Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270030 | XP_003592876.1 | 98.010 | 402 | 2 | 1 | 62 | 457 | 1 | 402 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0131050 | Msa0270030 | 0.826754 | 2.280368e-54 | -8.615850e-47 |
| Msa0138390 | Msa0270030 | 0.826070 | 3.318479e-54 | -8.615850e-47 |
| Msa0146990 | Msa0270030 | 0.809545 | 1.794751e-50 | -8.615850e-47 |
| Msa0240450 | Msa0270030 | 0.821282 | 4.386931e-53 | -8.615850e-47 |
| Msa0270030 | Msa0376450 | 0.823461 | 1.368304e-53 | -8.615850e-47 |
| Msa0270030 | Msa0377320 | 0.815311 | 9.867194e-52 | -8.615850e-47 |
| Msa0270030 | Msa0425120 | 0.809438 | 1.892291e-50 | -8.615850e-47 |
| Msa0270030 | Msa0471720 | 0.825660 | 4.153532e-54 | -8.615850e-47 |
| Msa0270030 | Msa0474330 | 0.800463 | 1.424419e-48 | -8.615850e-47 |
| Msa0270030 | Msa0516510 | 0.820457 | 6.791042e-53 | -8.615850e-47 |
| Msa0270030 | Msa0518750 | 0.813915 | 2.009630e-51 | -8.615850e-47 |
| Msa0270030 | Msa0967650 | 0.825802 | 3.842890e-54 | -8.615850e-47 |
| Msa0270030 | Msa1098180 | 0.859918 | 2.965397e-63 | -8.615850e-47 |
| Msa0270030 | Msa1119250 | 0.857880 | 1.206976e-62 | -8.615850e-47 |
| Msa0270030 | Msa1119300 | 0.859772 | 3.281768e-63 | -8.615850e-47 |
| Msa0270030 | Msa1138240 | 0.865571 | 5.363539e-65 | -8.615850e-47 |
| Msa0270030 | Msa1351640 | 0.971465 | 3.308513e-133 | -8.615850e-47 |
| Msa0270030 | Msa1375060 | 0.987050 | 7.002399e-169 | -8.615850e-47 |
| Msa0270030 | Msa1392330 | 0.987038 | 7.749826e-169 | -8.615850e-47 |
| Msa0270030 | Msa1452090 | 0.819048 | 1.425297e-52 | -8.615850e-47 |
| Msa0270030 | Msa1460820 | 0.986310 | 2.314864e-166 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270030 | MtrunA17_Chr2g0276811 | 97.518 | 282 | 1 | 1 | 182 | 457 | 46 | 327 | 0.0 | 553 |
| Msa0270030 | MtrunA17_Chr2g0276811 | 78.689 | 61 | 12 | 1 | 62 | 121 | 1 | 61 | 2.19e-14 | 73.9 |
| Msa0270030 | MtrunA17_Chr4g0042531 | 70.027 | 367 | 93 | 2 | 40 | 400 | 7 | 362 | 0.0 | 513 |
| Msa0270030 | MtrunA17_Chr4g0042541 | 71.507 | 365 | 86 | 3 | 40 | 397 | 7 | 360 | 0.0 | 513 |
| Msa0270030 | MtrunA17_Chr3g0127551 | 30.565 | 301 | 185 | 6 | 64 | 355 | 7 | 292 | 9.96e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270030 | AT1G57680.3 | 56.286 | 350 | 142 | 3 | 62 | 401 | 1 | 349 | 2.11e-119 | 353 |
| Msa0270030 | AT1G57680.1 | 56.286 | 350 | 142 | 3 | 62 | 401 | 1 | 349 | 2.11e-119 | 353 |
| Msa0270030 | AT1G57680.2 | 56.286 | 350 | 142 | 3 | 62 | 401 | 1 | 349 | 2.11e-119 | 353 |
Find 116 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCACTTGTATGTTGTTC+TGG | 0.136495 | 2_3:+1332406 | Msa0270030:CDS |
| CACAAGCCCCAGAGGATTTC+TGG | 0.199571 | 2_3:+1331537 | Msa0270030:CDS |
| GTTGAATAAAACCTTGATTA+TGG | 0.209985 | 2_3:-1331724 | None:intergenic |
| AATCAATCTTAGAGCATTTC+TGG | 0.238365 | 2_3:+1331374 | Msa0270030:CDS |
| TTACTTAGTACCGTTCTTCT+TGG | 0.246463 | 2_3:+1332175 | Msa0270030:CDS |
| TTTGTGTTTCCTTCCATTAA+GGG | 0.263956 | 2_3:+1332309 | Msa0270030:CDS |
| CATTCATCTTATTTGTAATC+TGG | 0.268286 | 2_3:+1331783 | Msa0270030:CDS |
| GACGTGCCCTTCACTTAAAA+TGG | 0.278233 | 2_3:+1331843 | Msa0270030:CDS |
| ACCTCAGTTAGACAAGAATA+AGG | 0.305847 | 2_3:+1332075 | Msa0270030:CDS |
| GGGGTCTAGGTGAAATTATT+AGG | 0.311728 | 2_3:+1331807 | Msa0270030:CDS |
| CTGGAATTATGAGCAGAAAA+TGG | 0.319368 | 2_3:+1331975 | Msa0270030:CDS |
| GAATGCTTCGGCAGCAAATC+TGG | 0.324517 | 2_3:-1331615 | None:intergenic |
| TTGCACTTGTATGTTGTTCT+GGG | 0.341889 | 2_3:+1332407 | Msa0270030:CDS |
