AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0909110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909110 MtrunA17_Chr7g0227381 92.553 188 10 1 1 184 1 188 1.73e-112 326
Msa0909110 MtrunA17_Chr8g0364491 81.183 186 33 1 1 184 1 186 7.67e-96 283
Msa0909110 MtrunA17_Chr7g0227361 61.957 184 51 3 1 184 78 242 3.18e-65 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909110 AT2G30280.1 49.419 172 80 2 4 173 8 174 9.30e-48 160

Find 86 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGTGAGTTTGGTGGTTT+TGG 0.211167 6_2:+10270886 Msa0909110:CDS
ACTTGTTCTAATGTTGTTTA+TGG 0.220273 6_2:+10270910 Msa0909110:CDS
TGATTATCCGGACGAGATTT+CGG 0.287103 6_2:+10272732 Msa0909110:three_prime_UTR
AACAATAACACTGTTGTTGA+TGG 0.304764 6_2:+10270835 Msa0909110:CDS
TTGCAACAACAAACCTTGTT+TGG 0.308019 6_2:-10272106 None:intergenic
TGCAGGAATTTATGAGTAAT+AGG 0.312933 6_2:-10273006 None:intergenic
GTTGTTGATGGTTATGGTTT+TGG 0.319496 6_2:+10270847 Msa0909110:CDS
ATTGATAACAAAAGTGAGTT+TGG 0.320406 6_2:+10270877 Msa0909110:CDS
AATAAGCTTAAGGACAAGTT+AGG 0.323311 6_2:-10266461 None:intergenic
AATTCATAACAAGAAGGTTT+TGG 0.339164 6_2:+10268181 Msa0909110:CDS
TCAAAATCCTCATCATATAA+TGG 0.354098 6_2:-10272892 None:intergenic
AAACATCGTCGGCTAAATAC+TGG 0.356186 6_2:-10273048 None:intergenic
TTACTCCGCAAAATCCTGTT+AGG 0.359531 6_2:-10273118 None:intergenic
AACACTGTTGTTGATGGTTA+TGG 0.361383 6_2:+10270841 Msa0909110:CDS
GAAGAACTTTCCGCCATGTT+AGG 0.362730 6_2:-10266504 None:intergenic
CACCGAAGCCTGTTGTCGTT+AGG 0.369522 6_2:+10266538 Msa0909110:CDS
CGTTTAACCCTAACGACAAC+AGG 0.384660 6_2:-10266546 None:intergenic
GTAATTAGACTCGAATCTAA+TGG 0.387853 6_2:+10273079 Msa0909110:three_prime_UTR
ATCATTCATTGGATTGTCTT+CGG 0.399037 6_2:-10272713 None:intergenic
AGATATTGTGCAATCATTTG+TGG 0.399760 6_2:+10268244 Msa0909110:CDS
TTCAATCTCTGCAGCAGCAT+TGG 0.417219 6_2:-10272064 None:intergenic
ATTCACAAAACCCACCTAAC+AGG 0.421210 6_2:+10273104 Msa0909110:three_prime_UTR
TCAATCTCTGCAGCAGCATT+GGG 0.421354 6_2:-10272063 None:intergenic
ACCGAAGCCTGTTGTCGTTA+GGG 0.421898 6_2:+10266539 Msa0909110:CDS
GTTCTAATGTTGTTTATGGT+TGG 0.432144 6_2:+10270914 Msa0909110:CDS
TAATTAGACTCGAATCTAAT+GGG 0.438733 6_2:+10273080 Msa0909110:three_prime_UTR
CAATCCAATGAATGATTATC+CGG 0.444230 6_2:+10272720 Msa0909110:three_prime_UTR
ACCCTAACGACAACAGGCTT+CGG 0.445057 6_2:-10266540 None:intergenic
GGGTGCAAATAATAAGCTTA+AGG 0.446358 6_2:-10266471 None:intergenic
TACTCACAGTGCATAAGAAT+GGG 0.465170 6_2:-10272469 None:intergenic
CACGAACAATGTCATAGAAC+TGG 0.474581 6_2:-10270280 None:intergenic
GGAATAACCTCTCTTAGTAA+AGG 0.474983 6_2:-10272042 None:intergenic
ATCATCCTCACTTGTTGTTG+AGG 0.477779 6_2:-10270799 None:intergenic
CAATGGAGGGCGTAATATCC+TGG 0.478324 6_2:-10273149 None:intergenic
GAATAACCTCTCTTAGTAAA+GGG 0.479090 6_2:-10272041 None:intergenic
TCAGAAGCACTTCTAGAAGC+AGG 0.480631 6_2:-10268500 None:intergenic
TCGTCCGGATAATCATTCAT+TGG 0.491166 6_2:-10272724 None:intergenic
CAGAGTTCAAGTTGAAGAAG+AGG 0.491320 6_2:+10272558 Msa0909110:intron
GAGTAATAGGATGGCTTCAC+CGG 0.493547 6_2:-10272993 None:intergenic
ATACTCACAGTGCATAAGAA+TGG 0.494786 6_2:-10272470 None:intergenic
TATGAAACTGATGACTCAAA+TGG 0.496897 6_2:+10272610 Msa0909110:three_prime_UTR
TCATCTTCCGAAATCTCGTC+CGG 0.506670 6_2:-10272739 None:intergenic
GGCGGAAAGTTCTTCGTCTC+CGG 0.509257 6_2:+10266512 Msa0909110:CDS
GATAACAAAAGTGAGTTTGG+TGG 0.511909 6_2:+10270880 Msa0909110:CDS
ACAACAGGCTTCGGTGGAGC+CGG 0.517007 6_2:-10266531 None:intergenic
CTCCGCAAAATCCTGTTAGG+TGG 0.522279 6_2:-10273115 None:intergenic
AGTTGAAATTCATAACAAGA+AGG 0.523129 6_2:+10268175 Msa0909110:intron
AAGCTTGGAGGTGGTCATAC+CGG 0.525415 6_2:+10272974 Msa0909110:three_prime_UTR
AGGATGTAGGTAATGAAGCT+TGG 0.525748 6_2:+10272959 Msa0909110:three_prime_UTR
GAGATTTCGGAAGATGAAGA+AGG 0.532402 6_2:+10272745 Msa0909110:three_prime_UTR
GATTATGAAGGTCAAGGTGC+AGG 0.541394 6_2:+10272916 Msa0909110:three_prime_UTR
ATGCAGAGATATGTCCTTGG+AGG 0.542700 6_2:+10271993 Msa0909110:intron
TTTGATGATTATGAAGGTCA+AGG 0.543637 6_2:+10272910 Msa0909110:three_prime_UTR
TCCGCAAAATCCTGTTAGGT+GGG 0.543753 6_2:-10273114 None:intergenic
TTACCTCCCTTTACTAAGAG+AGG 0.547553 6_2:+10272035 Msa0909110:three_prime_UTR
GGAATTTATGAGTAATAGGA+TGG 0.547973 6_2:-10273002 None:intergenic
GTCAGATGATGACGAGGATG+TGG 0.561072 6_2:+10272819 Msa0909110:three_prime_UTR
GGATGAGACGATCGTTGAAG+AGG 0.564991 6_2:+10272440 Msa0909110:three_prime_UTR
AGCATCGAGTGGAGAATGAG+AGG 0.565331 6_2:-10266574 None:intergenic
TGAATCTAAGTCAAAAGTTG+AGG 0.570958 6_2:+10268520 Msa0909110:CDS
TTTCATAATCTGAATTGTCA+AGG 0.573077 6_2:-10272594 None:intergenic
TAGGTAATGAAGCTTGGAGG+TGG 0.580122 6_2:+10272965 Msa0909110:three_prime_UTR
CAAAAGTCTTTGATCCTCCA+AGG 0.586157 6_2:-10272007 None:intergenic
CTAAGTCAAAAGTTGAGGAA+AGG 0.586596 6_2:+10268525 Msa0909110:CDS
ATGTAGGTAATGAAGCTTGG+AGG 0.590833 6_2:+10272962 Msa0909110:three_prime_UTR
AGTTTCCTCAACAACAAGTG+AGG 0.602696 6_2:+10270794 Msa0909110:intron
