Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153650 | A2Q3T1 | 69.799 | 149 | 31 | 4 | 1 | 145 | 1 | 139 | 5.84e-54 | 184 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054260 | Msa0153650 | 0.802522 | 5.390994e-49 | -8.615850e-47 |
| Msa0085290 | Msa0153650 | 0.814882 | 1.228809e-51 | -8.615850e-47 |
| Msa0100090 | Msa0153650 | 0.810838 | 9.444047e-51 | -8.615850e-47 |
| Msa0153650 | Msa0212310 | 0.804040 | 2.614814e-49 | -8.615850e-47 |
| Msa0153650 | Msa0340450 | 0.804569 | 2.027999e-49 | -8.615850e-47 |
| Msa0153650 | Msa0357760 | 0.817022 | 4.090670e-52 | -8.615850e-47 |
| Msa0153650 | Msa0357790 | 0.811493 | 6.811364e-51 | -8.615850e-47 |
| Msa0153650 | Msa0357830 | 0.824484 | 7.872272e-54 | -8.615850e-47 |
| Msa0153650 | Msa0357840 | 0.817145 | 3.837251e-52 | -8.615850e-47 |
| Msa0153650 | Msa0357870 | 0.811947 | 5.425392e-51 | -8.615850e-47 |
| Msa0153650 | Msa0870060 | 0.810029 | 1.412253e-50 | -8.615850e-47 |
| Msa0153650 | Msa0909110 | 0.802266 | 6.085545e-49 | -8.615850e-47 |
| Msa0153650 | Msa0961490 | 0.821473 | 3.963847e-53 | -8.615850e-47 |
| Msa0153650 | Msa1007030 | 0.827943 | 1.183488e-54 | -8.615850e-47 |
| Msa0153650 | Msa1023120 | 0.801790 | 7.625138e-49 | -8.615850e-47 |
| Msa0153650 | Msa1107800 | 0.804791 | 1.823325e-49 | -8.615850e-47 |
| Msa0153650 | Msa1249490 | 0.802209 | 6.253881e-49 | -8.615850e-47 |
| Msa0153650 | Msa1424750 | 0.804970 | 1.672998e-49 | -8.615850e-47 |
| Msa0153650 | Msa1455490 | 0.810425 | 1.160140e-50 | -8.615850e-47 |
| Msa0153650 | Msa1458510 | 0.807077 | 6.028444e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153650 | MtrunA17_Chr2g0277921 | 50.754 | 199 | 52 | 4 | 1 | 153 | 1 | 199 | 2.38e-45 | 154 |
| Msa0153650 | MtrunA17_Chr2g0277881 | 76.471 | 51 | 12 | 0 | 95 | 145 | 6 | 56 | 1.13e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 94 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGAAGCTAAAATATTATT+TGG | 0.160158 | 1_4:-17263562 | Msa0153650:three_prime_UTR |
| TTGCGTTCCTTCAAATATTT+AGG | 0.220670 | 1_4:+17264783 | None:intergenic |
| GTGCTGAATCTTATACAATT+TGG | 0.258392 | 1_4:-17263065 | Msa0153650:three_prime_UTR |
| TTACCTCGCATCCACTTTCT+AGG | 0.262593 | 1_4:+17263935 | None:intergenic |
| GAAGTCAGAAGTTCCATTCT+TGG | 0.274528 | 1_4:+17265550 | None:intergenic |
| GGTCGTGAAACCCTTCAATT+TGG | 0.291011 | 1_4:-17263911 | Msa0153650:three_prime_UTR |
| TTGTCAACATATATGATATA+GGG | 0.295993 | 1_4:-17263651 | Msa0153650:three_prime_UTR |
| CTTCGATTTCTTTGCCTGTT+GGG | 0.308516 | 1_4:-17263495 | Msa0153650:three_prime_UTR |
| TTCCATCAGTGTCATCAAAA+AGG | 0.352228 | 1_4:-17263298 | Msa0153650:intron |
| TCCTCCATCAACTCATTATC+AGG | 0.352447 | 1_4:+17264708 | None:intergenic |
| TTCTATTACATTTAGAAAGA+TGG | 0.355498 | 1_4:-17263181 | Msa0153650:three_prime_UTR |
| TTGTGAGAAGTTACAAGAAA+AGG | 0.373421 | 1_4:+17263456 | None:intergenic |
| CAGGTCGGTGTTTGTCTTGA+AGG | 0.388545 | 1_4:-17263351 | Msa0153650:three_prime_UTR |
| GTTGTAGAGCTATCATTAAC+AGG | 0.389236 | 1_4:+17262998 | None:intergenic |
| AGGAACGGGATGAGCGTATT+CGG | 0.393305 | 1_4:-17264689 | Msa0153650:CDS |
| ATTGTCAACATATATGATAT+AGG | 0.396899 | 1_4:-17263652 | Msa0153650:three_prime_UTR |