| CATGCGTGGAATCTGTATTT+CGG | 0.345778 | 2_3:+1331579 | Msa0270030:CDS |
| CCCGGATCACCGTCACTTCC+AGG | 0.354198 | 2_3:+1332733 | Msa0270030:CDS |
| TCAACAAAGGTTTACAGAAA+AGG | 0.373868 | 2_3:+1332263 | Msa0270030:CDS |
| TTTGTAATCTGGTGGGGTCT+AGG | 0.374213 | 2_3:+1331794 | Msa0270030:CDS |
| ATGCGTGGAATCTGTATTTC+GGG | 0.375518 | 2_3:+1331580 | Msa0270030:CDS |
| CAACAAAGGTTTACAGAAAA+GGG | 0.378116 | 2_3:+1332264 | Msa0270030:CDS |
| CAAACCAAGAAGAATCAAAA+TGG | 0.383211 | 2_3:-1331663 | None:intergenic |
| GGGTGGTGTTGCACTACGGC+TGG | 0.385070 | 2_3:-1332713 | None:intergenic |
| ACCTGGAAGTGACGGTGATC+CGG | 0.386511 | 2_3:-1332734 | None:intergenic |
| TATCACTAGCCAGAGTCATT+TGG | 0.389755 | 2_3:+1332549 | Msa0270030:CDS |
| AGTTGCAGATTGTTTAGCTC+TGG | 0.392033 | 2_3:+1332459 | Msa0270030:CDS |
| AAGTCAGGATAATGGCAAAA+AGG | 0.395416 | 2_3:-1332198 | None:intergenic |
| GAAAAGGGTGTTGCTTCAAC+TGG | 0.400149 | 2_3:+1332661 | Msa0270030:CDS |
| CCTGGAAGTGACGGTGATCC+GGG | 0.407160 | 2_3:-1332733 | None:intergenic |
| ATGGCACAATAACTTGGGTT+GGG | 0.415265 | 2_3:-1332771 | None:intergenic |
| CATCTTATTTGTAATCTGGT+GGG | 0.424700 | 2_3:+1331787 | Msa0270030:CDS |
| AGATTTGCTGCCGAAGCATT+CGG | 0.431030 | 2_3:+1331617 | Msa0270030:CDS |
| AACTTGGGTTGGGGATTGCA+TGG | 0.433060 | 2_3:-1332761 | None:intergenic |
| AATGACTCTGGCTAGTGATA+AGG | 0.433949 | 2_3:-1332546 | None:intergenic |
| GTCCACAAACCCACTTGCTT+CGG | 0.437337 | 2_3:-1330552 | None:intergenic |
| TCATCTTATTTGTAATCTGG+TGG | 0.438642 | 2_3:+1331786 | Msa0270030:CDS |
| ATGACTCTGGCTAGTGATAA+GGG | 0.438994 | 2_3:-1332545 | None:intergenic |
| CCGTGCACCCTTGCAGAGGT+TGG | 0.447505 | 2_3:+1331949 | Msa0270030:CDS |
| ATCTTATTTGTAATCTGGTG+GGG | 0.453260 | 2_3:+1331788 | Msa0270030:CDS |
| CGCTCTCGAATCCATAATCA+AGG | 0.454403 | 2_3:+1331713 | Msa0270030:CDS |
| TGTGGACGAAGCGGAAGGTT+CGG | 0.455528 | 2_3:+1330568 | Msa0270030:CDS |
| GCTGCTATGGCACAATAACT+TGG | 0.457884 | 2_3:-1332777 | None:intergenic |
| CCCTTGCAGAGGTTGGAGAC+TGG | 0.459243 | 2_3:+1331956 | Msa0270030:CDS |
| TGTGATGAGTGGGACTTTGT+TGG | 0.460396 | 2_3:-1330617 | None:intergenic |
| GAAATACAAGTGTGAGGAAG+AGG | 0.466208 | 2_3:-1331922 | None:intergenic |
| CATGGATACCAGAAATCCTC+TGG | 0.469355 | 2_3:-1331545 | None:intergenic |
| GAAGAACGGTACTAAGTAAA+GGG | 0.471576 | 2_3:-1332171 | None:intergenic |
| CTTCGGCAGCAAATCTGGAC+AGG | 0.473877 | 2_3:-1331610 | None:intergenic |
| GACCGAAGCAAGTGGGTTTG+TGG | 0.475339 | 2_3:+1330550 | Msa0270030:CDS |
| AGAGCTAAACAATCTGCAAC+TGG | 0.476529 | 2_3:-1332457 | None:intergenic |
| GTTGCAGATTGTTTAGCTCT+GGG | 0.488179 | 2_3:+1332460 | Msa0270030:CDS |
| AGAAGAACGGTACTAAGTAA+AGG | 0.495985 | 2_3:-1332172 | None:intergenic |
| GGGGATTGCATGGGCCAACC+TGG | 0.496851 | 2_3:-1332751 | None:intergenic |
| TATGGCACAATAACTTGGGT+TGG | 0.509350 | 2_3:-1332772 | None:intergenic |
| AAGGTAGGAAGTCAGGATAA+TGG | 0.511696 | 2_3:-1332206 | None:intergenic |
| TGTCACCACACCGAATGCTT+CGG | 0.512183 | 2_3:-1331627 | None:intergenic |
| CGGAGGATACAGCTGGAGAC+AGG | 0.515319 | 2_3:+1330588 | Msa0270030:CDS |
| TGGCACAATAACTTGGGTTG+GGG | 0.518698 | 2_3:-1332770 | None:intergenic |
| CCTCAGTTAGACAAGAATAA+GGG | 0.519352 | 2_3:+1332076 | Msa0270030:CDS |
| GAAAATGCCCGGCTTAGTCC+TGG | 0.529972 | 2_3:+1332586 | Msa0270030:CDS |
| CATTATCTTCCAAATGACTC+TGG | 0.530554 | 2_3:-1332558 | None:intergenic |
| CCAACCTCTGCAAGGGTGCA+CGG | 0.530849 | 2_3:-1331949 | None:intergenic |
| GCTTCAAACATAAAATGCTC+AGG | 0.535570 | 2_3:-1332364 | None:intergenic |