TTATGACCTCTACACTGTAA+CGG 0.604149 6_2:+10272419 Msa0909110:three_prime_UTR
TACACAATGCTAAACATCGT+CGG 0.604969 6_2:-10273059 None:intergenic
ATAAGTGCTCACTCCAAACA+AGG 0.605515 6_2:+10272093 Msa0909110:three_prime_UTR
CTAACGACAACAGGCTTCGG+TGG 0.611603 6_2:-10266537 None:intergenic
ATATCTATATAATCTAACCT+AGG 0.616763 6_2:-10273246 None:intergenic
TAAAGGTGTTACTTCTGATG+TGG 0.617831 6_2:+10272864 Msa0909110:three_prime_UTR
GAAGAGCAGAAAAGTAAACA+AGG 0.626979 6_2:+10270223 Msa0909110:CDS
GCATCGAGTGGAGAATGAGA+GGG 0.632883 6_2:-10266573 None:intergenic
TAACCTCTCTTAGTAAAGGG+AGG 0.634661 6_2:-10272038 None:intergenic
TCTCATCCGTTACAGTGTAG+AGG 0.640074 6_2:-10272425 None:intergenic
AATGATGATGACGAGGATGT+AGG 0.648994 6_2:+10272946 Msa0909110:three_prime_UTR
TTAATGCAGAGATATGTCCT+TGG 0.657090 6_2:+10271990 Msa0909110:intron
AGAGCAGAAAAGTAAACAAG+GGG 0.667224 6_2:+10270225 Msa0909110:CDS
AGAATTGTCAGATGATGACG+AGG 0.671720 6_2:+10272813 Msa0909110:three_prime_UTR
CGATGACAATGATGATGACG+AGG 0.673713 6_2:+10272939 Msa0909110:three_prime_UTR
AAGAGCAGAAAAGTAAACAA+GGG 0.682340 6_2:+10270224 Msa0909110:CDS
GGATGATCCATTATATGATG+AGG 0.683635 6_2:+10272885 Msa0909110:three_prime_UTR
ATGTTACAGAAAGCATCGAG+TGG 0.688180 6_2:-10266585 None:intergenic
GGAGACAATAAGCAGCTCTG+AGG 0.706807 6_2:+10268214 Msa0909110:CDS
TCAGAAGAAAGCAAGCACAG+CGG 0.775243 6_2:+10272781 Msa0909110:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr6_2:10271176-10271195 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr6_2:10271176-10271195 Msa0909110:intron 0.0%
!! ATTATGAAGAATTTAATTAT+AGG + chr6_2:10267094-10267113 Msa0909110:intron 10.0%
!! TTATGAAGAATTTAATTATA+GGG + chr6_2:10267095-10267114 Msa0909110:intron 10.0%
!!! TTTTTAGTTTTAGTTAAAAA+AGG + chr6_2:10269580-10269599 Msa0909110:intron 10.0%
!! TATGAAGAATTTAATTATAG+GGG + chr6_2:10267096-10267115 Msa0909110:intron 15.0%
!! ATTATAATAATCACTGAAAT+TGG - chr6_2:10267215-10267234 None:intergenic 15.0%
!! ATAAAAATGTTAATTGTCAA+AGG - chr6_2:10267950-10267969 None:intergenic 15.0%
!! TAAATAAAAGAAATACACAA+GGG - chr6_2:10268819-10268838 None:intergenic 15.0%
!! ATAAATAAAAGAAATACACA+AGG - chr6_2:10268820-10268839 None:intergenic 15.0%
!! TATAATAATAATAACAAGCA+TGG - chr6_2:10269860-10269879 None:intergenic 15.0%
!!! AATTTTTTTTGGATCTATAA+GGG - chr6_2:10270547-10270566 None:intergenic 15.0%
!!! TAATTTTTTTTGGATCTATA+AGG - chr6_2:10270548-10270567 None:intergenic 15.0%
!! TTATAGATCCAAAAAAAATT+AGG + chr6_2:10270547-10270566 Msa0909110:intron 15.0%
!! GATATAGATTCAAAAAAATT+AGG - chr6_2:10271716-10271735 None:intergenic 15.0%
!!! AAAATATATTTGAGTTATGT+TGG + chr6_2:10272213-10272232 Msa0909110:intron 15.0%
!!! AAATATATTTGAGTTATGTT+GGG + chr6_2:10272214-10272233 Msa0909110:intron 15.0%
!!! TATCTTTTTCATCTCAATTT+AGG + chr6_2:10266786-10266805 Msa0909110:intron 20.0%
!!! ATCTTTTTCATCTCAATTTA+GGG + chr6_2:10266787-10266806 Msa0909110:intron 20.0%
!! TTCAGTGATTATTATAATGA+TGG + chr6_2:10267217-10267236 Msa0909110:intron 20.0%
!! TTTATTGAATAATCACTCAA+TGG + chr6_2:10267514-10267533 Msa0909110:intron 20.0%
!!! ATAAATCTTACCTTTCTTTT+TGG + chr6_2:10267721-10267740 Msa0909110:intron 20.0%
!! TTATGAATTTCAACTGAAAA+AGG - chr6_2:10268170-10268189 None:intergenic 20.0%
!!! AGTACTTTAATTTGATATCA+AGG - chr6_2:10269217-10269236 None:intergenic 20.0%
!!! ATTAAAGTACTCAAATGTAT+AGG + chr6_2:10269226-10269245 Msa0909110:intron 20.0%
!!! AATTGTTTTTGAAAAGAACT+TGG - chr6_2:10269306-10269325 None:intergenic 20.0%
!! AACAATTAAAATTGCATCTA+TGG + chr6_2:10269319-10269338 Msa0909110:intron 20.0%
!!! AGTTTTGAAAACTATAGTTT+GGG + chr6_2:10269505-10269524 Msa0909110:intron 20.0%
!! AGAAGAATAACTAAAAAAGT+TGG + chr6_2:10269552-10269571 Msa0909110:intron 20.0%
!!! TTAGTTTTAGTTAAAAAAGG+AGG + chr6_2:10269583-10269602 Msa0909110:intron 20.0%
!! TGAAAAATTGTATGTCTAAA+TGG - chr6_2:10269753-10269772 None:intergenic 20.0%
!!! TAATCTTTTTTCTTTTTGAC+AGG - chr6_2:10269809-10269828 None:intergenic 20.0%
!! AATTAAATGAGATGAAAACT+TGG - chr6_2:10269949-10269968 None:intergenic 20.0%
!! GAACATATCTTCAATAAATA+AGG - chr6_2:10270464-10270483 None:intergenic 20.0%
!!! TATCTTGACCTAATTTTTTT+TGG - chr6_2:10270558-10270577 None:intergenic 20.0%
!! TGTATATAAGTATCATTCTT+CGG + chr6_2:10270596-10270615 Msa0909110:intron 20.0%
!! GCAAATATCTTCAATAAATA+AGG + chr6_2:10271848-10271867 Msa0909110:intron 20.0%
!!! AATATATTTGAGTTATGTTG+GGG + chr6_2:10272215-10272234 Msa0909110:intron 20.0%
!! CTAAATTGTTTATATTTCCA+TGG + chr6_2:10272356-10272375 Msa0909110:intron 20.0%
!! TTGTCTATACTTGTTTAATA+TGG + chr6_2:10272494-10272513 Msa0909110:intron 20.0%
! TCTCATTCTTATTCTAATTC+TGG + chr6_2:10266653-10266672 Msa0909110:intron 25.0%
! AAATTTCCGAAATCGAAAAA+AGG - chr6_2:10266730-10266749 None:intergenic 25.0%
! ACTATTATATGTTAGTATCG+TGG + chr6_2:10266894-10266913 Msa0909110:intron 25.0%
! TTAAATAGCCCTTGTAATTT+GGG + chr6_2:10266982-10267001 Msa0909110:intron 25.0%
! TTTATTAGCCCAAATTACAA+GGG - chr6_2:10266993-10267012 None:intergenic 25.0%
!! TTTTATTAGCCCAAATTACA+AGG - chr6_2:10266994-10267013 None:intergenic 25.0%
