Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0405770 | XP_039687130.1 | 90.075 | 534 | 48 | 1 | 1 | 534 | 1 | 529 | 0.0 | 997 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0405770 | sp|Q9SHJ5|GPAT1_ARATH | 51.701 | 588 | 224 | 12 | 1 | 531 | 1 | 585 | 0.0 | 565 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0405770 | A0A396IMT2 | 90.075 | 534 | 48 | 1 | 1 | 534 | 1 | 529 | 0.0 | 997 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0012440 | Msa0405770 | 0.824202 | 9.170803e-54 | -8.615850e-47 |
Msa0057240 | Msa0405770 | 0.824909 | 6.252162e-54 | -8.615850e-47 |
Msa0094100 | Msa0405770 | 0.802499 | 5.449888e-49 | -8.615850e-47 |
Msa0149170 | Msa0405770 | 0.803247 | 3.818443e-49 | -8.615850e-47 |
Msa0149560 | Msa0405770 | 0.814899 | 1.217772e-51 | -8.615850e-47 |
Msa0217400 | Msa0405770 | 0.805628 | 1.217604e-49 | -8.615850e-47 |
Msa0368660 | Msa0405770 | 0.802220 | 6.221904e-49 | -8.615850e-47 |
Msa0405760 | Msa0405770 | 0.838111 | 3.491059e-57 | -8.615850e-47 |
Msa0405770 | Msa0480320 | 0.819513 | 1.116672e-52 | -8.615850e-47 |
Msa0405770 | Msa0484690 | 0.835597 | 1.529645e-56 | -8.615850e-47 |
Msa0405770 | Msa0490350 | 0.805449 | 1.327722e-49 | -8.615850e-47 |
Msa0405770 | Msa0498830 | 0.826979 | 2.014561e-54 | -8.615850e-47 |
Msa0405770 | Msa0498840 | 0.845456 | 4.015148e-59 | -8.615850e-47 |
Msa0405770 | Msa0508200 | 0.812665 | 3.782283e-51 | -8.615850e-47 |
Msa0405770 | Msa0880710 | 0.803858 | 2.851705e-49 | -8.615850e-47 |
Msa0405770 | Msa0946320 | 0.815540 | 8.774967e-52 | -8.615850e-47 |
Msa0405770 | Msa1069300 | 0.800963 | 1.126024e-48 | -8.615850e-47 |
Msa0405770 | Msa1113200 | 0.804759 | 1.851368e-49 | -8.615850e-47 |
Msa0405770 | Msa1374440 | 0.838497 | 2.776470e-57 | -8.615850e-47 |
Msa0405770 | Msa1422270 | 0.817368 | 3.420306e-52 | -8.615850e-47 |
Msa0405770 | Msa1429420 | 0.817845 | 2.669815e-52 | -8.615850e-47 |
Msa0265820 | Msa0405770 | 0.812143 | 4.916899e-51 | -8.615850e-47 |
Msa0292180 | Msa0405770 | 0.804208 | 2.411691e-49 | -8.615850e-47 |
Msa0315240 | Msa0405770 | 0.816725 | 4.769330e-52 | -8.615850e-47 |
Msa0359110 | Msa0405770 | 0.864015 | 1.647705e-64 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0405770 | MtrunA17_Chr3g0096481 | 90.075 | 534 | 48 | 1 | 1 | 534 | 1 | 529 | 0.0 | 997 |
Msa0405770 | MtrunA17_Chr5g0443341 | 68.037 | 535 | 164 | 3 | 1 | 532 | 1 | 531 | 0.0 | 734 |
Msa0405770 | MtrunA17_Chr3g0096581 | 93.145 | 248 | 17 | 0 | 2 | 249 | 1 | 248 | 1.63e-172 | 487 |
Msa0405770 | MtrunA17_Chr3g0096591 | 80.220 | 273 | 52 | 1 | 258 | 530 | 1 | 271 | 5.18e-161 | 458 |
Msa0405770 | MtrunA17_Chr1g0170421 | 46.356 | 494 | 253 | 6 | 49 | 533 | 39 | 529 | 3.23e-152 | 448 |
Msa0405770 | MtrunA17_Chr7g0241831 | 48.156 | 488 | 229 | 8 | 60 | 534 | 19 | 495 | 3.53e-152 | 444 |
Msa0405770 | MtrunA17_Chr4g0005991 | 46.881 | 497 | 239 | 9 | 52 | 534 | 8 | 493 | 6.61e-151 | 441 |
Msa0405770 | MtrunA17_Chr5g0425071 | 47.817 | 481 | 231 | 10 | 64 | 534 | 15 | 485 | 3.05e-149 | 437 |
Msa0405770 | MtrunA17_Chr1g0194391 | 44.673 | 535 | 265 | 11 | 14 | 534 | 16 | 533 | 1.67e-143 | 424 |
Msa0405770 | MtrunA17_Chr8g0348781 | 42.885 | 506 | 261 | 10 | 44 | 531 | 3 | 498 | 1.15e-139 | 413 |
Msa0405770 | MtrunA17_Chr5g0435581 | 43.451 | 481 | 249 | 9 | 65 | 531 | 2 | 473 | 8.38e-129 | 385 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0405770 | AT1G06520.1 | 51.701 | 588 | 224 | 12 | 1 | 531 | 1 | 585 | 0.0 | 565 |
Msa0405770 | AT4G01950.1 | 46.521 | 503 | 250 | 12 | 41 | 532 | 25 | 519 | 4.06e-146 | 430 |
Msa0405770 | AT4G01950.2 | 46.521 | 503 | 250 | 12 | 41 | 532 | 53 | 547 | 8.04e-146 | 431 |
Msa0405770 | AT2G38110.1 | 45.842 | 493 | 250 | 8 | 53 | 534 | 12 | 498 | 6.96e-144 | 424 |
