AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0405770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0405770 MtrunA17_Chr3g0096481 90.075 534 48 1 1 534 1 529 0.0 997
Msa0405770 MtrunA17_Chr5g0443341 68.037 535 164 3 1 532 1 531 0.0 734
Msa0405770 MtrunA17_Chr3g0096581 93.145 248 17 0 2 249 1 248 1.63e-172 487
Msa0405770 MtrunA17_Chr3g0096591 80.220 273 52 1 258 530 1 271 5.18e-161 458
Msa0405770 MtrunA17_Chr1g0170421 46.356 494 253 6 49 533 39 529 3.23e-152 448
Msa0405770 MtrunA17_Chr7g0241831 48.156 488 229 8 60 534 19 495 3.53e-152 444
Msa0405770 MtrunA17_Chr4g0005991 46.881 497 239 9 52 534 8 493 6.61e-151 441
Msa0405770 MtrunA17_Chr5g0425071 47.817 481 231 10 64 534 15 485 3.05e-149 437
Msa0405770 MtrunA17_Chr1g0194391 44.673 535 265 11 14 534 16 533 1.67e-143 424
Msa0405770 MtrunA17_Chr8g0348781 42.885 506 261 10 44 531 3 498 1.15e-139 413
Msa0405770 MtrunA17_Chr5g0435581 43.451 481 249 9 65 531 2 473 8.38e-129 385
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0405770 AT1G06520.1 51.701 588 224 12 1 531 1 585 0.0 565
Msa0405770 AT4G01950.1 46.521 503 250 12 41 532 25 519 4.06e-146 430
Msa0405770 AT4G01950.2 46.521 503 250 12 41 532 53 547 8.04e-146 431
Msa0405770 AT2G38110.1 45.842 493 250 8 53 534 12 498 6.96e-144 424
Msa0405770 AT1G02390.1 45.312 512 247 10 44 533 30 530 1.28e-141 419
Msa0405770 AT1G01610.1 43.487 499 264 9 44 531 3 494 4.68e-140 414
Msa0405770 AT4G00400.1 42.771 498 268 8 44 531 3 493 2.37e-133 397
Msa0405770 AT3G11430.1 45.114 481 247 11 61 530 7 481 1.13e-129 387
Msa0405770 AT5G06090.1 44.283 481 247 10 64 531 8 480 2.18e-126 379
Msa0405770 AT3G11325.1 33.333 462 206 9 75 531 6 370 2.70e-72 236
Msa0405770 AT3G11325.2 33.333 462 206 9 75 531 9 373 3.23e-72 236

Find 97 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGCTCTCATTGATTATTT+TGG 0.116145 3_2:-41136508 Msa0405770:CDS
GTTAAACTCATTGTCTTTAT+AGG 0.150817 3_2:+41134600 None:intergenic
ACTTCACTGGTTTGATTTCT+AGG 0.170723 3_2:-41136552 Msa0405770:CDS
CCAGCACAAGTGAGTTCTTT+TGG 0.209499 3_2:+41134303 None:intergenic
CTTCCATCATGAAATATTAA+TGG 0.220853 3_2:+41134948 None:intergenic
GGATATACAAAGCCTGATTT+AGG 0.256768 3_2:-41136487 Msa0405770:CDS
CACTCATAAGCCTTACAAAA+TGG 0.285889 3_2:-41137128 Msa0405770:CDS
ACAAAGCCTGATTTAGGAAT+TGG 0.291687 3_2:-41136481 Msa0405770:CDS
AACTATCACAGACAATTAAT+AGG 0.304521 3_2:-41137184 Msa0405770:five_prime_UTR
TAAGCCTTACAAAATGGTTT+TGG 0.310980 3_2:-41137122 Msa0405770:CDS
TCATGAAATATTAATGGCTT+TGG 0.325007 3_2:+41134954 None:intergenic
AAAAGAGTTGGGTAATGCTT+TGG 0.327807 3_2:-41134244 Msa0405770:CDS
GGACAATAGTTTATTACAAA+TGG 0.339581 3_2:-41134833 Msa0405770:CDS
AAAGAGTTGGGTAATGCTTT+GGG 0.342603 3_2:-41134243 Msa0405770:CDS
TTTATCCCTCCTTGTAATAT+CGG 0.346128 3_2:+41134209 None:intergenic
TAGCATTTCGAATTGTGATT+TGG 0.346495 3_2:-41136989 Msa0405770:CDS
TCAATTTATAGATTATTTCT+TGG 0.350275 3_2:-41134855 Msa0405770:CDS
CATGGAGAATCTTAACCTTA+AGG 0.353285 3_2:-41136710 Msa0405770:CDS
ATTGATAATGGAATTGCAAT+TGG 0.355353 3_2:+41134873 None:intergenic
AATAATCTATAAATTGATAA+TGG 0.356165 3_2:+41134861 None:intergenic
TCCCTACAAGTTGTTCCTTC+AGG 0.358949 3_2:+41134510 None:intergenic
GCAAGGATATTGATAAATAA+TGG 0.360558 3_2:-41137066 Msa0405770:CDS