! ATGAACAATCCAAAATTACA+GGG - chr6_2:10267028-10267047 None:intergenic 25.0%
!!! TTCATGAATTAGCCTTTTAT+TGG + chr6_2:10267043-10267062 Msa0909110:intron 25.0%
!!! TCATGAATTAGCCTTTTATT+GGG + chr6_2:10267044-10267063 Msa0909110:intron 25.0%
! ACAAAAATAACCCCAATAAA+AGG - chr6_2:10267058-10267077 None:intergenic 25.0%
!!! TTATTTTTGTAACAGGGTAA+AGG + chr6_2:10267068-10267087 Msa0909110:intron 25.0%
!! GAAATTGGTAATAACTAGAT+GGG - chr6_2:10267200-10267219 None:intergenic 25.0%
!! TGAAATTGGTAATAACTAGA+TGG - chr6_2:10267201-10267220 None:intergenic 25.0%
!!! TTTTAGAATAACGATTATGC+TGG - chr6_2:10267311-10267330 None:intergenic 25.0%
! TAAATTACAGTTATGATTCC+CGG - chr6_2:10267498-10267517 None:intergenic 25.0%
! AAGACAATATAGATACTTTG+AGG + chr6_2:10267631-10267650 Msa0909110:intron 25.0%
! AGACAATATAGATACTTTGA+GGG + chr6_2:10267632-10267651 Msa0909110:intron 25.0%
! AAGAAAGGTAAGATTTATCA+GGG - chr6_2:10267719-10267738 None:intergenic 25.0%
! AAAGAAAGGTAAGATTTATC+AGG - chr6_2:10267720-10267739 None:intergenic 25.0%
!! GAAAGTCATTGTCTTTTAAT+AGG - chr6_2:10267764-10267783 None:intergenic 25.0%
! AATTTCAACTGAAAAAGGAA+GGG - chr6_2:10268165-10268184 None:intergenic 25.0%
! AGTTGAAATTCATAACAAGA+AGG + chr6_2:10268175-10268194 Msa0909110:intron 25.0%
!! AATTCATAACAAGAAGGTTT+TGG + chr6_2:10268181-10268200 Msa0909110:CDS 25.0%
! GTGAAACGAAATGTTATAAA+TGG - chr6_2:10268381-10268400 None:intergenic 25.0%
!!! GATTTGATTGACTGTTTTTA+AGG + chr6_2:10268475-10268494 Msa0909110:intron 25.0%
! TCTTCAGAAATGTTAATGTA+AGG + chr6_2:10268555-10268574 Msa0909110:intron 25.0%
! TTGACAATAAGATACATTCA+TGG - chr6_2:10268671-10268690 None:intergenic 25.0%
! AGATCAAAAATAGGAAATGA+AGG - chr6_2:10268736-10268755 None:intergenic 25.0%
! TAAAGCTAAACAAGAAAAAG+AGG + chr6_2:10268782-10268801 Msa0909110:CDS 25.0%
! ACAGCTAAAAAAACAAAAAC+AGG - chr6_2:10269052-10269071 None:intergenic 25.0%
!!! AACATTTTTTGAGATCAAAC+AGG - chr6_2:10269425-10269444 None:intergenic 25.0%
!! CAAAACTGCTATTTGTAAAA+TGG - chr6_2:10269492-10269511 None:intergenic 25.0%
!!! CAGTTTTGAAAACTATAGTT+TGG + chr6_2:10269504-10269523 Msa0909110:intron 25.0%
!!! TGTTTATTTTATATCGCACT+CGG + chr6_2:10269651-10269670 Msa0909110:intron 25.0%
! AGAATGATACTTATATACAG+AGG - chr6_2:10270595-10270614 None:intergenic 25.0%
!! ATTGATAACAAAAGTGAGTT+TGG + chr6_2:10270877-10270896 Msa0909110:CDS 25.0%
!! ACTTGTTCTAATGTTGTTTA+TGG + chr6_2:10270910-10270929 Msa0909110:CDS 25.0%
!!! TCTGATTTTGATTCTTTCAA+TGG - chr6_2:10271410-10271429 None:intergenic 25.0%
!! AATATTTGTTACACACACAA+AGG + chr6_2:10271672-10271691 Msa0909110:intron 25.0%
! TGTTGCTATATAAATAAGGA+GGG + chr6_2:10271928-10271947 Msa0909110:intron 25.0%
! AATAAAATAAGTGCAACTTG+AGG - chr6_2:10272168-10272187 None:intergenic 25.0%
!! AAATATTTTCTGGGTCAATA+AGG + chr6_2:10272189-10272208 Msa0909110:intron 25.0%
!! ATATATTTGAGTTATGTTGG+GGG + chr6_2:10272216-10272235 Msa0909110:intron 25.0%
! GTTTGTATACAAGAGAATAT+AGG - chr6_2:10272310-10272329 None:intergenic 25.0%
! TTTCATAATCTGAATTGTCA+AGG - chr6_2:10272597-10272616 None:intergenic 25.0%
! TCAATAGTGATCTACATTAA+GGG - chr6_2:10272662-10272681 None:intergenic 25.0%
! TCAAAATCCTCATCATATAA+TGG - chr6_2:10272895-10272914 None:intergenic 25.0%
!! AAAGAAAAACATTTTTCTGC+AGG - chr6_2:10273026-10273045 None:intergenic 25.0%
! TAATTAGACTCGAATCTAAT+GGG + chr6_2:10273080-10273099 Msa0909110:three_prime_UTR 25.0%
!! TTTTTATATACGACAATGGA+GGG - chr6_2:10273165-10273184 None:intergenic 25.0%
!!! TTTTTTATATACGACAATGG+AGG - chr6_2:10273166-10273185 None:intergenic 25.0%
!!! CTGTTTTTTATATACGACAA+TGG - chr6_2:10273169-10273188 None:intergenic 25.0%
! CATTGTCGTATATAAAAAAC+AGG + chr6_2:10273167-10273186 Msa0909110:three_prime_UTR 25.0%
!! ATTTTCATTTATTATCGCCT+AGG + chr6_2:10273229-10273248 Msa0909110:three_prime_UTR 25.0%
AATAAGCTTAAGGACAAGTT+AGG - chr6_2:10266464-10266483 None:intergenic 30.0%
!! CCATGTTAGGTTTTTGATTA+GGG - chr6_2:10266494-10266513 None:intergenic 30.0%
TAATCAAAAACCTAACATGG+CGG + chr6_2:10266494-10266513 Msa0909110:exon 30.0%
AGAGTGATGAAAAAGAAGAA+AGG - chr6_2:10266617-10266636 None:intergenic 30.0%
TTGAGAAGAAGAAGAAGAAT+CGG - chr6_2:10266761-10266780 None:intergenic 30.0%
!! TCTCAATTTAGGGTTTTTGA+TGG + chr6_2:10266797-10266816 Msa0909110:intron 30.0%
! ATTTAAGGTATTAACCCTAG+TGG - chr6_2:10266968-10266987 None:intergenic 30.0%
CAAATTACAAGGGCTATTTA+AGG - chr6_2:10266983-10267002 None:intergenic 30.0%
CTTAAATAGCCCTTGTAATT+TGG + chr6_2:10266981-10267000 Msa0909110:intron 30.0%
! AAAAACCATCCCTGTAATTT+TGG + chr6_2:10267016-10267035 Msa0909110:intron 30.0%
CATGAACAATCCAAAATTAC+AGG - chr6_2:10267029-10267048 None:intergenic 30.0%
!!! CATGAATTAGCCTTTTATTG+GGG + chr6_2:10267045-10267064 Msa0909110:intron 30.0%
!!! ATTGGGGTTATTTTTGTAAC+AGG + chr6_2:10267061-10267080 Msa0909110:intron 30.0%
!!! TTGGGGTTATTTTTGTAACA+GGG + chr6_2:10267062-10267081 Msa0909110:intron 30.0%
TCAAATAGCATCTGTAATTC+GGG - chr6_2:10267169-10267188 None:intergenic 30.0%
