AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054260 MtrunA17_Chr1g0150271 91.270 252 20 2 1 251 5 255 5.15e-173 476
Msa0054260 MtrunA17_Chr1g0150281 46.626 163 74 4 78 234 122 277 7.45e-42 144
Msa0054260 MtrunA17_Chr4g0001361 36.466 266 131 4 2 229 45 310 1.81e-41 144
Msa0054260 MtrunA17_Chr2g0333851 37.121 264 123 6 2 229 53 309 7.13e-40 140
Msa0054260 MtrunA17_Chr3g0136961 41.250 160 83 2 81 229 123 282 2.41e-37 132
Msa0054260 MtrunA17_Chr7g0270831 38.378 185 82 6 2 156 94 276 1.87e-30 117
Msa0054260 MtrunA17_Chr3g0099641 48.421 95 47 1 78 172 235 327 7.90e-27 107
Msa0054260 MtrunA17_Chr4g0060271 52.439 82 37 1 75 156 236 315 2.37e-25 104
Msa0054260 MtrunA17_Chr4g0051181 42.342 111 52 2 56 156 195 303 3.19e-25 103
Msa0054260 MtrunA17_Chr2g0288871 54.795 73 33 0 84 156 293 365 1.90e-24 101
Msa0054260 MtrunA17_Chr4g0075201 54.795 73 33 0 84 156 255 327 3.77e-24 100
Msa0054260 MtrunA17_Chr2g0302391 50.575 87 40 2 94 180 209 292 2.90e-23 97.4
Msa0054260 MtrunA17_Chr2g0322391 52.055 73 35 0 84 156 337 409 3.67e-23 98.2
Msa0054260 MtrunA17_Chr7g0216891 61.017 59 23 0 95 153 218 276 6.06e-23 97.4
Msa0054260 MtrunA17_Chr4g0025051 57.143 63 27 0 94 156 333 395 1.52e-22 96.3
Msa0054260 MtrunA17_Chr4g0025061 53.030 66 31 0 91 156 355 420 1.58e-21 93.2
Msa0054260 MtrunA17_Chr5g0447701 50.000 76 35 2 81 156 239 311 9.20e-20 87.4
Msa0054260 MtrunA17_Chr5g0447701 42.029 69 38 2 94 162 90 156 5.90e-11 62.0
Msa0054260 MtrunA17_Chr5g0432161 52.381 63 29 1 94 156 419 480 3.00e-19 86.7
Msa0054260 MtrunA17_Chr5g0432161 48.333 60 29 2 97 156 245 302 1.39e-12 67.0
Msa0054260 MtrunA17_Chr3g0101131 43.011 93 47 3 67 156 385 474 3.81e-19 86.3
Msa0054260 MtrunA17_Chr5g0445311 42.424 99 46 4 66 156 328 423 4.30e-19 86.3
Msa0054260 MtrunA17_Chr2g0294231 45.745 94 43 3 95 181 202 294 4.63e-18 82.4
Msa0054260 MtrunA17_Chr3g0079691 47.945 73 37 1 84 156 483 554 7.84e-18 82.4
Msa0054260 MtrunA17_Chr3g0079691 42.667 75 34 3 89 156 266 338 8.29e-12 64.7
Msa0054260 MtrunA17_Chr4g0004911 46.575 73 38 1 84 156 324 395 1.57e-17 81.3
Msa0054260 MtrunA17_Chr4g0004911 45.902 61 32 1 96 156 184 243 1.59e-12 66.6
Msa0054260 MtrunA17_Chr3g0106491 49.206 63 31 1 94 156 363 424 2.24e-17 80.9
Msa0054260 MtrunA17_Chr3g0106491 50.000 60 28 2 97 156 199 256 4.90e-13 68.2
Msa0054260 MtrunA17_Chr7g0218081 40.952 105 53 4 69 167 382 483 2.41e-17 80.9
Msa0054260 MtrunA17_Chr7g0218081 48.333 60 29 2 97 156 229 286 3.23e-11 62.8
Msa0054260 MtrunA17_Chr7g0243891 46.575 73 38 1 84 156 362 433 2.50e-17 80.9
