTAGA+TGG 0.433666 1_4:-6864648 None:intergenic
GATGTCAAATTTCCATCATC+AGG 0.434545 1_4:-6864343 None:intergenic
AATCCTGAGGTTCCTGATGA+TGG 0.437920 1_4:+6864331 Msa0146990:CDS
AGCTGCTAACAAGCAGCATA+TGG 0.446965 1_4:+6862797 Msa0146990:CDS
AAGGAAAAGAATACAACATA+TGG 0.447308 1_4:-6865790 None:intergenic
GAATTCAGATTTAATATCCT+TGG 0.447868 1_4:+6864169 Msa0146990:CDS
TGCATCTAATCAACCCAAAC+AGG 0.451553 1_4:+6861454 Msa0146990:CDS
GAGAGGGTGCCATGAATGTC+TGG 0.451979 1_4:+6865731 Msa0146990:three_prime_UTR
AAGTGTTTGTAAAATGCAAA+GGG 0.452367 1_4:-6865401 None:intergenic
CGAGAAGTTGTGCCGAGTCT+TGG 0.454331 1_4:+6863330 Msa0146990:CDS
TCAATTTCGTTAAATCATGA+AGG 0.454908 1_4:-6865681 None:intergenic
TATTAAGGAGGAGGTGGAAG+TGG 0.456251 1_4:-6860668 None:intergenic
GCAATCTTATCTATGCAATC+AGG 0.456472 1_4:-6864223 None:intergenic
CATACACTCAGAAGGTTCTT+GGG 0.458195 1_4:-6863927 None:intergenic
AGAACATGAACTGAAAATAC+AGG 0.458759 1_4:+6862458 Msa0146990:CDS
GTTGCTGAATTGGACTCTGC+TGG 0.461830 1_4:+6861431 Msa0146990:CDS
GCTTTCATGGTTCATATGGA+TGG 0.462160 1_4:-6863240 None:intergenic
CTTGTATCTAATGTTGTACA+TGG 0.462364 1_4:+6865764 Msa0146990:three_prime_UTR
GGTGGAAGTGGTAGTGGTAG+TGG 0.463187 1_4:-6860656 None:intergenic
TATCCTTGGTTATAAGGGTA+TGG 0.463385 1_4:+6864183 Msa0146990:CDS
AGCATATACAGCCAAAATAC+AGG 0.468052 1_4:+6863260 Msa0146990:CDS
AGTGAAGACATATGAAGAAA+AGG 0.470909 1_4:+6862077 Msa0146990:CDS
AGCCAAGAGTCTCCTGCTGC+AGG 0.471852 1_4:+6863632 Msa0146990:CDS
ATTGTGATTTGAGTGAGATA+TGG 0.475292 1_4:+6861352 Msa0146990:exon
TGAAAAGTTAGCCGAGTGTC+AGG 0.477083 1_4:+6865185 Msa0146990:CDS
AAAGGCAGAAGCAGAAGCTT+TGG 0.478071 1_4:+6862320 Msa0146990:CDS
GTATATATAATAGTAGTAGA+AGG 0.479173 1_4:+6860574 None:intergenic
ATCCTGCAGCAGGAGACTCT+TGG 0.481478 1_4:-6863634 None:intergenic
AAATTCTCCAGGCTGGGAAA+AGG 0.482919 1_4:+6862302 Msa0146990:intron
TTTCCATCATCAGGAACCTC+AGG 0.483685 1_4:-6864334 None:intergenic
TATCAATCCCACGGGGACTG+GGG 0.484881 1_4:-6863664 None:intergenic
AAGCAATTGGACAAGATTAA+GGG 0.485157 1_4:+6862501 Msa0146990:CDS
AACTTCAGCTAGAAGTTGCT+CGG 0.486763 1_4:-6864506 None:intergenic
GAATTTCAGCTACAGAGTCT+TGG 0.486988 1_4:-6863814 None:intergenic
ACTTTGAACAGGAACTTCTC+AGG 0.487308 1_4:+6862547 Msa0146990:CDS
GGGGCTGGTGATCCTGCAGC+AGG 0.488978 1_4:-6863644 None:intergenic
ATGATCTCCATTTCTGAAGA+TGG 0.489920 1_4:+6863296 Msa0146990:CDS
TATAATAGTAGTAGAAGGTA+AGG 0.490155 1_4:+6860579 None:intergenic
GAGCCCAAATTTGCAGGATC+AGG 0.490198 1_4:+6865326 Msa0146990:CDS
TTTAACGAAATTGAGCTTGT+GGG 0.494026 1_4:+6865690 Msa0146990:three_prime_UTR
ATATCATTACCAGACATTCA+TGG 0.495064 1_4:-6865740 None:intergenic
GGAGAGAAATGAGGACTAGA+AGG 0.495341 1_4:-6862984 None:intergenic
TCATGAAGGGGTTCGCAACC+TGG 0.497052 1_4:-6865667 None:intergenic
TTGTGATTTGGATGGTGTAC+AGG 0.497419 1_4:-6865468 None:intergenic
ATATTCTCGAGGGAGAAATC+AGG 0.498205 1_4:-6863011 None:intergenic
TCAGAAGCTGGCACATCGAC+GGG 0.504799 1_4:-6863836 None:intergenic
TTGTGATATTAAGGAGGAGG+TGG 0.504825 1_4:-6860674 None:intergenic
TTCTAGTCCTCATTTCTCTC+CGG 0.504915 1_4:+6862986 Msa0146990:CDS
GTAGCTGAAGAGGCTGTCTC+AGG 0.506912 1_4:+6862201 Msa0146990:CDS
TTAGTTCAAGAAAATTCGTC+GGG 0.507234 1_4:+6864262 Msa0146990:CDS
ATATGGATAGAAGATGGCCT+TGG 0.509231 1_4:+6861369 Msa0146990:exon
AAAGTGTTTGTAAAATGCAA+AGG 0.511679 1_4:-6865402 None:intergenic
TAGGATACGGAACTTTGAAC+AGG 0.511809 1_4:+6862536 Msa0146990:CDS
GGAGACTCTTGGCTTTGCAA+TGG 0.513807 1_4:-6863623 None:intergenic
TTCACATCTGACGGGTTTGG+AGG 0.515273 1_4:+6862050 Msa0146990:CDS
ATCACTTGAAACACGTGCAC+AGG 0.515281 1_4:+6864606 Msa0146990:CDS
CAGTGAAAATTCATGATATG+AGG 0.516624 1_4:+6865617 Msa0146990:three_prime_UTR
CACAATTGGCTTCTGCTCAA+AGG 0.517000 1_4:+6864533 Msa0146990:CDS
CCCAAATTTGCAGGATCAGG+TGG 0.517045 1_4:+6865329 Msa0146990:CDS
ATTCTTGATTGAAGATCTGC+TGG 0.518048 1_4:-6863695 None:intergenic
CTTTCATGGTTCATATGGAT+GGG 0.519994 1_4:-6863239 None:intergenic
AAGTTTGAGTCATTATCTGA+TGG 0.520066 1_4:-6865432 None:intergenic
TATAAAGAGAAACAATGAAA+AGG 0.521693 1_4:-6865809 None:intergenic
AAACACAGAGATAAATACTA+AGG 0.521716 1_4:+6862152 Msa0146990:CDS
CAGCAAATTTCTCCACCTCT+AGG 0.522984 1_4:-6863457 None:intergenic
ATCAATCCCACGGGGACTGG+GGG 0.524378 1_4:-6863663 None:intergenic
AGAGAAAGAGAAGGCAATTG+TGG 0.526170 1_4:+6864429 Msa0146990:CDS
ATCGAGTTTCGCCATAATCT+CGG 0.528105 1_4:-6862941 None:intergenic
TTGTAGGCTTGTGATTTGGA+TGG 0.529818 1_4:-6865476 None:intergenic
AGGAACCTCAGGATTAGAGC+AGG 0.530360 1_4:-6864323 None:intergenic
AGCTTCTTCCACTCCTACAC+CGG 0.531327 1_4:+6865515 Msa0146990:CDS
AATGATATTTGGACAGCACC+AGG 0.531907 1_4:+6865649 Msa0146990:three_prime_UTR
GGAATTTCTGTATATTCTCG+AGG 0.533704 1_4:-6863022 None:intergenic
TGCACTTGCACAAATGAAGC+TGG 0.533816 1_4:+6862902 Msa0146990:CDS
TCGGGAGAGAGATATCAAAA+TGG 0.535384 1_4:+6864280 Msa0146990:CDS
ATCAGAAGCTGGCACATCGA+CGG 0.537438 1_4:-6863837 None:intergenic
AGATGGTATAAGCCAAAAGC+TGG 0.541988 1_4:+6864051 Msa0146990:CDS
ACTGACTTCAGATACATCAT+TGG 0.542121 1_4:-6863552 None:intergenic
AGTGGAAGAAGCTGATGAAG+AGG 0.542780 1_4:-6865505 None:intergenic
TTTGCAGGATCAGGTGGAGA+TGG 0.543626 1_4:+6865335 Msa0146990:CDS
GTTCATGATATATCTTCTGA+TGG 0.544329 1_4:+6864028 Msa0146990:CDS
AATTAGAGGCTGAGTGTCAA+AGG 0.544913 1_4:+6862841 Msa0146990:CDS
ATTTAACGAAATTGAGCTTG+TGG 0.545126 1_4:+6865689 Msa0146990:three_prime_UTR
CAATTTCGTTAAATCATGAA+GGG 0.545399 1_4:-6865680 None:intergenic
CAATTCCTCAAAGTCCTCCA+TGG 0.546558 1_4:-6864401 None:intergenic
