AlfalfaGEDB | Msa1009270

M. sativa cultivar zhongmu-4 / Msa1009270

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009270	KEH21720.1	84.921	126	17	1	1	124	763	888	3.32e-62	214

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009270	sp\|Q9SCZ4\|FERON_ARATH	32.117	137	74	3	1	124	765	895	3.51e-11	62.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009270	A0A072U795	84.921	126	17	1	1	124	763	888	1.59e-62	214

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021460	Msa1009270	0.800625	1.320277e-48	-8.615850e-47
Msa0033340	Msa1009270	0.826642	2.425048e-54	-8.615850e-47
Msa0109970	Msa1009270	0.802153	6.422216e-49	-8.615850e-47
Msa0142230	Msa1009270	0.814297	1.654850e-51	-8.615850e-47
Msa0149170	Msa1009270	0.807672	4.508077e-50	-8.615850e-47
Msa0156190	Msa1009270	0.800229	1.589835e-48	-8.615850e-47
Msa0235190	Msa1009270	0.800408	1.461687e-48	-8.615850e-47
Msa0391050	Msa1009270	0.803520	3.351461e-49	-8.615850e-47
Msa0584130	Msa1009270	0.840184	1.013058e-57	-8.615850e-47
Msa0629940	Msa1009270	0.843328	1.499616e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009270	MtrunA17_Chr7g0219721	84.921	126	17	1	1	124	763	888	3.28e-66	214
Msa1009270	MtrunA17_Chr7g0219691	84.127	126	18	1	1	124	763	888	4.15e-65	211
Msa1009270	MtrunA17_Chr7g0219671	69.767	129	32	3	1	124	763	889	1.12e-51	174
Msa1009270	MtrunA17_Chr7g0219781	71.318	129	30	3	1	124	766	892	2.26e-50	171
Msa1009270	MtrunA17_Chr7g0219761	77.465	71	16	0	1	71	18	88	7.26e-35	115
Msa1009270	MtrunA17_Chr7g0219681	82.540	63	11	0	1	63	754	816	2.49e-30	113
Msa1009270	MtrunA17_Chr7g0219581	44.800	125	60	2	1	124	189	305	1.28e-24	95.5
Msa1009270	MtrunA17_Chr7g0219571	44.355	124	53	2	1	124	765	872	2.17e-24	96.7
Msa1009270	MtrunA17_Chr4g0025961	44.000	125	61	2	1	124	758	874	2.37e-24	96.7
Msa1009270	MtrunA17_Chr7g0219651	44.355	124	53	2	1	124	1750	1857	8.38e-24	95.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1009270	AT3G51550.1	32.117	137	74	3	1	124	765	895	3.57e-12	62.4

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Find 20 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAAAGAGTGAGCAA+AGG	0.564346	7_1:-10509233	Msa1009270:CDS
AACACCGTAGCAGAAAACAA+AGG	0.728731	7_1:+10509099	None:intergenic
ACAAGTAGTAGTGATGAGTA+TGG	0.451889	7_1:-10509165	Msa1009270:CDS
ACGAATGTCGATGAGTGATG+TGG	0.712330	7_1:-10509325	Msa1009270:CDS
ATGGTGTTGAGTTGTTTGCA+TGG	0.623409	7_1:-10509360	Msa1009270:CDS
ATGTCGATGAGTGATGTGGT+TGG	0.684958	7_1:-10509321	Msa1009270:CDS
ATTAGAGTTTGCATTGCAGT+TGG	0.491251	7_1:-10509295	Msa1009270:CDS
GATGGTGGATCCGTTCATAA+AGG	0.467567	7_1:-10509421	Msa1009270:CDS
GCAACTATCTATCGTCCTTT+TGG	0.245350	7_1:+10509060	None:intergenic
GCAGTTGGAGATGAGTGAGC+AGG	0.578624	7_1:-10509280	Msa1009270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAGAGTTTGCATTGCAGT+TGG	-	chr7_1:10509193-10509212	Msa1009270:CDS	35.0%
AAAAGGAAAAGAGTGAGCAA+AGG	-	chr7_1:10509255-10509274	Msa1009270:CDS	35.0%
ACAAGTAGTAGTGATGAGTA+TGG	-	chr7_1:10509323-10509342	Msa1009270:CDS	35.0%
TAAAGGTTGTTCTTCAGTTC+TGG	+	chr7_1:10509369-10509388	None:intergenic	35.0%
GTAGCAGAAAACAAAGGTAA+AGG	+	chr7_1:10509386-10509405	None:intergenic	35.0%
AACACCGTAGCAGAAAACAA+AGG	+	chr7_1:10509392-10509411	None:intergenic	40.0%
ACGAATGTCGATGAGTGATG+TGG	-	chr7_1:10509163-10509182	Msa1009270:CDS	45.0%
ATGTCGATGAGTGATGTGGT+TGG	-	chr7_1:10509167-10509186	Msa1009270:CDS	45.0%
TGTCGATGAGTGATGTGGTT+GGG	-	chr7_1:10509168-10509187	Msa1009270:CDS	45.0%
GCAGTTGGAGATGAGTGAGC+AGG	-	chr7_1:10509208-10509227	Msa1009270:CDS	55.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	10509068	10509442	10509068	ID=Msa1009270;Name=Msa1009270
chr7_1	mRNA	10509068	10509442	10509068	ID=Msa1009270-mRNA-1;Parent=Msa1009270;Name=Msa1009270-mRNA-1;_AED=0.58;_eAED=0.58;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|124
chr7_1	exon	10509068	10509442	10509068	ID=Msa1009270-mRNA-1:exon:2861;Parent=Msa1009270-mRNA-1
chr7_1	CDS	10509068	10509442	10509068	ID=Msa1009270-mRNA-1:cds;Parent=Msa1009270-mRNA-1

Gene Sequence	>Msa1009270 ATGGTGGATCCGTTCATAAAGGATTCTATAACAAGTGAGTGTTTGAACTGTTATTGTCAAATGGTGTTGAGTTGTTTGCATGGTGATGGAAATCAACGAATGTCGATGAGTGATGTGGTTGGGACATTAGAGTTTGCATTGCAGTTGGAGATGAGTGAGCAGGATAGTAAGTTTTTTGCTACCAAGGAAAAGGAAAAGAGTGAGCAAAGGATAGAATTGTCACATTTTACTGATGATGGGAGTGAGATGGATTTCACAAGTAGTAGTGATGAGTATGGATCTCATACCACCAATTCAACCAGAACTGAAGAACAACCTTTACCTTTGTTTTCTGCTACGGTGTTTTCTGAGATTGTAAATCCAAAAGGACGATAG
Protein sequence	>Msa1009270 MVDPFIKDSITSECLNCYCQMVLSCLHGDGNQRMSMSDVVGTLEFALQLEMSEQDSKFFATKEKEKSEQRIELSHFTDDGSEMDFTSSSDEYGSHTTNSTRTEEQPLPLFSATVFSEIVNPKGR*