CAATTTATAGATTATTTCTT+GGG 0.369337 3_2:-41134854 Msa0405770:CDS
TCTTAACCTTAAGGCTTATG+AGG 0.373376 3_2:-41136701 Msa0405770:CDS
AAGGCAACAAGCATGAAATA+AGG 0.375905 3_2:+41136898 None:intergenic
GTGCTTCCAATTCCTAAATC+AGG 0.378611 3_2:+41136475 None:intergenic
CACTTGTGTGCCTAAAGTTA+TGG 0.385069 3_2:-41136647 Msa0405770:CDS
GACAATAGTTTATTACAAAT+GGG 0.398640 3_2:-41134832 Msa0405770:CDS
TATGGTGGAAGGGTTTCTTA+AGG 0.406410 3_2:-41136629 Msa0405770:CDS
TAGGCATGGTTTGGTTGATA+AGG 0.411704 3_2:-41136533 Msa0405770:CDS
CAACTGCTAATGGATTAAAA+TGG 0.424230 3_2:-41134392 Msa0405770:CDS
AGATTCTCCATGTAAAACTT+TGG 0.427361 3_2:+41136721 None:intergenic
GATAAATATATGATGTTAGC+GGG 0.428636 3_2:-41134192 Msa0405770:CDS
TAATATTGAAGTACTTGAAA+AGG 0.432261 3_2:-41134328 Msa0405770:CDS
TCCCTTGGCATAATTGAACT+TGG 0.439028 3_2:+41134984 None:intergenic
TTTGATTTCTAGGCATGGTT+TGG 0.440519 3_2:-41136542 Msa0405770:CDS
ACTATCACAGACAATTAATA+GGG 0.448545 3_2:-41137183 Msa0405770:five_prime_UTR
TTTCTTAAGGAATATTTGAA+TGG 0.451191 3_2:-41136616 Msa0405770:CDS
AGAAATAATGAGTCTTTAAG+AGG 0.461316 3_2:+41136923 None:intergenic
TGCTAATGGATTAAAATGGT+TGG 0.478561 3_2:-41134388 Msa0405770:CDS
TTTGAGAAAACCTTTGACTA+CGG 0.479760 3_2:-41134661 Msa0405770:CDS
TTCATGCTTGTTGCCTTCGA+AGG 0.481936 3_2:-41136892 Msa0405770:CDS
AACCCTTCCACCATAACTTT+AGG 0.482102 3_2:+41136637 None:intergenic
ACAAAACCTCATAAGCCTTA+AGG 0.483043 3_2:+41136695 None:intergenic
ACTGTTGGATGCTACTTCAC+TGG 0.486698 3_2:-41136565 Msa0405770:CDS
ACTGGTTTGATTTCTAGGCA+TGG 0.499174 3_2:-41136547 Msa0405770:CDS
CCAAAAGAACTCACTTGTGC+TGG 0.501281 3_2:-41134303 Msa0405770:CDS
GTCCTGAAGGAACAACTTGT+AGG 0.502469 3_2:-41134512 Msa0405770:CDS
ATGATGTTAGCGGGGAATGA+AGG 0.507843 3_2:-41134183 Msa0405770:CDS
GAACTAAATCTCAATAGATA+AGG 0.509333 3_2:+41134486 None:intergenic
TATAGAGTTGAAGAAGGTGT+AGG 0.516947 3_2:+41134912 None:intergenic
GAAATGCTAGGGATATTTGA+AGG 0.521655 3_2:+41137003 None:intergenic
AAAGAACTCACTTGTGCTGG+TGG 0.522091 3_2:-41134300 Msa0405770:CDS
AAATCACAATTCGAAATGCT+AGG 0.525785 3_2:+41136991 None:intergenic
AAAATGAATGAAAGAAAATG+AGG 0.533046 3_2:-41134096 Msa0405770:three_prime_UTR
ATAGAGTTGAAGAAGGTGTA+GGG 0.537173 3_2:+41134913 None:intergenic
AGTACTTCAATATTATAACT+AGG 0.538955 3_2:+41134336 None:intergenic
ATATTTGAAGGTTGTTGAAG+TGG 0.540654 3_2:+41137015 None:intergenic
AAGCCATTAATATTTCATGA+TGG 0.544073 3_2:-41134951 Msa0405770:CDS
TCAATATTATAACTAGGCCA+TGG 0.546573 3_2:+41134342 None:intergenic
CTTGCATTAGTAGCATATAG+TGG 0.547683 3_2:-41134807 Msa0405770:CDS
TCCAAGTTCAATTATGCCAA+GGG 0.549008 3_2:-41134985 Msa0405770:CDS
TCCTGAAGGAACAACTTGTA+GGG 0.557385 3_2:-41134511 Msa0405770:CDS
GCTACAGAGTTACACACTGT+TGG 0.560729 3_2:-41136580 Msa0405770:CDS
GTCCAAGTTCAATTATGCCA+AGG 0.561023 3_2:-41134986 Msa0405770:CDS
CTATAAGTTACCGTAGTCAA+AGG 0.562718 3_2:+41134651 None:intergenic
AATCACAATTCGAAATGCTA+GGG 0.567925 3_2:+41136992 None:intergenic
TTGAGTGTACCGATATTACA+AGG 0.571739 3_2:-41134218 Msa0405770:CDS
GTGCCTAAAGTTATGGTGGA+AGG 0.572751 3_2:-41136640 Msa0405770:CDS
GGATAAATATATGATGTTAG+CGG 0.577915 3_2:-41134193 Msa0405770:CDS
GGTATAACTATAAATATCAA+AGG 0.580246 3_2:-41134786 Msa0405770:CDS
TGCTGATGAGATTGTTCCTG+TGG 0.580570 3_2:-41134448 Msa0405770:CDS
ATGCAAAGGTTGTTAAGTGA+AGG 0.581573 3_2:-41134549 Msa0405770:CDS