AAAGGTTACGTGGTCTAGTA+CGG 0.546735 1_4:+6862859 Msa0146990:CDS
AAGAAAAGAACATGAGTATG+AGG 0.546898 1_4:+6862766 Msa0146990:CDS
GCATCCTCAAACAGAACCAA+TGG 0.547812 1_4:+6865245 Msa0146990:CDS
CATGCATTTGAGTTGAGTCT+CGG 0.550144 1_4:-6864569 None:intergenic
TACAGAGCGCTTATTGACAA+TGG 0.550529 1_4:+6863064 Msa0146990:CDS
ATTGAGATTAGAGAAAGAGA+AGG 0.551379 1_4:+6864420 Msa0146990:CDS
ACATGCTAAAGTAGCTGAAG+AGG 0.551814 1_4:+6862191 Msa0146990:CDS
GTTAGTTCAAGAAAATTCGT+CGG 0.552800 1_4:+6864261 Msa0146990:CDS
CCAGACAAGTAATCAGCAGA+AGG 0.556259 1_4:+6863202 Msa0146990:CDS
CTGTCATTGCTTCTCTGCCA+AGG 0.558008 1_4:-6864006 None:intergenic
GTGATCTTGAGGCTAGGATA+CGG 0.560014 1_4:+6862523 Msa0146990:CDS
AAAAGAATCTGCTAAAACCT+CGG 0.562481 1_4:-6865548 None:intergenic
AGCAGCTTTGGCAAAGTGCA+AGG 0.562788 1_4:+6864711 Msa0146990:CDS
AGTGAGATATGGATAGAAGA+TGG 0.564925 1_4:+6861363 Msa0146990:exon
GAGTCATATTCACATCTGAC+GGG 0.567613 1_4:+6862042 Msa0146990:CDS
GATATATCTTCTGATGGAGA+TGG 0.568592 1_4:+6864034 Msa0146990:CDS
TTCAGCTACAGAGTCTTGGA+TGG 0.569854 1_4:-6863810 None:intergenic
TGTGCAAGTGCAGCAGGACC+AGG 0.570936 1_4:-6862891 None:intergenic
TGCCGCAAAAGCTCAATGAC+CGG 0.572380 1_4:-6865586 None:intergenic
CTAGTACGGAAGAAGTTACC+TGG 0.573504 1_4:+6862873 Msa0146990:CDS
TCCTGCAAATTTGGGCTCCG+AGG 0.575513 1_4:-6865321 None:intergenic
AAGCTGGAAGTTGAAAGTCT+TGG 0.575557 1_4:+6862918 Msa0146990:CDS
GACTAAGAAGTTAGAACTGA+TGG 0.576324 1_4:+6863427 Msa0146990:CDS
CATCCTCAAACAGAACCAAT+GGG 0.577158 1_4:+6865246 Msa0146990:CDS
TCACATGGAGTATCAGAAGC+TGG 0.577531 1_4:-6863848 None:intergenic
CAAGATTAAGGGTGATCTTG+AGG 0.577662 1_4:+6862512 Msa0146990:CDS
TTGATCATAGGAGAGAGACT+TGG 0.578161 1_4:+6865152 Msa0146990:intron
ATATTACCATTAAAGGGGTG+CGG 0.579062 1_4:+6865978 Msa0146990:three_prime_UTR
ATGGCTAAGGATGCTGATGT+AGG 0.582211 1_4:+6863737 Msa0146990:CDS
AAATCTGTCATTTATGACCA+TGG 0.582897 1_4:-6865942 None:intergenic
GTTTGAAGTAAATGGCAAAG+AGG 0.583585 1_4:-6863507 None:intergenic
TGCTAACAAGCAGCATATGG+AGG 0.587476 1_4:+6862800 Msa0146990:CDS
TGAAAAGCTATCAATCCCAC+GGG 0.590101 1_4:-6863672 None:intergenic
CACGTCACAAAAGTTCTCCA+TGG 0.591616 1_4:+6864384 Msa0146990:CDS
CAGGTCTGCTGCTGATAATG+CGG 0.592535 1_4:+6862566 Msa0146990:CDS
CAGGATCAGGTGGAGATGGA+CGG 0.595264 1_4:+6865339 Msa0146990:CDS
ATAATAATAATAAATGGGAG+AGG 0.595581 1_4:-6860747 None:intergenic
GTGAAAAGCTATCAATCCCA+CGG 0.595662 1_4:-6863673 None:intergenic
CATGTTAGAGCGCTCCTGCA+AGG 0.598974 1_4:-6862601 None:intergenic
TCACTGTACATAGATCCCAT+TGG 0.599900 1_4:-6865261 None:intergenic
TGATTGTGATATTAAGGAGG+AGG 0.600565 1_4:-6860677 None:intergenic
TCGAGGGAGAAATCAGGCAC+CGG 0.602488 1_4:-6863005 None:intergenic
CAATCCCTGCTCTAATCCTG+AGG 0.602697 1_4:+6864318 Msa0146990:CDS
AACGAAATTGAGCTTGTGGG+AGG 0.602754 1_4:+6865693 Msa0146990:three_prime_UTR
TTAAGGGTGATCTTGAGGCT+AGG 0.602821 1_4:+6862517 Msa0146990:CDS
AGCTAGAAGAACAATTGCAA+AGG 0.604021 1_4:+6864734 Msa0146990:CDS
ATATATGGTTTCCTGACACT+CGG 0.607908 1_4:-6865196 None:intergenic
ATAATAATAAATGGGAGAGG+TGG 0.608089 1_4:-6860744 None:intergenic
CGAGACTCAACTCAAATGCA+TGG 0.608379 1_4:+6864570 Msa0146990:CDS
TCAGGCACCGGAGAGAAATG+AGG 0.609792 1_4:-6862993 None:intergenic
AAAATATATTACCATTAAAG+GGG 0.611457 1_4:+6865973 Msa0146990:three_prime_UTR
AGAGTCATATTCACATCTGA+CGG 0.613513 1_4:+6862041 Msa0146990:CDS
GATCAGGTGTCACAGTTAGA+CGG 0.614576 1_4:+6862393 Msa0146990:CDS
CAGACAAGTAATCAGCAGAA+GGG 0.615118 1_4:+6863203 Msa0146990:CDS
GAATTTCTGTATATTCTCGA+GGG 0.615195 1_4:-6863021 None:intergenic
AGTGTTTGAATCTATGGCTA+AGG 0.616003 1_4:+6863724 Msa0146990:CDS
GGATTGTGTAGTTAAAGGAG+AGG 0.616290 1_4:+6865714 Msa0146990:three_prime_UTR
TGACGAATTGGGCAAATCTG+AGG 0.616648 1_4:+6863403 Msa0146990:CDS
AATTTCGTTAAATCATGAAG+GGG 0.620082 1_4:-6865679 None:intergenic
GTTATCTGCATACACTCAGA+AGG 0.621671 1_4:-6863935 None:intergenic
GCTAACAAGCAGCATATGGA+GGG 0.621875 1_4:+6862801 Msa0146990:CDS
TATTGCTGTCGACCAAGACT+CGG 0.624331 1_4:-6863342 None:intergenic
ATTCATGATATGAGGCTACA+CGG 0.629027 1_4:+6865625 Msa0146990:three_prime_UTR
GATTGTGTAGTTAAAGGAGA+GGG 0.634854 1_4:+6865715 Msa0146990:three_prime_UTR
ATGTGATTGTGATATTAAGG+AGG 0.635332 1_4:-6860680 None:intergenic
GATGGATGACTTCCTAGAGG+TGG 0.638572 1_4:+6863445 Msa0146990:CDS
TTTCCATACCCTTATAACCA+AGG 0.638601 1_4:-6864186 None:intergenic
TGGTATAAGCCAAAAGCTGG+AGG 0.650413 1_4:+6864054 Msa0146990:CDS
GGAACCTCAGGATTAGAGCA+GGG 0.651732 1_4:-6864322 None:intergenic
AGAAAAGGTTCAGACACTTG+AGG 0.656387 1_4:+6862092 Msa0146990:CDS
GCTTCACAGAGCATCAACCT+CGG 0.657044 1_4:+6865304 Msa0146990:CDS
TGATGTAGGTAAGATCCTGA+AGG 0.658649 1_4:+6863751 Msa0146990:CDS
TCTTTCGAAACTGACTGCTG+AGG 0.670642 1_4:+6862371 Msa0146990:CDS
ATTATGGCGAAACTCGATTG+CGG 0.684534 1_4:+6862946 Msa0146990:CDS
ACTGATGGATGACTTCCTAG+AGG 0.703699 1_4:+6863442 Msa0146990:CDS
GCTGAGTGTCAAAGGTTACG+TGG 0.710643 1_4:+6862849 Msa0146990:CDS
AGTGTTTGTAAAATGCAAAG+GGG 0.712425 1_4:-6865400 None:intergenic
GTCACAAAAGTTCTCCATGG+AGG 0.731979 1_4:+6864387 Msa0146990:CDS
GAAAAGCTATCAATCCCACG+GGG 0.825805 1_4:-6863671 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATAAAT+GGG - chr1_4:6860755-6860774 None:intergenic 0.0%
!! ATAATAATAATAATAATAAA+TGG - chr1_4:6860756-6860775 None:intergenic 0.0%
!!! TATTATTATTATTGTGTTTT+TGG + chr1_4:6860884-6860903 Msa0146990:intron 10.0%
!!! ACTTTTTATTTATTTATACA+AGG + chr1_4:6861294-6861313 Msa0146990:intron 10.0%