| AAAAGCTGAAGAAGAAACAT+TGG | 0.535607 | 2_3:-1332037 | None:intergenic |
| GGTGGTGTTGCACTACGGCT+GGG | 0.535611 | 2_3:-1332712 | None:intergenic |
| TCCTCCGTGCACCCTTGCAG+AGG | 0.540397 | 2_3:+1331945 | Msa0270030:CDS |
| ACTTGGGTTGGGGATTGCAT+GGG | 0.547759 | 2_3:-1332760 | None:intergenic |
| AATACCTACCAGGACTAAGC+CGG | 0.548682 | 2_3:-1332594 | None:intergenic |
| TCCAGTCTCCAACCTCTGCA+AGG | 0.553487 | 2_3:-1331957 | None:intergenic |
| GAAGGTTCGGAGGATACAGC+TGG | 0.553936 | 2_3:+1330581 | Msa0270030:CDS |
| CACTACGGCTGGGAGAGAAA+AGG | 0.561488 | 2_3:-1332702 | None:intergenic |
| ATCTACAAGACTTGGAAGCT+AGG | 0.563095 | 2_3:+1332485 | Msa0270030:CDS |
| ATCCGGGTGGTGTTGCACTA+CGG | 0.565464 | 2_3:-1332717 | None:intergenic |
| AGCCGTAGTGCAACACCACC+CGG | 0.570029 | 2_3:+1332715 | Msa0270030:CDS |
| TGCCCTTCACTTAAAATGGA+AGG | 0.570691 | 2_3:+1331847 | Msa0270030:CDS |
| TAAGTAAAGGGTAAGTACAC+AGG | 0.570980 | 2_3:-1332159 | None:intergenic |
| ATGTTATATTGTATCCAACA+TGG | 0.571201 | 2_3:+1331883 | Msa0270030:CDS |
| TCTGGGAAATCTACAAGACT+TGG | 0.572100 | 2_3:+1332477 | Msa0270030:CDS |
| ATGGATACCAGAAATCCTCT+GGG | 0.580053 | 2_3:-1331544 | None:intergenic |
| TTCGGCAGCAAATCTGGACA+GGG | 0.581106 | 2_3:-1331609 | None:intergenic |
| GATTCATCTGAATACCTACC+AGG | 0.582625 | 2_3:-1332604 | None:intergenic |
| TTGAAATTAGTCATCAACAA+AGG | 0.583602 | 2_3:+1332250 | Msa0270030:CDS |
| TGTTATATTGTATCCAACAT+GGG | 0.587232 | 2_3:+1331884 | Msa0270030:CDS |
| AATGCAATTCTAATAATCCA+AGG | 0.594476 | 2_3:-1331764 | None:intergenic |
| ATACCTACCAGGACTAAGCC+GGG | 0.594514 | 2_3:-1332593 | None:intergenic |
| GATCACCGTCACTTCCAGGT+TGG | 0.595185 | 2_3:+1332737 | Msa0270030:CDS |
| TCAGATGAATCAACAAAGCG+TGG | 0.595190 | 2_3:+1332616 | Msa0270030:CDS |
| ACGCATGCTCTCTGACAGCA+TGG | 0.601326 | 2_3:-1331563 | None:intergenic |
| CCAGTCTCCAACCTCTGCAA+GGG | 0.602446 | 2_3:-1331956 | None:intergenic |
| CTGCTATGGCACAATAACTT+GGG | 0.603852 | 2_3:-1332776 | None:intergenic |
| ACTTGGAAGCTAGGACTAGG+AGG | 0.606767 | 2_3:+1332494 | Msa0270030:CDS |
| AGATAGATGACCGAAGCAAG+TGG | 0.607051 | 2_3:+1330542 | None:intergenic |
| GGGTTTGTGGACGAAGCGGA+AGG | 0.609296 | 2_3:+1330563 | Msa0270030:CDS |
| ATGCTGTCAGAGAGCATGCG+TGG | 0.609403 | 2_3:+1331565 | Msa0270030:CDS |
| CTTGATTATGGATTCGAGAG+CGG | 0.616039 | 2_3:-1331712 | None:intergenic |
| CCCTTATTCTTGTCTAACTG+AGG | 0.619051 | 2_3:-1332076 | None:intergenic |
| GCTGAAGAAGAAACATTGGA+AGG | 0.623753 | 2_3:-1332033 | None:intergenic |
| AAGTAAAGGGTAAGTACACA+GGG | 0.626323 | 2_3:-1332158 | None:intergenic |
| ATAATGTTGAGGAAAATGCC+CGG | 0.641939 | 2_3:+1332575 | Msa0270030:CDS |
| AAGACTTGGAAGCTAGGACT+AGG | 0.643546 | 2_3:+1332491 | Msa0270030:CDS |
| AAGTGGGTTTGTGGACGAAG+CGG | 0.650636 | 2_3:+1330559 | Msa0270030:CDS |
| AGGTTCTGCAAATCCCATGT+TGG | 0.653113 | 2_3:-1331897 | None:intergenic |
| CTAAACAATCTGCAACTGGA+CGG | 0.656325 | 2_3:-1332453 | None:intergenic |
| GGACGAAGCGGAAGGTTCGG+AGG | 0.656738 | 2_3:+1330571 | Msa0270030:CDS |
| TCATTTGGAAGATAATGTTG+AGG | 0.658087 | 2_3:+1332564 | Msa0270030:CDS |
| GATAGATGACCGAAGCAAGT+GGG | 0.660856 | 2_3:+1330543 | None:intergenic |
| CAGATGAATCAACAAAGCGT+GGG | 0.669113 | 2_3:+1332617 | Msa0270030:CDS |
| TCGGCAGCAAATCTGGACAG+GGG | 0.670257 | 2_3:-1331608 | None:intergenic |
| ATGGGCCAACCTGGAAGTGA+CGG | 0.673283 | 2_3:-1332742 | None:intergenic |
| AAGAAAAGCCAAGAAAACAA+AGG | 0.675305 | 2_3:-1332386 | None:intergenic |
| ACAAGTGTGAGGAAGAGGCA+AGG | 0.681559 | 2_3:-1331917 | None:intergenic |