ATGCTTGTTGCCTTCGAAGG+TGG 0.582726 3_2:-41136889 Msa0405770:CDS
ACATTAACATTCATAGCCAC+AGG 0.584016 3_2:+41134432 None:intergenic
CAACTCTATACATGTTCATG+TGG 0.591449 3_2:-41134899 Msa0405770:CDS
GATTTAGTTGTGTGTCCTGA+AGG 0.591518 3_2:-41134525 Msa0405770:CDS
ATTTCGAATTGTGATTTGGA+AGG 0.597964 3_2:-41136985 Msa0405770:CDS
AACATGTATAGAGTTGAAGA+AGG 0.599365 3_2:+41134906 None:intergenic
AAACTTGTTATCAAACTGCA+AGG 0.600244 3_2:-41137083 Msa0405770:CDS
AGGACATGGAAATGACTGCA+AGG 0.600593 3_2:-41136753 Msa0405770:CDS
TGGACTGAAAATAAAGGACA+TGG 0.602277 3_2:-41136767 Msa0405770:CDS
TGCCTAAAGTTATGGTGGAA+GGG 0.603544 3_2:-41136639 Msa0405770:CDS
AAATGAATGAAAGAAAATGA+GGG 0.605896 3_2:-41134095 Msa0405770:three_prime_UTR
GGACATGGAAATGACTGCAA+GGG 0.612908 3_2:-41136752 Msa0405770:CDS
ACAATAGTTTATTACAAATG+GGG 0.618107 3_2:-41134831 Msa0405770:CDS
TAAAATGCTACCACCTTCGA+AGG 0.629864 3_2:+41136879 None:intergenic
AAGATAGAGAAACAATGCAA+AGG 0.634514 3_2:-41134563 Msa0405770:CDS
GTGTACCGATATTACAAGGA+GGG 0.640930 3_2:-41134214 Msa0405770:CDS
TAAAGACAATGAGTTTAACA+AGG 0.642663 3_2:-41134596 Msa0405770:CDS
TGAATGAAAGAAAATGAGGG+TGG 0.643941 3_2:-41134092 Msa0405770:three_prime_UTR
TTGTGTGCCTAAAGTTATGG+TGG 0.649697 3_2:-41136644 Msa0405770:CDS
TGAATGATAGGAAGCTTATG+TGG 0.652223 3_2:-41135024 Msa0405770:intron
ATAAATATATGATGTTAGCG+GGG 0.652719 3_2:-41134191 Msa0405770:CDS
TACTCTATGTTTGTACACAT+AGG 0.654259 3_2:-41134716 Msa0405770:CDS
AAAGACAATGAGTTTAACAA+GGG 0.667075 3_2:-41134595 Msa0405770:CDS
AGTGTACCGATATTACAAGG+AGG 0.723370 3_2:-41134215 Msa0405770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACTTATTGTTAATTA+GGG + chr3_2:41135121-41135140 None:intergenic 10.0%
!! AAAAAAACTTATTGTTAATT+AGG + chr3_2:41135122-41135141 None:intergenic 10.0%
!!! AATTAACAATAAGTTTTTTT+TGG - chr3_2:41135122-41135141 Msa0405770:intron 10.0%
!!! GTTAACAATAAATTTTTTAA+AGG - chr3_2:41135152-41135171 Msa0405770:intron 10.0%
!! GAATAAAATAAAATAAAATG+TGG - chr3_2:41136148-41136167 Msa0405770:intron 10.0%
!! AATAATCTATAAATTGATAA+TGG + chr3_2:41136435-41136454 None:intergenic 10.0%
!!! TTGTTATTGAATTTTTTTTA+GGG + chr3_2:41136548-41136567 None:intergenic 10.0%
!!! TTTGTTATTGAATTTTTTTT+AGG + chr3_2:41136549-41136568 None:intergenic 10.0%
!! AAAAATTCAATAACAAATAA+AGG - chr3_2:41136552-41136571 Msa0405770:CDS 10.0%
!!! ATAAGTTTTTTTTGGTAAAA+TGG - chr3_2:41135130-41135149 Msa0405770:intron 15.0%
!!! AGTAGTTTTTTTTTTTTTGA+AGG - chr3_2:41135702-41135721 Msa0405770:intron 15.0%
!!! ATTTTACTATGTTATTATAG+TGG - chr3_2:41136042-41136061 Msa0405770:intron 15.0%
!!! AAATTGAATACTTTTTTGTT+TGG - chr3_2:41136126-41136145 Msa0405770:intron 15.0%
!!! TCAATTTATAGATTATTTCT+TGG - chr3_2:41136438-41136457 Msa0405770:CDS 15.0%
!!! CAATTTATAGATTATTTCTT+GGG - chr3_2:41136439-41136458 Msa0405770:CDS 15.0%
!! AAAAAAAGAAGTGAAAATTA+TGG - chr3_2:41137141-41137160 Msa0405770:CDS 15.0%
!!! TTTTCTTTCATTCATTTTAT+GGG + chr3_2:41137195-41137214 None:intergenic 15.0%
!!! ATTTTCTTTCATTCATTTTA+TGG + chr3_2:41137196-41137215 None:intergenic 15.0%
!! TTTCTTAAGGAATATTTGAA+TGG - chr3_2:41134677-41134696 Msa0405770:CDS 20.0%
!!! TCATTTTATCTCTTATTGTA+AGG - chr3_2:41134856-41134875 Msa0405770:CDS 20.0%
!! ACATGTTAAGAATCTAAAAA+TGG - chr3_2:41134965-41134984 Msa0405770:CDS 20.0%