!! ATAAAATATATTACCATTAA+AGG + chr1_4:6865971-6865990 Msa0146990:three_prime_UTR 10.0%
!! TAAAATATATTACCATTAAA+GGG + chr1_4:6865972-6865991 Msa0146990:three_prime_UTR 10.0%
!! TTAAAATTATTAATAGAAGG+AGG - chr1_4:6860846-6860865 None:intergenic 15.0%
!! GTACAATTATAGTAATTTAA+GGG + chr1_4:6861004-6861023 Msa0146990:intron 15.0%
!! AGAATTTGGTTATTATAATT+TGG - chr1_4:6861064-6861083 None:intergenic 15.0%
!!! TTTTTTTTTATTCAGCAATA+TGG + chr1_4:6861920-6861939 Msa0146990:intron 15.0%
!! TAAAAAAATTGCTAAATTAG+AGG + chr1_4:6862827-6862846 Msa0146990:CDS 15.0%
!! TTCTTAGATTTCTATTTAAA+TGG - chr1_4:6865120-6865139 None:intergenic 15.0%
!! AAAATATATTACCATTAAAG+GGG + chr1_4:6865973-6865992 Msa0146990:three_prime_UTR 15.0%
!! ATAATAATAATAAATGGGAG+AGG - chr1_4:6860750-6860769 None:intergenic 20.0%
!! GGTACAATTATAGTAATTTA+AGG + chr1_4:6861003-6861022 Msa0146990:intron 20.0%
!!! AGATTCAAGTATTTTTCATT+TGG + chr1_4:6861632-6861651 Msa0146990:intron 20.0%
!! AAAAAAAAAAGCAAGACAAA+TGG - chr1_4:6861907-6861926 None:intergenic 20.0%
!! TAAGAAATTCATTATCTTTC+TGG - chr1_4:6863046-6863065 None:intergenic 20.0%
!! ATTTAATATCCTTGGTTATA+AGG + chr1_4:6864177-6864196 Msa0146990:CDS 20.0%
!! TTTAATATCCTTGGTTATAA+GGG + chr1_4:6864178-6864197 Msa0146990:CDS 20.0%
!! ACTTACACATTATATGATAT+TGG - chr1_4:6864772-6864791 None:intergenic 20.0%
!! TAATGAAATTCAGACTAAAA+AGG + chr1_4:6865048-6865067 Msa0146990:CDS 20.0%
!!! TGAATTATTTTCTTGATCAT+AGG + chr1_4:6865140-6865159 Msa0146990:intron 20.0%
!! TATAAAGAGAAACAATGAAA+AGG - chr1_4:6865812-6865831 None:intergenic 20.0%
!!! TTTTTTAAAAGTTGTAACCA+TGG + chr1_4:6865925-6865944 Msa0146990:three_prime_UTR 20.0%
!!! GATTTTTGGGAATTAGAATT+AGG - chr1_4:6860625-6860644 None:intergenic 25.0%
! AGAATGTGATTGTGATATTA+AGG - chr1_4:6860686-6860705 None:intergenic 25.0%
! TTTCTCTTGTGTAATGAATA+TGG + chr1_4:6861220-6861239 Msa0146990:intron 25.0%
!!! GTGAATTTTGGAAACATAAA+AGG + chr1_4:6861250-6861269 Msa0146990:intron 25.0%
!!! GTTTTTTTTGTTGTTGTAGA+AGG + chr1_4:6861321-6861340 Msa0146990:intron 25.0%
! TACAAAACATATACCTGTTT+GGG - chr1_4:6861470-6861489 None:intergenic 25.0%
! TGATACGTTGAATTTAATCA+AGG - chr1_4:6861532-6861551 None:intergenic 25.0%
! TTCATTGGGTATATGTTTAT+TGG + chr1_4:6861580-6861599 Msa0146990:intron 25.0%
! TTGGCATTTCATATAAGAAA+AGG + chr1_4:6861599-6861618 Msa0146990:intron 25.0%
! ATTTCATATAAGAAAAGGAC+TGG + chr1_4:6861604-6861623 Msa0146990:intron 25.0%
!! TTCTGCTTAATTTTTATGCA+TGG + chr1_4:6861663-6861682 Msa0146990:intron 25.0%
! CAAAACTTGAAATGTTAACA+AGG - chr1_4:6861689-6861708 None:intergenic 25.0%
!!! AAGTTTTGAAGAACAATTTC+TGG + chr1_4:6861701-6861720 Msa0146990:intron 25.0%
! TAATGTACTAATCATAAACC+CGG - chr1_4:6861789-6861808 None:intergenic 25.0%
! AATATGACTCTACAGAAATT+TGG - chr1_4:6862032-6862051 None:intergenic 25.0%
! AAACACAGAGATAAATACTA+AGG + chr1_4:6862152-6862171 Msa0146990:CDS 25.0%
! ATTTGAACAGAACTTTAACT+CGG - chr1_4:6862286-6862305 None:intergenic 25.0%
!! ACTTAGCAAACTTCAAATTT+TGG + chr1_4:6863169-6863188 Msa0146990:CDS 25.0%
!! GTCTTATTGTTTGAAGTAAA+TGG - chr1_4:6863518-6863537 None:intergenic 25.0%
! GAATTCAGATTTAATATCCT+TGG + chr1_4:6864169-6864188 Msa0146990:CDS 25.0%
!!! TCTTGAACTAACTTATTTTC+AGG - chr1_4:6864253-6864272 None:intergenic 25.0%
! CTAATAGACAAAGTAACAAA+AGG - chr1_4:6865007-6865026 None:intergenic 25.0%
!!! CTTTTGTTACTTTGTCTATT+AGG + chr1_4:6865005-6865024 Msa0146990:intron 25.0%
! AAGTGTTTGTAAAATGCAAA+GGG - chr1_4:6865404-6865423 None:intergenic 25.0%
!! AAAGTGTTTGTAAAATGCAA+AGG - chr1_4:6865405-6865424 None:intergenic 25.0%
!! TTTTCATCAAAAGGAAAAAC+CGG + chr1_4:6865567-6865586 Msa0146990:CDS 25.0%
! AATTTCGTTAAATCATGAAG+GGG - chr1_4:6865682-6865701 None:intergenic 25.0%
! CAATTTCGTTAAATCATGAA+GGG - chr1_4:6865683-6865702 None:intergenic 25.0%
! TCAATTTCGTTAAATCATGA+AGG - chr1_4:6865684-6865703 None:intergenic 25.0%
! AAGGAAAAGAATACAACATA+TGG - chr1_4:6865793-6865812 None:intergenic 25.0%
! AAAACCATAGTCATTGTTAA+AGG - chr1_4:6865909-6865928 None:intergenic 25.0%
! GGTGACTAAGAAAGATTTTT+GGG - chr1_4:6860638-6860657 None:intergenic 30.0%
! TGGTGACTAAGAAAGATTTT+TGG - chr1_4:6860639-6860658 None:intergenic 30.0%
ATGTGATTGTGATATTAAGG+AGG - chr1_4:6860683-6860702 None:intergenic 30.0%
ATAATAATAAATGGGAGAGG+TGG - chr1_4:6860747-6860766 None:intergenic 30.0%
TTGGATGATGATATAAAGAG+AGG + chr1_4:6860903-6860922 Msa0146990:intron 30.0%
TTAGATCTTGAAGATCACAT+TGG + chr1_4:6860938-6860957 Msa0146990:intron 30.0%
AATAACCAAATTCTACCATC+TGG + chr1_4:6861070-6861089 Msa0146990:intron 30.0%
ATAACCAAATTCTACCATCT+GGG + chr1_4:6861071-6861090 Msa0146990:intron 30.0%
AGAAATGATTACATGCACTA+AGG - chr1_4:6861165-6861184 None:intergenic 30.0%
ATTGTGATTTGAGTGAGATA+TGG + chr1_4:6861352-6861371 Msa0146990:exon 30.0%
!!! TCAGATGATTTTTTCTTCCA+AGG - chr1_4:6861389-6861408 None:intergenic 30.0%
CTACAAAACATATACCTGTT+TGG - chr1_4:6861471-6861490 None:intergenic 30.0%
TTGACACTTCTAATAGTGTT+CGG + chr1_4:6861493-6861512 Msa0146990:intron 30.0%
!! AGTTTCTTACTTTTCTGCTA+TGG + chr1_4:6861749-6861768 Msa0146990:intron 30.0%
!!! TATGGCCTTTTTTTTAATCC+CGG + chr1_4:6861767-6861786 Msa0146990:intron 30.0%
TAAACCCGGGATTAAAAAAA+AGG - chr1_4:6861775-6861794 None:intergenic 30.0%
AATGTACTAATCATAAACCC+GGG - chr1_4:6861788-6861807 None:intergenic 30.0%
ATTATGAAGCATACTAGATG+CGG + chr1_4:6861805-6861824 Msa0146990:intron 30.0%
TTTAGATATGTGTTTGTGTG+TGG + chr1_4:6861834-6861853 Msa0146990:intron 30.0%