| TCCACCTGATAATGAGTTGA+TGG | 0.399190 | 1_4:-17264712 | Msa0153650:CDS |
| TGCTTGAACACGCGTGGTAA+TGG | 0.404579 | 1_4:+17263736 | None:intergenic |
| GCTTCGATTTCTTTGCCTGT+TGG | 0.406068 | 1_4:-17263496 | Msa0153650:three_prime_UTR |
| TTGACCATCATGACTTTGTC+AGG | 0.411675 | 1_4:-17263609 | Msa0153650:three_prime_UTR |
| TCTTATACAATTTGGAAGAC+TGG | 0.413739 | 1_4:-17263057 | Msa0153650:three_prime_UTR |
| TATTCTCTTAACGACACATT+GGG | 0.414048 | 1_4:-17262869 | Msa0153650:three_prime_UTR |
| TGTGAGAAGTTACAAGAAAA+GGG | 0.416120 | 1_4:+17263457 | None:intergenic |
| AAAGAAGATAATTGCCCAAC+AGG | 0.424824 | 1_4:+17263481 | None:intergenic |
| AGAATACTTTCCTCTTAGAA+TGG | 0.427398 | 1_4:+17262886 | None:intergenic |
| GTGTTTGTCTTGAAGGGTAA+TGG | 0.449161 | 1_4:-17263344 | Msa0153650:three_prime_UTR |
| ATACTTTCTTCCATTCTAAG+AGG | 0.460094 | 1_4:-17262896 | Msa0153650:three_prime_UTR |
| TTTGTATCCTGCTGAAGACT+TGG | 0.464570 | 1_4:-17264946 | Msa0153650:CDS |
| GCTGAAGACTTGGAAAGTTA+TGG | 0.465077 | 1_4:-17264936 | Msa0153650:CDS |
| CAAGTCACCTAAATATTTGA+AGG | 0.475694 | 1_4:-17264790 | Msa0153650:CDS |
| AAACGTTATTTGATGAGAAG+TGG | 0.484954 | 1_4:+17263102 | None:intergenic |
| TTTATCTATATAGAAAGGAT+AGG | 0.494648 | 1_4:-17264639 | Msa0153650:CDS |
| CATATTCAAAACCTAGAAAG+TGG | 0.498551 | 1_4:-17263946 | Msa0153650:three_prime_UTR |
| TAACTTTCCAAGTCTTCAGC+AGG | 0.500221 | 1_4:+17264939 | None:intergenic |
| TGTAGCAGCAGCCAAATTGA+AGG | 0.506538 | 1_4:+17263900 | None:intergenic |
| ATCTTTATTGCAGTGAACTT+CGG | 0.508806 | 1_4:+17264662 | None:intergenic |
| GTTTCTAAACAACAAATACA+TGG | 0.511646 | 1_4:+17263398 | None:intergenic |
| ATTCCCACTAGGTCATGATC+AGG | 0.514405 | 1_4:+17263129 | None:intergenic |
| GACTTGTCTATAGATGATAA+TGG | 0.516324 | 1_4:-17264903 | Msa0153650:CDS |
| TACAAAATGTACATATATTG+AGG | 0.517855 | 1_4:+17262836 | None:intergenic |
| TGATCAGGTAAATAAGTGTA+TGG | 0.518501 | 1_4:+17263144 | None:intergenic |
| AGAAAGTGGATGCGAGGTAA+AGG | 0.520553 | 1_4:-17263932 | Msa0153650:three_prime_UTR |
| TGGTAATGGATTAACCTCTT+CGG | 0.523656 | 1_4:+17263750 | None:intergenic |
| CTTCGGTTCTACTTATACCA+GGG | 0.524769 | 1_4:+17263767 | None:intergenic |
| ACAAAAGAATTAGAAAAGAG+TGG | 0.524783 | 1_4:-17264860 | Msa0153650:CDS |
| ATGTTGACAATGCAACTGTC+AGG | 0.531228 | 1_4:+17263664 | None:intergenic |
| TAATGAGTTGATGGAGGAAC+GGG | 0.533217 | 1_4:-17264703 | Msa0153650:CDS |
| AATCTGAAAGCTGTTCGTCC+AGG | 0.539428 | 1_4:-17263535 | Msa0153650:three_prime_UTR |
| TTCTGGTACGATCATGAACA+AGG | 0.541676 | 1_4:+17265467 | None:intergenic |
| AAGAAAGAGACGGAATAAAA+CGG | 0.542293 | 1_4:+17263586 | None:intergenic |
| TCTTCGGTTCTACTTATACC+AGG | 0.545882 | 1_4:+17263766 | None:intergenic |
| TGATAAAGAGGATGGTGAGA+TGG | 0.548036 | 1_4:-17263711 | Msa0153650:three_prime_UTR |
| TTATCTATATAGAAAGGATA+GGG | 0.548559 | 1_4:-17264638 | Msa0153650:CDS |
| TGTTCAAGCAAATGATAAAG+AGG | 0.548865 | 1_4:-17263723 | Msa0153650:three_prime_UTR |
| GAGCTATCATTAACAGGTGT+AGG | 0.554126 | 1_4:+17263004 | None:intergenic |
| CAAGCAAATGATAAAGAGGA+TGG | 0.564196 | 1_4:-17263719 | Msa0153650:three_prime_UTR |
| ATTGAATTGCTGTTATGTGA+TGG | 0.566613 | 1_4:-17264750 | Msa0153650:CDS |