!!! CAAAGATAGAAATATTTTGT+TGG + chr3_2:41135059-41135078 None:intergenic 20.0%
!!! CAACAAAATATTTCTATCTT+TGG - chr3_2:41135057-41135076 Msa0405770:intron 20.0%
!! TAGTAAGTTCTTAAAATGAA+AGG - chr3_2:41135175-41135194 Msa0405770:intron 20.0%
!!! ATATACATATGAACATTTTC+TGG + chr3_2:41135266-41135285 None:intergenic 20.0%
!! AAATAAGTTATAATTACAGG+TGG + chr3_2:41135383-41135402 None:intergenic 20.0%
!! GTGAAATAAGTTATAATTAC+AGG + chr3_2:41135386-41135405 None:intergenic 20.0%
!! ACTAAATTAAAATTCAAGTG+AGG + chr3_2:41135530-41135549 None:intergenic 20.0%
!!! GTAAAACTGTTTTACATTAA+TGG + chr3_2:41135586-41135605 None:intergenic 20.0%
!! TAATTACCTTTACAAAAATG+AGG + chr3_2:41135647-41135666 None:intergenic 20.0%
!!! GAGTAGTTTTTTTTTTTTGA+AGG - chr3_2:41135736-41135755 Msa0405770:intron 20.0%
!!! ACTGCATTTTAAAATAGATA+AGG + chr3_2:41135912-41135931 None:intergenic 20.0%
!! TTTGTCAAAATATGTAAATG+TGG - chr3_2:41136003-41136022 Msa0405770:intron 20.0%
!! TTGTCAAAATATGTAAATGT+GGG - chr3_2:41136004-41136023 Msa0405770:intron 20.0%
!!! AGTATTCAATTTCTTTCTTT+TGG + chr3_2:41136118-41136137 None:intergenic 20.0%
!!! TGTACGTTTTCATTTATTTT+TGG - chr3_2:41136185-41136204 Msa0405770:intron 20.0%
!!! TTTTGGCATATGATTATAAT+TGG - chr3_2:41136202-41136221 Msa0405770:intron 20.0%
!! ATAATGTAGTTAGTTAGATA+AGG + chr3_2:41136244-41136263 None:intergenic 20.0%
!! ACATTATTACAATGAATGAT+AGG - chr3_2:41136257-41136276 Msa0405770:intron 20.0%
!! GACAATAGTTTATTACAAAT+GGG - chr3_2:41136461-41136480 Msa0405770:CDS 20.0%
!! ACAATAGTTTATTACAAATG+GGG - chr3_2:41136462-41136481 Msa0405770:CDS 20.0%
!! GGTATAACTATAAATATCAA+AGG - chr3_2:41136507-41136526 Msa0405770:CDS 20.0%
!! AGTACTTCAATATTATAACT+AGG + chr3_2:41136960-41136979 None:intergenic 20.0%
!!! TAATATTGAAGTACTTGAAA+AGG - chr3_2:41136965-41136984 Msa0405770:CDS 20.0%
!! TAACTATATACAAAAAGAGT+TGG - chr3_2:41137037-41137056 Msa0405770:CDS 20.0%
!! AACTATATACAAAAAGAGTT+GGG - chr3_2:41137038-41137057 Msa0405770:CDS 20.0%
!! AAAATGAATGAAAGAAAATG+AGG - chr3_2:41137197-41137216 Msa0405770:five_prime_UTR 20.0%
!! AAATGAATGAAAGAAAATGA+GGG - chr3_2:41137198-41137217 Msa0405770:five_prime_UTR 20.0%
! AACTATCACAGACAATTAAT+AGG - chr3_2:41134109-41134128 Msa0405770:three_prime_UTR 25.0%
! ACTATCACAGACAATTAATA+GGG - chr3_2:41134110-41134129 Msa0405770:three_prime_UTR 25.0%
! GCAAGGATATTGATAAATAA+TGG - chr3_2:41134227-41134246 Msa0405770:CDS 25.0%
! AGAAATAATGAGTCTTTAAG+AGG + chr3_2:41134373-41134392 None:intergenic 25.0%
!! TAGCTCAAAAAGCATAATAT+AGG + chr3_2:41134467-41134486 None:intergenic 25.0%
!!! TTTTTGTGGACTGAAAATAA+AGG - chr3_2:41134520-41134539 Msa0405770:CDS 25.0%
!! AGTTTTACCAAAGTTTTACA+TGG - chr3_2:41134565-41134584 Msa0405770:CDS 25.0%
! TTAGCTATATATCATGTTCT+TGG - chr3_2:41134902-41134921 Msa0405770:CDS 25.0%
! TGTTCTTGGTATTAATTAAC+TGG - chr3_2:41134916-41134935 Msa0405770:CDS 25.0%
! GTTCTTGGTATTAATTAACT+GGG - chr3_2:41134917-41134936 Msa0405770:CDS 25.0%
! AGTTCTTAAAATGAAAGGAA+TGG - chr3_2:41135180-41135199 Msa0405770:intron 25.0%
! GCTCAAATCAAATGTTTATA+CGG + chr3_2:41135244-41135263 None:intergenic 25.0%
! TTATAATTACAGGTGGTTAA+GGG + chr3_2:41135376-41135395 None:intergenic 25.0%
! AAATTAAAATTCAAGTGAGG+CGG + chr3_2:41135527-41135546 None:intergenic 25.0%