TTAGATATGTGTTTGTGTGT+GGG + chr1_4:6861835-6861854 Msa0146990:intron 30.0%
! AGACAAATGGAGTATTAGTT+AGG - chr1_4:6861894-6861913 None:intergenic 30.0%
ACAGAAATTTGGACATAGTT+CGG - chr1_4:6862021-6862040 None:intergenic 30.0%
AGTGAAGACATATGAAGAAA+AGG + chr1_4:6862077-6862096 Msa0146990:CDS 30.0%
GATAAATACTAAGGAAGCTT+TGG + chr1_4:6862161-6862180 Msa0146990:CDS 30.0%
AAAGGAAACACTATACATCA+AGG - chr1_4:6862254-6862273 None:intergenic 30.0%
TTAACTCGGGAAACAAAAAA+AGG - chr1_4:6862272-6862291 None:intergenic 30.0%
TTTGAACAGAACTTTAACTC+GGG - chr1_4:6862285-6862304 None:intergenic 30.0%
AGAACATGAACTGAAAATAC+AGG + chr1_4:6862458-6862477 Msa0146990:CDS 30.0%
AAGCAATTGGACAAGATTAA+GGG + chr1_4:6862501-6862520 Msa0146990:CDS 30.0%
TTCTCTTTCACATGATTCTA+CGG - chr1_4:6862688-6862707 None:intergenic 30.0%
AAGAAAAGAACATGAGTATG+AGG + chr1_4:6862766-6862785 Msa0146990:CDS 30.0%
GAATTTCTGTATATTCTCGA+GGG - chr1_4:6863024-6863043 None:intergenic 30.0%
!!! TTGAAGTTTGCTAAGTGTTT+TGG - chr1_4:6863165-6863184 None:intergenic 30.0%
ATATGCTTTCATGGTTCATA+TGG - chr1_4:6863247-6863266 None:intergenic 30.0%
ATCATTACCATCTTCAGAAA+TGG - chr1_4:6863306-6863325 None:intergenic 30.0%
!! ATTCTTTTCTTTTGGGAGTT+GGG - chr1_4:6863381-6863400 None:intergenic 30.0%
! TTCAAATCACTCTTCTTTTC+AGG - chr1_4:6863602-6863621 None:intergenic 30.0%
GAACATGTTTAATATCCTTC+AGG - chr1_4:6863769-6863788 None:intergenic 30.0%
TGATACTCCATGTGATAAAA+AGG + chr1_4:6863856-6863875 Msa0146990:CDS 30.0%
GTTCATGATATATCTTCTGA+TGG + chr1_4:6864028-6864047 Msa0146990:CDS 30.0%
GTTAGTTCAAGAAAATTCGT+CGG + chr1_4:6864261-6864280 Msa0146990:CDS 30.0%
TTAGTTCAAGAAAATTCGTC+GGG + chr1_4:6864262-6864281 Msa0146990:CDS 30.0%
ATTGAGATTAGAGAAAGAGA+AGG + chr1_4:6864420-6864439 Msa0146990:CDS 30.0%
AGCTGAAGTTAAATCACAAT+TGG + chr1_4:6864519-6864538 Msa0146990:CDS 30.0%
CATAGTAAGTTAATGTTAGC+AGG - chr1_4:6864918-6864937 None:intergenic 30.0%
GGAGGAATTAGAAATAGAAT+TGG - chr1_4:6864986-6865005 None:intergenic 30.0%
ATAGACAAAGTAACAAAAGG+AGG - chr1_4:6865004-6865023 None:intergenic 30.0%
GCTTTCTATTTGAATGGAAT+CGG - chr1_4:6865081-6865100 None:intergenic 30.0%
!!! CTAGTTTTGGTTTTATGCAA+AGG + chr1_4:6865364-6865383 Msa0146990:CDS 30.0%
AGTGTTTGTAAAATGCAAAG+GGG - chr1_4:6865403-6865422 None:intergenic 30.0%
AAGTTTGAGTCATTATCTGA+TGG - chr1_4:6865435-6865454 None:intergenic 30.0%
AAAAGAATCTGCTAAAACCT+CGG - chr1_4:6865551-6865570 None:intergenic 30.0%
! AGCAGATTCTTTTCATCAAA+AGG + chr1_4:6865558-6865577 Msa0146990:CDS 30.0%
! CTCATATCATGAATTTTCAC+TGG - chr1_4:6865619-6865638 None:intergenic 30.0%
CAGTGAAAATTCATGATATG+AGG + chr1_4:6865617-6865636 Msa0146990:three_prime_UTR 30.0%
ATTTAACGAAATTGAGCTTG+TGG + chr1_4:6865689-6865708 Msa0146990:three_prime_UTR 30.0%
TTTAACGAAATTGAGCTTGT+GGG + chr1_4:6865690-6865709 Msa0146990:three_prime_UTR 30.0%
ATATCATTACCAGACATTCA+TGG - chr1_4:6865743-6865762 None:intergenic 30.0%
CTTGTATCTAATGTTGTACA+TGG + chr1_4:6865764-6865783 Msa0146990:three_prime_UTR 30.0%
CTTTCCTTTAACAATGACTA+TGG + chr1_4:6865902-6865921 Msa0146990:three_prime_UTR 30.0%
! AAATCTGTCATTTATGACCA+TGG - chr1_4:6865945-6865964 None:intergenic 30.0%
TGATTGTGATATTAAGGAGG+AGG - chr1_4:6860680-6860699 None:intergenic 35.0%
GAGAAGAAGAGAGAGTAAAA+TGG - chr1_4:6860824-6860843 None:intergenic 35.0%
TGAAATGCAACAAACAGAGA+AGG - chr1_4:6861097-6861116 None:intergenic 35.0%
! TATGGCATGTGTGTGAATTT+TGG + chr1_4:6861238-6861257 Msa0146990:intron 35.0%
AGTGAGATATGGATAGAAGA+TGG + chr1_4:6861363-6861382 Msa0146990:exon 35.0%
TGAGAAAGTTGTTGCTGAAT+TGG + chr1_4:6861421-6861440 Msa0146990:CDS 35.0%
!!! ATGGCCTTTTTTTTAATCCC+GGG + chr1_4:6861768-6861787 Msa0146990:intron 35.0%
TTATGAAGCATACTAGATGC+GGG + chr1_4:6861806-6861825 Msa0146990:intron 35.0%
GGGATTTGAACTTGCATAAT+TGG + chr1_4:6861855-6861874 Msa0146990:intron 35.0%
AGAGTCATATTCACATCTGA+CGG + chr1_4:6862041-6862060 Msa0146990:CDS 35.0%
AAGTTCTGTTCAAATTCTCC+AGG + chr1_4:6862291-6862310 Msa0146990:intron 35.0%
TCAGTTCATGTTCTTCTTTC+AGG - chr1_4:6862452-6862471 None:intergenic 35.0%
!! CAATTGCTTGGTTTTTGCAA+CGG - chr1_4:6862490-6862509 None:intergenic 35.0%
CTTAATCTTGTCCAATTGCT+TGG - chr1_4:6862502-6862521 None:intergenic 35.0%
CAAGCAATTGGACAAGATTA+AGG + chr1_4:6862500-6862519 Msa0146990:CDS 35.0%
ATTGCGAATTTCAAGCTCTT+TGG - chr1_4:6862745-6862764 None:intergenic 35.0%
GGAATTTCTGTATATTCTCG+AGG - chr1_4:6863025-6863044 None:intergenic 35.0%
!! CTTCAAATTTTGGAAGCACA+AGG + chr1_4:6863179-6863198 Msa0146990:CDS 35.0%
! TTCATATGGATGGGAGATTT+TGG - chr1_4:6863233-6863252 None:intergenic 35.0%
CTTTCATGGTTCATATGGAT+GGG - chr1_4:6863242-6863261 None:intergenic 35.0%
TTTGGCTGTATATGCTTTCA+TGG - chr1_4:6863256-6863275 None:intergenic 35.0%
AGCATATACAGCCAAAATAC+AGG + chr1_4:6863260-6863279 Msa0146990:CDS 35.0%
! ATGATCTCCATTTCTGAAGA+TGG + chr1_4:6863296-6863315 Msa0146990:CDS 35.0%
!! CATTCTTTTCTTTTGGGAGT+TGG - chr1_4:6863382-6863401 None:intergenic 35.0%
! CGTCAGCATTCTTTTCTTTT+GGG - chr1_4:6863388-6863407 None:intergenic 35.0%
! TCGTCAGCATTCTTTTCTTT+TGG - chr1_4:6863389-6863408 None:intergenic 35.0%
AGAAAAGAATGCTGACGAAT+TGG + chr1_4:6863391-6863410 Msa0146990:CDS 35.0%
GAAAAGAATGCTGACGAATT+GGG + chr1_4:6863392-6863411 Msa0146990:CDS 35.0%
GACTAAGAAGTTAGAACTGA+TGG + chr1_4:6863427-6863446 Msa0146990:CDS 35.0%
! GTTTGAAGTAAATGGCAAAG+AGG - chr1_4:6863510-6863529 None:intergenic 35.0%
! ACTGACTTCAGATACATCAT+TGG - chr1_4:6863555-6863574 None:intergenic 35.0%