Msa0054260 MtrunA17_Chr7g0243891 34.058 138 63 7 83 220 208 317 7.43e-12 64.7
Msa0054260 MtrunA17_Chr4g0053281 51.613 62 30 0 94 155 264 325 2.61e-17 80.1
Msa0054260 MtrunA17_Chr1g0194481 50.769 65 31 1 95 159 157 220 3.93e-17 79.3
Msa0054260 MtrunA17_Chr2g0289181 46.970 66 35 0 91 156 9 74 7.19e-17 77.0
Msa0054260 MtrunA17_Chr1g0184691 48.485 66 33 1 94 158 291 356 1.04e-16 78.6
Msa0054260 MtrunA17_Chr7g0249311 49.206 63 31 1 94 156 390 451 1.83e-16 78.6
Msa0054260 MtrunA17_Chr7g0249311 43.750 80 41 3 96 175 179 254 1.82e-12 66.6
Msa0054260 MtrunA17_Chr5g0418191 40.404 99 49 3 66 156 283 379 1.86e-16 78.2
Msa0054260 MtrunA17_Chr5g0418191 35.922 103 58 3 97 199 152 246 5.07e-14 70.9
Msa0054260 MtrunA17_Chr5g0401821 50.000 62 31 0 94 155 197 258 2.35e-16 76.6
Msa0054260 MtrunA17_Chr7g0270191 46.053 76 38 2 95 170 144 216 3.01e-16 76.6
Msa0054260 MtrunA17_Chr4g0051881 41.111 90 43 3 95 175 177 265 3.11e-16 77.0
Msa0054260 MtrunA17_Chr7g0224801 48.387 62 31 1 94 155 91 151 3.60e-16 73.9
Msa0054260 MtrunA17_Chr1g0150801 48.333 60 30 1 94 153 100 158 3.64e-16 73.6
Msa0054260 MtrunA17_Chr7g0228941 51.667 60 29 0 94 153 50 109 3.98e-16 72.8
Msa0054260 MtrunA17_Chr4g0042831 42.683 82 43 3 75 156 260 337 4.10e-16 77.0
Msa0054260 MtrunA17_Chr4g0042831 43.421 76 38 2 97 172 146 216 9.69e-11 61.2
Msa0054260 MtrunA17_Chr7g0249301 47.619 63 32 1 94 156 290 351 4.66e-16 76.6
Msa0054260 MtrunA17_Chr7g0249301 41.975 81 43 3 95 175 61 137 2.42e-13 68.9
Msa0054260 MtrunA17_Chr5g0443131 48.387 62 31 1 95 156 156 216 5.19e-16 75.9
Msa0054260 MtrunA17_Chr2g0284321 48.333 60 31 0 97 156 36 95 6.19e-16 74.3
Msa0054260 MtrunA17_Chr7g0263531 46.970 66 34 1 91 156 356 420 1.00e-15 75.9
Msa0054260 MtrunA17_Chr7g0263531 48.571 70 34 2 97 166 190 257 5.02e-15 73.9
Msa0054260 MtrunA17_Chr1g0188941 34.951 103 57 3 54 156 18 110 1.28e-15 70.9
Msa0054260 MtrunA17_Chr1g0147881 46.774 62 33 0 94 155 260 321 1.59e-15 75.1
Msa0054260 MtrunA17_Chr8g0379461 48.333 60 31 0 97 156 77 136 1.65e-15 73.6
Msa0054260 MtrunA17_Chr3g0129361 44.615 65 35 1 94 158 142 205 4.08e-15 72.0
Msa0054260 MtrunA17_Chr5g0418781 37.615 109 57 4 95 193 123 230 5.89e-15 72.8
Msa0054260 MtrunA17_Chr8g0335811 43.939 66 36 1 94 159 152 216 7.31e-15 71.6
Msa0054260 MtrunA17_Chr3g0139021 50.000 60 30 0 94 153 312 371 8.48e-15 73.2
Msa0054260 MtrunA17_Chr8g0383351 43.077 65 36 1 94 158 158 221 1.03e-14 71.2
Msa0054260 MtrunA17_Chr4g0024391 39.726 73 44 0 84 156 217 289 1.82e-14 72.4
Msa0054260 MtrunA17_Chr4g0074001 46.032 63 33 1 94 156 357 418 2.68e-14 72.0