Msa0405770 | AT1G02390.1 | 45.312 | 512 | 247 | 10 | 44 | 533 | 30 | 530 | 1.28e-141 | 419 |
Msa0405770 | AT1G01610.1 | 43.487 | 499 | 264 | 9 | 44 | 531 | 3 | 494 | 4.68e-140 | 414 |
Msa0405770 | AT4G00400.1 | 42.771 | 498 | 268 | 8 | 44 | 531 | 3 | 493 | 2.37e-133 | 397 |
Msa0405770 | AT3G11430.1 | 45.114 | 481 | 247 | 11 | 61 | 530 | 7 | 481 | 1.13e-129 | 387 |
Msa0405770 | AT5G06090.1 | 44.283 | 481 | 247 | 10 | 64 | 531 | 8 | 480 | 2.18e-126 | 379 |
Msa0405770 | AT3G11325.1 | 33.333 | 462 | 206 | 9 | 75 | 531 | 6 | 370 | 2.70e-72 | 236 |
Msa0405770 | AT3G11325.2 | 33.333 | 462 | 206 | 9 | 75 | 531 | 9 | 373 | 3.23e-72 | 236 |
Find 97 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTGCTCTCATTGATTATTT+TGG | 0.116145 | 3_2:-41136508 | Msa0405770:CDS |
GTTAAACTCATTGTCTTTAT+AGG | 0.150817 | 3_2:+41134600 | None:intergenic |
ACTTCACTGGTTTGATTTCT+AGG | 0.170723 | 3_2:-41136552 | Msa0405770:CDS |
CCAGCACAAGTGAGTTCTTT+TGG | 0.209499 | 3_2:+41134303 | None:intergenic |
CTTCCATCATGAAATATTAA+TGG | 0.220853 | 3_2:+41134948 | None:intergenic |
GGATATACAAAGCCTGATTT+AGG | 0.256768 | 3_2:-41136487 | Msa0405770:CDS |
CACTCATAAGCCTTACAAAA+TGG | 0.285889 | 3_2:-41137128 | Msa0405770:CDS |
ACAAAGCCTGATTTAGGAAT+TGG | 0.291687 | 3_2:-41136481 | Msa0405770:CDS |
AACTATCACAGACAATTAAT+AGG | 0.304521 | 3_2:-41137184 | Msa0405770:five_prime_UTR |
TAAGCCTTACAAAATGGTTT+TGG | 0.310980 | 3_2:-41137122 | Msa0405770:CDS |
TCATGAAATATTAATGGCTT+TGG | 0.325007 | 3_2:+41134954 | None:intergenic |
AAAAGAGTTGGGTAATGCTT+TGG | 0.327807 | 3_2:-41134244 | Msa0405770:CDS |
GGACAATAGTTTATTACAAA+TGG | 0.339581 | 3_2:-41134833 | Msa0405770:CDS |
AAAGAGTTGGGTAATGCTTT+GGG | 0.342603 | 3_2:-41134243 | Msa0405770:CDS |
TTTATCCCTCCTTGTAATAT+CGG | 0.346128 | 3_2:+41134209 | None:intergenic |
TAGCATTTCGAATTGTGATT+TGG | 0.346495 | 3_2:-41136989 | Msa0405770:CDS |
TCAATTTATAGATTATTTCT+TGG | 0.350275 | 3_2:-41134855 | Msa0405770:CDS |
CATGGAGAATCTTAACCTTA+AGG | 0.353285 | 3_2:-41136710 | Msa0405770:CDS |
ATTGATAATGGAATTGCAAT+TGG | 0.355353 | 3_2:+41134873 | None:intergenic |
AATAATCTATAAATTGATAA+TGG | 0.356165 | 3_2:+41134861 | None:intergenic |
TCCCTACAAGTTGTTCCTTC+AGG | 0.358949 | 3_2:+41134510 | None:intergenic |
GCAAGGATATTGATAAATAA+TGG | 0.360558 | 3_2:-41137066 | Msa0405770:CDS |
CAATTTATAGATTATTTCTT+GGG | 0.369337 | 3_2:-41134854 | Msa0405770:CDS |
TCTTAACCTTAAGGCTTATG+AGG | 0.373376 | 3_2:-41136701 | Msa0405770:CDS |
AAGGCAACAAGCATGAAATA+AGG | 0.375905 | 3_2:+41136898 | None:intergenic |
GTGCTTCCAATTCCTAAATC+AGG | 0.378611 | 3_2:+41136475 | None:intergenic |
CACTTGTGTGCCTAAAGTTA+TGG | 0.385069 | 3_2:-41136647 | Msa0405770:CDS |
GACAATAGTTTATTACAAAT+GGG | 0.398640 | 3_2:-41134832 | Msa0405770:CDS |
TATGGTGGAAGGGTTTCTTA+AGG | 0.406410 | 3_2:-41136629 | Msa0405770:CDS |
TAGGCATGGTTTGGTTGATA+AGG | 0.411704 | 3_2:-41136533 | Msa0405770:CDS |
CAACTGCTAATGGATTAAAA+TGG | 0.424230 | 3_2:-41134392 | Msa0405770:CDS |
AGATTCTCCATGTAAAACTT+TGG | 0.427361 | 3_2:+41136721 | None:intergenic |
GATAAATATATGATGTTAGC+GGG | 0.428636 | 3_2:-41134192 | Msa0405770:CDS |
TAATATTGAAGTACTTGAAA+AGG | 0.432261 | 3_2:-41134328 | Msa0405770:CDS |
TCCCTTGGCATAATTGAACT+TGG | 0.439028 | 3_2:+41134984 | None:intergenic |
TTTGATTTCTAGGCATGGTT+TGG | 0.440519 | 3_2:-41136542 | Msa0405770:CDS |
ACTATCACAGACAATTAATA+GGG | 0.448545 | 3_2:-41137183 | Msa0405770:five_prime_UTR |
TTTCTTAAGGAATATTTGAA+TGG | 0.451191 | 3_2:-41136616 | Msa0405770:CDS |
AGAAATAATGAGTCTTTAAG+AGG | 0.461316 | 3_2:+41136923 | None:intergenic |
TGCTAATGGATTAAAATGGT+TGG | 0.478561 | 3_2:-41134388 | Msa0405770:CDS |
TTTGAGAAAACCTTTGACTA+CGG | 0.479760 | 3_2:-41134661 | Msa0405770:CDS |