| ACAGGCAAAGAAATCGAAGC+GGG | 0.573908 | 1_4:+17263499 | None:intergenic |
| AGGTCGGTGTTTGTCTTGAA+GGG | 0.575075 | 1_4:-17263350 | Msa0153650:three_prime_UTR |
| TGTCAACATATATGATATAG+GGG | 0.581405 | 1_4:-17263650 | Msa0153650:three_prime_UTR |
| ATAATGAGTTGATGGAGGAA+CGG | 0.585381 | 1_4:-17264704 | Msa0153650:CDS |
| TGAAGACGAATTCACGCGCA+AGG | 0.589034 | 1_4:-17262973 | Msa0153650:three_prime_UTR |
| GTATTCTCTTAACGACACAT+TGG | 0.589295 | 1_4:-17262870 | Msa0153650:three_prime_UTR |
| GTAGCAGCAGCCAAATTGAA+GGG | 0.589600 | 1_4:+17263901 | None:intergenic |
| CAGTGGTGTCTTCAATGCTA+CGG | 0.591646 | 1_4:-17264603 | Msa0153650:three_prime_UTR |
| ACGGCCTGACAAAGTCATGA+TGG | 0.595104 | 1_4:+17263605 | None:intergenic |
| AGCTTCGTTCAAGAAAGAGA+CGG | 0.595481 | 1_4:+17263576 | None:intergenic |
| ATCATTTGCTTGAACACGCG+TGG | 0.595571 | 1_4:+17263730 | None:intergenic |
| GAAGACGAATTCACGCGCAA+GGG | 0.598705 | 1_4:-17262972 | Msa0153650:three_prime_UTR |
| TTACCTGATCATGACCTAGT+GGG | 0.611960 | 1_4:-17263132 | Msa0153650:three_prime_UTR |
| TTTACCTGATCATGACCTAG+TGG | 0.612558 | 1_4:-17263133 | Msa0153650:three_prime_UTR |
| TTCGGTTCTACTTATACCAG+GGG | 0.615559 | 1_4:+17263768 | None:intergenic |
| TCGGTTCTACTTATACCAGG+GGG | 0.629505 | 1_4:+17263769 | None:intergenic |
| AAACCTAGAAAGTGGATGCG+AGG | 0.638318 | 1_4:-17263938 | Msa0153650:three_prime_UTR |
| ACTATATATATAGATTGCAA+CGG | 0.638342 | 1_4:-17264562 | Msa0153650:three_prime_UTR |
| TTTCTAAACAACAAATACAT+GGG | 0.640709 | 1_4:+17263399 | None:intergenic |
| TCCATCAACTCATTATCAGG+TGG | 0.645748 | 1_4:+17264711 | None:intergenic |
| TCATGATGGTCAATGTGAGG+AGG | 0.647473 | 1_4:+17263619 | None:intergenic |
| CGGTTCTACTTATACCAGGG+GGG | 0.648134 | 1_4:+17263770 | None:intergenic |
| TCTGGTACGATCATGAACAA+GGG | 0.654357 | 1_4:+17265468 | None:intergenic |
| TGGTATAAGTAGAACCGAAG+AGG | 0.656606 | 1_4:-17263764 | Msa0153650:three_prime_UTR |
| ATTCTCTTAACGACACATTG+GGG | 0.657331 | 1_4:-17262868 | Msa0153650:three_prime_UTR |
| GGACAACAAGGAAGACTGAG+AGG | 0.657366 | 1_4:-17264536 | Msa0153650:intron |
| CTGTCAGGAACACACGTAGG+AGG | 0.659341 | 1_4:+17263679 | None:intergenic |
| AAGTCATGATGGTCAATGTG+AGG | 0.666234 | 1_4:+17263616 | None:intergenic |
| ACCTGATAATGAGTTGATGG+AGG | 0.668442 | 1_4:-17264709 | Msa0153650:CDS |
| AACAGGCAAAGAAATCGAAG+CGG | 0.670220 | 1_4:+17263498 | None:intergenic |
| GAAGTGGCTTGATTCCCACT+AGG | 0.671132 | 1_4:+17263118 | None:intergenic |
| TTGCAACGGAGAGGACAACA+AGG | 0.675669 | 1_4:-17264548 | Msa0153650:three_prime_UTR |
| ATATATAGATTGCAACGGAG+AGG | 0.677278 | 1_4:-17264557 | Msa0153650:three_prime_UTR |
| CAACTGTCAGGAACACACGT+AGG | 0.730449 | 1_4:+17263676 | None:intergenic |
| CTGCTGCTACAACTATGCAG+TGG | 0.741105 | 1_4:-17263888 | Msa0153650:intron |
| CATGAACAAGGGTTTCACAG+TGG | 0.751922 | 1_4:+17265479 | None:intergenic |
| TAGGGTCTTGAACTTCACAG+TGG | 0.787171 | 1_4:-17264620 | Msa0153650:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTATTATTTGAGATTAA+GGG | - | chr1_4:17263066-17263085 | Msa0153650:three_prime_UTR | 15.0% |
| !!! | AAGATTTTATCTATATAGAA+AGG | - | chr1_4:17263764-17263783 | Msa0153650:three_prime_UTR | 15.0% |