!!! ACATAACCTCATTTTTGTAA+AGG - chr3_2:41135638-41135657 Msa0405770:intron 25.0%
! ATTATACACTTCTTGAATAC+CGG - chr3_2:41135862-41135881 Msa0405770:intron 25.0%
! TGTCAAAATATGTAAATGTG+GGG - chr3_2:41136005-41136024 Msa0405770:intron 25.0%
! TCATGAAATATTAATGGCTT+TGG + chr3_2:41136342-41136361 None:intergenic 25.0%
! AAGCCATTAATATTTCATGA+TGG - chr3_2:41136342-41136361 Msa0405770:intron 25.0%
! CTTCCATCATGAAATATTAA+TGG + chr3_2:41136348-41136367 None:intergenic 25.0%
!!! ATTGATAATGGAATTGCAAT+TGG + chr3_2:41136423-41136442 None:intergenic 25.0%
! GGACAATAGTTTATTACAAA+TGG - chr3_2:41136460-41136479 Msa0405770:CDS 25.0%
! GTTAAACTCATTGTCTTTAT+AGG + chr3_2:41136696-41136715 None:intergenic 25.0%
! TAAAGACAATGAGTTTAACA+AGG - chr3_2:41136697-41136716 Msa0405770:CDS 25.0%
! AAAGACAATGAGTTTAACAA+GGG - chr3_2:41136698-41136717 Msa0405770:CDS 25.0%
! GAACTAAATCTCAATAGATA+AGG + chr3_2:41136810-41136829 None:intergenic 25.0%
!! GTTAATGTGAGTATGTTTTA+TGG - chr3_2:41136876-41136895 Msa0405770:CDS 25.0%
!!! TTCTATTTTTGATGAATCCA+TGG - chr3_2:41136934-41136953 Msa0405770:CDS 25.0%
! GGATAAATATATGATGTTAG+CGG - chr3_2:41137100-41137119 Msa0405770:CDS 25.0%
! GATAAATATATGATGTTAGC+GGG - chr3_2:41137101-41137120 Msa0405770:CDS 25.0%
! ATAAATATATGATGTTAGCG+GGG - chr3_2:41137102-41137121 Msa0405770:CDS 25.0%
GGGAGAAAAACTGAAAAAAA+TGG - chr3_2:41134130-41134149 Msa0405770:three_prime_UTR 30.0%
! TAAGCCTTACAAAATGGTTT+TGG - chr3_2:41134171-41134190 Msa0405770:CDS 30.0%
!! AACAAGTTTTGACAATCACA+TGG + chr3_2:41134199-41134218 None:intergenic 30.0%
!! AAACTTGTTATCAAACTGCA+AGG - chr3_2:41134210-41134229 Msa0405770:CDS 30.0%
ATATTTGAAGGTTGTTGAAG+TGG + chr3_2:41134281-41134300 None:intergenic 30.0%
AATCACAATTCGAAATGCTA+GGG + chr3_2:41134304-41134323 None:intergenic 30.0%
AAATCACAATTCGAAATGCT+AGG + chr3_2:41134305-41134324 None:intergenic 30.0%
TAGCATTTCGAATTGTGATT+TGG - chr3_2:41134304-41134323 Msa0405770:CDS 30.0%
! ATTTCGAATTGTGATTTGGA+AGG - chr3_2:41134308-41134327 Msa0405770:CDS 30.0%
!!! ATGATCTTCATCACTTTTTG+TGG - chr3_2:41134506-41134525 Msa0405770:CDS 30.0%
AGATTCTCCATGTAAAACTT+TGG + chr3_2:41134575-41134594 None:intergenic 30.0%
!! AGTGCTCTCATTGATTATTT+TGG - chr3_2:41134785-41134804 Msa0405770:CDS 30.0%
GTTATAATTACAGGTGGTTA+AGG + chr3_2:41135377-41135396 None:intergenic 30.0%
!! AAAGTATTGTGATCTCTCAT+TGG - chr3_2:41135765-41135784 Msa0405770:intron 30.0%
!!! TTTTTGAAGTGATCTCTCAT+TGG - chr3_2:41135803-41135822 Msa0405770:intron 30.0%
CAACGTCAAAATTACATTGA+CGG - chr3_2:41135830-41135849 Msa0405770:intron 30.0%
TCAAAGATTTCAAGAACAAC+CGG + chr3_2:41135884-41135903 None:intergenic 30.0%
AAAAGTGATTCAAGCGAAAT+GGG - chr3_2:41135977-41135996 Msa0405770:intron 30.0%
GTCAAAATATGTAAATGTGG+GGG - chr3_2:41136006-41136025 Msa0405770:intron 30.0%
TCAAAATATGTAAATGTGGG+GGG - chr3_2:41136007-41136026 Msa0405770:intron 30.0%
AAATGAAAACGTACAGCTTT+GGG + chr3_2:41136180-41136199 None:intergenic 30.0%
TAAATGAAAACGTACAGCTT+TGG + chr3_2:41136181-41136200 None:intergenic 30.0%
AACATGTATAGAGTTGAAGA+AGG + chr3_2:41136390-41136409 None:intergenic 30.0%
TACTCTATGTTTGTACACAT+AGG - chr3_2:41136577-41136596 Msa0405770:CDS 30.0%
AAACTCATGCTAAGAAAAAC+AGG + chr3_2:41136615-41136634 None:intergenic 30.0%