TTCATGCTTGTTGCCTTCGA+AGG | 0.481936 | 3_2:-41136892 | Msa0405770:CDS |
AACCCTTCCACCATAACTTT+AGG | 0.482102 | 3_2:+41136637 | None:intergenic |
ACAAAACCTCATAAGCCTTA+AGG | 0.483043 | 3_2:+41136695 | None:intergenic |
ACTGTTGGATGCTACTTCAC+TGG | 0.486698 | 3_2:-41136565 | Msa0405770:CDS |
ACTGGTTTGATTTCTAGGCA+TGG | 0.499174 | 3_2:-41136547 | Msa0405770:CDS |
CCAAAAGAACTCACTTGTGC+TGG | 0.501281 | 3_2:-41134303 | Msa0405770:CDS |
GTCCTGAAGGAACAACTTGT+AGG | 0.502469 | 3_2:-41134512 | Msa0405770:CDS |
ATGATGTTAGCGGGGAATGA+AGG | 0.507843 | 3_2:-41134183 | Msa0405770:CDS |
GAACTAAATCTCAATAGATA+AGG | 0.509333 | 3_2:+41134486 | None:intergenic |
TATAGAGTTGAAGAAGGTGT+AGG | 0.516947 | 3_2:+41134912 | None:intergenic |
GAAATGCTAGGGATATTTGA+AGG | 0.521655 | 3_2:+41137003 | None:intergenic |
AAAGAACTCACTTGTGCTGG+TGG | 0.522091 | 3_2:-41134300 | Msa0405770:CDS |
AAATCACAATTCGAAATGCT+AGG | 0.525785 | 3_2:+41136991 | None:intergenic |
AAAATGAATGAAAGAAAATG+AGG | 0.533046 | 3_2:-41134096 | Msa0405770:three_prime_UTR |
ATAGAGTTGAAGAAGGTGTA+GGG | 0.537173 | 3_2:+41134913 | None:intergenic |
AGTACTTCAATATTATAACT+AGG | 0.538955 | 3_2:+41134336 | None:intergenic |
ATATTTGAAGGTTGTTGAAG+TGG | 0.540654 | 3_2:+41137015 | None:intergenic |
AAGCCATTAATATTTCATGA+TGG | 0.544073 | 3_2:-41134951 | Msa0405770:CDS |
TCAATATTATAACTAGGCCA+TGG | 0.546573 | 3_2:+41134342 | None:intergenic |
CTTGCATTAGTAGCATATAG+TGG | 0.547683 | 3_2:-41134807 | Msa0405770:CDS |
TCCAAGTTCAATTATGCCAA+GGG | 0.549008 | 3_2:-41134985 | Msa0405770:CDS |
TCCTGAAGGAACAACTTGTA+GGG | 0.557385 | 3_2:-41134511 | Msa0405770:CDS |
GCTACAGAGTTACACACTGT+TGG | 0.560729 | 3_2:-41136580 | Msa0405770:CDS |
GTCCAAGTTCAATTATGCCA+AGG | 0.561023 | 3_2:-41134986 | Msa0405770:CDS |
CTATAAGTTACCGTAGTCAA+AGG | 0.562718 | 3_2:+41134651 | None:intergenic |
AATCACAATTCGAAATGCTA+GGG | 0.567925 | 3_2:+41136992 | None:intergenic |
TTGAGTGTACCGATATTACA+AGG | 0.571739 | 3_2:-41134218 | Msa0405770:CDS |
GTGCCTAAAGTTATGGTGGA+AGG | 0.572751 | 3_2:-41136640 | Msa0405770:CDS |
GGATAAATATATGATGTTAG+CGG | 0.577915 | 3_2:-41134193 | Msa0405770:CDS |
GGTATAACTATAAATATCAA+AGG | 0.580246 | 3_2:-41134786 | Msa0405770:CDS |
TGCTGATGAGATTGTTCCTG+TGG | 0.580570 | 3_2:-41134448 | Msa0405770:CDS |
ATGCAAAGGTTGTTAAGTGA+AGG | 0.581573 | 3_2:-41134549 | Msa0405770:CDS |
ATGCTTGTTGCCTTCGAAGG+TGG | 0.582726 | 3_2:-41136889 | Msa0405770:CDS |
ACATTAACATTCATAGCCAC+AGG | 0.584016 | 3_2:+41134432 | None:intergenic |
CAACTCTATACATGTTCATG+TGG | 0.591449 | 3_2:-41134899 | Msa0405770:CDS |
GATTTAGTTGTGTGTCCTGA+AGG | 0.591518 | 3_2:-41134525 | Msa0405770:CDS |
ATTTCGAATTGTGATTTGGA+AGG | 0.597964 | 3_2:-41136985 | Msa0405770:CDS |
AACATGTATAGAGTTGAAGA+AGG | 0.599365 | 3_2:+41134906 | None:intergenic |
AAACTTGTTATCAAACTGCA+AGG | 0.600244 | 3_2:-41137083 | Msa0405770:CDS |
AGGACATGGAAATGACTGCA+AGG | 0.600593 | 3_2:-41136753 | Msa0405770:CDS |
TGGACTGAAAATAAAGGACA+TGG | 0.602277 | 3_2:-41136767 | Msa0405770:CDS |
TGCCTAAAGTTATGGTGGAA+GGG | 0.603544 | 3_2:-41136639 | Msa0405770:CDS |
AAATGAATGAAAGAAAATGA+GGG | 0.605896 | 3_2:-41134095 | Msa0405770:three_prime_UTR |
GGACATGGAAATGACTGCAA+GGG | 0.612908 | 3_2:-41136752 | Msa0405770:CDS |
ACAATAGTTTATTACAAATG+GGG | 0.618107 | 3_2:-41134831 | Msa0405770:CDS |
TAAAATGCTACCACCTTCGA+AGG | 0.629864 | 3_2:+41136879 | None:intergenic |
AAGATAGAGAAACAATGCAA+AGG | 0.634514 | 3_2:-41134563 | Msa0405770:CDS |
GTGTACCGATATTACAAGGA+GGG | 0.640930 | 3_2:-41134214 | Msa0405770:CDS |
TAAAGACAATGAGTTTAACA+AGG | 0.642663 | 3_2:-41134596 | Msa0405770:CDS |
TGAATGAAAGAAAATGAGGG+TGG | 0.643941 | 3_2:-41134092 | Msa0405770:three_prime_UTR |
TTGTGTGCCTAAAGTTATGG+TGG | 0.649697 | 3_2:-41136644 | Msa0405770:CDS |