CTCAAATAGCATCTGTAATT+CGG - chr6_2:10267170-10267189 None:intergenic 30.0%
TATTATAATGATGGCTGAAC+TGG + chr6_2:10267226-10267245 Msa0909110:intron 30.0%
AATATCCACTAATCTTTACG+AGG + chr6_2:10267349-10267368 Msa0909110:intron 30.0%
CTGTCTGAACTTAACAATAA+CGG - chr6_2:10267459-10267478 None:intergenic 30.0%
TTATTGTTAAGTTCAGACAG+AGG + chr6_2:10267459-10267478 Msa0909110:intron 30.0%
ATCACTTATACTGATATCCA+TGG + chr6_2:10267540-10267559 Msa0909110:intron 30.0%
AGAAAGGTAAGATTTATCAG+GGG - chr6_2:10267718-10267737 None:intergenic 30.0%
! AATCTTACCTTTCTTTTTGG+TGG + chr6_2:10267724-10267743 Msa0909110:intron 30.0%
AAGTAATCCACCAAAAAGAA+AGG - chr6_2:10267734-10267753 None:intergenic 30.0%
!!! GAATCCATAATTTTGAGATG+CGG + chr6_2:10267819-10267838 Msa0909110:intron 30.0%
TCAAGACGTTAACAAAAACA+AGG + chr6_2:10267995-10268014 Msa0909110:intron 30.0%
GGTCTAGCAAGATTATTTAA+AGG - chr6_2:10268049-10268068 None:intergenic 30.0%
TGCAAAAGAAGAAAAAACAG+CGG - chr6_2:10268106-10268125 None:intergenic 30.0%
GAGCAATTATATTGTGAAAC+AGG - chr6_2:10268143-10268162 None:intergenic 30.0%
GAATTTCAACTGAAAAAGGA+AGG - chr6_2:10268166-10268185 None:intergenic 30.0%
AGATATTGTGCAATCATTTG+TGG + chr6_2:10268244-10268263 Msa0909110:CDS 30.0%
GACAACAATCGTATATCATA+TGG - chr6_2:10268308-10268327 None:intergenic 30.0%
! GCATTCATTTTCTCTAAACA+TGG - chr6_2:10268441-10268460 None:intergenic 30.0%
AACAGTCAATCAAATCAACA+AGG - chr6_2:10268471-10268490 None:intergenic 30.0%
TGAATCTAAGTCAAAAGTTG+AGG + chr6_2:10268520-10268539 Msa0909110:CDS 30.0%
TTTATGCATGCACATTTGTT+TGG + chr6_2:10268835-10268854 Msa0909110:intron 30.0%
ACTACAACACAATCTCTAAT+AGG - chr6_2:10268904-10268923 None:intergenic 30.0%
GTAAGGTGAAAGTAGTATAT+AGG - chr6_2:10268978-10268997 None:intergenic 30.0%
TAGAATTGTGTATGATGCTA+TGG + chr6_2:10269076-10269095 Msa0909110:intron 30.0%
!!! GTTTATTTTATATCGCACTC+GGG + chr6_2:10269652-10269671 Msa0909110:intron 30.0%
TGTATCAATAATAACAAGCG+TGG - chr6_2:10269682-10269701 None:intergenic 30.0%
TGTGACATACATTGAACTTT+AGG + chr6_2:10269897-10269916 Msa0909110:intron 30.0%
GTGACATACATTGAACTTTA+GGG + chr6_2:10269898-10269917 Msa0909110:intron 30.0%
AAGAGCAGAAAAGTAAACAA+GGG + chr6_2:10270224-10270243 Msa0909110:CDS 30.0%
! CTCTGAAGAAAAAGTTAATG+AGG + chr6_2:10270307-10270326 Msa0909110:CDS 30.0%
AAGTTCTCTCAAAGATTGTT+TGG + chr6_2:10270342-10270361 Msa0909110:intron 30.0%
TTGTTTGGTATCTTTGTATG+TGG + chr6_2:10270357-10270376 Msa0909110:intron 30.0%
!! AACAATGTTCCTTTGAGATA+TGG + chr6_2:10270746-10270765 Msa0909110:intron 30.0%
!! ACAATGTTCCTTTGAGATAT+GGG + chr6_2:10270747-10270766 Msa0909110:intron 30.0%
AACAATAACACTGTTGTTGA+TGG + chr6_2:10270835-10270854 Msa0909110:CDS 30.0%
! GTTCTAATGTTGTTTATGGT+TGG + chr6_2:10270914-10270933 Msa0909110:CDS 30.0%
CCAAATTCATGGTGATTATT+AGG - chr6_2:10270946-10270965 None:intergenic 30.0%
CCTAATAATCACCATGAATT+TGG + chr6_2:10270943-10270962 Msa0909110:intron 30.0%
AAACTAGAGTTCCAAATTCA+TGG - chr6_2:10270957-10270976 None:intergenic 30.0%
ATATTGATAGATGCATGCAA+AGG - chr6_2:10271037-10271056 None:intergenic 30.0%
TTCACTTCATTTCATAGCAT+TGG - chr6_2:10271147-10271166 None:intergenic 30.0%
ATATATATAGGCATGCAAAG+AGG + chr6_2:10271218-10271237 Msa0909110:intron 30.0%
GCTAATAATCACTATGGATT+TGG - chr6_2:10271328-10271347 None:intergenic 30.0%
TTTGTGGCTAATAATCACTA+TGG - chr6_2:10271334-10271353 None:intergenic 30.0%
!!! GTTCTAATGTTGATTTTGGT+TGG - chr6_2:10271357-10271376 None:intergenic 30.0%
!!! GTCTGTTCTAATGTTGATTT+TGG - chr6_2:10271361-10271380 None:intergenic 30.0%
AACAACAATAGCACTATTGT+CGG - chr6_2:10271437-10271456 None:intergenic 30.0%
!!! TCTTCATTGTCACTTTTGTA+GGG - chr6_2:10271549-10271568 None:intergenic 30.0%
!!! TTCTTCATTGTCACTTTTGT+AGG - chr6_2:10271550-10271569 None:intergenic 30.0%
GACAATGAAGAAGTTATTGT+TGG + chr6_2:10271558-10271577 Msa0909110:intron 30.0%
! AGTGTCTAGAGTACATATAT+TGG - chr6_2:10271587-10271606 None:intergenic 30.0%
! TCTAGACACTTCAATCATTT+TGG + chr6_2:10271597-10271616 Msa0909110:intron 30.0%
TTGTTCTTCACAAACTTTGT+GGG + chr6_2:10271622-10271641 Msa0909110:intron 30.0%
CACCTGTTGCTATATAAATA+AGG + chr6_2:10271924-10271943 Msa0909110:intron 30.0%
! CTCCTTATTTATATAGCAAC+AGG - chr6_2:10271929-10271948 None:intergenic 30.0%
CTGTTGCTATATAAATAAGG+AGG + chr6_2:10271927-10271946 Msa0909110:intron 30.0%
GAATAACCTCTCTTAGTAAA+GGG - chr6_2:10272044-10272063 None:intergenic 30.0%
!!! GAAGAAGAGGATTATTTTGA+TGG + chr6_2:10272571-10272590 Msa0909110:three_prime_UTR 30.0%
TATGAAACTGATGACTCAAA+TGG + chr6_2:10272610-10272629 Msa0909110:three_prime_UTR 30.0%
GTCAATAGTGATCTACATTA+AGG - chr6_2:10272663-10272682 None:intergenic 30.0%
TAATGTAGATCACTATTGAC+TGG + chr6_2:10272663-10272682 Msa0909110:intron 30.0%
ATCATTCATTGGATTGTCTT+CGG - chr6_2:10272716-10272735 None:intergenic 30.0%
CAATCCAATGAATGATTATC+CGG + chr6_2:10272720-10272739 Msa0909110:three_prime_UTR 30.0%
!! GAGGATTTTGATGATTATGA+AGG + chr6_2:10272904-10272923 Msa0909110:three_prime_UTR 30.0%
! TTTGATGATTATGAAGGTCA+AGG + chr6_2:10272910-10272929 Msa0909110:three_prime_UTR 30.0%