| GCTGTGCTTGTAAAATAATG+CGG | 0.697719 | 2_3:-1332115 | None:intergenic |
| GGAGGAGAAATACAAGTGTG+AGG | 0.697754 | 2_3:-1331928 | None:intergenic |
| TGCTGCCGAAGCATTCGGTG+TGG | 0.699184 | 2_3:+1331622 | Msa0270030:CDS |
| ACCTCTGCAAGGGTGCACGG+AGG | 0.720964 | 2_3:-1331946 | None:intergenic |
| ATGCCCGGCTTAGTCCTGGT+AGG | 0.725216 | 2_3:+1332590 | Msa0270030:CDS |
| GGAAGTGACGGTGATCCGGG+TGG | 0.749090 | 2_3:-1332730 | None:intergenic |
| TGGATACCAGAAATCCTCTG+GGG | 0.759997 | 2_3:-1331543 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATTCCAAATAATTATATA+GGG | - | chr2_3:1331046-1331065 | None:intergenic | 15.0% |
| !! | TGAATTCCAAATAATTATAT+AGG | - | chr2_3:1331047-1331066 | None:intergenic | 15.0% |
| !! | TAATTATATAGGGTTAAGAA+GGG | - | chr2_3:1331036-1331055 | None:intergenic | 20.0% |
| !! | ATAATTATATAGGGTTAAGA+AGG | - | chr2_3:1331037-1331056 | None:intergenic | 20.0% |
| !! | CTTAACCCTATATAATTATT+TGG | + | chr2_3:1331038-1331057 | Msa0270030:intron | 20.0% |
| !!! | TTGTTTTTAGATGTTTGAAT+TGG | + | chr2_3:1331349-1331368 | Msa0270030:intron | 20.0% |
| !!! | TGTTTTTAGATGTTTGAATT+GGG | + | chr2_3:1331350-1331369 | Msa0270030:intron | 20.0% |
| !! | CCAATATCAATAACTAATAA+TGG | - | chr2_3:1331509-1331528 | None:intergenic | 20.0% |
| !! | CCATTATTAGTTATTGATAT+TGG | + | chr2_3:1331506-1331525 | Msa0270030:intron | 20.0% |
| !! | AGTTATTGATATTGGAAAAA+AGG | + | chr2_3:1331514-1331533 | Msa0270030:intron | 20.0% |
| !!! | ATTCAACTCAATTATTTTAG+TGG | + | chr2_3:1331740-1331759 | Msa0270030:CDS | 20.0% |
| ! | GTAAATAACACGTTTGATTA+GGG | - | chr2_3:1330916-1330935 | None:intergenic | 25.0% |
| ! | AGTAAATAACACGTTTGATT+AGG | - | chr2_3:1330917-1330936 | None:intergenic | 25.0% |
| !! | TGATGATGATGATTATGAAT+CGG | - | chr2_3:1330967-1330986 | None:intergenic | 25.0% |
| !! | TAATAAAGAGAAAGCATGTA+TGG | - | chr2_3:1331099-1331118 | None:intergenic | 25.0% |
| ! | ACAAATCTCATTGAACAAAA+TGG | - | chr2_3:1331303-1331322 | None:intergenic | 25.0% |
| ! | GTTGAATAAAACCTTGATTA+TGG | - | chr2_3:1331727-1331746 | None:intergenic | 25.0% |
| ! | AATGCAATTCTAATAATCCA+AGG | - | chr2_3:1331767-1331786 | None:intergenic | 25.0% |
| !! | CATTCATCTTATTTGTAATC+TGG | + | chr2_3:1331783-1331802 | Msa0270030:CDS | 25.0% |
| ! | ATGTTATATTGTATCCAACA+TGG | + | chr2_3:1331883-1331902 | Msa0270030:CDS | 25.0% |
| ! | TGTTATATTGTATCCAACAT+GGG | + | chr2_3:1331884-1331903 | Msa0270030:CDS | 25.0% |
| ! | TTGAAATTAGTCATCAACAA+AGG | + | chr2_3:1332250-1332269 | Msa0270030:CDS | 25.0% |
| ! | AATCAATCTTAGAGCATTTC+TGG | + | chr2_3:1331374-1331393 | Msa0270030:CDS | 30.0% |
| CAAACCAAGAAGAATCAAAA+TGG | - | chr2_3:1331666-1331685 | None:intergenic | 30.0% | |
| !!! | TCAATTATTTTAGTGGTCCT+TGG | + | chr2_3:1331747-1331766 | Msa0270030:CDS | 30.0% |
| ! | TCATCTTATTTGTAATCTGG+TGG | + | chr2_3:1331786-1331805 | Msa0270030:CDS | 30.0% |
| ! | CATCTTATTTGTAATCTGGT+GGG | + | chr2_3:1331787-1331806 | Msa0270030:CDS | 30.0% |
| ! | ATCTTATTTGTAATCTGGTG+GGG | + | chr2_3:1331788-1331807 | Msa0270030:CDS | 30.0% |
| !! | TTCCTTCCATTTTAAGTGAA+GGG | - | chr2_3:1331852-1331871 | None:intergenic | 30.0% |
| !! | TTTCCTTCCATTTTAAGTGA+AGG | - | chr2_3:1331853-1331872 | None:intergenic | 30.0% |
| AAAAGCTGAAGAAGAAACAT+TGG | - | chr2_3:1332040-1332059 | None:intergenic | 30.0% | |
| !! | TCTTCAGCTTTTTGTCATTT+TGG | + | chr2_3:1332048-1332067 | Msa0270030:CDS | 30.0% |
| !! | ATTATTTTACAAGCACAGCA+AGG | + | chr2_3:1332119-1332138 | Msa0270030:CDS | 30.0% |