TGAATGATAGGAAGCTTATG+TGG | 0.652223 | 3_2:-41135024 | Msa0405770:intron |
ATAAATATATGATGTTAGCG+GGG | 0.652719 | 3_2:-41134191 | Msa0405770:CDS |
TACTCTATGTTTGTACACAT+AGG | 0.654259 | 3_2:-41134716 | Msa0405770:CDS |
AAAGACAATGAGTTTAACAA+GGG | 0.667075 | 3_2:-41134595 | Msa0405770:CDS |
AGTGTACCGATATTACAAGG+AGG | 0.723370 | 3_2:-41134215 | Msa0405770:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAACTTATTGTTAATTA+GGG | + | chr3_2:41135121-41135140 | None:intergenic | 10.0% |
!! | AAAAAAACTTATTGTTAATT+AGG | + | chr3_2:41135122-41135141 | None:intergenic | 10.0% |
!!! | AATTAACAATAAGTTTTTTT+TGG | - | chr3_2:41135122-41135141 | Msa0405770:intron | 10.0% |
!!! | GTTAACAATAAATTTTTTAA+AGG | - | chr3_2:41135152-41135171 | Msa0405770:intron | 10.0% |
!! | GAATAAAATAAAATAAAATG+TGG | - | chr3_2:41136148-41136167 | Msa0405770:intron | 10.0% |
!! | AATAATCTATAAATTGATAA+TGG | + | chr3_2:41136435-41136454 | None:intergenic | 10.0% |
!!! | TTGTTATTGAATTTTTTTTA+GGG | + | chr3_2:41136548-41136567 | None:intergenic | 10.0% |
!!! | TTTGTTATTGAATTTTTTTT+AGG | + | chr3_2:41136549-41136568 | None:intergenic | 10.0% |
!! | AAAAATTCAATAACAAATAA+AGG | - | chr3_2:41136552-41136571 | Msa0405770:CDS | 10.0% |
!!! | ATAAGTTTTTTTTGGTAAAA+TGG | - | chr3_2:41135130-41135149 | Msa0405770:intron | 15.0% |
!!! | AGTAGTTTTTTTTTTTTTGA+AGG | - | chr3_2:41135702-41135721 | Msa0405770:intron | 15.0% |
!!! | ATTTTACTATGTTATTATAG+TGG | - | chr3_2:41136042-41136061 | Msa0405770:intron | 15.0% |
!!! | AAATTGAATACTTTTTTGTT+TGG | - | chr3_2:41136126-41136145 | Msa0405770:intron | 15.0% |
!!! | TCAATTTATAGATTATTTCT+TGG | - | chr3_2:41136438-41136457 | Msa0405770:CDS | 15.0% |
!!! | CAATTTATAGATTATTTCTT+GGG | - | chr3_2:41136439-41136458 | Msa0405770:CDS | 15.0% |
!! | AAAAAAAGAAGTGAAAATTA+TGG | - | chr3_2:41137141-41137160 | Msa0405770:CDS | 15.0% |
!!! | TTTTCTTTCATTCATTTTAT+GGG | + | chr3_2:41137195-41137214 | None:intergenic | 15.0% |
!!! | ATTTTCTTTCATTCATTTTA+TGG | + | chr3_2:41137196-41137215 | None:intergenic | 15.0% |
!! | TTTCTTAAGGAATATTTGAA+TGG | - | chr3_2:41134677-41134696 | Msa0405770:CDS | 20.0% |
!!! | TCATTTTATCTCTTATTGTA+AGG | - | chr3_2:41134856-41134875 | Msa0405770:CDS | 20.0% |
!! | ACATGTTAAGAATCTAAAAA+TGG | - | chr3_2:41134965-41134984 | Msa0405770:CDS | 20.0% |
!!! | CAAAGATAGAAATATTTTGT+TGG | + | chr3_2:41135059-41135078 | None:intergenic | 20.0% |
!!! | CAACAAAATATTTCTATCTT+TGG | - | chr3_2:41135057-41135076 | Msa0405770:intron | 20.0% |
!! | TAGTAAGTTCTTAAAATGAA+AGG | - | chr3_2:41135175-41135194 | Msa0405770:intron | 20.0% |
!!! | ATATACATATGAACATTTTC+TGG | + | chr3_2:41135266-41135285 | None:intergenic | 20.0% |
!! | AAATAAGTTATAATTACAGG+TGG | + | chr3_2:41135383-41135402 | None:intergenic | 20.0% |
!! | GTGAAATAAGTTATAATTAC+AGG | + | chr3_2:41135386-41135405 | None:intergenic | 20.0% |
!! | ACTAAATTAAAATTCAAGTG+AGG | + | chr3_2:41135530-41135549 | None:intergenic | 20.0% |
!!! | GTAAAACTGTTTTACATTAA+TGG | + | chr3_2:41135586-41135605 | None:intergenic | 20.0% |
!! | TAATTACCTTTACAAAAATG+AGG | + | chr3_2:41135647-41135666 | None:intergenic | 20.0% |
!!! | GAGTAGTTTTTTTTTTTTGA+AGG | - | chr3_2:41135736-41135755 | Msa0405770:intron | 20.0% |
!!! | ACTGCATTTTAAAATAGATA+AGG | + | chr3_2:41135912-41135931 | None:intergenic | 20.0% |
!! | TTTGTCAAAATATGTAAATG+TGG | - | chr3_2:41136003-41136022 | Msa0405770:intron | 20.0% |
!! | TTGTCAAAATATGTAAATGT+GGG | - | chr3_2:41136004-41136023 | Msa0405770:intron | 20.0% |
!!! | AGTATTCAATTTCTTTCTTT+TGG | + | chr3_2:41136118-41136137 | None:intergenic | 20.0% |
!!! | TGTACGTTTTCATTTATTTT+TGG | - | chr3_2:41136185-41136204 | Msa0405770:intron | 20.0% |