ATTCTTGATTGAAGATCTGC+TGG - chr1_4:6863698-6863717 None:intergenic 35.0%
ACTGTCAGTGTTTGAATCTA+TGG + chr1_4:6863718-6863737 Msa0146990:CDS 35.0%
AGTGTTTGAATCTATGGCTA+AGG + chr1_4:6863724-6863743 Msa0146990:CDS 35.0%
! GGATCATCCTTTTTATCACA+TGG - chr1_4:6863866-6863885 None:intergenic 35.0%
! AAGGATGATCCTGAAGATTT+TGG + chr1_4:6863875-6863894 Msa0146990:CDS 35.0%
GAAACTGAACCAAAATCTTC+AGG - chr1_4:6863887-6863906 None:intergenic 35.0%
GATATATCTTCTGATGGAGA+TGG + chr1_4:6864034-6864053 Msa0146990:CDS 35.0%
TCTTGATCTGTCTCATTTCT+TGG + chr1_4:6864135-6864154 Msa0146990:CDS 35.0%
TATCCTTGGTTATAAGGGTA+TGG + chr1_4:6864183-6864202 Msa0146990:CDS 35.0%
TTTCCATACCCTTATAACCA+AGG - chr1_4:6864189-6864208 None:intergenic 35.0%
GCAATCTTATCTATGCAATC+AGG - chr1_4:6864226-6864245 None:intergenic 35.0%
GATGTCAAATTTCCATCATC+AGG - chr1_4:6864346-6864365 None:intergenic 35.0%
TTTCTGTCTTCATTCGTAGA+TGG - chr1_4:6864651-6864670 None:intergenic 35.0%
AGCTAGAAGAACAATTGCAA+AGG + chr1_4:6864734-6864753 Msa0146990:CDS 35.0%
TAAATTCCACTGTTGTGAAC+AGG - chr1_4:6864838-6864857 None:intergenic 35.0%
CACAACAGTGGAATTTATGT+TGG + chr1_4:6864841-6864860 Msa0146990:intron 35.0%
TGGTTTGAGTAAGAAAACGT+AGG + chr1_4:6864861-6864880 Msa0146990:intron 35.0%
TTCTATTTGAATGGAATCGG+TGG - chr1_4:6865078-6865097 None:intergenic 35.0%
TTCCATTCAAATAGAAAGCC+AGG + chr1_4:6865082-6865101 Msa0146990:intron 35.0%
AAATGGAATTAAATCCAGCC+TGG - chr1_4:6865103-6865122 None:intergenic 35.0%
ATATATGGTTTCCTGACACT+CGG - chr1_4:6865199-6865218 None:intergenic 35.0%
CAGGAAACCATATATCTTCT+TGG + chr1_4:6865204-6865223 Msa0146990:CDS 35.0%
!!! TTTTGGTTTTATGCAAAGGC+AGG + chr1_4:6865368-6865387 Msa0146990:CDS 35.0%
!!! TTTGGTTTTATGCAAAGGCA+GGG + chr1_4:6865369-6865388 Msa0146990:CDS 35.0%
ATTCATGATATGAGGCTACA+CGG + chr1_4:6865625-6865644 Msa0146990:three_prime_UTR 35.0%
GATTGTGTAGTTAAAGGAGA+GGG + chr1_4:6865715-6865734 Msa0146990:three_prime_UTR 35.0%
!! CAGAGTCTCTGAAATATTAC+AGG + chr1_4:6865846-6865865 Msa0146990:three_prime_UTR 35.0%
ATATTACCATTAAAGGGGTG+CGG + chr1_4:6865978-6865997 Msa0146990:three_prime_UTR 35.0%
TTGTGATATTAAGGAGGAGG+TGG - chr1_4:6860677-6860696 None:intergenic 40.0%
ATAAATGGGAGAGGTGGTTT+GGG - chr1_4:6860741-6860760 None:intergenic 40.0%
AATAAATGGGAGAGGTGGTT+TGG - chr1_4:6860742-6860761 None:intergenic 40.0%
GTCTCACACTTTGAATGCAT+TGG + chr1_4:6860982-6861001 Msa0146990:intron 40.0%
TGCACTAAGGTGAATAGTGT+CGG - chr1_4:6861152-6861171 None:intergenic 40.0%
ATATGGATAGAAGATGGCCT+TGG + chr1_4:6861369-6861388 Msa0146990:exon 40.0%
TGCATCTAATCAACCCAAAC+AGG + chr1_4:6861454-6861473 Msa0146990:CDS 40.0%
CAACGTATCAGTGTTATGTC+CGG + chr1_4:6861542-6861561 Msa0146990:intron 40.0%
TGTCTGTGTCAATGCTTCAT+TGG + chr1_4:6861565-6861584 Msa0146990:intron 40.0%
GTCTGTGTCAATGCTTCATT+GGG + chr1_4:6861566-6861585 Msa0146990:intron 40.0%
!! TTGCTTTTGCTTATGCAAGC+AGG + chr1_4:6861981-6862000 Msa0146990:intron 40.0%
GAGTCATATTCACATCTGAC+GGG + chr1_4:6862042-6862061 Msa0146990:CDS 40.0%
!! ATATTCACATCTGACGGGTT+TGG + chr1_4:6862047-6862066 Msa0146990:CDS 40.0%
AGAAAAGGTTCAGACACTTG+AGG + chr1_4:6862092-6862111 Msa0146990:CDS 40.0%
ACATGCTAAAGTAGCTGAAG+AGG + chr1_4:6862191-6862210 Msa0146990:CDS 40.0%
CGTTGCAAAAACCAAGCAAT+TGG + chr1_4:6862488-6862507 Msa0146990:CDS 40.0%
CAAGATTAAGGGTGATCTTG+AGG + chr1_4:6862512-6862531 Msa0146990:CDS 40.0%
TAGGATACGGAACTTTGAAC+AGG + chr1_4:6862536-6862555 Msa0146990:CDS 40.0%
ACTTTGAACAGGAACTTCTC+AGG + chr1_4:6862547-6862566 Msa0146990:CDS 40.0%
TGAAGAAAAAGCTCATGCTG+AGG + chr1_4:6862638-6862657 Msa0146990:CDS 40.0%
AATTAGAGGCTGAGTGTCAA+AGG + chr1_4:6862841-6862860 Msa0146990:CDS 40.0%
AAAGGTTACGTGGTCTAGTA+CGG + chr1_4:6862859-6862878 Msa0146990:CDS 40.0%
AAGCTGGAAGTTGAAAGTCT+TGG + chr1_4:6862918-6862937 Msa0146990:CDS 40.0%
ATCGAGTTTCGCCATAATCT+CGG - chr1_4:6862944-6862963 None:intergenic 40.0%
ATTATGGCGAAACTCGATTG+CGG + chr1_4:6862946-6862965 Msa0146990:CDS 40.0%
TGAGGACTAGAAGGTTTAAC+AGG - chr1_4:6862978-6862997 None:intergenic 40.0%
TTCTAGTCCTCATTTCTCTC+CGG + chr1_4:6862986-6863005 Msa0146990:CDS 40.0%
ATATTCTCGAGGGAGAAATC+AGG - chr1_4:6863014-6863033 None:intergenic 40.0%
! TACAGAGCGCTTATTGACAA+TGG + chr1_4:6863064-6863083 Msa0146990:CDS 40.0%
AAAACGTAACAGCGAATTGC+AGG + chr1_4:6863121-6863140 Msa0146990:CDS 40.0%
CAGACAAGTAATCAGCAGAA+GGG + chr1_4:6863203-6863222 Msa0146990:CDS 40.0%
GCTTTCATGGTTCATATGGA+TGG - chr1_4:6863243-6863262 None:intergenic 40.0%
! TTGCTGCATAGCCTGTATTT+TGG - chr1_4:6863274-6863293 None:intergenic 40.0%
CTCGGATATATCATCTTTGC+TGG - chr1_4:6863579-6863598 None:intergenic 40.0%
!! ATCACTCTTCTTTTCAGGCT+CGG - chr1_4:6863597-6863616 None:intergenic 40.0%
TGAAAAGCTATCAATCCCAC+GGG - chr1_4:6863675-6863694 None:intergenic 40.0%
GTGAAAAGCTATCAATCCCA+CGG - chr1_4:6863676-6863695 None:intergenic 40.0%
TGATGTAGGTAAGATCCTGA+AGG + chr1_4:6863751-6863770 Msa0146990:CDS 40.0%
GAATTTCAGCTACAGAGTCT+TGG - chr1_4:6863817-6863836 None:intergenic 40.0%
CATACACTCAGAAGGTTCTT+GGG - chr1_4:6863930-6863949 None:intergenic 40.0%
GTTATCTGCATACACTCAGA+AGG - chr1_4:6863938-6863957 None:intergenic 40.0%
AGATGGTATAAGCCAAAAGC+TGG + chr1_4:6864051-6864070 Msa0146990:CDS 40.0%
! ACTGTAGCAAACTTGCTTCA+TGG - chr1_4:6864111-6864130 None:intergenic 40.0%
TCGGGAGAGAGATATCAAAA+TGG + chr1_4:6864280-6864299 Msa0146990:CDS 40.0%
AGAGAAAGAGAAGGCAATTG+TGG + chr1_4:6864429-6864448 Msa0146990:CDS 40.0%
AACTTCAGCTAGAAGTTGCT+CGG - chr1_4:6864509-6864528 None:intergenic 40.0%