| !!! | TATACTTTTTTGTTTTTCAT+TGG | - | chr1_4:17263972-17263991 | Msa0153650:intron | 15.0% |
| !!! | GTATTACTTACTTTTATGAA+GGG | + | chr1_4:17262970-17262989 | None:intergenic | 20.0% |
| !!! | AGTATTACTTACTTTTATGA+AGG | + | chr1_4:17262971-17262990 | None:intergenic | 20.0% |
| !! | CAAATAATAATGAAAAAGAG+AGG | + | chr1_4:17262999-17263018 | None:intergenic | 20.0% |
| !!! | CTCTTTATTATTTGAGATTA+AGG | - | chr1_4:17263065-17263084 | Msa0153650:three_prime_UTR | 20.0% |
| !!! | TAGAAGTTTTATCTAATTTG+TGG | + | chr1_4:17263217-17263236 | None:intergenic | 20.0% |
| !! | AGTAAAAAGGTTAAAGAAAA+AGG | + | chr1_4:17263305-17263324 | None:intergenic | 20.0% |
| !! | TTTGTTAGTACAAAGTAAAA+AGG | + | chr1_4:17263318-17263337 | None:intergenic | 20.0% |
| !!! | ATGTTTCTAATGTTTATTGA+CGG | + | chr1_4:17263354-17263373 | None:intergenic | 20.0% |
| !!! | TGTTTTTGTATAAAGTTACT+TGG | + | chr1_4:17263580-17263599 | None:intergenic | 20.0% |
| !! | TTTATCTATATAGAAAGGAT+AGG | - | chr1_4:17263769-17263788 | Msa0153650:three_prime_UTR | 20.0% |
| !! | TTATCTATATAGAAAGGATA+GGG | - | chr1_4:17263770-17263789 | Msa0153650:three_prime_UTR | 20.0% |
| !! | ACTATATATATAGATTGCAA+CGG | - | chr1_4:17263846-17263865 | Msa0153650:intron | 20.0% |
| !! | TTGAAGAATAAAGAGAAAAT+AGG | + | chr1_4:17263912-17263931 | None:intergenic | 20.0% |
| !! | GAAGTTAACAAATAAATCAA+AGG | + | chr1_4:17263948-17263967 | None:intergenic | 20.0% |
| !!! | TAAAAAAAGTGTGCTAATTT+TGG | + | chr1_4:17264074-17264093 | None:intergenic | 20.0% |
| !!! | AAAATTAGCACACTTTTTTT+AGG | - | chr1_4:17264073-17264092 | Msa0153650:intron | 20.0% |
| !!! | TTTTTTTAGGATACAAAATG+TGG | - | chr1_4:17264086-17264105 | Msa0153650:intron | 20.0% |
| !! | TTTACATTGAATCAAAATCT+TGG | + | chr1_4:17264141-17264160 | None:intergenic | 20.0% |
| !! | TCACAAAAGAAAGAAAAAAA+TGG | + | chr1_4:17264204-17264223 | None:intergenic | 20.0% |
| !!! | TTATTTTTGTAAAATGATGC+AGG | - | chr1_4:17264602-17264621 | Msa0153650:three_prime_UTR | 20.0% |
| !! | ATTGTCAACATATATGATAT+AGG | - | chr1_4:17264756-17264775 | Msa0153650:CDS | 20.0% |
| !! | TTGTCAACATATATGATATA+GGG | - | chr1_4:17264757-17264776 | Msa0153650:CDS | 20.0% |
| !! | AACGAAGCTAAAATATTATT+TGG | - | chr1_4:17264846-17264865 | Msa0153650:CDS | 20.0% |
| !! | TACATGGGAAAAAAAAATAA+AGG | + | chr1_4:17264997-17265016 | None:intergenic | 20.0% |
| !! | TTTCTAAACAACAAATACAT+GGG | + | chr1_4:17265012-17265031 | None:intergenic | 20.0% |
| !! | TCAAGTGAATATAAAATTTG+TGG | + | chr1_4:17265147-17265166 | None:intergenic | 20.0% |
| !!! | AATAGTTATTCTTTTGTTGT+AGG | - | chr1_4:17265202-17265221 | Msa0153650:intron | 20.0% |
| !! | TTCTATTACATTTAGAAAGA+TGG | - | chr1_4:17265227-17265246 | Msa0153650:intron | 20.0% |
| !! | TACAAAATGTACATATATTG+AGG | + | chr1_4:17265575-17265594 | None:intergenic | 20.0% |
| !!! | CTTTTTCATCATCTCAATAT+AGG | - | chr1_4:17263424-17263443 | Msa0153650:three_prime_UTR | 25.0% |
| ! | ACAAAAGAATTAGAAAAGAG+TGG | - | chr1_4:17263548-17263567 | Msa0153650:three_prime_UTR | 25.0% |
| ! | ATAACAACAATATACTGAGA+AGG | + | chr1_4:17264029-17264048 | None:intergenic | 25.0% |
| !!! | TTTTTAGTATGAATCGAACT+TGG | + | chr1_4:17264173-17264192 | None:intergenic | 25.0% |