!!! | TTTTGGCATATGATTATAAT+TGG | - | chr3_2:41136202-41136221 | Msa0405770:intron | 20.0% |
!! | ATAATGTAGTTAGTTAGATA+AGG | + | chr3_2:41136244-41136263 | None:intergenic | 20.0% |
!! | ACATTATTACAATGAATGAT+AGG | - | chr3_2:41136257-41136276 | Msa0405770:intron | 20.0% |
!! | GACAATAGTTTATTACAAAT+GGG | - | chr3_2:41136461-41136480 | Msa0405770:CDS | 20.0% |
!! | ACAATAGTTTATTACAAATG+GGG | - | chr3_2:41136462-41136481 | Msa0405770:CDS | 20.0% |
!! | GGTATAACTATAAATATCAA+AGG | - | chr3_2:41136507-41136526 | Msa0405770:CDS | 20.0% |
!! | AGTACTTCAATATTATAACT+AGG | + | chr3_2:41136960-41136979 | None:intergenic | 20.0% |
!!! | TAATATTGAAGTACTTGAAA+AGG | - | chr3_2:41136965-41136984 | Msa0405770:CDS | 20.0% |
!! | TAACTATATACAAAAAGAGT+TGG | - | chr3_2:41137037-41137056 | Msa0405770:CDS | 20.0% |
!! | AACTATATACAAAAAGAGTT+GGG | - | chr3_2:41137038-41137057 | Msa0405770:CDS | 20.0% |
!! | AAAATGAATGAAAGAAAATG+AGG | - | chr3_2:41137197-41137216 | Msa0405770:five_prime_UTR | 20.0% |
!! | AAATGAATGAAAGAAAATGA+GGG | - | chr3_2:41137198-41137217 | Msa0405770:five_prime_UTR | 20.0% |
! | AACTATCACAGACAATTAAT+AGG | - | chr3_2:41134109-41134128 | Msa0405770:three_prime_UTR | 25.0% |
! | ACTATCACAGACAATTAATA+GGG | - | chr3_2:41134110-41134129 | Msa0405770:three_prime_UTR | 25.0% |
! | GCAAGGATATTGATAAATAA+TGG | - | chr3_2:41134227-41134246 | Msa0405770:CDS | 25.0% |
! | AGAAATAATGAGTCTTTAAG+AGG | + | chr3_2:41134373-41134392 | None:intergenic | 25.0% |
!! | TAGCTCAAAAAGCATAATAT+AGG | + | chr3_2:41134467-41134486 | None:intergenic | 25.0% |
!!! | TTTTTGTGGACTGAAAATAA+AGG | - | chr3_2:41134520-41134539 | Msa0405770:CDS | 25.0% |
!! | AGTTTTACCAAAGTTTTACA+TGG | - | chr3_2:41134565-41134584 | Msa0405770:CDS | 25.0% |
! | TTAGCTATATATCATGTTCT+TGG | - | chr3_2:41134902-41134921 | Msa0405770:CDS | 25.0% |
! | TGTTCTTGGTATTAATTAAC+TGG | - | chr3_2:41134916-41134935 | Msa0405770:CDS | 25.0% |
! | GTTCTTGGTATTAATTAACT+GGG | - | chr3_2:41134917-41134936 | Msa0405770:CDS | 25.0% |
! | AGTTCTTAAAATGAAAGGAA+TGG | - | chr3_2:41135180-41135199 | Msa0405770:intron | 25.0% |
! | GCTCAAATCAAATGTTTATA+CGG | + | chr3_2:41135244-41135263 | None:intergenic | 25.0% |
! | TTATAATTACAGGTGGTTAA+GGG | + | chr3_2:41135376-41135395 | None:intergenic | 25.0% |
! | AAATTAAAATTCAAGTGAGG+CGG | + | chr3_2:41135527-41135546 | None:intergenic | 25.0% |
!!! | ACATAACCTCATTTTTGTAA+AGG | - | chr3_2:41135638-41135657 | Msa0405770:intron | 25.0% |
! | ATTATACACTTCTTGAATAC+CGG | - | chr3_2:41135862-41135881 | Msa0405770:intron | 25.0% |
! | TGTCAAAATATGTAAATGTG+GGG | - | chr3_2:41136005-41136024 | Msa0405770:intron | 25.0% |
! | TCATGAAATATTAATGGCTT+TGG | + | chr3_2:41136342-41136361 | None:intergenic | 25.0% |
! | AAGCCATTAATATTTCATGA+TGG | - | chr3_2:41136342-41136361 | Msa0405770:intron | 25.0% |
! | CTTCCATCATGAAATATTAA+TGG | + | chr3_2:41136348-41136367 | None:intergenic | 25.0% |
!!! | ATTGATAATGGAATTGCAAT+TGG | + | chr3_2:41136423-41136442 | None:intergenic | 25.0% |
! | GGACAATAGTTTATTACAAA+TGG | - | chr3_2:41136460-41136479 | Msa0405770:CDS | 25.0% |
! | GTTAAACTCATTGTCTTTAT+AGG | + | chr3_2:41136696-41136715 | None:intergenic | 25.0% |
! | TAAAGACAATGAGTTTAACA+AGG | - | chr3_2:41136697-41136716 | Msa0405770:CDS | 25.0% |
! | AAAGACAATGAGTTTAACAA+GGG | - | chr3_2:41136698-41136717 | Msa0405770:CDS | 25.0% |
! | GAACTAAATCTCAATAGATA+AGG | + | chr3_2:41136810-41136829 | None:intergenic | 25.0% |
!! | GTTAATGTGAGTATGTTTTA+TGG | - | chr3_2:41136876-41136895 | Msa0405770:CDS | 25.0% |
!!! | TTCTATTTTTGATGAATCCA+TGG | - | chr3_2:41136934-41136953 | Msa0405770:CDS | 25.0% |
! | GGATAAATATATGATGTTAG+CGG | - | chr3_2:41137100-41137119 | Msa0405770:CDS | 25.0% |