!! CATGCATTTGAGTTGAGTCT+CGG - chr1_4:6864572-6864591 None:intergenic 40.0%
! AGCCTGGCTTTCTATTTGAA+TGG - chr1_4:6865087-6865106 None:intergenic 40.0%
ATTCAAATAGAAAGCCAGGC+TGG + chr1_4:6865086-6865105 Msa0146990:intron 40.0%
TTGATCATAGGAGAGAGACT+TGG + chr1_4:6865152-6865171 Msa0146990:intron 40.0%
CTGCTTGCCAAGAAGATATA+TGG - chr1_4:6865214-6865233 None:intergenic 40.0%
CATCCTCAAACAGAACCAAT+GGG + chr1_4:6865246-6865265 Msa0146990:CDS 40.0%
TCACTGTACATAGATCCCAT+TGG - chr1_4:6865264-6865283 None:intergenic 40.0%
! GTACAGTGAGAAGCTTTTGA+AGG + chr1_4:6865275-6865294 Msa0146990:CDS 40.0%
!! GAGAAGCTTTTGAAGGTTGA+AGG + chr1_4:6865282-6865301 Msa0146990:CDS 40.0%
! TTGTGATTTGGATGGTGTAC+AGG - chr1_4:6865471-6865490 None:intergenic 40.0%
! TTGTAGGCTTGTGATTTGGA+TGG - chr1_4:6865479-6865498 None:intergenic 40.0%
GACTTTGTAGGCTTGTGATT+TGG - chr1_4:6865483-6865502 None:intergenic 40.0%
GGCTACACGGTAATGATATT+TGG + chr1_4:6865638-6865657 Msa0146990:three_prime_UTR 40.0%
AATGATATTTGGACAGCACC+AGG + chr1_4:6865649-6865668 Msa0146990:three_prime_UTR 40.0%
TGGGAGGATTGTGTAGTTAA+AGG + chr1_4:6865709-6865728 Msa0146990:three_prime_UTR 40.0%
GGATTGTGTAGTTAAAGGAG+AGG + chr1_4:6865714-6865733 Msa0146990:three_prime_UTR 40.0%
TAATAACCGCACCCCTTTAA+TGG - chr1_4:6865987-6866006 None:intergenic 40.0%
TATTAAGGAGGAGGTGGAAG+TGG - chr1_4:6860671-6860690 None:intergenic 45.0%
! GAGAGGTGGTTTGGGTTTAA+GGG - chr1_4:6860733-6860752 None:intergenic 45.0%
AAGGCCCAGATGGTAGAATT+TGG - chr1_4:6861078-6861097 None:intergenic 45.0%
! ACTAAGGTGAATAGTGTCGG+TGG - chr1_4:6861149-6861168 None:intergenic 45.0%
!! TGAAGCATTGACACAGACAC+CGG - chr1_4:6861564-6861583 None:intergenic 45.0%
TCTGTTCAAATTCTCCAGGC+TGG + chr1_4:6862295-6862314 Msa0146990:intron 45.0%
CTGTTCAAATTCTCCAGGCT+GGG + chr1_4:6862296-6862315 Msa0146990:intron 45.0%
AAATTCTCCAGGCTGGGAAA+AGG + chr1_4:6862302-6862321 Msa0146990:intron 45.0%
AAAGGCAGAAGCAGAAGCTT+TGG + chr1_4:6862320-6862339 Msa0146990:CDS 45.0%
TCTTTCGAAACTGACTGCTG+AGG + chr1_4:6862371-6862390 Msa0146990:CDS 45.0%
! GATCAGGTGTCACAGTTAGA+CGG + chr1_4:6862393-6862412 Msa0146990:CDS 45.0%
TTAAGGGTGATCTTGAGGCT+AGG + chr1_4:6862517-6862536 Msa0146990:CDS 45.0%
GTGATCTTGAGGCTAGGATA+CGG + chr1_4:6862523-6862542 Msa0146990:CDS 45.0%
AGCTGCTAACAAGCAGCATA+TGG + chr1_4:6862797-6862816 Msa0146990:CDS 45.0%
TGCTAACAAGCAGCATATGG+AGG + chr1_4:6862800-6862819 Msa0146990:CDS 45.0%
GCTAACAAGCAGCATATGGA+GGG + chr1_4:6862801-6862820 Msa0146990:CDS 45.0%
CTAGTACGGAAGAAGTTACC+TGG + chr1_4:6862873-6862892 Msa0146990:CDS 45.0%
TTCATTTGTGCAAGTGCAGC+AGG - chr1_4:6862900-6862919 None:intergenic 45.0%
TGCACTTGCACAAATGAAGC+TGG + chr1_4:6862902-6862921 Msa0146990:CDS 45.0%
GAAAGTCTTGGCCGAGATTA+TGG + chr1_4:6862930-6862949 Msa0146990:CDS 45.0%
GGAGAGAAATGAGGACTAGA+AGG - chr1_4:6862987-6863006 None:intergenic 45.0%
! CCTTCTGCTGATTACTTGTC+TGG - chr1_4:6863205-6863224 None:intergenic 45.0%
CCAGACAAGTAATCAGCAGA+AGG + chr1_4:6863202-6863221 Msa0146990:CDS 45.0%
TATTGCTGTCGACCAAGACT+CGG - chr1_4:6863345-6863364 None:intergenic 45.0%
TGACGAATTGGGCAAATCTG+AGG + chr1_4:6863403-6863422 Msa0146990:CDS 45.0%
! ACTGATGGATGACTTCCTAG+AGG + chr1_4:6863442-6863461 Msa0146990:CDS 45.0%
CAGCAAATTTCTCCACCTCT+AGG - chr1_4:6863460-6863479 None:intergenic 45.0%
CTAGAGGTGGAGAAATTTGC+TGG + chr1_4:6863458-6863477 Msa0146990:CDS 45.0%
GAAAAGCTATCAATCCCACG+GGG - chr1_4:6863674-6863693 None:intergenic 45.0%
ATGGCTAAGGATGCTGATGT+AGG + chr1_4:6863737-6863756 Msa0146990:CDS 45.0%
TTCAGCTACAGAGTCTTGGA+TGG - chr1_4:6863813-6863832 None:intergenic 45.0%
! TCACATGGAGTATCAGAAGC+TGG - chr1_4:6863851-6863870 None:intergenic 45.0%
GCATACACTCAGAAGGTTCT+TGG - chr1_4:6863931-6863950 None:intergenic 45.0%
TGGTATAAGCCAAAAGCTGG+AGG + chr1_4:6864054-6864073 Msa0146990:CDS 45.0%
! CAGAAAACTCCTCCAGCTTT+TGG - chr1_4:6864066-6864085 None:intergenic 45.0%
AATCCTGAGGTTCCTGATGA+TGG + chr1_4:6864331-6864350 Msa0146990:CDS 45.0%
TTTCCATCATCAGGAACCTC+AGG - chr1_4:6864337-6864356 None:intergenic 45.0%
CACGTCACAAAAGTTCTCCA+TGG + chr1_4:6864384-6864403 Msa0146990:CDS 45.0%
GTCACAAAAGTTCTCCATGG+AGG + chr1_4:6864387-6864406 Msa0146990:CDS 45.0%
CAATTCCTCAAAGTCCTCCA+TGG - chr1_4:6864404-6864423 None:intergenic 45.0%
! CACAATTGGCTTCTGCTCAA+AGG + chr1_4:6864533-6864552 Msa0146990:CDS 45.0%
CGAGACTCAACTCAAATGCA+TGG + chr1_4:6864570-6864589 Msa0146990:CDS 45.0%
ATCACTTGAAACACGTGCAC+AGG + chr1_4:6864606-6864625 Msa0146990:CDS 45.0%
GAGATCTCATGAAGCAGCTT+TGG + chr1_4:6864699-6864718 Msa0146990:CDS 45.0%
CATAATCCATTCCTACTCGC+AGG + chr1_4:6864812-6864831 Msa0146990:intron 45.0%
TGAAAAGTTAGCCGAGTGTC+AGG + chr1_4:6865185-6865204 Msa0146990:CDS 45.0%
GCATCCTCAAACAGAACCAA+TGG + chr1_4:6865245-6865264 Msa0146990:CDS 45.0%
!! GATCCCATTGGTTCTGTTTG+AGG - chr1_4:6865252-6865271 None:intergenic 45.0%
CCACCTGATCCTGCAAATTT+GGG - chr1_4:6865332-6865351 None:intergenic 45.0%
TCCACCTGATCCTGCAAATT+TGG - chr1_4:6865333-6865352 None:intergenic 45.0%
TGGATGGTGTACAGGAGATA+TGG - chr1_4:6865463-6865482 None:intergenic 45.0%
! GATGAAGAGGCTGACTTTGT+AGG - chr1_4:6865495-6865514 None:intergenic 45.0%
AGTGGAAGAAGCTGATGAAG+AGG - chr1_4:6865508-6865527 None:intergenic 45.0%
! ATGTTTTTCCGGTGTAGGAG+TGG - chr1_4:6865526-6865545 None:intergenic 45.0%
ACTCCTACACCGGAAAAACA+TGG + chr1_4:6865525-6865544 Msa0146990:CDS 45.0%
! AAACCTCGGCCATGTTTTTC+CGG - chr1_4:6865537-6865556 None:intergenic 45.0%