| !! | TTATTTTACAAGCACAGCAA+GGG | + | chr2_3:1332120-1332139 | Msa0270030:CDS | 30.0% |
| TCAACAAAGGTTTACAGAAA+AGG | + | chr2_3:1332263-1332282 | Msa0270030:CDS | 30.0% | |
| CAACAAAGGTTTACAGAAAA+GGG | + | chr2_3:1332264-1332283 | Msa0270030:CDS | 30.0% | |
| ! | TTTTGTGTTTCCTTCCATTA+AGG | + | chr2_3:1332308-1332327 | Msa0270030:CDS | 30.0% |
| TTTGTGTTTCCTTCCATTAA+GGG | + | chr2_3:1332309-1332328 | Msa0270030:CDS | 30.0% | |
| ! | CTTGGTTTATCTGTTTTATC+TGG | + | chr2_3:1332340-1332359 | Msa0270030:CDS | 30.0% |
| AAGAAAAGCCAAGAAAACAA+AGG | - | chr2_3:1332389-1332408 | None:intergenic | 30.0% | |
| TCATTTGGAAGATAATGTTG+AGG | + | chr2_3:1332564-1332583 | Msa0270030:CDS | 30.0% | |
| TGAATGAATGTGTGATGAGT+GGG | - | chr2_3:1330630-1330649 | None:intergenic | 35.0% | |
| ATGAATGAATGTGTGATGAG+TGG | - | chr2_3:1330631-1330650 | None:intergenic | 35.0% | |
| TTGCTCCATTCTCTGAATTA+GGG | + | chr2_3:1330713-1330732 | Msa0270030:intron | 35.0% | |
| GAAAACCCTAATTCAGAGAA+TGG | - | chr2_3:1330721-1330740 | None:intergenic | 35.0% | |
| TAACACGTTTGATTAGGGTA+GGG | - | chr2_3:1330911-1330930 | None:intergenic | 35.0% | |
| ATAACACGTTTGATTAGGGT+AGG | - | chr2_3:1330912-1330931 | None:intergenic | 35.0% | |
| CGGTACTTATAGAATAGAAG+AGG | - | chr2_3:1330947-1330966 | None:intergenic | 35.0% | |
| TGATTCTGATTCTTAGTGGA+TGG | - | chr2_3:1331174-1331193 | None:intergenic | 35.0% | |
| !! | CTACTGATTCTGATTCTTAG+TGG | - | chr2_3:1331178-1331197 | None:intergenic | 35.0% |
| ! | ACGAAGTAAGCATGGATTAT+GGG | - | chr2_3:1331272-1331291 | None:intergenic | 35.0% |
| ATGTAATCATCTACCCTTGA+TGG | + | chr2_3:1331440-1331459 | Msa0270030:intron | 35.0% | |
| !!! | GTAGCCATTTTGATTCTTCT+TGG | + | chr2_3:1331659-1331678 | Msa0270030:CDS | 35.0% |
| CTGGAATTATGAGCAGAAAA+TGG | + | chr2_3:1331975-1331994 | Msa0270030:CDS | 35.0% | |
| !!! | CAGCTTTTTGTCATTTTGGT+TGG | + | chr2_3:1332052-1332071 | Msa0270030:CDS | 35.0% |
| ACCTCAGTTAGACAAGAATA+AGG | + | chr2_3:1332075-1332094 | Msa0270030:CDS | 35.0% | |
| CCTCAGTTAGACAAGAATAA+GGG | + | chr2_3:1332076-1332095 | Msa0270030:CDS | 35.0% | |
| GCTGTGCTTGTAAAATAATG+CGG | - | chr2_3:1332118-1332137 | None:intergenic | 35.0% | |
| ! | TATTTTACAAGCACAGCAAG+GGG | + | chr2_3:1332121-1332140 | Msa0270030:CDS | 35.0% |
| AAGTAAAGGGTAAGTACACA+GGG | - | chr2_3:1332161-1332180 | None:intergenic | 35.0% | |
| TAAGTAAAGGGTAAGTACAC+AGG | - | chr2_3:1332162-1332181 | None:intergenic | 35.0% | |
| GAAGAACGGTACTAAGTAAA+GGG | - | chr2_3:1332174-1332193 | None:intergenic | 35.0% | |
| AGAAGAACGGTACTAAGTAA+AGG | - | chr2_3:1332175-1332194 | None:intergenic | 35.0% | |
| TTACTTAGTACCGTTCTTCT+TGG | + | chr2_3:1332175-1332194 | Msa0270030:CDS | 35.0% | |
| ! | AAGTCAGGATAATGGCAAAA+AGG | - | chr2_3:1332201-1332220 | None:intergenic | 35.0% |
| GAAAAAGAACCCTTAATGGA+AGG | - | chr2_3:1332321-1332340 | None:intergenic | 35.0% | |
| CCAAGAAAAAGAACCCTTAA+TGG | - | chr2_3:1332325-1332344 | None:intergenic | 35.0% | |
| ! | CCATTAAGGGTTCTTTTTCT+TGG | + | chr2_3:1332322-1332341 | Msa0270030:CDS | 35.0% |
| GCTTCAAACATAAAATGCTC+AGG | - | chr2_3:1332367-1332386 | None:intergenic | 35.0% | |
| !!! | GTTTGAAGCCTTTGTTTTCT+TGG | + | chr2_3:1332378-1332397 | Msa0270030:CDS | 35.0% |
| TTGCACTTGTATGTTGTTCT+GGG | + | chr2_3:1332407-1332426 | Msa0270030:CDS | 35.0% | |
| CATTATCTTCCAAATGACTC+TGG | - | chr2_3:1332561-1332580 | None:intergenic | 35.0% | |
| ATAATGTTGAGGAAAATGCC+CGG | + | chr2_3:1332575-1332594 | Msa0270030:CDS | 35.0% | |