| ! | ACTTTGCAATAGTTTCAAAT+TGG | - | chr1_4:17264223-17264242 | Msa0153650:intron | 25.0% |
| ! | TTTGTAATTCTTACATCTAC+TGG | - | chr1_4:17264417-17264436 | Msa0153650:intron | 25.0% |
| ! | GTTCTATCTGTGAATAATAA+AGG | + | chr1_4:17264443-17264462 | None:intergenic | 25.0% |
| ! | TGTCAACATATATGATATAG+GGG | - | chr1_4:17264758-17264777 | Msa0153650:CDS | 25.0% |
| ! | GTTTCTAAACAACAAATACA+TGG | + | chr1_4:17265013-17265032 | None:intergenic | 25.0% |
| ! | GCAATACAATAAAACATGAT+AGG | + | chr1_4:17265174-17265193 | None:intergenic | 25.0% |
| !! | CTATTTTGTTTCTCCAAGAA+TGG | - | chr1_4:17262845-17262864 | Msa0153650:three_prime_UTR | 30.0% |
| ! | GACTAAAGAAGAGATTTTAG+AGG | - | chr1_4:17262884-17262903 | Msa0153650:three_prime_UTR | 30.0% |
| !!! | CTTTCAGGTTTTCCTTATTT+CGG | - | chr1_4:17263089-17263108 | Msa0153650:three_prime_UTR | 30.0% |
| TTTCTAATGTTTATTGACGG+TGG | + | chr1_4:17263351-17263370 | None:intergenic | 30.0% | |
| GACTTGTCTATAGATGATAA+TGG | - | chr1_4:17263505-17263524 | Msa0153650:three_prime_UTR | 30.0% | |
| CAAGTCACCTAAATATTTGA+AGG | - | chr1_4:17263618-17263637 | Msa0153650:three_prime_UTR | 30.0% | |
| TTGCGTTCCTTCAAATATTT+AGG | + | chr1_4:17263628-17263647 | None:intergenic | 30.0% | |
| ! | ATTGAATTGCTGTTATGTGA+TGG | - | chr1_4:17263658-17263677 | Msa0153650:three_prime_UTR | 30.0% |
| ATCTTTATTGCAGTGAACTT+CGG | + | chr1_4:17263749-17263768 | None:intergenic | 30.0% | |
| TGTTGTTATCATGCTAAACT+CGG | - | chr1_4:17264040-17264059 | Msa0153650:intron | 30.0% | |
| ! | AGTTTCAAATTGGTTGATTC+TGG | - | chr1_4:17264233-17264252 | Msa0153650:intron | 30.0% |
| CATATTCAAAACCTAGAAAG+TGG | - | chr1_4:17264462-17264481 | Msa0153650:intron | 30.0% | |
| TATGCAGTGGTAAGTAATTA+AGG | - | chr1_4:17264533-17264552 | Msa0153650:intron | 30.0% | |
| AAAATGATGCAGGACAAAAA+TGG | - | chr1_4:17264612-17264631 | Msa0153650:three_prime_UTR | 30.0% | |
| TGTTCAAGCAAATGATAAAG+AGG | - | chr1_4:17264685-17264704 | Msa0153650:CDS | 30.0% | |
| AAGAAAGAGACGGAATAAAA+CGG | + | chr1_4:17264825-17264844 | None:intergenic | 30.0% | |
| TGTGAGAAGTTACAAGAAAA+GGG | + | chr1_4:17264954-17264973 | None:intergenic | 30.0% | |
| TTGTGAGAAGTTACAAGAAA+AGG | + | chr1_4:17264955-17264974 | None:intergenic | 30.0% | |
| TGATCAGGTAAATAAGTGTA+TGG | + | chr1_4:17265267-17265286 | None:intergenic | 30.0% | |
| AAACGTTATTTGATGAGAAG+TGG | + | chr1_4:17265309-17265328 | None:intergenic | 30.0% | |
| !! | CATCAAATAACGTTTTAACG+AGG | - | chr1_4:17265314-17265333 | Msa0153650:intron | 30.0% |
| GTGCTGAATCTTATACAATT+TGG | - | chr1_4:17265343-17265362 | Msa0153650:intron | 30.0% | |
| TCTTATACAATTTGGAAGAC+TGG | - | chr1_4:17265351-17265370 | Msa0153650:intron | 30.0% | |
| ATACTTTCTTCCATTCTAAG+AGG | - | chr1_4:17265512-17265531 | Msa0153650:CDS | 30.0% | |
| AGAATACTTTCCTCTTAGAA+TGG | + | chr1_4:17265525-17265544 | None:intergenic | 30.0% | |
| TATTCTCTTAACGACACATT+GGG | - | chr1_4:17265539-17265558 | Msa0153650:CDS | 30.0% | |
| !! | ATTTTAGAGGTTCTCTCTCA+TGG | - | chr1_4:17262897-17262916 | Msa0153650:three_prime_UTR | 35.0% |
| ! | ACTTTTATGAAGGGTTCTTC+TGG | + | chr1_4:17262961-17262980 | None:intergenic | 35.0% |