Msa0054260 MtrunA17_Chr7g0270051 48.333 60 31 0 97 156 54 113 2.87e-14 70.5
Msa0054260 MtrunA17_Chr2g0319961 45.455 66 36 0 91 156 75 140 3.18e-14 70.5
Msa0054260 MtrunA17_Chr4g0068541 40.506 79 44 2 78 156 192 267 3.75e-14 71.2
Msa0054260 MtrunA17_Chr7g0248721 51.667 60 27 2 94 153 139 196 4.42e-14 69.3
Msa0054260 MtrunA17_Chr4g0071521 47.541 61 32 0 94 154 243 303 5.83e-14 70.1
Msa0054260 MtrunA17_Chr8g0383251 35.897 117 64 5 40 156 62 167 9.65e-14 67.8
Msa0054260 MtrunA17_Chr2g0293481 43.939 66 37 0 93 158 264 329 1.03e-13 70.1
Msa0054260 MtrunA17_Chr7g0238921 50.877 57 27 1 97 153 125 180 1.14e-13 69.3
Msa0054260 MtrunA17_Chr7g0248691 34.951 103 56 1 54 156 123 214 1.92e-13 68.9
Msa0054260 MtrunA17_Chr8g0387501 42.169 83 43 1 97 179 130 207 2.51e-13 68.2
Msa0054260 MtrunA17_Chr3g0129321 43.284 67 37 1 94 160 116 181 3.06e-13 66.6
Msa0054260 MtrunA17_Chr8g0348311 45.902 61 33 0 97 157 156 216 3.53e-13 68.2
Msa0054260 MtrunA17_Chr6g0485431 34.737 95 58 3 63 156 123 214 3.80e-13 68.2
Msa0054260 MtrunA17_Chr8g0386241 38.095 84 49 2 94 177 101 181 4.11e-13 65.9
Msa0054260 MtrunA17_Chr5g0432071 42.857 70 38 2 97 166 105 172 1.30e-12 65.1
Msa0054260 MtrunA17_Chr1g0202461 43.333 60 34 0 97 156 262 321 7.92e-12 64.3
Msa0054260 MtrunA17_Chr1g0189391 35.870 92 55 3 64 154 67 155 3.24e-11 62.4
Msa0054260 MtrunA17_Chr3g0126391 33.333 105 66 2 95 195 132 236 4.28e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054260 AT1G80840.1 36.996 273 135 5 2 237 27 299 2.64e-45 154
Msa0054260 AT4G31800.2 49.351 154 70 2 82 235 97 242 3.46e-42 144
Msa0054260 AT4G31800.1 49.351 154 70 2 82 235 162 307 1.16e-41 145
Msa0054260 AT2G25000.1 36.923 260 114 8 2 239 39 270 2.20e-37 132
Msa0054260 AT2G25000.2 42.623 183 77 6 57 239 73 227 4.86e-37 130
Msa0054260 AT2G25000.4 42.623 183 77 6 57 239 73 227 4.86e-37 130
Msa0054260 AT2G25000.3 43.169 183 76 6 57 239 95 249 2.10e-36 129
Msa0054260 AT4G04450.2 47.191 89 47 0 84 172 186 274 4.36e-26 105
Msa0054260 AT4G04450.1 47.191 89 47 0 84 172 280 368 1.12e-25 105
Msa0054260 AT4G22070.4 56.164 73 32 0 84 156 285 357 3.10e-25 104
Msa0054260 AT4G22070.3 56.164 73 32 0 84 156 285 357 3.10e-25 104
Msa0054260 AT4G22070.2 56.164 73 32 0 84 156 285 357 3.10e-25 104
Msa0054260 AT4G22070.1 56.164 73 32 0 84 156 285 357 3.10e-25 104
Msa0054260 AT1G62300.1 56.164 73 32 0 84 156 300 372 3.32e-25 104
Msa0054260 AT1G68150.1 48.810 84 43 0 73 156 212 295 9.55e-25 101
Msa0054260 AT1G18860.1 53.165 79 35 1 78 156 223 299 2.79e-23 98.6