GGAATTTATGAGTAATAGGA+TGG - chr6_2:10273005-10273024 None:intergenic 30.0%
TGCAGGAATTTATGAGTAAT+AGG - chr6_2:10273009-10273028 None:intergenic 30.0%
GTAATTAGACTCGAATCTAA+TGG + chr6_2:10273079-10273098 Msa0909110:three_prime_UTR 30.0%
GGGTGCAAATAATAAGCTTA+AGG - chr6_2:10266474-10266493 None:intergenic 35.0%
CCCTAATCAAAAACCTAACA+TGG + chr6_2:10266491-10266510 Msa0909110:exon 35.0%
!! GCCATGTTAGGTTTTTGATT+AGG - chr6_2:10266495-10266514 None:intergenic 35.0%
! TGGTTTGTGCATCTCAATTT+AGG + chr6_2:10266673-10266692 Msa0909110:intron 35.0%
GGTTTGTGCATCTCAATTTA+GGG + chr6_2:10266674-10266693 Msa0909110:intron 35.0%
!!! AAGCGTCCTTTTTTCGATTT+CGG + chr6_2:10266721-10266740 Msa0909110:CDS 35.0%
TCTTCTTCTTCTTCTCAACA+AGG + chr6_2:10266763-10266782 Msa0909110:CDS 35.0%
!! TTTAGGGTTTTTGATGGCTT+TGG + chr6_2:10266803-10266822 Msa0909110:intron 35.0%
ACAATCCAAAATTACAGGGA+TGG - chr6_2:10267024-10267043 None:intergenic 35.0%
! CGAATTACAGATGCTATTTG+AGG + chr6_2:10267168-10267187 Msa0909110:intron 35.0%
CTAATCCTCGTAAAGATTAG+TGG - chr6_2:10267357-10267376 None:intergenic 35.0%
! ATGCTGGTTATGAGTGATAT+TGG - chr6_2:10267388-10267407 None:intergenic 35.0%
!!! TGTTTTGGTCAGATTATTCG+AGG - chr6_2:10267432-10267451 None:intergenic 35.0%
! AACAATAACGGCAGTTGTTT+TGG - chr6_2:10267447-10267466 None:intergenic 35.0%
GGTCTGGAAAAGGAATAAAT+AGG - chr6_2:10267659-10267678 None:intergenic 35.0%
ACAATGACTTTCTGAGTACT+CGG + chr6_2:10267772-10267791 Msa0909110:intron 35.0%
TCTACCGCATCTCAAAATTA+TGG - chr6_2:10267826-10267845 None:intergenic 35.0%
GCTGTCAAATGACACATATA+AGG + chr6_2:10268017-10268036 Msa0909110:intron 35.0%
TTAGTATCCCATCTAGATGA+TGG + chr6_2:10268267-10268286 Msa0909110:intron 35.0%
TTGTTCACCATCATCTAGAT+GGG - chr6_2:10268277-10268296 None:intergenic 35.0%
ATTGTTCACCATCATCTAGA+TGG - chr6_2:10268278-10268297 None:intergenic 35.0%
AGAGCACATTAGAATGAGAT+GGG - chr6_2:10268358-10268377 None:intergenic 35.0%
TTCGTTTCACTCTTCTCATT+AGG + chr6_2:10268391-10268410 Msa0909110:intron 35.0%
CTAAGTCAAAAGTTGAGGAA+AGG + chr6_2:10268525-10268544 Msa0909110:CDS 35.0%
CTTCTGTGGAGATCAAAAAT+AGG - chr6_2:10268745-10268764 None:intergenic 35.0%
CAAGTAAACAAAGCATGCAA+GGG - chr6_2:10268951-10268970 None:intergenic 35.0%
ACAAGTAAACAAAGCATGCA+AGG - chr6_2:10268952-10268971 None:intergenic 35.0%
ATCAAACAGAACTTCAGTCT+GGG - chr6_2:10269005-10269024 None:intergenic 35.0%
GTTCTGTTTGATGCTATGAT+TGG + chr6_2:10269013-10269032 Msa0909110:intron 35.0%
! AAGGGTTTTTGTCTTGACAA+AGG - chr6_2:10269399-10269418 None:intergenic 35.0%
TTTGTCAAGACAAAAACCCT+TGG + chr6_2:10269398-10269417 Msa0909110:intron 35.0%
TTGTCAAGACAAAAACCCTT+GGG + chr6_2:10269399-10269418 Msa0909110:intron 35.0%
!!! GCACTGTTACTTTTTGCTAA+TGG + chr6_2:10269607-10269626 Msa0909110:intron 35.0%
TGTGGCATACAGTTAACTTT+AGG + chr6_2:10269723-10269742 Msa0909110:intron 35.0%
!! ATGCTCGTTTTGAGCAAATA+TGG + chr6_2:10270201-10270220 Msa0909110:CDS 35.0%
GAAGAGCAGAAAAGTAAACA+AGG + chr6_2:10270223-10270242 Msa0909110:CDS 35.0%
AGAGCAGAAAAGTAAACAAG+GGG + chr6_2:10270225-10270244 Msa0909110:CDS 35.0%
TGTTGCTAATAATCCTAGTG+AGG - chr6_2:10270384-10270403 None:intergenic 35.0%
TTGAAAGACTGACGATAAGA+GGG - chr6_2:10270513-10270532 None:intergenic 35.0%
GATACTTATATACAGAGGAG+AGG - chr6_2:10270590-10270609 None:intergenic 35.0%
TTTGTGGGAAATATAGGTGT+GGG - chr6_2:10270629-10270648 None:intergenic 35.0%
TCAGACTTTGTGGGAAATAT+AGG - chr6_2:10270635-10270654 None:intergenic 35.0%
TGTTCTTCTTCAGACTTTGT+GGG - chr6_2:10270644-10270663 None:intergenic 35.0%
TTGTTCTTCTTCAGACTTTG+TGG - chr6_2:10270645-10270664 None:intergenic 35.0%
!! CAATGTTCCTTTGAGATATG+GGG + chr6_2:10270748-10270767 Msa0909110:intron 35.0%
!! AACACTGTTGTTGATGGTTA+TGG + chr6_2:10270841-10270860 Msa0909110:CDS 35.0%
!!! GTTGTTGATGGTTATGGTTT+TGG + chr6_2:10270847-10270866 Msa0909110:CDS 35.0%
GATAACAAAAGTGAGTTTGG+TGG + chr6_2:10270880-10270899 Msa0909110:CDS 35.0%
!! AAAAGTGAGTTTGGTGGTTT+TGG + chr6_2:10270886-10270905 Msa0909110:CDS 35.0%
! ATGAAGATCTGGAATTGAAG+AGG - chr6_2:10271004-10271023 None:intergenic 35.0%
GAAGATTGAGAATGAAGATC+TGG - chr6_2:10271015-10271034 None:intergenic 35.0%
GAAGATTTGACATTGAAGAG+AGG + chr6_2:10271257-10271276 Msa0909110:intron 35.0%
!!! TGTTGATTTTGGTTGGTTTG+TGG - chr6_2:10271350-10271369 None:intergenic 35.0%
! ACAAGCGAGTTAGGTAATTT+TGG - chr6_2:10271385-10271404 None:intergenic 35.0%
!! ATCATCATCACTTGTTGTTG+AGG + chr6_2:10271467-10271486 Msa0909110:intron 35.0%
!! AACAATGATCCTTTGAGGTA+TGG - chr6_2:10271524-10271543 None:intergenic 35.0%
GTTGTTCTTCACAAACTTTG+TGG + chr6_2:10271621-10271640 Msa0909110:intron 35.0%
CACAAACTTTGTGGGAAATA+TGG + chr6_2:10271630-10271649 Msa0909110:intron 35.0%
TTAATGCAGAGATATGTCCT+TGG + chr6_2:10271990-10272009 Msa0909110:intron 35.0%
GGAATAACCTCTCTTAGTAA+AGG - chr6_2:10272045-10272064 None:intergenic 35.0%
TTGCAACAACAAACCTTGTT+TGG - chr6_2:10272109-10272128 None:intergenic 35.0%
ATAAGTGCAACTTGAGGAAA+AGG - chr6_2:10272162-10272181 None:intergenic 35.0%