| ! | GTCAATTTCTTTTCGGACAA+TGG | + | chr2_3:1332639-1332658 | Msa0270030:CDS | 35.0% |
| ! | TTCTTTTCGGACAATGGAAA+AGG | + | chr2_3:1332645-1332664 | Msa0270030:CDS | 35.0% |
| ! | TCTTTTCGGACAATGGAAAA+GGG | + | chr2_3:1332646-1332665 | Msa0270030:CDS | 35.0% |
| GAGAGAGAAAGAGAAAGAAG+AGG | - | chr2_3:1330684-1330703 | None:intergenic | 40.0% | |
| GTTGCTCCATTCTCTGAATT+AGG | + | chr2_3:1330712-1330731 | Msa0270030:intron | 40.0% | |
| AAGGAAAAGAGAGCTTACAG+TGG | - | chr2_3:1330802-1330821 | None:intergenic | 40.0% | |
| AACACGTTTGATTAGGGTAG+GGG | - | chr2_3:1330910-1330929 | None:intergenic | 40.0% | |
| AGGGTTAAGAAGGGTTTGAT+GGG | - | chr2_3:1331027-1331046 | None:intergenic | 40.0% | |
| TAGGGTTAAGAAGGGTTTGA+TGG | - | chr2_3:1331028-1331047 | None:intergenic | 40.0% | |
| ! | GACGAAGTAAGCATGGATTA+TGG | - | chr2_3:1331273-1331292 | None:intergenic | 40.0% |
| TATCAAGCATCTAGCACTCT+TGG | - | chr2_3:1331411-1331430 | None:intergenic | 40.0% | |
| ! | AATCATCTACCCTTGATGGT+TGG | + | chr2_3:1331444-1331463 | Msa0270030:intron | 40.0% |
| TACGCATAACCAACCATCAA+GGG | - | chr2_3:1331456-1331475 | None:intergenic | 40.0% | |
| ATACGCATAACCAACCATCA+AGG | - | chr2_3:1331457-1331476 | None:intergenic | 40.0% | |
| ATGGATACCAGAAATCCTCT+GGG | - | chr2_3:1331547-1331566 | None:intergenic | 40.0% | |
| CATGCGTGGAATCTGTATTT+CGG | + | chr2_3:1331579-1331598 | Msa0270030:CDS | 40.0% | |
| ATGCGTGGAATCTGTATTTC+GGG | + | chr2_3:1331580-1331599 | Msa0270030:CDS | 40.0% | |
| CTTGATTATGGATTCGAGAG+CGG | - | chr2_3:1331715-1331734 | None:intergenic | 40.0% | |
| GGGGTCTAGGTGAAATTATT+AGG | + | chr2_3:1331807-1331826 | Msa0270030:CDS | 40.0% | |
| TGCCCTTCACTTAAAATGGA+AGG | + | chr2_3:1331847-1331866 | Msa0270030:CDS | 40.0% | |
| GAAATACAAGTGTGAGGAAG+AGG | - | chr2_3:1331925-1331944 | None:intergenic | 40.0% | |
| GCTGAAGAAGAAACATTGGA+AGG | - | chr2_3:1332036-1332055 | None:intergenic | 40.0% | |
| CCCTTATTCTTGTCTAACTG+AGG | - | chr2_3:1332079-1332098 | None:intergenic | 40.0% | |
| ! | ATTTTACAAGCACAGCAAGG+GGG | + | chr2_3:1332122-1332141 | Msa0270030:CDS | 40.0% |
| AAGGTAGGAAGTCAGGATAA+TGG | - | chr2_3:1332209-1332228 | None:intergenic | 40.0% | |
| !!! | TCCTGACTTCCTACCTTTTT+TGG | + | chr2_3:1332212-1332231 | Msa0270030:CDS | 40.0% |
| !!! | ACTTCCTACCTTTTTTGGCT+TGG | + | chr2_3:1332217-1332236 | Msa0270030:CDS | 40.0% |
| ACTACCAAGCCAAAAAAGGT+AGG | - | chr2_3:1332224-1332243 | None:intergenic | 40.0% | |
| !!! | ACCTTTTTTGGCTTGGTAGT+CGG | + | chr2_3:1332224-1332243 | Msa0270030:CDS | 40.0% |
| CTTGCACTTGTATGTTGTTC+TGG | + | chr2_3:1332406-1332425 | Msa0270030:CDS | 40.0% | |
| CTAAACAATCTGCAACTGGA+CGG | - | chr2_3:1332456-1332475 | None:intergenic | 40.0% | |
| AGAGCTAAACAATCTGCAAC+TGG | - | chr2_3:1332460-1332479 | None:intergenic | 40.0% | |
| ! | AGTTGCAGATTGTTTAGCTC+TGG | + | chr2_3:1332459-1332478 | Msa0270030:CDS | 40.0% |
| !! | GTTGCAGATTGTTTAGCTCT+GGG | + | chr2_3:1332460-1332479 | Msa0270030:CDS | 40.0% |
| TCTGGGAAATCTACAAGACT+TGG | + | chr2_3:1332477-1332496 | Msa0270030:CDS | 40.0% | |
| ATCTACAAGACTTGGAAGCT+AGG | + | chr2_3:1332485-1332504 | Msa0270030:CDS | 40.0% | |
| ATGACTCTGGCTAGTGATAA+GGG | - | chr2_3:1332548-1332567 | None:intergenic | 40.0% | |
| AATGACTCTGGCTAGTGATA+AGG | - | chr2_3:1332549-1332568 | None:intergenic | 40.0% | |
| TATCACTAGCCAGAGTCATT+TGG | + | chr2_3:1332549-1332568 | Msa0270030:CDS | 40.0% | |
| GATTCATCTGAATACCTACC+AGG | - | chr2_3:1332607-1332626 | None:intergenic | 40.0% | |