! | GATAAATATATGATGTTAGC+GGG | - | chr3_2:41137101-41137120 | Msa0405770:CDS | 25.0% |
! | ATAAATATATGATGTTAGCG+GGG | - | chr3_2:41137102-41137121 | Msa0405770:CDS | 25.0% |
GGGAGAAAAACTGAAAAAAA+TGG | - | chr3_2:41134130-41134149 | Msa0405770:three_prime_UTR | 30.0% | |
! | TAAGCCTTACAAAATGGTTT+TGG | - | chr3_2:41134171-41134190 | Msa0405770:CDS | 30.0% |
!! | AACAAGTTTTGACAATCACA+TGG | + | chr3_2:41134199-41134218 | None:intergenic | 30.0% |
!! | AAACTTGTTATCAAACTGCA+AGG | - | chr3_2:41134210-41134229 | Msa0405770:CDS | 30.0% |
ATATTTGAAGGTTGTTGAAG+TGG | + | chr3_2:41134281-41134300 | None:intergenic | 30.0% | |
AATCACAATTCGAAATGCTA+GGG | + | chr3_2:41134304-41134323 | None:intergenic | 30.0% | |
AAATCACAATTCGAAATGCT+AGG | + | chr3_2:41134305-41134324 | None:intergenic | 30.0% | |
TAGCATTTCGAATTGTGATT+TGG | - | chr3_2:41134304-41134323 | Msa0405770:CDS | 30.0% | |
! | ATTTCGAATTGTGATTTGGA+AGG | - | chr3_2:41134308-41134327 | Msa0405770:CDS | 30.0% |
!!! | ATGATCTTCATCACTTTTTG+TGG | - | chr3_2:41134506-41134525 | Msa0405770:CDS | 30.0% |
AGATTCTCCATGTAAAACTT+TGG | + | chr3_2:41134575-41134594 | None:intergenic | 30.0% | |
!! | AGTGCTCTCATTGATTATTT+TGG | - | chr3_2:41134785-41134804 | Msa0405770:CDS | 30.0% |
GTTATAATTACAGGTGGTTA+AGG | + | chr3_2:41135377-41135396 | None:intergenic | 30.0% | |
!! | AAAGTATTGTGATCTCTCAT+TGG | - | chr3_2:41135765-41135784 | Msa0405770:intron | 30.0% |
!!! | TTTTTGAAGTGATCTCTCAT+TGG | - | chr3_2:41135803-41135822 | Msa0405770:intron | 30.0% |
CAACGTCAAAATTACATTGA+CGG | - | chr3_2:41135830-41135849 | Msa0405770:intron | 30.0% | |
TCAAAGATTTCAAGAACAAC+CGG | + | chr3_2:41135884-41135903 | None:intergenic | 30.0% | |
AAAAGTGATTCAAGCGAAAT+GGG | - | chr3_2:41135977-41135996 | Msa0405770:intron | 30.0% | |
GTCAAAATATGTAAATGTGG+GGG | - | chr3_2:41136006-41136025 | Msa0405770:intron | 30.0% | |
TCAAAATATGTAAATGTGGG+GGG | - | chr3_2:41136007-41136026 | Msa0405770:intron | 30.0% | |
AAATGAAAACGTACAGCTTT+GGG | + | chr3_2:41136180-41136199 | None:intergenic | 30.0% | |
TAAATGAAAACGTACAGCTT+TGG | + | chr3_2:41136181-41136200 | None:intergenic | 30.0% | |
AACATGTATAGAGTTGAAGA+AGG | + | chr3_2:41136390-41136409 | None:intergenic | 30.0% | |
TACTCTATGTTTGTACACAT+AGG | - | chr3_2:41136577-41136596 | Msa0405770:CDS | 30.0% | |
AAACTCATGCTAAGAAAAAC+AGG | + | chr3_2:41136615-41136634 | None:intergenic | 30.0% | |
TTTGAGAAAACCTTTGACTA+CGG | - | chr3_2:41136632-41136651 | Msa0405770:CDS | 30.0% | |
AAGATAGAGAAACAATGCAA+AGG | - | chr3_2:41136730-41136749 | Msa0405770:CDS | 30.0% | |
! | TTTTATGGTACAACTGCTAA+TGG | - | chr3_2:41136891-41136910 | Msa0405770:CDS | 30.0% |
!! | CAACTGCTAATGGATTAAAA+TGG | - | chr3_2:41136901-41136920 | Msa0405770:CDS | 30.0% |
!! | TGCTAATGGATTAAAATGGT+TGG | - | chr3_2:41136905-41136924 | Msa0405770:CDS | 30.0% |
TCAATATTATAACTAGGCCA+TGG | + | chr3_2:41136954-41136973 | None:intergenic | 30.0% | |
TTTATCCCTCCTTGTAATAT+CGG | + | chr3_2:41137087-41137106 | None:intergenic | 30.0% | |
CACTCATAAGCCTTACAAAA+TGG | - | chr3_2:41134165-41134184 | Msa0405770:CDS | 35.0% | |
! | GGTACCAAAACCATTTTGTA+AGG | + | chr3_2:41134178-41134197 | None:intergenic | 35.0% |
GAAATGCTAGGGATATTTGA+AGG | + | chr3_2:41134293-41134312 | None:intergenic | 35.0% | |
AAGGCAACAAGCATGAAATA+AGG | + | chr3_2:41134398-41134417 | None:intergenic | 35.0% | |
TGGACTGAAAATAAAGGACA+TGG | - | chr3_2:41134526-41134545 | Msa0405770:CDS | 35.0% | |
CATGGAGAATCTTAACCTTA+AGG | - | chr3_2:41134583-41134602 | Msa0405770:CDS | 35.0% | |
TCTTAACCTTAAGGCTTATG+AGG | - | chr3_2:41134592-41134611 | Msa0405770:CDS | 35.0% | |
ACAAAACCTCATAAGCCTTA+AGG | + | chr3_2:41134601-41134620 | None:intergenic | 35.0% | |
!! | TATGAGGTTTTGTCTTCAGT+AGG | - | chr3_2:41134608-41134627 | Msa0405770:CDS | 35.0% |