| ! | ATTTGAGATTAAGGGCTTTC+AGG | - | chr1_4:17263074-17263093 | Msa0153650:three_prime_UTR | 35.0% |
| AGTTAGCATGATCCGAAATA+AGG | + | chr1_4:17263104-17263123 | None:intergenic | 35.0% | |
| ! | TTCGGATCATGCTAACTTTT+AGG | - | chr1_4:17263107-17263126 | Msa0153650:three_prime_UTR | 35.0% |
| ! | TCGGATCATGCTAACTTTTA+GGG | - | chr1_4:17263108-17263127 | Msa0153650:three_prime_UTR | 35.0% |
| !! | GTTTCTTAACTTGTGCACTT+AGG | - | chr1_4:17263243-17263262 | Msa0153650:intron | 35.0% |
| ! | GGATTTAACTTATGCTCTCA+AGG | - | chr1_4:17263264-17263283 | Msa0153650:intron | 35.0% |
| !! | ATAATGAGTTGATGGAGGAA+CGG | - | chr1_4:17263704-17263723 | Msa0153650:three_prime_UTR | 35.0% |
| ATATATAGATTGCAACGGAG+AGG | - | chr1_4:17263851-17263870 | Msa0153650:intron | 35.0% | |
| TTTGATTCAATGTAAACCCG+TGG | - | chr1_4:17264145-17264164 | Msa0153650:intron | 35.0% | |
| ATATACACTAGATCCTCTCT+AGG | - | chr1_4:17264285-17264304 | Msa0153650:intron | 35.0% | |
| GGAATGTTCTGCACAATAAT+TGG | - | chr1_4:17264306-17264325 | Msa0153650:intron | 35.0% | |
| !! | TGGTAATGGATTAACCTCTT+CGG | + | chr1_4:17264661-17264680 | None:intergenic | 35.0% |
| CAAGCAAATGATAAAGAGGA+TGG | - | chr1_4:17264689-17264708 | Msa0153650:CDS | 35.0% | |
| AAAGAAGATAATTGCCCAAC+AGG | + | chr1_4:17264930-17264949 | None:intergenic | 35.0% | |
| !!! | AGTGCTTATTTTGATCATGC+AGG | - | chr1_4:17265038-17265057 | Msa0153650:intron | 35.0% |
| !!! | CTTATTTTGATCATGCAGGT+CGG | - | chr1_4:17265042-17265061 | Msa0153650:intron | 35.0% |
| TTCCATCAGTGTCATCAAAA+AGG | - | chr1_4:17265110-17265129 | Msa0153650:intron | 35.0% | |
| !! | TACCTTTTTGATGACACTGA+TGG | + | chr1_4:17265115-17265134 | None:intergenic | 35.0% |
| GTTGTAGAGCTATCATTAAC+AGG | + | chr1_4:17265413-17265432 | None:intergenic | 35.0% | |
| GTATTCTCTTAACGACACAT+TGG | - | chr1_4:17265538-17265557 | Msa0153650:CDS | 35.0% | |
| ATTCTCTTAACGACACATTG+GGG | - | chr1_4:17265540-17265559 | Msa0153650:CDS | 35.0% | |
| GAAGTCAGAAGTTCCATTCT+TGG | + | chr1_4:17262861-17262880 | None:intergenic | 40.0% | |
| TCTGGTACGATCATGAACAA+GGG | + | chr1_4:17262943-17262962 | None:intergenic | 40.0% | |
| TTCTGGTACGATCATGAACA+AGG | + | chr1_4:17262944-17262963 | None:intergenic | 40.0% | |
| TTTGTATCCTGCTGAAGACT+TGG | - | chr1_4:17263462-17263481 | Msa0153650:three_prime_UTR | 40.0% | |
| TAACTTTCCAAGTCTTCAGC+AGG | + | chr1_4:17263472-17263491 | None:intergenic | 40.0% | |
| GCTGAAGACTTGGAAAGTTA+TGG | - | chr1_4:17263472-17263491 | Msa0153650:three_prime_UTR | 40.0% | |
| ! | TCCACCTGATAATGAGTTGA+TGG | - | chr1_4:17263696-17263715 | Msa0153650:three_prime_UTR | 40.0% |
| TCCATCAACTCATTATCAGG+TGG | + | chr1_4:17263700-17263719 | None:intergenic | 40.0% | |
| !! | ACCTGATAATGAGTTGATGG+AGG | - | chr1_4:17263699-17263718 | Msa0153650:three_prime_UTR | 40.0% |
| TCCTCCATCAACTCATTATC+AGG | + | chr1_4:17263703-17263722 | None:intergenic | 40.0% | |
| !! | TAATGAGTTGATGGAGGAAC+GGG | - | chr1_4:17263705-17263724 | Msa0153650:three_prime_UTR | 40.0% |
| ATGAATCGAACTTGGTACCA+CGG | + | chr1_4:17264165-17264184 | None:intergenic | 40.0% | |
| TCCTCTCAATCACTAGTACA+TGG | - | chr1_4:17264388-17264407 | Msa0153650:intron | 40.0% | |