TTTGAGAAAACCTTTGACTA+CGG - chr3_2:41136632-41136651 Msa0405770:CDS 30.0%
AAGATAGAGAAACAATGCAA+AGG - chr3_2:41136730-41136749 Msa0405770:CDS 30.0%
! TTTTATGGTACAACTGCTAA+TGG - chr3_2:41136891-41136910 Msa0405770:CDS 30.0%
!! CAACTGCTAATGGATTAAAA+TGG - chr3_2:41136901-41136920 Msa0405770:CDS 30.0%
!! TGCTAATGGATTAAAATGGT+TGG - chr3_2:41136905-41136924 Msa0405770:CDS 30.0%
TCAATATTATAACTAGGCCA+TGG + chr3_2:41136954-41136973 None:intergenic 30.0%
TTTATCCCTCCTTGTAATAT+CGG + chr3_2:41137087-41137106 None:intergenic 30.0%
CACTCATAAGCCTTACAAAA+TGG - chr3_2:41134165-41134184 Msa0405770:CDS 35.0%
! GGTACCAAAACCATTTTGTA+AGG + chr3_2:41134178-41134197 None:intergenic 35.0%
GAAATGCTAGGGATATTTGA+AGG + chr3_2:41134293-41134312 None:intergenic 35.0%
AAGGCAACAAGCATGAAATA+AGG + chr3_2:41134398-41134417 None:intergenic 35.0%
TGGACTGAAAATAAAGGACA+TGG - chr3_2:41134526-41134545 Msa0405770:CDS 35.0%
CATGGAGAATCTTAACCTTA+AGG - chr3_2:41134583-41134602 Msa0405770:CDS 35.0%
TCTTAACCTTAAGGCTTATG+AGG - chr3_2:41134592-41134611 Msa0405770:CDS 35.0%
ACAAAACCTCATAAGCCTTA+AGG + chr3_2:41134601-41134620 None:intergenic 35.0%
!! TATGAGGTTTTGTCTTCAGT+AGG - chr3_2:41134608-41134627 Msa0405770:CDS 35.0%
!! ACTTCACTGGTTTGATTTCT+AGG - chr3_2:41134741-41134760 Msa0405770:CDS 35.0%
! TTTGATTTCTAGGCATGGTT+TGG - chr3_2:41134751-41134770 Msa0405770:CDS 35.0%
GGATATACAAAGCCTGATTT+AGG - chr3_2:41134806-41134825 Msa0405770:CDS 35.0%
ACAAAGCCTGATTTAGGAAT+TGG - chr3_2:41134812-41134831 Msa0405770:CDS 35.0%
GAGGTTATGTGACAAAATAG+AGG + chr3_2:41135628-41135647 None:intergenic 35.0%
GAAAAGTGATTCAAGCGAAA+TGG - chr3_2:41135976-41135995 Msa0405770:intron 35.0%
TCATCTAGGTATGATACTTG+TGG + chr3_2:41136089-41136108 None:intergenic 35.0%
!!! TCTTTTGGCTTGTATCATCT+AGG + chr3_2:41136103-41136122 None:intergenic 35.0%
TGAATGATAGGAAGCTTATG+TGG - chr3_2:41136269-41136288 Msa0405770:intron 35.0%
TCCAAGTTCAATTATGCCAA+GGG - chr3_2:41136308-41136327 Msa0405770:intron 35.0%
! ATAGAGTTGAAGAAGGTGTA+GGG + chr3_2:41136383-41136402 None:intergenic 35.0%
! TATAGAGTTGAAGAAGGTGT+AGG + chr3_2:41136384-41136403 None:intergenic 35.0%
CAACTCTATACATGTTCATG+TGG - chr3_2:41136394-41136413 Msa0405770:intron 35.0%
CTTGCATTAGTAGCATATAG+TGG - chr3_2:41136486-41136505 Msa0405770:CDS 35.0%
CTATAAGTTACCGTAGTCAA+AGG + chr3_2:41136645-41136664 None:intergenic 35.0%
ATGCAAAGGTTGTTAAGTGA+AGG - chr3_2:41136744-41136763 Msa0405770:CDS 35.0%
ACATTAACATTCATAGCCAC+AGG + chr3_2:41136864-41136883 None:intergenic 35.0%
!! TGGAAAGTCTTCTTTTGAAG+TGG - chr3_2:41137013-41137032 Msa0405770:CDS 35.0%
AAAAGAGTTGGGTAATGCTT+TGG - chr3_2:41137049-41137068 Msa0405770:CDS 35.0%
AAAGAGTTGGGTAATGCTTT+GGG - chr3_2:41137050-41137069 Msa0405770:CDS 35.0%
! TTGAGTGTACCGATATTACA+AGG - chr3_2:41137075-41137094 Msa0405770:CDS 35.0%
TGAATGAAAGAAAATGAGGG+TGG - chr3_2:41137201-41137220 Msa0405770:five_prime_UTR 35.0%
TAAAATGCTACCACCTTCGA+AGG + chr3_2:41134417-41134436 None:intergenic 40.0%
CACTTGTGTGCCTAAAGTTA+TGG - chr3_2:41134646-41134665 Msa0405770:CDS 40.0%
TTGTGTGCCTAAAGTTATGG+TGG - chr3_2:41134649-41134668 Msa0405770:CDS 40.0%
! TGCCTAAAGTTATGGTGGAA+GGG - chr3_2:41134654-41134673 Msa0405770:CDS 40.0%
AACCCTTCCACCATAACTTT+AGG + chr3_2:41134659-41134678 None:intergenic 40.0%
! TATGGTGGAAGGGTTTCTTA+AGG - chr3_2:41134664-41134683 Msa0405770:CDS 40.0%