!! | ACTTCACTGGTTTGATTTCT+AGG | - | chr3_2:41134741-41134760 | Msa0405770:CDS | 35.0% |
! | TTTGATTTCTAGGCATGGTT+TGG | - | chr3_2:41134751-41134770 | Msa0405770:CDS | 35.0% |
GGATATACAAAGCCTGATTT+AGG | - | chr3_2:41134806-41134825 | Msa0405770:CDS | 35.0% | |
ACAAAGCCTGATTTAGGAAT+TGG | - | chr3_2:41134812-41134831 | Msa0405770:CDS | 35.0% | |
GAGGTTATGTGACAAAATAG+AGG | + | chr3_2:41135628-41135647 | None:intergenic | 35.0% | |
GAAAAGTGATTCAAGCGAAA+TGG | - | chr3_2:41135976-41135995 | Msa0405770:intron | 35.0% | |
TCATCTAGGTATGATACTTG+TGG | + | chr3_2:41136089-41136108 | None:intergenic | 35.0% | |
!!! | TCTTTTGGCTTGTATCATCT+AGG | + | chr3_2:41136103-41136122 | None:intergenic | 35.0% |
TGAATGATAGGAAGCTTATG+TGG | - | chr3_2:41136269-41136288 | Msa0405770:intron | 35.0% | |
TCCAAGTTCAATTATGCCAA+GGG | - | chr3_2:41136308-41136327 | Msa0405770:intron | 35.0% | |
! | ATAGAGTTGAAGAAGGTGTA+GGG | + | chr3_2:41136383-41136402 | None:intergenic | 35.0% |
! | TATAGAGTTGAAGAAGGTGT+AGG | + | chr3_2:41136384-41136403 | None:intergenic | 35.0% |
CAACTCTATACATGTTCATG+TGG | - | chr3_2:41136394-41136413 | Msa0405770:intron | 35.0% | |
CTTGCATTAGTAGCATATAG+TGG | - | chr3_2:41136486-41136505 | Msa0405770:CDS | 35.0% | |
CTATAAGTTACCGTAGTCAA+AGG | + | chr3_2:41136645-41136664 | None:intergenic | 35.0% | |
ATGCAAAGGTTGTTAAGTGA+AGG | - | chr3_2:41136744-41136763 | Msa0405770:CDS | 35.0% | |
ACATTAACATTCATAGCCAC+AGG | + | chr3_2:41136864-41136883 | None:intergenic | 35.0% | |
!! | TGGAAAGTCTTCTTTTGAAG+TGG | - | chr3_2:41137013-41137032 | Msa0405770:CDS | 35.0% |
AAAAGAGTTGGGTAATGCTT+TGG | - | chr3_2:41137049-41137068 | Msa0405770:CDS | 35.0% | |
AAAGAGTTGGGTAATGCTTT+GGG | - | chr3_2:41137050-41137069 | Msa0405770:CDS | 35.0% | |
! | TTGAGTGTACCGATATTACA+AGG | - | chr3_2:41137075-41137094 | Msa0405770:CDS | 35.0% |
TGAATGAAAGAAAATGAGGG+TGG | - | chr3_2:41137201-41137220 | Msa0405770:five_prime_UTR | 35.0% | |
TAAAATGCTACCACCTTCGA+AGG | + | chr3_2:41134417-41134436 | None:intergenic | 40.0% | |
CACTTGTGTGCCTAAAGTTA+TGG | - | chr3_2:41134646-41134665 | Msa0405770:CDS | 40.0% | |
TTGTGTGCCTAAAGTTATGG+TGG | - | chr3_2:41134649-41134668 | Msa0405770:CDS | 40.0% | |
! | TGCCTAAAGTTATGGTGGAA+GGG | - | chr3_2:41134654-41134673 | Msa0405770:CDS | 40.0% |
AACCCTTCCACCATAACTTT+AGG | + | chr3_2:41134659-41134678 | None:intergenic | 40.0% | |
! | TATGGTGGAAGGGTTTCTTA+AGG | - | chr3_2:41134664-41134683 | Msa0405770:CDS | 40.0% |
!! | ACTGGTTTGATTTCTAGGCA+TGG | - | chr3_2:41134746-41134765 | Msa0405770:CDS | 40.0% |
!! | TAGGCATGGTTTGGTTGATA+AGG | - | chr3_2:41134760-41134779 | Msa0405770:CDS | 40.0% |
GTGCTTCCAATTCCTAAATC+AGG | + | chr3_2:41134821-41134840 | None:intergenic | 40.0% | |
ATTCTTAACATGTGCCCTGA+GGG | + | chr3_2:41134958-41134977 | None:intergenic | 40.0% | |
!! | CTTCTTAACTTGTGCCTTGA+GGG | - | chr3_2:41135080-41135099 | Msa0405770:intron | 40.0% |
AATGTTATCTTGTGCCCTCA+AGG | + | chr3_2:41135097-41135116 | None:intergenic | 40.0% | |
GGTAAAATGGGAAATCCGTT+GGG | + | chr3_2:41135355-41135374 | None:intergenic | 40.0% | |
CAGGTGGTTAAGGGTAAAAT+GGG | + | chr3_2:41135367-41135386 | None:intergenic | 40.0% | |
ACAGGTGGTTAAGGGTAAAA+TGG | + | chr3_2:41135368-41135387 | None:intergenic | 40.0% | |
! | TTCACTTGTGTTGACAAGCT+TGG | - | chr3_2:41135425-41135444 | Msa0405770:intron | 40.0% |
GTCCAAGTTCAATTATGCCA+AGG | - | chr3_2:41136307-41136326 | Msa0405770:intron | 40.0% | |
TCCCTTGGCATAATTGAACT+TGG | + | chr3_2:41136312-41136331 | None:intergenic | 40.0% | |
GATTTAGTTGTGTGTCCTGA+AGG | - | chr3_2:41136768-41136787 | Msa0405770:CDS | 40.0% | |
TCCTGAAGGAACAACTTGTA+GGG | - | chr3_2:41136782-41136801 | Msa0405770:CDS | 40.0% | |