| TCCATGTACTAGTGATTGAG+AGG | + | chr1_4:17264392-17264411 | None:intergenic | 40.0% | |
| CTCAATCACTAGTACATGGA+AGG | - | chr1_4:17264392-17264411 | Msa0153650:intron | 40.0% | |
| TTCGGTTCTACTTATACCAG+GGG | + | chr1_4:17264643-17264662 | None:intergenic | 40.0% | |
| CTTCGGTTCTACTTATACCA+GGG | + | chr1_4:17264644-17264663 | None:intergenic | 40.0% | |
| TCTTCGGTTCTACTTATACC+AGG | + | chr1_4:17264645-17264664 | None:intergenic | 40.0% | |
| TGGTATAAGTAGAACCGAAG+AGG | - | chr1_4:17264644-17264663 | Msa0153650:CDS | 40.0% | |
| TGATAAAGAGGATGGTGAGA+TGG | - | chr1_4:17264697-17264716 | Msa0153650:CDS | 40.0% | |
| ATGTTGACAATGCAACTGTC+AGG | + | chr1_4:17264747-17264766 | None:intergenic | 40.0% | |
| AAGTCATGATGGTCAATGTG+AGG | + | chr1_4:17264795-17264814 | None:intergenic | 40.0% | |
| TTGACCATCATGACTTTGTC+AGG | - | chr1_4:17264799-17264818 | Msa0153650:CDS | 40.0% | |
| AGCTTCGTTCAAGAAAGAGA+CGG | + | chr1_4:17264835-17264854 | None:intergenic | 40.0% | |
| AACAGGCAAAGAAATCGAAG+CGG | + | chr1_4:17264913-17264932 | None:intergenic | 40.0% | |
| CTTCGATTTCTTTGCCTGTT+GGG | - | chr1_4:17264913-17264932 | Msa0153650:CDS | 40.0% | |
| GTGTTTGTCTTGAAGGGTAA+TGG | - | chr1_4:17265064-17265083 | Msa0153650:intron | 40.0% | |
| TTTACCTGATCATGACCTAG+TGG | - | chr1_4:17265275-17265294 | Msa0153650:intron | 40.0% | |
| TTACCTGATCATGACCTAGT+GGG | - | chr1_4:17265276-17265295 | Msa0153650:intron | 40.0% | |
| GAGCTATCATTAACAGGTGT+AGG | + | chr1_4:17265407-17265426 | None:intergenic | 40.0% | |
| CATGAACAAGGGTTTCACAG+TGG | + | chr1_4:17262932-17262951 | None:intergenic | 45.0% | |
| TAGGGTCTTGAACTTCACAG+TGG | - | chr1_4:17263788-17263807 | Msa0153650:intron | 45.0% | |
| CAGTGGTGTCTTCAATGCTA+CGG | - | chr1_4:17263805-17263824 | Msa0153650:intron | 45.0% | |
| TGAATCGAACTTGGTACCAC+GGG | + | chr1_4:17264164-17264183 | None:intergenic | 45.0% | |
| TGTGCAGAACATTCCTAGAG+AGG | + | chr1_4:17264301-17264320 | None:intergenic | 45.0% | |
| AAACCTAGAAAGTGGATGCG+AGG | - | chr1_4:17264470-17264489 | Msa0153650:intron | 45.0% | |
| TTACCTCGCATCCACTTTCT+AGG | + | chr1_4:17264476-17264495 | None:intergenic | 45.0% | |
| AGAAAGTGGATGCGAGGTAA+AGG | - | chr1_4:17264476-17264495 | Msa0153650:intron | 45.0% | |
| GGTCGTGAAACCCTTCAATT+TGG | - | chr1_4:17264497-17264516 | Msa0153650:intron | 45.0% | |
| GTAGCAGCAGCCAAATTGAA+GGG | + | chr1_4:17264510-17264529 | None:intergenic | 45.0% | |
| TGTAGCAGCAGCCAAATTGA+AGG | + | chr1_4:17264511-17264530 | None:intergenic | 45.0% | |
| TCGGTTCTACTTATACCAGG+GGG | + | chr1_4:17264642-17264661 | None:intergenic | 45.0% | |
| ATCATTTGCTTGAACACGCG+TGG | + | chr1_4:17264681-17264700 | None:intergenic | 45.0% | |
| TCATGATGGTCAATGTGAGG+AGG | + | chr1_4:17264792-17264811 | None:intergenic | 45.0% | |
| AATCTGAAAGCTGTTCGTCC+AGG | - | chr1_4:17264873-17264892 | Msa0153650:CDS | 45.0% | |
| !!! | GTTCGTCCAGGAGAGTTTTT+TGG | - | chr1_4:17264885-17264904 | Msa0153650:CDS | 45.0% |
| ACAGGCAAAGAAATCGAAGC+GGG | + | chr1_4:17264912-17264931 | None:intergenic | 45.0% | |
| GCTTCGATTTCTTTGCCTGT+TGG | - | chr1_4:17264912-17264931 | Msa0153650:CDS | 45.0% | |
| ! | AGGTCGGTGTTTGTCTTGAA+GGG | - | chr1_4:17265058-17265077 | Msa0153650:intron | 45.0% |