TTGACCTTGGACATATATAG+AGG + chr6_2:10272389-10272408 Msa0909110:intron 35.0%
TAGTCCTCTATATATGTCCA+AGG - chr6_2:10272396-10272415 None:intergenic 35.0%
TTATGACCTCTACACTGTAA+CGG + chr6_2:10272419-10272438 Msa0909110:three_prime_UTR 35.0%
TACTCACAGTGCATAAGAAT+GGG - chr6_2:10272472-10272491 None:intergenic 35.0%
ATACTCACAGTGCATAAGAA+TGG - chr6_2:10272473-10272492 None:intergenic 35.0%
!! GAACTTCGTAGTTTTGCTAA+AGG + chr6_2:10272847-10272866 Msa0909110:three_prime_UTR 35.0%
!! TAAAGGTGTTACTTCTGATG+TGG + chr6_2:10272864-10272883 Msa0909110:three_prime_UTR 35.0%
GGATGATCCATTATATGATG+AGG + chr6_2:10272885-10272904 Msa0909110:three_prime_UTR 35.0%
TACACAATGCTAAACATCGT+CGG - chr6_2:10273062-10273081 None:intergenic 35.0%
TGCGGAGTAAAAAAAAAACC+AGG + chr6_2:10273131-10273150 Msa0909110:three_prime_UTR 35.0%
!! ATGTTACAGAAAGCATCGAG+TGG - chr6_2:10266588-10266607 None:intergenic 40.0%
! TGTGCATCTCAATTTAGGGT+TGG + chr6_2:10266678-10266697 Msa0909110:intron 40.0%
TCGAAAAAAGGACGCTTGAA+TGG - chr6_2:10266718-10266737 None:intergenic 40.0%
TGTATGTCACCTTTACCACT+AGG + chr6_2:10266950-10266969 Msa0909110:intron 40.0%
GTATGTCACCTTTACCACTA+GGG + chr6_2:10266951-10266970 Msa0909110:intron 40.0%
GGTATTAACCCTAGTGGTAA+AGG - chr6_2:10266962-10266981 None:intergenic 40.0%
AGATTATTCGAGGAGAAGCA+GGG - chr6_2:10267422-10267441 None:intergenic 40.0%
! CAGAGGAGACTGTTTAAAAC+CGG + chr6_2:10267476-10267495 Msa0909110:intron 40.0%
! AGAGGAGACTGTTTAAAACC+GGG + chr6_2:10267477-10267496 Msa0909110:intron 40.0%
AAAAGAGGTAAGAGGGGATA+AGG - chr6_2:10267680-10267699 None:intergenic 40.0%
TCGATGAAAAGAGGTAAGAG+GGG - chr6_2:10267686-10267705 None:intergenic 40.0%
CTCGATGAAAAGAGGTAAGA+GGG - chr6_2:10267687-10267706 None:intergenic 40.0%
! GAGAGCACATTAGAATGAGA+TGG - chr6_2:10268359-10268378 None:intergenic 40.0%
TGCACACGCAGAAAAAAGAA+GGG - chr6_2:10268602-10268621 None:intergenic 40.0%
TACACAGTCACATGTGCATA+TGG + chr6_2:10268634-10268653 Msa0909110:intron 40.0%
!! AAGAGCTGATTTTGCTTCTG+TGG - chr6_2:10268759-10268778 None:intergenic 40.0%
TCAAACAGAACTTCAGTCTG+GGG - chr6_2:10269004-10269023 None:intergenic 40.0%
CATCAAACAGAACTTCAGTC+TGG - chr6_2:10269006-10269025 None:intergenic 40.0%
ATTAAGTGAGGTCAGCTACA+TGG - chr6_2:10269113-10269132 None:intergenic 40.0%
ATGTAGCTGACCTCACTTAA+TGG + chr6_2:10269112-10269131 Msa0909110:intron 40.0%
TGTAGCTGACCTCACTTAAT+GGG + chr6_2:10269113-10269132 Msa0909110:intron 40.0%
TGATGCTCATAATGAGACAG+AGG + chr6_2:10270089-10270108 Msa0909110:intron 40.0%
GATGCTCATAATGAGACAGA+GGG + chr6_2:10270090-10270109 Msa0909110:intron 40.0%
GAAGACTGCGAGAAAGAATA+AGG - chr6_2:10270173-10270192 None:intergenic 40.0%
CACGAACAATGTCATAGAAC+TGG - chr6_2:10270283-10270302 None:intergenic 40.0%
CTTGAAAGACTGACGATAAG+AGG - chr6_2:10270514-10270533 None:intergenic 40.0%
CTTTGTGGGAAATATAGGTG+TGG - chr6_2:10270630-10270649 None:intergenic 40.0%
GAAGAACAACACCACCAAAA+TGG + chr6_2:10270656-10270675 Msa0909110:intron 40.0%
! ATATGGGGCATTCTCATCAA+TGG + chr6_2:10270763-10270782 Msa0909110:intron 40.0%
! TATGGGGCATTCTCATCAAT+GGG + chr6_2:10270764-10270783 Msa0909110:intron 40.0%
AGTTTCCTCAACAACAAGTG+AGG + chr6_2:10270794-10270813 Msa0909110:intron 40.0%
!! ATCATCCTCACTTGTTGTTG+AGG - chr6_2:10270802-10270821 None:intergenic 40.0%
GAATTGAAGAGGTCTTTCGA+GGG - chr6_2:10270993-10271012 None:intergenic 40.0%
ACCTTGAGCAACAAAGATCA+AGG + chr6_2:10271111-10271130 Msa0909110:intron 40.0%
ACCTTGATCTTTGTTGCTCA+AGG - chr6_2:10271115-10271134 None:intergenic 40.0%
TCAATGGAAACAAGCGAGTT+AGG - chr6_2:10271394-10271413 None:intergenic 40.0%
AACAATAGCACTATTGTCGG+TGG - chr6_2:10271434-10271453 None:intergenic 40.0%
GATAATGCACCATACCTCAA+AGG + chr6_2:10271512-10271531 Msa0909110:intron 40.0%
GGGAAAACAATGATCCTTTG+AGG - chr6_2:10271529-10271548 None:intergenic 40.0%
TGAATCTATATCAGTGTGCG+TGG + chr6_2:10271724-10271743 Msa0909110:intron 40.0%
GAATCTATATCAGTGTGCGT+GGG + chr6_2:10271725-10271744 Msa0909110:intron 40.0%
CAAAAGTCTTTGATCCTCCA+AGG - chr6_2:10272010-10272029 None:intergenic 40.0%
TTACCTCCCTTTACTAAGAG+AGG + chr6_2:10272035-10272054 Msa0909110:three_prime_UTR 40.0%
TAACCTCTCTTAGTAAAGGG+AGG - chr6_2:10272041-10272060 None:intergenic 40.0%
ATAAGTGCTCACTCCAAACA+AGG + chr6_2:10272093-10272112 Msa0909110:three_prime_UTR 40.0%
AGGTCAATGCAACATAACCA+TGG - chr6_2:10272376-10272395 None:intergenic 40.0%
! TGGTTATGTTGCATTGACCT+TGG + chr6_2:10272376-10272395 Msa0909110:intron 40.0%
!! CAGAGTTCAAGTTGAAGAAG+AGG + chr6_2:10272558-10272577 Msa0909110:intron 40.0%
GGTAAAGATGAGCAAAGACA+GGG - chr6_2:10272641-10272660 None:intergenic 40.0%
TCGTCCGGATAATCATTCAT+TGG - chr6_2:10272727-10272746 None:intergenic 40.0%
TGATTATCCGGACGAGATTT+CGG + chr6_2:10272732-10272751 Msa0909110:three_prime_UTR 40.0%
GAGATTTCGGAAGATGAAGA+AGG + chr6_2:10272745-10272764 Msa0909110:three_prime_UTR 40.0%
! AGAATTGTCAGATGATGACG+AGG + chr6_2:10272813-10272832 Msa0909110:three_prime_UTR 40.0%
! AATGATGATGACGAGGATGT+AGG + chr6_2:10272946-10272965 Msa0909110:three_prime_UTR 40.0%