!! ACTGGTTTGATTTCTAGGCA+TGG - chr3_2:41134746-41134765 Msa0405770:CDS 40.0%
!! TAGGCATGGTTTGGTTGATA+AGG - chr3_2:41134760-41134779 Msa0405770:CDS 40.0%
GTGCTTCCAATTCCTAAATC+AGG + chr3_2:41134821-41134840 None:intergenic 40.0%
ATTCTTAACATGTGCCCTGA+GGG + chr3_2:41134958-41134977 None:intergenic 40.0%
!! CTTCTTAACTTGTGCCTTGA+GGG - chr3_2:41135080-41135099 Msa0405770:intron 40.0%
AATGTTATCTTGTGCCCTCA+AGG + chr3_2:41135097-41135116 None:intergenic 40.0%
GGTAAAATGGGAAATCCGTT+GGG + chr3_2:41135355-41135374 None:intergenic 40.0%
CAGGTGGTTAAGGGTAAAAT+GGG + chr3_2:41135367-41135386 None:intergenic 40.0%
ACAGGTGGTTAAGGGTAAAA+TGG + chr3_2:41135368-41135387 None:intergenic 40.0%
! TTCACTTGTGTTGACAAGCT+TGG - chr3_2:41135425-41135444 Msa0405770:intron 40.0%
GTCCAAGTTCAATTATGCCA+AGG - chr3_2:41136307-41136326 Msa0405770:intron 40.0%
TCCCTTGGCATAATTGAACT+TGG + chr3_2:41136312-41136331 None:intergenic 40.0%
GATTTAGTTGTGTGTCCTGA+AGG - chr3_2:41136768-41136787 Msa0405770:CDS 40.0%
TCCTGAAGGAACAACTTGTA+GGG - chr3_2:41136782-41136801 Msa0405770:CDS 40.0%
! AGTGTACCGATATTACAAGG+AGG - chr3_2:41137078-41137097 Msa0405770:CDS 40.0%
! GTGTACCGATATTACAAGGA+GGG - chr3_2:41137079-41137098 Msa0405770:CDS 40.0%
! TTCATGCTTGTTGCCTTCGA+AGG - chr3_2:41134401-41134420 Msa0405770:CDS 45.0%
AGGACATGGAAATGACTGCA+AGG - chr3_2:41134540-41134559 Msa0405770:CDS 45.0%
GGACATGGAAATGACTGCAA+GGG - chr3_2:41134541-41134560 Msa0405770:CDS 45.0%
! GTGCCTAAAGTTATGGTGGA+AGG - chr3_2:41134653-41134672 Msa0405770:CDS 45.0%
GCTACAGAGTTACACACTGT+TGG - chr3_2:41134713-41134732 Msa0405770:CDS 45.0%
! ACTGTTGGATGCTACTTCAC+TGG - chr3_2:41134728-41134747 Msa0405770:CDS 45.0%
!! TAGTGTTAACTTGTGCCCTC+AGG - chr3_2:41134940-41134959 Msa0405770:CDS 45.0%
!! AGTGTTAACTTGTGCCCTCA+GGG - chr3_2:41134941-41134960 Msa0405770:CDS 45.0%
GATTCTTAACATGTGCCCTG+AGG + chr3_2:41134959-41134978 None:intergenic 45.0%
!! GCTTCTTAACTTGTGCCTTG+AGG - chr3_2:41135079-41135098 Msa0405770:intron 45.0%
GGTAAGAGGATCAGATGTAG+GGG + chr3_2:41135324-41135343 None:intergenic 45.0%
GGGTAAGAGGATCAGATGTA+GGG + chr3_2:41135325-41135344 None:intergenic 45.0%
AGGGTAAGAGGATCAGATGT+AGG + chr3_2:41135326-41135345 None:intergenic 45.0%
GGGTAAAATGGGAAATCCGT+TGG + chr3_2:41135356-41135375 None:intergenic 45.0%
! ACTTGTGTTGACAAGCTTGG+TGG - chr3_2:41135428-41135447 Msa0405770:intron 45.0%
!!! GGCTTTGGATACTTTTCCCT+TGG + chr3_2:41136327-41136346 None:intergenic 45.0%
GTCCTGAAGGAACAACTTGT+AGG - chr3_2:41136781-41136800 Msa0405770:CDS 45.0%
TCCCTACAAGTTGTTCCTTC+AGG + chr3_2:41136786-41136805 None:intergenic 45.0%
TGCTGATGAGATTGTTCCTG+TGG - chr3_2:41136845-41136864 Msa0405770:CDS 45.0%
! CCAGCACAAGTGAGTTCTTT+TGG + chr3_2:41136993-41137012 None:intergenic 45.0%
CCAAAAGAACTCACTTGTGC+TGG - chr3_2:41136990-41137009 Msa0405770:CDS 45.0%
AAAGAACTCACTTGTGCTGG+TGG - chr3_2:41136993-41137012 Msa0405770:CDS 45.0%
ATGATGTTAGCGGGGAATGA+AGG - chr3_2:41137110-41137129 Msa0405770:CDS 45.0%
! ATGCTTGTTGCCTTCGAAGG+TGG - chr3_2:41134404-41134423 Msa0405770:CDS 50.0%
TCTTACCCTCACAAGCCCAA+CGG - chr3_2:41135337-41135356 Msa0405770:intron 50.0%
GAAATCCGTTGGGCTTGTGA+GGG + chr3_2:41135345-41135364 None:intergenic 50.0%
TTCAAGTGAGGCGGTACACA+AGG + chr3_2:41135518-41135537 None:intergenic 50.0%