| ATTCCCACTAGGTCATGATC+AGG | + | chr1_4:17265282-17265301 | None:intergenic | 45.0% | |
| AGGAACGGGATGAGCGTATT+CGG | - | chr1_4:17263719-17263738 | Msa0153650:three_prime_UTR | 50.0% | |
| TTGCAACGGAGAGGACAACA+AGG | - | chr1_4:17263860-17263879 | Msa0153650:intron | 50.0% | |
| GGACAACAAGGAAGACTGAG+AGG | - | chr1_4:17263872-17263891 | Msa0153650:intron | 50.0% | |
| CTGCTGCTACAACTATGCAG+TGG | - | chr1_4:17264520-17264539 | Msa0153650:intron | 50.0% | |
| GACAAAAATGGTAACCCCCC+TGG | - | chr1_4:17264624-17264643 | Msa0153650:exon | 50.0% | |
| CGGTTCTACTTATACCAGGG+GGG | + | chr1_4:17264641-17264660 | None:intergenic | 50.0% | |
| TGCTTGAACACGCGTGGTAA+TGG | + | chr1_4:17264675-17264694 | None:intergenic | 50.0% | |
| CAACTGTCAGGAACACACGT+AGG | + | chr1_4:17264735-17264754 | None:intergenic | 50.0% | |
| ACGGCCTGACAAAGTCATGA+TGG | + | chr1_4:17264806-17264825 | None:intergenic | 50.0% | |
| ! | CAGGTCGGTGTTTGTCTTGA+AGG | - | chr1_4:17265057-17265076 | Msa0153650:intron | 50.0% |
| GAAGTGGCTTGATTCCCACT+AGG | + | chr1_4:17265293-17265312 | None:intergenic | 50.0% | |
| TGAAGACGAATTCACGCGCA+AGG | - | chr1_4:17265435-17265454 | Msa0153650:intron | 50.0% | |
| GAAGACGAATTCACGCGCAA+GGG | - | chr1_4:17265436-17265455 | Msa0153650:intron | 50.0% | |
| CTGTCAGGAACACACGTAGG+AGG | + | chr1_4:17264732-17264751 | None:intergenic | 55.0% | |
| GCGGGACCAAAAAACTCTCC+TGG | + | chr1_4:17264894-17264913 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 17262831 | 17265599 | 17262831 | ID=Msa0153650;Name=Msa0153650 |
| chr1_4 | mRNA | 17262831 | 17265599 | 17262831 | ID=Msa0153650-mRNA-1;Parent=Msa0153650;Name=Msa0153650-mRNA-1;_AED=0.03;_eAED=0.03;_QI=33|1|1|1|1|0.6|5|1065|155 |
| chr1_4 | exon | 17262831 | 17263206 | 17262831 | ID=Msa0153650-mRNA-1:exon:6552;Parent=Msa0153650-mRNA-1 |
| chr1_4 | exon | 17263299 | 17263806 | 17263299 | ID=Msa0153650-mRNA-1:exon:6551;Parent=Msa0153650-mRNA-1 |
| chr1_4 | exon | 17263889 | 17263974 | 17263889 | ID=Msa0153650-mRNA-1:exon:6550;Parent=Msa0153650-mRNA-1 |
| chr1_4 | exon | 17264537 | 17264984 | 17264537 | ID=Msa0153650-mRNA-1:exon:6549;Parent=Msa0153650-mRNA-1 |
| chr1_4 | exon | 17265452 | 17265599 | 17265452 | ID=Msa0153650-mRNA-1:exon:6548;Parent=Msa0153650-mRNA-1 |
| chr1_4 | five_prime_UTR | 17265567 | 17265599 | 17265567 | ID=Msa0153650-mRNA-1:five_prime_utr;Parent=Msa0153650-mRNA-1 |
| chr1_4 | CDS | 17265452 | 17265566 | 17265452 | ID=Msa0153650-mRNA-1:cds;Parent=Msa0153650-mRNA-1 |
| chr1_4 | CDS | 17264632 | 17264984 | 17264632 | ID=Msa0153650-mRNA-1:cds;Parent=Msa0153650-mRNA-1 |
| chr1_4 | three_prime_UTR | 17264537 | 17264631 | 17264537 | ID=Msa0153650-mRNA-1:three_prime_utr;Parent=Msa0153650-mRNA-1 |
| chr1_4 | three_prime_UTR | 17263889 | 17263974 | 17263889 | ID=Msa0153650-mRNA-1:three_prime_utr;Parent=Msa0153650-mRNA-1 |
| chr1_4 | three_prime_UTR | 17263299 | 17263806 | 17263299 | ID=Msa0153650-mRNA-1:three_prime_utr;Parent=Msa0153650-mRNA-1 |
| chr1_4 | three_prime_UTR | 17262831 | 17263206 | 17262831 | ID=Msa0153650-mRNA-1:three_prime_utr;Parent=Msa0153650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