! AACCGGTCATTGAGCTTTTG+CGG + chr1_4:6865584-6865603 Msa0146990:exon 45.0%
! ATTGAGCTTTTGCGGCATAC+AGG + chr1_4:6865592-6865611 Msa0146990:exon 45.0%
AACGAAATTGAGCTTGTGGG+AGG + chr1_4:6865693-6865712 Msa0146990:three_prime_UTR 45.0%
!! TAATTAAAATTATTAATAGA+AGG - chr1_4:6860849-6860868 None:intergenic 5.0%
!! TATTAATATTATTATGAAAT+GGG - chr1_4:6861031-6861050 None:intergenic 5.0%
!! TTATTAATATTATTATGAAA+TGG - chr1_4:6861032-6861051 None:intergenic 5.0%
! GGAGAGGTGGTTTGGGTTTA+AGG - chr1_4:6860734-6860753 None:intergenic 50.0%
ACAAACAGAGAAGGCCCAGA+TGG - chr1_4:6861088-6861107 None:intergenic 50.0%
!! AAGGTGAATAGTGTCGGTGG+TGG - chr1_4:6861146-6861165 None:intergenic 50.0%
GTTGCTGAATTGGACTCTGC+TGG + chr1_4:6861431-6861450 Msa0146990:CDS 50.0%
!! TTCACATCTGACGGGTTTGG+AGG + chr1_4:6862050-6862069 Msa0146990:CDS 50.0%
GAAACTGACTGCTGAGGATC+AGG + chr1_4:6862377-6862396 Msa0146990:CDS 50.0%
! CAGGTCTGCTGCTGATAATG+CGG + chr1_4:6862566-6862585 Msa0146990:CDS 50.0%
! CTGATAATGCGGCTCTGTCT+AGG + chr1_4:6862577-6862596 Msa0146990:CDS 50.0%
GCTGAGTGTCAAAGGTTACG+TGG + chr1_4:6862849-6862868 Msa0146990:CDS 50.0%
GATGGATGACTTCCTAGAGG+TGG + chr1_4:6863445-6863464 Msa0146990:CDS 50.0%
!! GGAGACTCTTGGCTTTGCAA+TGG - chr1_4:6863626-6863645 None:intergenic 50.0%
ATCAGAAGCTGGCACATCGA+CGG - chr1_4:6863840-6863859 None:intergenic 50.0%
! CACGACTTCGTGTTGTTCCT+TGG + chr1_4:6863989-6864008 Msa0146990:CDS 50.0%
CTGTCATTGCTTCTCTGCCA+AGG - chr1_4:6864009-6864028 None:intergenic 50.0%
CAATCCCTGCTCTAATCCTG+AGG + chr1_4:6864318-6864337 Msa0146990:CDS 50.0%
GGAACCTCAGGATTAGAGCA+GGG - chr1_4:6864325-6864344 None:intergenic 50.0%
AGGAACCTCAGGATTAGAGC+AGG - chr1_4:6864326-6864345 None:intergenic 50.0%
GTTCTCCATGGAGGACTTTG+AGG + chr1_4:6864396-6864415 Msa0146990:CDS 50.0%
! AGCAGCTTTGGCAAAGTGCA+AGG + chr1_4:6864711-6864730 Msa0146990:CDS 50.0%
! GCTTCACAGAGCATCAACCT+CGG + chr1_4:6865304-6865323 Msa0146990:CDS 50.0%
GAGCCCAAATTTGCAGGATC+AGG + chr1_4:6865326-6865345 Msa0146990:CDS 50.0%
CCCAAATTTGCAGGATCAGG+TGG + chr1_4:6865329-6865348 Msa0146990:CDS 50.0%
TTTGCAGGATCAGGTGGAGA+TGG + chr1_4:6865335-6865354 Msa0146990:CDS 50.0%
!! GAGATGGACGGAGCTAGTTT+TGG + chr1_4:6865351-6865370 Msa0146990:CDS 50.0%
AGCTTCTTCCACTCCTACAC+CGG + chr1_4:6865515-6865534 Msa0146990:CDS 50.0%
TGCCGCAAAAGCTCAATGAC+CGG - chr1_4:6865589-6865608 None:intergenic 50.0%
!! GGTGGAAGTGGTAGTGGTAG+TGG - chr1_4:6860659-6860678 None:intergenic 55.0%
GTAGCTGAAGAGGCTGTCTC+AGG + chr1_4:6862201-6862220 Msa0146990:CDS 55.0%
! CATGTTAGAGCGCTCCTGCA+AGG - chr1_4:6862604-6862623 None:intergenic 55.0%
!! TCAGGCACCGGAGAGAAATG+AGG - chr1_4:6862996-6863015 None:intergenic 55.0%
TCGAGGGAGAAATCAGGCAC+CGG - chr1_4:6863008-6863027 None:intergenic 55.0%
CGAGAAGTTGTGCCGAGTCT+TGG + chr1_4:6863330-6863349 Msa0146990:CDS 55.0%
ATCCTGCAGCAGGAGACTCT+TGG - chr1_4:6863637-6863656 None:intergenic 55.0%
TATCAATCCCACGGGGACTG+GGG - chr1_4:6863667-6863686 None:intergenic 55.0%
CTATCAATCCCACGGGGACT+GGG - chr1_4:6863668-6863687 None:intergenic 55.0%
TCAGAAGCTGGCACATCGAC+GGG - chr1_4:6863839-6863858 None:intergenic 55.0%
AACAGGCCTGCGAGTAGGAA+TGG - chr1_4:6864821-6864840 None:intergenic 55.0%
TTGTGAACAGGCCTGCGAGT+AGG - chr1_4:6864826-6864845 None:intergenic 55.0%
ACCTCGGAGCCCAAATTTGC+AGG + chr1_4:6865320-6865339 Msa0146990:CDS 55.0%
TCCTGCAAATTTGGGCTCCG+AGG - chr1_4:6865324-6865343 None:intergenic 55.0%
CAGGATCAGGTGGAGATGGA+CGG + chr1_4:6865339-6865358 Msa0146990:CDS 55.0%
! CGGCCATGTTTTTCCGGTGT+AGG - chr1_4:6865531-6865550 None:intergenic 55.0%
ACACCGGAAAAACATGGCCG+AGG + chr1_4:6865531-6865550 Msa0146990:CDS 55.0%
TCATGAAGGGGTTCGCAACC+TGG - chr1_4:6865670-6865689 None:intergenic 55.0%
!! GAGAGGGTGCCATGAATGTC+TGG + chr1_4:6865731-6865750 Msa0146990:three_prime_UTR 55.0%
GGAGGAGGTGGAAGTGGTAG+TGG - chr1_4:6860665-6860684 None:intergenic 60.0%
! GCTTCTGCCTTTTCCCAGCC+TGG - chr1_4:6862312-6862331 None:intergenic 60.0%
GGCTCTGTCTAGGTCCTTGC+AGG + chr1_4:6862587-6862606 Msa0146990:CDS 60.0%
TGTGCAAGTGCAGCAGGACC+AGG - chr1_4:6862894-6862913 None:intergenic 60.0%
AGCCAAGAGTCTCCTGCTGC+AGG + chr1_4:6863632-6863651 Msa0146990:CDS 60.0%
ATCAATCCCACGGGGACTGG+GGG - chr1_4:6863666-6863685 None:intergenic 60.0%
GCTATCAATCCCACGGGGAC+TGG - chr1_4:6863669-6863688 None:intergenic 60.0%
CGCAGGCCTGTTCACAACAG+TGG + chr1_4:6864829-6864848 Msa0146990:intron 60.0%
! GGGGCTGGTGATCCTGCAGC+AGG - chr1_4:6863647-6863666 None:intergenic 70.0%
TCACCAGCCCCCAGTCCCCG+TGG + chr1_4:6863656-6863675 Msa0146990:CDS 75.0%
CACCAGCCCCCAGTCCCCGT+GGG + chr1_4:6863657-6863676 Msa0146990:CDS 75.0%
ATCCCACGGGGACTGGGGGC+TGG - chr1_4:6863662-6863681 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6860586 6866019 6860586 ID=Msa0146990;Name=Msa0146990
chr1_4 mRNA 6860586 6866019 6860586 ID=Msa0146990-mRNA-1;Parent=Msa0146990;Name=Msa0146990-mRNA-1;_AED=0.03;_eAED=0.03;_QI=240|1|1|1|0.66|0.57|7|423|1081
chr1_4 exon 6860586 6860773 6860586 ID=Msa0146990-mRNA-1:exon:2973;Parent=Msa0146990-mRNA-1
chr1_4 exon 6860794 6860814 6860794 ID=Msa0146990-mRNA-1:exon:2974;Parent=Msa0146990-mRNA-1
chr1_4 exon 6861340 6861475 6861340 ID=Msa0146990-mRNA-1:exon:2975;Parent=Msa0146990-mRNA-1
chr1_4 exon 6862003 6862222 6862003 ID=Msa0146990-mRNA-1:exon:2976;Parent=Msa0146990-mRNA-1
chr1_4 exon 6862313 6864755 6862313 ID=Msa0146990-mRNA-1:exon:2977;Parent=Msa0146990-mRNA-1
chr1_4 exon 6865027 6865069 6865027 ID=Msa0146990-mRNA-1:exon:2978;Parent=Msa0146990-mRNA-1