| TCAGATGAATCAACAAAGCG+TGG | + | chr2_3:1332616-1332635 | Msa0270030:CDS | 40.0% | |
| CAGATGAATCAACAAAGCGT+GGG | + | chr2_3:1332617-1332636 | Msa0270030:CDS | 40.0% | |
| ! | AGCGTGGGTCAATTTCTTTT+CGG | + | chr2_3:1332632-1332651 | Msa0270030:CDS | 40.0% |
| ATGGCACAATAACTTGGGTT+GGG | - | chr2_3:1332774-1332793 | None:intergenic | 40.0% | |
| TATGGCACAATAACTTGGGT+TGG | - | chr2_3:1332775-1332794 | None:intergenic | 40.0% | |
| TGTGATGAGTGGGACTTTGT+TGG | - | chr2_3:1330620-1330639 | None:intergenic | 45.0% | |
| CTACACAGACGAAGTAAGCA+TGG | - | chr2_3:1331280-1331299 | None:intergenic | 45.0% | |
| TGGATACCAGAAATCCTCTG+GGG | - | chr2_3:1331546-1331565 | None:intergenic | 45.0% | |
| CATGGATACCAGAAATCCTC+TGG | - | chr2_3:1331548-1331567 | None:intergenic | 45.0% | |
| !! | AGATTTGCTGCCGAAGCATT+CGG | + | chr2_3:1331617-1331636 | Msa0270030:CDS | 45.0% |
| CGCTCTCGAATCCATAATCA+AGG | + | chr2_3:1331713-1331732 | Msa0270030:CDS | 45.0% | |
| TTTGTAATCTGGTGGGGTCT+AGG | + | chr2_3:1331794-1331813 | Msa0270030:CDS | 45.0% | |
| GACGTGCCCTTCACTTAAAA+TGG | + | chr2_3:1331843-1331862 | Msa0270030:CDS | 45.0% | |
| AGGTTCTGCAAATCCCATGT+TGG | - | chr2_3:1331900-1331919 | None:intergenic | 45.0% | |
| GGAGGAGAAATACAAGTGTG+AGG | - | chr2_3:1331931-1331950 | None:intergenic | 45.0% | |
| GGCAAAAAGGCCAAGAAGAA+CGG | - | chr2_3:1332188-1332207 | None:intergenic | 45.0% | |
| GCCAAAAAAGGTAGGAAGTC+AGG | - | chr2_3:1332216-1332235 | None:intergenic | 45.0% | |
| TCCGACTACCAAGCCAAAAA+AGG | - | chr2_3:1332228-1332247 | None:intergenic | 45.0% | |
| AAGACTTGGAAGCTAGGACT+AGG | + | chr2_3:1332491-1332510 | Msa0270030:CDS | 45.0% | |
| AATACCTACCAGGACTAAGC+CGG | - | chr2_3:1332597-1332616 | None:intergenic | 45.0% | |
| !! | GAAAAGGGTGTTGCTTCAAC+TGG | + | chr2_3:1332661-1332680 | Msa0270030:CDS | 45.0% |
| ! | TGGCACAATAACTTGGGTTG+GGG | - | chr2_3:1332773-1332792 | None:intergenic | 45.0% |
| !! | CAATAATTATTAATTAATAA+AGG | - | chr2_3:1330821-1330840 | None:intergenic | 5.0% |
| GTCCACAAACCCACTTGCTT+CGG | - | chr2_3:1330555-1330574 | None:intergenic | 50.0% | |
| ! | AAGTGGGTTTGTGGACGAAG+CGG | + | chr2_3:1330559-1330578 | Msa0270030:CDS | 50.0% |
| ! | AAAAAAGGCACAAGCCCCAG+AGG | + | chr2_3:1331529-1331548 | Msa0270030:intron | 50.0% |
| TTCGGCAGCAAATCTGGACA+GGG | - | chr2_3:1331612-1331631 | None:intergenic | 50.0% | |
| GAATGCTTCGGCAGCAAATC+TGG | - | chr2_3:1331618-1331637 | None:intergenic | 50.0% | |
| TGTCACCACACCGAATGCTT+CGG | - | chr2_3:1331630-1331649 | None:intergenic | 50.0% | |
| ACAAGTGTGAGGAAGAGGCA+AGG | - | chr2_3:1331920-1331939 | None:intergenic | 50.0% | |
| ACTTGGAAGCTAGGACTAGG+AGG | + | chr2_3:1332494-1332513 | Msa0270030:CDS | 50.0% | |
| ATACCTACCAGGACTAAGCC+GGG | - | chr2_3:1332596-1332615 | None:intergenic | 50.0% | |
| !! | ACTTGGGTTGGGGATTGCAT+GGG | - | chr2_3:1332763-1332782 | None:intergenic | 50.0% |
| !! | AACTTGGGTTGGGGATTGCA+TGG | - | chr2_3:1332764-1332783 | None:intergenic | 50.0% |
| ! | GACCGAAGCAAGTGGGTTTG+TGG | + | chr2_3:1330550-1330569 | Msa0270030:CDS | 55.0% |
| TGTGGACGAAGCGGAAGGTT+CGG | + | chr2_3:1330568-1330587 | Msa0270030:CDS | 55.0% | |
| GAAGGTTCGGAGGATACAGC+TGG | + | chr2_3:1330581-1330600 | Msa0270030:CDS | 55.0% | |
| ! | CTGCTGCTGCTGTTGCTTGA+TGG | + | chr2_3:1330763-1330782 | Msa0270030:intron | 55.0% |
| CACAAGCCCCAGAGGATTTC+TGG | + | chr2_3:1331537-1331556 | Msa0270030:CDS | 55.0% | |
| ACGCATGCTCTCTGACAGCA+TGG | - | chr2_3:1331566-1331585 | None:intergenic | 55.0% | |