GTTGGGCTTGTGAGGGTAAG+AGG + chr3_2:41135338-41135357 None:intergenic 55.0%
GGAAATCCGTTGGGCTTGTG+AGG + chr3_2:41135346-41135365 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 41134091 41137224 41134091 ID=Msa0405770;Name=Msa0405770
chr3_2 mRNA 41134091 41137224 41134091 ID=Msa0405770-mRNA-1;Parent=Msa0405770;Name=Msa0405770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=58|1|1|1|1|1|2|70|534
chr3_2 exon 41134091 41135036 41134091 ID=Msa0405770-mRNA-1:exon:7999;Parent=Msa0405770-mRNA-1
chr3_2 exon 41136438 41137224 41136438 ID=Msa0405770-mRNA-1:exon:7998;Parent=Msa0405770-mRNA-1
chr3_2 five_prime_UTR 41137167 41137224 41137167 ID=Msa0405770-mRNA-1:five_prime_utr;Parent=Msa0405770-mRNA-1
chr3_2 CDS 41136438 41137166 41136438 ID=Msa0405770-mRNA-1:cds;Parent=Msa0405770-mRNA-1
chr3_2 CDS 41134161 41135036 41134161 ID=Msa0405770-mRNA-1:cds;Parent=Msa0405770-mRNA-1
chr3_2 three_prime_UTR 41134091 41134160 41134091 ID=Msa0405770-mRNA-1:three_prime_utr;Parent=Msa0405770-mRNA-1
Gene Sequence

>Msa0405770

ATGGTTTTTCTTTTAGCACTCATAAGCCTTACAAAATGGTTTTGGTACCATGTGATTGTCAAAACTTGTTATCAAACTGCAAGGATATTGATAAATAATGGCTTTAATTTTGTTGATCTTTCATCTAAGCCACTTCAACAACCTTCAAATATCCCTAGCATTTCGAATTGTGATTTGGAAGGTAGAGAGTCACAAACACTTGTTTGTGACATTCATAGTGTCCTCTTAAAGACTCATTATTTCTTTCCTTATTTCATGCTTGTTGCCTTCGAAGGTGGTAGCATTTTAAGAGCTTTTCTTTTACTTTGTTCATGTCCTATATTATGCTTTTTGAGCTATGAACATAAACTTAAAGTCATGATCTTCATCACTTTTTGTGGACTGAAAATAAAGGACATGGAAATGACTGCAAGGGTAGTTTTACCAAAGTTTTACATGGAGAATCTTAACCTTAAGGCTTATGAGGTTTTGTCTTCAGTAGGATCAAGAGTTTTCTTCACTTGTGTGCCTAAAGTTATGGTGGAAGGGTTTCTTAAGGAATATTTGAATGGTGATGATGTTGTAGCTACAGAGTTACACACTGTTGGATGCTACTTCACTGGTTTGATTTCTAGGCATGGTTTGGTTGATAAGGATAGTGCTCTCATTGATTATTTTGGATATACAAAGCCTGATTTAGGAATTGGAAGCACATGTGTCAATGATCATCATTTTATCTCTTATTGTAAGGAAGCTTATGTGGTGAGCAATGAAATATGTCCAAGTTCAATTATGCCAAGGGAAAAGTATCCAAAGCCATTAATATTTCATGATGGAAGACTAGCATTTTTCCCTACACCTTCTTCAACTCTATACATGTTCATGTGGCTTCCAATTGCAATTCCATTATCAATTTATAGATTATTTCTTGGGACAATAGTTTATTACAAATGGGGACTTGCATTAGTAGCATATAGTGGTATAACTATAAATATCAAAGGCTATAGTATTAGTAACCCTAAAAAAAATTCAATAACAAATAAAGGTGTACTCTATGTTTGTACACATAGGACATTATTAGATCCTGTTTTTCTTAGCATGAGTTTGAGAAAACCTTTGACTACGGTAACTTATAGCTTAAGCAAAGTGTCAGAGATTATGTCTCCTATAAAGACAATGAGTTTAACAAGGGACAAAGAACAAGATAGAGAAACAATGCAAAGGTTGTTAAGTGAAGGTGATTTAGTTGTGTGTCCTGAAGGAACAACTTGTAGGGAGCCTTATCTATTGAGATTTAGTTCACTTTTTGCTGAACTTGCTGATGAGATTGTTCCTGTGGCTATGAATGTTAATGTGAGTATGTTTTATGGTACAACTGCTAATGGATTAAAATGGTTGGACTCTTTTCTATTTTTGATGAATCCATGGCCTAGTTATAATATTGAAGTACTTGAAAAGGTTCCAAAAGAACTCACTTGTGCTGGTGGAAAGTCTTCTTTTGAAGTGGCTAACTATATACAAAAAGAGTTGGGTAATGCTTTGGGATTTGAGTGTACCGATATTACAAGGAGGGATAAATATATGATGTTAGCGGGGAATGAAGGTGTTGTTCAAAAAAAGAAGTGA

Protein sequence

>Msa0405770

MVFLLALISLTKWFWYHVIVKTCYQTARILINNGFNFVDLSSKPLQQPSNIPSISNCDLEGRESQTLVCDIHSVLLKTHYFFPYFMLVAFEGGSILRAFLLLCSCPILCFLSYEHKLKVMIFITFCGLKIKDMEMTARVVLPKFYMENLNLKAYEVLSSVGSRVFFTCVPKVMVEGFLKEYLNGDDVVATELHTVGCYFTGLISRHGLVDKDSALIDYFGYTKPDLGIGSTCVNDHHFISYCKEAYVVSNEICPSSIMPREKYPKPLIFHDGRLAFFPTPSSTLYMFMWLPIAIPLSIYRLFLGTIVYYKWGLALVAYSGITINIKGYSISNPKKNSITNKGVLYVCTHRTLLDPVFLSMSLRKPLTTVTYSLSKVSEIMSPIKTMSLTRDKEQDRETMQRLLSEGDLVVCPEGTTCREPYLLRFSSLFAELADEIVPVAMNVNVSMFYGTTANGLKWLDSFLFLMNPWPSYNIEVLEKVPKELTCAGGKSSFEVANYIQKELGNALGFECTDITRRDKYMMLAGNEGVVQKKK*