chr1_4 exon 6865162 6866019 6865162 ID=Msa0146990-mRNA-1:exon:2979;Parent=Msa0146990-mRNA-1
chr1_4 five_prime_UTR 6860586 6860773 6860586 ID=Msa0146990-mRNA-1:five_prime_utr;Parent=Msa0146990-mRNA-1
chr1_4 five_prime_UTR 6860794 6860814 6860794 ID=Msa0146990-mRNA-1:five_prime_utr;Parent=Msa0146990-mRNA-1
chr1_4 five_prime_UTR 6861340 6861370 6861340 ID=Msa0146990-mRNA-1:five_prime_utr;Parent=Msa0146990-mRNA-1
chr1_4 CDS 6861371 6861475 6861371 ID=Msa0146990-mRNA-1:cds;Parent=Msa0146990-mRNA-1
chr1_4 CDS 6862003 6862222 6862003 ID=Msa0146990-mRNA-1:cds;Parent=Msa0146990-mRNA-1
chr1_4 CDS 6862313 6864755 6862313 ID=Msa0146990-mRNA-1:cds;Parent=Msa0146990-mRNA-1
chr1_4 CDS 6865027 6865069 6865027 ID=Msa0146990-mRNA-1:cds;Parent=Msa0146990-mRNA-1
chr1_4 CDS 6865162 6865596 6865162 ID=Msa0146990-mRNA-1:cds;Parent=Msa0146990-mRNA-1
chr1_4 three_prime_UTR 6865597 6866019 6865597 ID=Msa0146990-mRNA-1:three_prime_utr;Parent=Msa0146990-mRNA-1
Gene Sequence

>Msa0146990

ATGGATAGAAGATGGCCTTGGAAGAAAAAATCATCTGATAAAACTGTGCTTGAGAAAGTTGTTGCTGAATTGGACTCTGCTGGTGCATCTAATCAACCCAAACAGGATGTTTATAAGAAGCCGAACTATGTCCAAATTTCTGTAGAGTCATATTCACATCTGACGGGTTTGGAGGATCAAGTGAAGACATATGAAGAAAAGGTTCAGACACTTGAGGATGAGATCAATGAATTAAATGAAAAACTGTCAGCAGCAAACACAGAGATAAATACTAAGGAAGCTTTGGTAAAACAACATGCTAAAGTAGCTGAAGAGGCTGTCTCAGGCTGGGAAAAGGCAGAAGCAGAAGCTTTGGCGTTGAAGAACAGTCTAGAATCTGTCACTCTTTCGAAACTGACTGCTGAGGATCAGGTGTCACAGTTAGACGGTGCTCTTAAAGAGTGTATGCGACAGATAAGAAACCTGAAAGAAGAACATGAACTGAAAATACAGGATATTTCCGTTGCAAAAACCAAGCAATTGGACAAGATTAAGGGTGATCTTGAGGCTAGGATACGGAACTTTGAACAGGAACTTCTCAGGTCTGCTGCTGATAATGCGGCTCTGTCTAGGTCCTTGCAGGAGCGCTCTAACATGCTAGTAAAACTAAGTGAAGAAAAAGCTCATGCTGAGGCTGAAATTGAGCATCAAAAGAACACCGTAGAATCATGTGAAAGAGAAATCAATTCACTTAAATATGAGCTGCATGTTATTTCCAAAGAGCTTGAAATTCGCAATGAAGAAAAGAACATGAGTATGAGGTCTGCAGAAGCTGCTAACAAGCAGCATATGGAGGGTGTTAAAAAAATTGCTAAATTAGAGGCTGAGTGTCAAAGGTTACGTGGTCTAGTACGGAAGAAGTTACCTGGTCCTGCTGCACTTGCACAAATGAAGCTGGAAGTTGAAAGTCTTGGCCGAGATTATGGCGAAACTCGATTGCGGAAATCTCCTGTTAAACCTTCTAGTCCTCATTTCTCTCCGGTGCCTGATTTCTCCCTCGAGAATATACAGAAATTCCAGAAAGATAATGAATTTCTTACAGAGCGCTTATTGACAATGGAAGAAGAAACAAAGATGCTGAAAGAAGCTTTGTCAAAACGTAACAGCGAATTGCAGGCATCAAGAAGTATGTGTGCCAAAACACTTAGCAAACTTCAAATTTTGGAAGCACAAGGCCAGACAAGTAATCAGCAGAAGGGATCTCCAAAATCTCCCATCCATATGAACCATGAAAGCATATACAGCCAAAATACAGGCTATGCAGCAAGCATGATCTCCATTTCTGAAGATGGTAATGATGATGCGAGAAGTTGTGCCGAGTCTTGGTCGACAGCAATAATCTCTGAGCTATCCCAACTCCCAAAAGAAAAGAATGCTGACGAATTGGGCAAATCTGAGGCGACTAAGAAGTTAGAACTGATGGATGACTTCCTAGAGGTGGAGAAATTTGCTGGATTATCAAATGATTCTAATGAAGACACCTCTTTGCCATTTACTTCAAACAATAAGACAGACGAAATCATGACCAATGATGTATCTGAAGTCAGTACCAGCAAAGATGATATATCCGAGCCTGAAAAGAAGAGTGATTTGAATCCATTGCAAAGCCAAGAGTCTCCTGCTGCAGGATCACCAGCCCCCAGTCCCCGTGGGATTGATAGCTTTTCACCAGCAGATCTTCAATCAAGAATACTGTCAGTGTTTGAATCTATGGCTAAGGATGCTGATGTAGGTAAGATCCTGAAGGATATTAAACATGTTCTTGAAGAAGTACATGATACTTCCATCCAAGACTCTGTAGCTGAAATTCCCGTCGATGTGCCAGCTTCTGATACTCCATGTGATAAAAAGGATGATCCTGAAGATTTTGGTTCAGTTTCAGAAAAAGAACTTACATCATCCCAAGAACCTTCTGAGTGTATGCAGATAACTTCTGATATAGAAGCTGCAATTTCTCAAATTCACGACTTCGTGTTGTTCCTTGGCAGAGAAGCAATGACAGTTCATGATATATCTTCTGATGGAGATGGTATAAGCCAAAAGCTGGAGGAGTTTTCTGTTACTTATAATAAAGTCAAATGCCATGAAGCAAGTTTGCTACAGTTTGTTCTTGATCTGTCTCATTTCTTGGCTAAAACAAGTGAATTCAGATTTAATATCCTTGGTTATAAGGGTATGGAAACTGAAACTAACAGTCCTGATTGCATAGATAAGATTGCTCTGCCTGAAAATAAGTTAGTTCAAGAAAATTCGTCGGGAGAGAGATATCAAAATGGTCATTCTCATATTCTCAATCCCTGCTCTAATCCTGAGGTTCCTGATGATGGAAATTTGACATCAAGTTATGAATCAAATGTCACGTCACAAAAGTTCTCCATGGAGGACTTTGAGGAATTGAGATTAGAGAAAGAGAAGGCAATTGTGGATCTGTCAAAATATTCTGAAAATCTTGAAATGACAAAATCTCAGTTACAAGAGACCGAGCAACTTCTAGCTGAAGTTAAATCACAATTGGCTTCTGCTCAAAGGTCAAACAGCTTGTCCGAGACTCAACTCAAATGCATGGCAGAGTCATACAGATCACTTGAAACACGTGCACAGGAGTTTGAAACTGAGCTCAACCATCTACGAATGAAGACAGAAACTCTTGAGAATGAACTTAAAGATGAAAAGAGATCTCATGAAGCAGCTTTGGCAAAGTGCAAGGAGCTAGAAGAACAATTGCAAAGGAATGAGAGTTCAGCTGCTGATAATGAAATTCAGACTAAAAAGGAGAGAGACTTGGCTTCTGCTGCTGAAAAGTTAGCCGAGTGTCAGGAAACCATATATCTTCTTGGCAAGCAGCTAAAAGCTATGCATCCTCAAACAGAACCAATGGGATCTATGTACAGTGAGAAGCTTTTGAAGGTTGAAGGCTTCACAGAGCATCAACCTCGGAGCCCAAATTTGCAGGATCAGGTGGAGATGGACGGAGCTAGTTTTGGTTTTATGCAAAGGCAGGGTGCAGAGTCCCCTTTGCATTTTACAAACACTTTATATAGTCCATCAGATAATGACTCAAACTTTCAAGCCATATCTCCTGTACACCATCCAAATCACAAGCCTACAAAGTCAGCCTCTTCATCAGCTTCTTCCACTCCTACACCGGAAAAACATGGCCGAGGTTTTAGCAGATTCTTTTCATCAAAAGGAAAAACCGGTCATTGA
Protein sequence

>Msa0146990

MDRRWPWKKKSSDKTVLEKVVAELDSAGASNQPKQDVYKKPNYVQISVESYSHLTGLEDQVKTYEEKVQTLEDEINELNEKLSAANTEINTKEALVKQHAKVAEEAVSGWEKAEAEALALKNSLESVTLSKLTAEDQVSQLDGALKECMRQIRNLKEEHELKIQDISVAKTKQLDKIKGDLEARIRNFEQELLRSAADNAALSRSLQERSNMLVKLSEEKAHAEAEIEHQKNTVESCEREINSLKYELHVISKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVESLGRDYGETRLRKSPVKPSSPHFSPVPDFSLENIQKFQKDNEFLTERLLTMEEETKMLKEALSKRNSELQASRSMCAKTLSKLQILEAQGQTSNQQKGSPKSPIHMNHESIYSQNTGYAASMISISEDGNDDARSCAESWSTAIISELSQLPKEKNADELGKSEATKKLELMDDFLEVEKFAGLSNDSNEDTSLPFTSNNKTDEIMTNDVSEVSTSKDDISEPEKKSDLNPLQSQESPAAGSPAPSPRGIDSFSPADLQSRILSVFESMAKDADVGKILKDIKHVLEEVHDTSIQDSVAEIPVDVPASDTPCDKKDDPEDFGSVSEKELTSSQEPSECMQITSDIEAAISQIHDFVLFLGREAMTVHDISSDGDGISQKLEEFSVTYNKVKCHEASLLQFVLDLSHFLAKTSEFRFNILGYKGMETETNSPDCIDKIALPENKLVQENSSGERYQNGHSHILNPCSNPEVPDDGNLTSSYESNVTSQKFSMEDFEELRLEKEKAIVDLSKYSENLEMTKSQLQETEQLLAEVKSQLASAQRSNSLSETQLKCMAESYRSLETRAQEFETELNHLRMKTETLENELKDEKRSHEAALAKCKELEEQLQRNESSAADNEIQTKKERDLASAAEKLAECQETIYLLGKQLKAMHPQTEPMGSMYSEKLLKVEGFTEHQPRSPNLQDQVEMDGASFGFMQRQGAESPLHFTNTLYSPSDNDSNFQAISPVHHPNHKPTKSASSSASSTPTPEKHGRGFSRFFSSKGKTGH*