Msa0054260 AT5G15130.2 58.065 62 26 0 95 156 184 245 4.97e-23 97.8
Msa0054260 AT5G15130.1 58.065 62 26 0 95 156 226 287 5.04e-23 97.8
Msa0054260 AT4G31800.3 75.000 52 13 0 82 133 162 213 5.43e-23 94.4
Msa0054260 AT4G01720.1 45.000 100 51 2 61 156 200 299 2.78e-22 95.5
Msa0054260 AT1G69810.2 34.783 161 96 5 3 159 54 209 1.90e-21 91.7
Msa0054260 AT1G69810.1 33.962 159 98 4 12 166 119 274 2.10e-21 92.4
Msa0054260 AT2G04880.2 38.053 113 58 3 94 205 281 382 5.83e-20 89.0
Msa0054260 AT2G04880.2 42.857 63 34 2 94 156 109 169 4.88e-11 62.8
Msa0054260 AT2G04880.1 43.011 93 42 2 94 186 305 386 6.85e-20 88.6
Msa0054260 AT2G04880.1 42.857 63 34 2 94 156 109 169 5.70e-11 62.4
Msa0054260 AT2G38470.1 42.353 85 39 2 94 178 360 434 9.29e-19 85.5
Msa0054260 AT2G38470.1 40.506 79 37 3 86 156 166 242 7.86e-13 68.2
Msa0054260 AT4G26640.5 42.708 96 49 2 66 156 170 264 1.35e-18 84.3
Msa0054260 AT4G26640.6 42.708 96 49 2 66 156 170 264 1.35e-18 84.3
Msa0054260 AT4G26640.4 42.708 96 49 2 66 156 170 264 1.35e-18 84.3
Msa0054260 AT4G26640.3 42.708 96 49 2 66 156 170 264 1.35e-18 84.3
Msa0054260 AT5G56270.1 52.381 63 29 1 94 156 485 546 1.43e-18 85.1
Msa0054260 AT4G26640.1 42.708 96 49 2 66 156 274 368 2.16e-18 84.3
Msa0054260 AT4G26640.7 42.708 96 49 2 66 156 306 400 2.51e-18 84.3
Msa0054260 AT4G26640.2 42.708 96 49 2 66 156 346 440 2.64e-18 84.3
Msa0054260 AT3G04670.1 40.000 105 58 1 49 153 220 319 1.57e-17 80.9
Msa0054260 AT5G28650.1 51.667 60 29 0 94 153 260 319 3.17e-17 80.1
Msa0054260 AT1G64000.1 45.205 73 37 2 81 153 101 170 3.87e-17 77.4
Msa0054260 AT5G41570.1 41.000 100 49 4 54 153 65 154 4.17e-17 77.0
Msa0054260 AT1G29860.1 48.387 62 31 1 95 156 135 195 6.33e-17 78.6
Msa0054260 AT2G03340.1 47.143 70 36 1 87 156 406 474 1.12e-16 79.3
Msa0054260 AT2G03340.1 37.736 106 55 5 60 156 205 308 1.11e-14 73.6
Msa0054260 AT2G30590.1 50.000 60 30 0 94 153 311 370 1.48e-16 78.6
Msa0054260 AT5G13080.1 48.387 62 31 1 94 155 65 125 1.78e-16 74.3
Msa0054260 AT4G18170.1 45.161 62 33 1 95 156 171 231 2.27e-16 77.4
Msa0054260 AT1G13960.1 47.619 63 32 1 94 156 407 468 2.59e-16 78.2
Msa0054260 AT1G13960.1 43.210 81 35 4 76 156 218 287 1.12e-12 67.8
Msa0054260 AT1G13960.2 45.714 70 37 1 87 156 247 315 2.97e-16 77.4
Msa0054260 AT1G13960.2 43.210 81 35 4 76 156 65 134 1.36e-12 67.0
Msa0054260 AT2G47260.1 44.578 83 45 1 95 177 173 254 3.41e-16 77.0
Msa0054260 AT3G62340.1 39.796 98 53 2 91 183 113 209 3.71e-16 76.3
Msa0054260 AT3G01080.1 45.714 70 37 1 87 156 297 365 4.62e-16 77.4