AGGATGTAGGTAATGAAGCT+TGG + chr6_2:10272959-10272978 Msa0909110:three_prime_UTR 40.0%
ATGTAGGTAATGAAGCTTGG+AGG + chr6_2:10272962-10272981 Msa0909110:three_prime_UTR 40.0%
! AAACATCGTCGGCTAAATAC+TGG - chr6_2:10273051-10273070 None:intergenic 40.0%
ATTCACAAAACCCACCTAAC+AGG + chr6_2:10273104-10273123 Msa0909110:three_prime_UTR 40.0%
TTACTCCGCAAAATCCTGTT+AGG - chr6_2:10273121-10273140 None:intergenic 40.0%
GAAGAACTTTCCGCCATGTT+AGG - chr6_2:10266507-10266526 None:intergenic 45.0%
CGTTTAACCCTAACGACAAC+AGG - chr6_2:10266549-10266568 None:intergenic 45.0%
TGAACTGGATTGAGCGAATC+AGG + chr6_2:10267241-10267260 Msa0909110:intron 45.0%
GATTGAGCGAATCAGGTTCA+TGG + chr6_2:10267248-10267267 Msa0909110:intron 45.0%
TCTGCTAGCATAATCGAGTG+AGG - chr6_2:10267274-10267293 None:intergenic 45.0%
GATTATTCGAGGAGAAGCAG+GGG - chr6_2:10267421-10267440 None:intergenic 45.0%
CAGATTATTCGAGGAGAAGC+AGG - chr6_2:10267423-10267442 None:intergenic 45.0%
TATCCATGGTACACCAGTTC+TGG + chr6_2:10267554-10267573 Msa0909110:intron 45.0%
ATTCCAGAACTGGTGTACCA+TGG - chr6_2:10267560-10267579 None:intergenic 45.0%
GCATGCTTCTATTCCAGAAC+TGG - chr6_2:10267570-10267589 None:intergenic 45.0%
GCTCGATGAAAAGAGGTAAG+AGG - chr6_2:10267688-10267707 None:intergenic 45.0%
ATAGCACGCTCGATGAAAAG+AGG - chr6_2:10267695-10267714 None:intergenic 45.0%
ATAATCTTGCTAGACCCGAG+CGG + chr6_2:10268053-10268072 Msa0909110:intron 45.0%
ATTCAGTCACAAATCCGCTC+GGG - chr6_2:10268070-10268089 None:intergenic 45.0%
CATTCAGTCACAAATCCGCT+CGG - chr6_2:10268071-10268090 None:intergenic 45.0%
!! GAAGGTTTTGGTGCAACATG+TGG + chr6_2:10268193-10268212 Msa0909110:CDS 45.0%
!! TCAGAAGCACTTCTAGAAGC+AGG - chr6_2:10268503-10268522 None:intergenic 45.0%
GGGAGATAAGTCAAGTAGAG+AGG - chr6_2:10268581-10268600 None:intergenic 45.0%
GCACACGCAGAAAAAAGAAG+GGG - chr6_2:10268601-10268620 None:intergenic 45.0%
CTGCACACGCAGAAAAAAGA+AGG - chr6_2:10268603-10268622 None:intergenic 45.0%
GTAGCTGACCTCACTTAATG+GGG + chr6_2:10269114-10269133 Msa0909110:intron 45.0%
TGACCTCACTTAATGGGGAA+AGG + chr6_2:10269119-10269138 Msa0909110:intron 45.0%
AAGCCTTTCCCCATTAAGTG+AGG - chr6_2:10269125-10269144 None:intergenic 45.0%
TCACTTAATGGGGAAAGGCT+TGG + chr6_2:10269124-10269143 Msa0909110:intron 45.0%
TTGAGATCAAACAGGCCCAA+GGG - chr6_2:10269417-10269436 None:intergenic 45.0%
! TTTGAGATCAAACAGGCCCA+AGG - chr6_2:10269418-10269437 None:intergenic 45.0%
CTTTGTATGTGGACCTCACT+AGG + chr6_2:10270368-10270387 Msa0909110:intron 45.0%
CACCAAAATGGCTGAAGCTA+CGG + chr6_2:10270668-10270687 Msa0909110:intron 45.0%
ACCAAAATGGCTGAAGCTAC+GGG + chr6_2:10270669-10270688 Msa0909110:intron 45.0%
GAGAATGCCCCATATCTCAA+AGG - chr6_2:10270758-10270777 None:intergenic 45.0%
GGAATTGAAGAGGTCTTTCG+AGG - chr6_2:10270994-10271013 None:intergenic 45.0%
CATTGAAGAGAGGTCGTTAG+AGG + chr6_2:10271267-10271286 Msa0909110:intron 45.0%
ACTTTGTGGGAAATATGGCG+TGG + chr6_2:10271635-10271654 Msa0909110:intron 45.0%
ATGCAGAGATATGTCCTTGG+AGG + chr6_2:10271993-10272012 Msa0909110:intron 45.0%
TCAATCTCTGCAGCAGCATT+GGG - chr6_2:10272066-10272085 None:intergenic 45.0%
TTCAATCTCTGCAGCAGCAT+TGG - chr6_2:10272067-10272086 None:intergenic 45.0%
TCTCATCCGTTACAGTGTAG+AGG - chr6_2:10272428-10272447 None:intergenic 45.0%
GGGTAAAGATGAGCAAAGAC+AGG - chr6_2:10272642-10272661 None:intergenic 45.0%
TCATCTTCCGAAATCTCGTC+CGG - chr6_2:10272742-10272761 None:intergenic 45.0%
TCAGAAGAAAGCAAGCACAG+CGG + chr6_2:10272781-10272800 Msa0909110:three_prime_UTR 45.0%
GATTATGAAGGTCAAGGTGC+AGG + chr6_2:10272916-10272935 Msa0909110:three_prime_UTR 45.0%
! CGATGACAATGATGATGACG+AGG + chr6_2:10272939-10272958 Msa0909110:three_prime_UTR 45.0%
TAGGTAATGAAGCTTGGAGG+TGG + chr6_2:10272965-10272984 Msa0909110:three_prime_UTR 45.0%
GAGTAATAGGATGGCTTCAC+CGG - chr6_2:10272996-10273015 None:intergenic 45.0%
! ACCCACCTAACAGGATTTTG+CGG + chr6_2:10273113-10273132 Msa0909110:three_prime_UTR 45.0%
TCCGCAAAATCCTGTTAGGT+GGG - chr6_2:10273117-10273136 None:intergenic 45.0%
!! AGTAATAAAAATAAATAAAT+TGG - chr6_2:10269980-10269999 None:intergenic 5.0%
!! ATCAATATATATAAATATAT+AGG + chr6_2:10271049-10271068 Msa0909110:intron 5.0%
!!! TATTTTATTTAAATATTTTC+TGG + chr6_2:10272179-10272198 Msa0909110:intron 5.0%
!!! ATTTTATTTAAATATTTTCT+GGG + chr6_2:10272180-10272199 Msa0909110:intron 5.0%
ACCGAAGCCTGTTGTCGTTA+GGG + chr6_2:10266539-10266558 Msa0909110:CDS 50.0%
ACCCTAACGACAACAGGCTT+CGG - chr6_2:10266543-10266562 None:intergenic 50.0%
GCATCGAGTGGAGAATGAGA+GGG - chr6_2:10266576-10266595 None:intergenic 50.0%
! AGCATCGAGTGGAGAATGAG+AGG - chr6_2:10266577-10266596 None:intergenic 50.0%
GCATCTGTAATTCGGGAACG+AGG - chr6_2:10267162-10267181 None:intergenic 50.0%
AGGAGAAGCAGGGGAATGAA+TGG - chr6_2:10267412-10267431 None:intergenic 50.0%
GAGGGGATAAGGTCTGGAAA+AGG - chr6_2:10267669-10267688 None:intergenic 50.0%
AGGTAAGAGGGGATAAGGTC+TGG - chr6_2:10267675-10267694 None:intergenic 50.0%
GGAGACAATAAGCAGCTCTG+AGG + chr6_2:10268214-10268233 Msa0909110:CDS 50.0%
ACTTCAGTCTGGGGACTGTA+AGG - chr6_2:10268995-10269014 None:intergenic 50.0%