| ! | ATGCTGTCAGAGAGCATGCG+TGG | + | chr2_3:1331565-1331584 | Msa0270030:CDS | 55.0% |
| TCGGCAGCAAATCTGGACAG+GGG | - | chr2_3:1331611-1331630 | None:intergenic | 55.0% | |
| CTTCGGCAGCAAATCTGGAC+AGG | - | chr2_3:1331613-1331632 | None:intergenic | 55.0% | |
| CCAGTCTCCAACCTCTGCAA+GGG | - | chr2_3:1331959-1331978 | None:intergenic | 55.0% | |
| TCCAGTCTCCAACCTCTGCA+AGG | - | chr2_3:1331960-1331979 | None:intergenic | 55.0% | |
| GAAAATGCCCGGCTTAGTCC+TGG | + | chr2_3:1332586-1332605 | Msa0270030:CDS | 55.0% | |
| CACTACGGCTGGGAGAGAAA+AGG | - | chr2_3:1332705-1332724 | None:intergenic | 55.0% | |
| !! | ATCCGGGTGGTGTTGCACTA+CGG | - | chr2_3:1332720-1332739 | None:intergenic | 55.0% |
| ACCTGGAAGTGACGGTGATC+CGG | - | chr2_3:1332737-1332756 | None:intergenic | 55.0% | |
| GATCACCGTCACTTCCAGGT+TGG | + | chr2_3:1332737-1332756 | Msa0270030:CDS | 55.0% | |
| ATGGGCCAACCTGGAAGTGA+CGG | - | chr2_3:1332745-1332764 | None:intergenic | 55.0% | |
| GGGTTTGTGGACGAAGCGGA+AGG | + | chr2_3:1330563-1330582 | Msa0270030:CDS | 60.0% | |
| CGGAGGATACAGCTGGAGAC+AGG | + | chr2_3:1330588-1330607 | Msa0270030:CDS | 60.0% | |
| CAGCAGTAGCGCGAGGAGAA+AGG | - | chr2_3:1330749-1330768 | None:intergenic | 60.0% | |
| ! | TGCTGCCGAAGCATTCGGTG+TGG | + | chr2_3:1331622-1331641 | Msa0270030:CDS | 60.0% |
| ! | CCAACCTCTGCAAGGGTGCA+CGG | - | chr2_3:1331952-1331971 | None:intergenic | 60.0% |
| CCCTTGCAGAGGTTGGAGAC+TGG | + | chr2_3:1331956-1331975 | Msa0270030:CDS | 60.0% | |
| ATGCCCGGCTTAGTCCTGGT+AGG | + | chr2_3:1332590-1332609 | Msa0270030:CDS | 60.0% | |
| !! | GGTGGTGTTGCACTACGGCT+GGG | - | chr2_3:1332715-1332734 | None:intergenic | 60.0% |
| AGCCGTAGTGCAACACCACC+CGG | + | chr2_3:1332715-1332734 | Msa0270030:CDS | 60.0% | |
| CCTGGAAGTGACGGTGATCC+GGG | - | chr2_3:1332736-1332755 | None:intergenic | 60.0% | |
| GGACGAAGCGGAAGGTTCGG+AGG | + | chr2_3:1330571-1330590 | Msa0270030:CDS | 65.0% | |
| ACAGCAGCAGCAGTAGCGCG+AGG | - | chr2_3:1330756-1330775 | None:intergenic | 65.0% | |
| TCCTCCGTGCACCCTTGCAG+AGG | + | chr2_3:1331945-1331964 | Msa0270030:CDS | 65.0% | |
| ! | ACCTCTGCAAGGGTGCACGG+AGG | - | chr2_3:1331949-1331968 | None:intergenic | 65.0% |
| CCGTGCACCCTTGCAGAGGT+TGG | + | chr2_3:1331949-1331968 | Msa0270030:CDS | 65.0% | |
| !! | GGGTGGTGTTGCACTACGGC+TGG | - | chr2_3:1332716-1332735 | None:intergenic | 65.0% |
| GGAAGTGACGGTGATCCGGG+TGG | - | chr2_3:1332733-1332752 | None:intergenic | 65.0% | |
| CCCGGATCACCGTCACTTCC+AGG | + | chr2_3:1332733-1332752 | Msa0270030:CDS | 65.0% | |
| GGGGATTGCATGGGCCAACC+TGG | - | chr2_3:1332754-1332773 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 1330548 | 1332795 | 1330548 | ID=Msa0270030;Name=Msa0270030 |
| chr2_3 | mRNA | 1330548 | 1332795 | 1330548 | ID=Msa0270030-mRNA-1;Parent=Msa0270030;Name=Msa0270030-mRNA-1;_AED=0.17;_eAED=0.22;_QI=0|0|0|1|0|0.33|3|0|457 |
| chr2_3 | exon | 1330548 | 1330624 | 1330548 | ID=Msa0270030-mRNA-1:exon:565;Parent=Msa0270030-mRNA-1 |
| chr2_3 | exon | 1331359 | 1331395 | 1331359 | ID=Msa0270030-mRNA-1:exon:566;Parent=Msa0270030-mRNA-1 |
| chr2_3 | exon | 1331536 | 1332795 | 1331536 | ID=Msa0270030-mRNA-1:exon:567;Parent=Msa0270030-mRNA-1 |
| chr2_3 | CDS | 1330548 | 1330624 | 1330548 | ID=Msa0270030-mRNA-1:cds;Parent=Msa0270030-mRNA-1 |
| chr2_3 | CDS | 1331359 | 1331395 | 1331359 | ID=Msa0270030-mRNA-1:cds;Parent=Msa0270030-mRNA-1 |
| chr2_3 | CDS | 1331536 | 1332795 | 1331536 | ID=Msa0270030-mRNA-1:cds;Parent=Msa0270030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