! | AGTGTACCGATATTACAAGG+AGG | - | chr3_2:41137078-41137097 | Msa0405770:CDS | 40.0% |
! | GTGTACCGATATTACAAGGA+GGG | - | chr3_2:41137079-41137098 | Msa0405770:CDS | 40.0% |
! | TTCATGCTTGTTGCCTTCGA+AGG | - | chr3_2:41134401-41134420 | Msa0405770:CDS | 45.0% |
AGGACATGGAAATGACTGCA+AGG | - | chr3_2:41134540-41134559 | Msa0405770:CDS | 45.0% | |
GGACATGGAAATGACTGCAA+GGG | - | chr3_2:41134541-41134560 | Msa0405770:CDS | 45.0% | |
! | GTGCCTAAAGTTATGGTGGA+AGG | - | chr3_2:41134653-41134672 | Msa0405770:CDS | 45.0% |
GCTACAGAGTTACACACTGT+TGG | - | chr3_2:41134713-41134732 | Msa0405770:CDS | 45.0% | |
! | ACTGTTGGATGCTACTTCAC+TGG | - | chr3_2:41134728-41134747 | Msa0405770:CDS | 45.0% |
!! | TAGTGTTAACTTGTGCCCTC+AGG | - | chr3_2:41134940-41134959 | Msa0405770:CDS | 45.0% |
!! | AGTGTTAACTTGTGCCCTCA+GGG | - | chr3_2:41134941-41134960 | Msa0405770:CDS | 45.0% |
GATTCTTAACATGTGCCCTG+AGG | + | chr3_2:41134959-41134978 | None:intergenic | 45.0% | |
!! | GCTTCTTAACTTGTGCCTTG+AGG | - | chr3_2:41135079-41135098 | Msa0405770:intron | 45.0% |
GGTAAGAGGATCAGATGTAG+GGG | + | chr3_2:41135324-41135343 | None:intergenic | 45.0% | |
GGGTAAGAGGATCAGATGTA+GGG | + | chr3_2:41135325-41135344 | None:intergenic | 45.0% | |
AGGGTAAGAGGATCAGATGT+AGG | + | chr3_2:41135326-41135345 | None:intergenic | 45.0% | |
GGGTAAAATGGGAAATCCGT+TGG | + | chr3_2:41135356-41135375 | None:intergenic | 45.0% | |
! | ACTTGTGTTGACAAGCTTGG+TGG | - | chr3_2:41135428-41135447 | Msa0405770:intron | 45.0% |
!!! | GGCTTTGGATACTTTTCCCT+TGG | + | chr3_2:41136327-41136346 | None:intergenic | 45.0% |
GTCCTGAAGGAACAACTTGT+AGG | - | chr3_2:41136781-41136800 | Msa0405770:CDS | 45.0% | |
TCCCTACAAGTTGTTCCTTC+AGG | + | chr3_2:41136786-41136805 | None:intergenic | 45.0% | |
TGCTGATGAGATTGTTCCTG+TGG | - | chr3_2:41136845-41136864 | Msa0405770:CDS | 45.0% | |
! | CCAGCACAAGTGAGTTCTTT+TGG | + | chr3_2:41136993-41137012 | None:intergenic | 45.0% |
CCAAAAGAACTCACTTGTGC+TGG | - | chr3_2:41136990-41137009 | Msa0405770:CDS | 45.0% | |
AAAGAACTCACTTGTGCTGG+TGG | - | chr3_2:41136993-41137012 | Msa0405770:CDS | 45.0% | |
ATGATGTTAGCGGGGAATGA+AGG | - | chr3_2:41137110-41137129 | Msa0405770:CDS | 45.0% | |
! | ATGCTTGTTGCCTTCGAAGG+TGG | - | chr3_2:41134404-41134423 | Msa0405770:CDS | 50.0% |
TCTTACCCTCACAAGCCCAA+CGG | - | chr3_2:41135337-41135356 | Msa0405770:intron | 50.0% | |
GAAATCCGTTGGGCTTGTGA+GGG | + | chr3_2:41135345-41135364 | None:intergenic | 50.0% | |
TTCAAGTGAGGCGGTACACA+AGG | + | chr3_2:41135518-41135537 | None:intergenic | 50.0% | |
GTTGGGCTTGTGAGGGTAAG+AGG | + | chr3_2:41135338-41135357 | None:intergenic | 55.0% | |
GGAAATCCGTTGGGCTTGTG+AGG | + | chr3_2:41135346-41135365 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 41134091 | 41137224 | 41134091 | ID=Msa0405770;Name=Msa0405770 |
chr3_2 | mRNA | 41134091 | 41137224 | 41134091 | ID=Msa0405770-mRNA-1;Parent=Msa0405770;Name=Msa0405770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=58|1|1|1|1|1|2|70|534 |
chr3_2 | exon | 41134091 | 41135036 | 41134091 | ID=Msa0405770-mRNA-1:exon:7999;Parent=Msa0405770-mRNA-1 |
chr3_2 | exon | 41136438 | 41137224 | 41136438 | ID=Msa0405770-mRNA-1:exon:7998;Parent=Msa0405770-mRNA-1 |
chr3_2 | five_prime_UTR | 41137167 | 41137224 | 41137167 | ID=Msa0405770-mRNA-1:five_prime_utr;Parent=Msa0405770-mRNA-1 |
chr3_2 | CDS | 41136438 | 41137166 | 41136438 | ID=Msa0405770-mRNA-1:cds;Parent=Msa0405770-mRNA-1 |
chr3_2 | CDS | 41134161 | 41135036 | 41134161 | ID=Msa0405770-mRNA-1:cds;Parent=Msa0405770-mRNA-1 |
chr3_2 | three_prime_UTR | 41134091 | 41134160 | 41134091 | ID=Msa0405770-mRNA-1:three_prime_utr;Parent=Msa0405770-mRNA-1 |
Gene Sequence |
Protein sequence |