ACAGACGCTACGCTAATGTG+TGG + chr6_2:10269705-10269724 Msa0909110:intron 50.0%
!! CGTAGCTTCAGCCATTTTGG+TGG - chr6_2:10270670-10270689 None:intergenic 50.0%
! TCCCGTAGCTTCAGCCATTT+TGG - chr6_2:10270673-10270692 None:intergenic 50.0%
GGTCGTTAGAGGTCTCAAGA+TGG + chr6_2:10271278-10271297 Msa0909110:intron 50.0%
GGATGAGACGATCGTTGAAG+AGG + chr6_2:10272440-10272459 Msa0909110:three_prime_UTR 50.0%
! GTCAGATGATGACGAGGATG+TGG + chr6_2:10272819-10272838 Msa0909110:three_prime_UTR 50.0%
AAGCTTGGAGGTGGTCATAC+CGG + chr6_2:10272974-10272993 Msa0909110:three_prime_UTR 50.0%
CTCCGCAAAATCCTGTTAGG+TGG - chr6_2:10273118-10273137 None:intergenic 50.0%
! CAATGGAGGGCGTAATATCC+TGG - chr6_2:10273152-10273171 None:intergenic 50.0%
GGCGGAAAGTTCTTCGTCTC+CGG + chr6_2:10266512-10266531 Msa0909110:CDS 55.0%
CTAACGACAACAGGCTTCGG+TGG - chr6_2:10266540-10266559 None:intergenic 55.0%
CACCGAAGCCTGTTGTCGTT+AGG + chr6_2:10266538-10266557 Msa0909110:CDS 55.0%
!! ATGAAGCACCGACGCAGACA+CGG - chr6_2:10266923-10266942 None:intergenic 55.0%
! TGTCTGCGTCGGTGCTTCAT+AGG + chr6_2:10266923-10266942 Msa0909110:intron 55.0%
! GTCTGCGTCGGTGCTTCATA+GGG + chr6_2:10266924-10266943 Msa0909110:intron 55.0%
CAGGGGAATGAATGGCATGC+TGG - chr6_2:10267404-10267423 None:intergenic 55.0%
ACAACAGGCTTCGGTGGAGC+CGG - chr6_2:10266534-10266553 None:intergenic 60.0%
CGTGGTGTCCGTGTCTGCGT+CGG + chr6_2:10266912-10266931 Msa0909110:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 10266461 10273260 10266461 ID=Msa0909110;Name=Msa0909110
chr6_2 mRNA 10266461 10273260 10266461 ID=Msa0909110-mRNA-1;Parent=Msa0909110;Name=Msa0909110-mRNA-1;_AED=0.14;_eAED=0.14;_QI=49|0.8|0.81|1|1|1|11|810|222
chr6_2 exon 10266461 10266600 10266461 ID=Msa0909110-mRNA-1:exon:2609;Parent=Msa0909110-mRNA-1
chr6_2 exon 10266695 10266784 10266695 ID=Msa0909110-mRNA-1:exon:2610;Parent=Msa0909110-mRNA-1
chr6_2 exon 10268177 10268265 10268177 ID=Msa0909110-mRNA-1:exon:2611;Parent=Msa0909110-mRNA-1
chr6_2 exon 10268497 10268571 10268497 ID=Msa0909110-mRNA-1:exon:2612;Parent=Msa0909110-mRNA-1
chr6_2 exon 10268762 10268803 10268762 ID=Msa0909110-mRNA-1:exon:2613;Parent=Msa0909110-mRNA-1
chr6_2 exon 10270188 10270328 10270188 ID=Msa0909110-mRNA-1:exon:2614;Parent=Msa0909110-mRNA-1
chr6_2 exon 10270796 10270935 10270796 ID=Msa0909110-mRNA-1:exon:2615;Parent=Msa0909110-mRNA-1
chr6_2 exon 10271999 10272114 10271999 ID=Msa0909110-mRNA-1:exon:2616;Parent=Msa0909110-mRNA-1
chr6_2 exon 10272409 10272484 10272409 ID=Msa0909110-mRNA-1:exon:2617;Parent=Msa0909110-mRNA-1
chr6_2 exon 10272561 10272631 10272561 ID=Msa0909110-mRNA-1:exon:2618;Parent=Msa0909110-mRNA-1
chr6_2 exon 10272713 10273260 10272713 ID=Msa0909110-mRNA-1:exon:2619;Parent=Msa0909110-mRNA-1
chr6_2 five_prime_UTR 10266461 10266509 10266461 ID=Msa0909110-mRNA-1:five_prime_utr;Parent=Msa0909110-mRNA-1
chr6_2 CDS 10266510 10266600 10266510 ID=Msa0909110-mRNA-1:cds;Parent=Msa0909110-mRNA-1
chr6_2 CDS 10266695 10266784 10266695 ID=Msa0909110-mRNA-1:cds;Parent=Msa0909110-mRNA-1
chr6_2 CDS 10268177 10268265 10268177 ID=Msa0909110-mRNA-1:cds;Parent=Msa0909110-mRNA-1
chr6_2 CDS 10268497 10268571 10268497 ID=Msa0909110-mRNA-1:cds;Parent=Msa0909110-mRNA-1
chr6_2 CDS 10268762 10268803 10268762 ID=Msa0909110-mRNA-1:cds;Parent=Msa0909110-mRNA-1
chr6_2 CDS 10270188 10270328 10270188 ID=Msa0909110-mRNA-1:cds;Parent=Msa0909110-mRNA-1
chr6_2 CDS 10270796 10270935 10270796 ID=Msa0909110-mRNA-1:cds;Parent=Msa0909110-mRNA-1
chr6_2 CDS 10271999 10271999 10271999 ID=Msa0909110-mRNA-1:cds;Parent=Msa0909110-mRNA-1
chr6_2 three_prime_UTR 10272000 10272114 10272000 ID=Msa0909110-mRNA-1:three_prime_utr;Parent=Msa0909110-mRNA-1
chr6_2 three_prime_UTR 10272409 10272484 10272409 ID=Msa0909110-mRNA-1:three_prime_utr;Parent=Msa0909110-mRNA-1
chr6_2 three_prime_UTR 10272561 10272631 10272561 ID=Msa0909110-mRNA-1:three_prime_utr;Parent=Msa0909110-mRNA-1
chr6_2 three_prime_UTR 10272713 10273260 10272713 ID=Msa0909110-mRNA-1:three_prime_utr;Parent=Msa0909110-mRNA-1
Gene Sequence

>Msa0909110

ATGGCGGAAAGTTCTTCGTCTCCGGCTCCACCGAAGCCTGTTGTCGTTAGGGTTAAACGAAAACCCTCTCATTCTCCACTCGATGCTTTCTGGTTGGAAATCAACGAGAGACCATTCAAGCGTCCTTTTTTCGATTTCGGAAATTTATCAATCTCCGATTCTTCTTCTTCTTCTCAACAAGTTGAAATTCATAACAAGAAGGTTTTGGTGCAACATGTGGAGACAATAAGCAGCTCTGAGGTCACTTTAGATATTGTGCAATCATTTGTGGAACCTGCTTCTAGAAGTGCTTCTGAATCTAAGTCAAAAGTTGAGGAAAGGAAGAACTTCTTCAGAAATGTTAATAAGCAAAATCAGCTCTTCTTTAAAGCTAAACAAGAAAAAGAGTCTTCAGCTAAAGATGCTCGTTTTGAGCAAATATGGAAGAGCAGAAAAGTAAACAAGGGGACAGCTGATGAAAACGCATTACAAGAAATATGCCAGTTCTATGACATTGTTCGTGTTGACTCTGAAGAAAAAGTTAATGAGTTTCCTCAACAACAAGTGAGGATGATCAATGACGACAACAACAATAACACTGTTGTTGATGGTTATGGTTTTGGTCATTTCATTGATAACAAAAGTGAGTTTGGTGGTTTTGGAACTTGTTCTAATGTTGTTTATGGTTGA

Protein sequence

>Msa0909110

MAESSSSPAPPKPVVVRVKRKPSHSPLDAFWLEINERPFKRPFFDFGNLSISDSSSSSQQVEIHNKKVLVQHVETISSSEVTLDIVQSFVEPASRSASESKSKVEERKNFFRNVNKQNQLFFKAKQEKESSAKDARFEQIWKSRKVNKGTADENALQEICQFYDIVRVDSEEKVNEFPQQQVRMINDDNNNNTVVDGYGFGHFIDNKSEFGGFGTCSNVVYG*