Msa0054260 AT2G23320.1 49.153 59 30 0 97 155 241 299 4.76e-16 76.6
Msa0054260 AT3G01080.2 45.714 70 37 1 87 156 335 403 4.80e-16 77.4
Msa0054260 AT2G30250.1 40.698 86 48 2 71 156 305 387 6.31e-16 77.0
Msa0054260 AT2G30250.1 39.130 92 44 3 97 188 167 246 1.40e-11 64.3
Msa0054260 AT5G07100.2 42.029 69 39 1 94 162 139 206 1.90e-15 73.6
Msa0054260 AT5G07100.2 48.571 70 34 2 97 166 25 92 5.30e-13 66.6
Msa0054260 AT5G07100.4 42.029 69 39 1 94 162 139 206 1.90e-15 73.6
Msa0054260 AT5G07100.4 48.571 70 34 2 97 166 25 92 5.30e-13 66.6
Msa0054260 AT5G07100.5 42.029 69 39 1 94 162 139 206 1.90e-15 73.6
Msa0054260 AT5G07100.5 48.571 70 34 2 97 166 25 92 5.30e-13 66.6
Msa0054260 AT5G07100.3 42.029 69 39 1 94 162 139 206 1.90e-15 73.6
Msa0054260 AT5G07100.3 48.571 70 34 2 97 166 25 92 5.30e-13 66.6
Msa0054260 AT5G46350.1 43.548 62 34 1 95 156 182 242 2.53e-15 74.7
Msa0054260 AT5G07100.1 44.444 63 34 1 94 156 232 293 2.65e-15 74.3
Msa0054260 AT5G07100.1 48.571 70 34 2 97 166 118 185 1.21e-12 66.6
Msa0054260 AT2G24570.1 48.333 60 31 0 94 153 241 300 2.66e-15 74.3
Msa0054260 AT5G49520.1 46.774 62 32 1 95 156 220 280 2.82e-15 75.1
Msa0054260 AT4G31550.1 48.333 60 31 0 94 153 244 303 2.93e-15 74.3
Msa0054260 AT2G44745.1 43.478 69 38 1 94 162 143 210 2.98e-15 72.8
Msa0054260 AT4G31550.2 48.333 60 31 0 94 153 243 302 3.06e-15 74.3
Msa0054260 AT3G01970.1 46.377 69 34 2 94 160 63 130 3.26e-15 71.2
Msa0054260 AT4G24240.1 45.161 62 34 0 94 155 279 340 3.38e-15 74.3
Msa0054260 AT2G46130.1 39.560 91 46 3 63 153 5 86 3.96e-15 69.7
Msa0054260 AT5G26170.1 43.750 64 35 1 94 157 111 173 4.33e-15 71.6
Msa0054260 AT4G30935.1 46.032 63 33 1 94 156 329 390 5.45e-15 74.3
Msa0054260 AT2G37260.2 47.059 68 35 1 86 153 257 323 6.59e-15 73.6
Msa0054260 AT2G37260.2 44.444 72 36 3 86 157 75 142 1.59e-12 66.6
Msa0054260 AT2G37260.3 47.059 68 35 1 86 153 259 325 6.67e-15 73.6
Msa0054260 AT2G37260.3 44.444 72 36 3 86 157 77 144 1.62e-12 66.6
Msa0054260 AT2G37260.1 47.059 68 35 1 86 153 339 405 7.05e-15 73.9
Msa0054260 AT2G37260.1 47.541 61 30 2 97 157 166 224 1.62e-12 67.0
Msa0054260 AT1G55600.1 51.667 60 28 1 97 156 308 366 1.19e-14 73.6
Msa0054260 AT1G29280.1 46.667 60 32 0 97 156 75 134 1.73e-14 71.6
Msa0054260 AT1G69310.4 47.458 59 30 1 95 153 146 203 2.23e-14 71.6
Msa0054260 AT1G69310.2 47.458 59 30 1 95 153 146 203 2.23e-14 71.6
Msa0054260 AT1G69310.1 47.458 59 30 1 95 153 146 203 2.23e-14 71.6
Msa0054260 AT4G26440.1 38.596 114 57 4 66 171 336 444 7.89e-14 71.2
Msa0054260 AT4G26440.1 33.628 113 64 4 97 204 179 285 5.51e-11 62.8
Msa0054260 AT3G58710.2 37.634 93 58 0 67 159 41 133 8.87e-14 69.7
Msa0054260 AT3G58710.1 47.619 63 33 0 97 159 72 134 1.08e-13 69.3
Msa0054260 AT2G21900.1 38.462 78 47 1 80 157 93 169 1.37e-13 68.2
Msa0054260 AT4G39410.1 43.077 65 36 1 94 158 221 284 1.72e-13 69.3
Msa0054260 AT2G34830.1 43.939 66 37 0 93 158 212 277 1.81e-13 69.7
Msa0054260 AT2G34830.2 43.939 66 37 0 93 158 221 286 1.98e-13 69.7
Msa0054260 AT1G30650.1 45.312 64 35 0 93 156 214 277 4.04e-13 68.9
Msa0054260 AT5G43290.1 43.077 65 36 1 89 153 107 170 6.48e-13 67.4
Msa0054260 AT5G64810.1 41.667 60 34 1 94 153 108 166 7.19e-13 65.9
Msa0054260 AT4G01250.1 41.176 85 49 1 97 180 129 213 1.15e-12 66.6
Msa0054260 AT5G52830.1 46.667 60 32 0 97 156 166 225 3.02e-12 65.9
Msa0054260 AT4G23550.1 41.270 63 37 0 94 156 138 200 3.41e-12 65.5
Msa0054260 AT5G45050.4 45.000 60 33 0 97 156 1042 1101 9.86e-12 65.1
Msa0054260 AT5G45050.1 45.000 60 33 0 97 156 1181 1240 1.04e-11 65.1
Msa0054260 AT5G45050.2 45.000 60 33 0 97 156 1153 1212 1.07e-11 65.1
Msa0054260 AT2G46400.1 37.000 100 56 3 80 177 90 184 6.44e-11 61.6
Msa0054260 AT4G12020.6 31.731 104 69 2 87 190 459 560 7.17e-11 62.8
Msa0054260 AT4G12020.8 31.731 104 69 2 87 190 459 560 7.17e-11 62.8
Msa0054260 AT4G12020.7 31.731 104 69 2 87 190 459 560 7.58e-11 62.4
Msa0054260 AT4G12020.1 31.731 104 69 2 87 190 459 560 7.80e-11 62.4
Msa0054260 AT4G12020.9 31.731 104 69 2 87 190 459 560 7.80e-11 62.4
Msa0054260 AT4G12020.10 31.731 104 69 2 87 190 459 560 8.28e-11 62.4
Msa0054260 AT4G12020.3 31.731 104 69 2 87 190 459 560 8.36e-11 62.4
Msa0054260 AT4G12020.4 31.731 104 69 2 87 190 459 560 8.44e-11 62.4
Msa0054260 AT4G12020.5 31.731 104 69 2 87 190 392 493 8.57e-11 62.4
Msa0054260 AT4G12020.11 31.731 104 69 2 87 190 459 560 9.00e-11 62.4
Msa0054260 AT4G12020.2 31.731 104 69 2 87 190 459 560 9.09e-11 62.4

Find 59 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTAGTTGTCGTGCGTTTA+TGG 0.152251 1_2:-8993595 None:intergenic
AATTCTTTACACTTGTATTT+TGG 0.191740 1_2:-8993368 None:intergenic
ACAAGTTCAAATCATCAAAT+TGG 0.204407 1_2:+8992310 Msa0054260:CDS
ATAAGCACTTGGAGACTATT+TGG 0.219634 1_2:+8993519 Msa0054260:three_prime_UTR
GAAAATTTACTTGCGACGTT+TGG 0.274537 1_2:+8993468 Msa0054260:three_prime_UTR
TTATGGAAATAAGTTGAAAA+TGG 0.276393 1_2:-8993578 None:intergenic
CATACCAAACTTTCATCATT+AGG 0.285634 1_2:-8992421 None:intergenic
GATGGTTTAAATGACTCATT+AGG 0.290756 1_2:-8993048 None:intergenic
TTAGAGATTGATGAACCTTT+AGG 0.306541 1_2:-8993081 None:intergenic
CTTCTCCTAGAGCTTACTTT+AGG 0.314347 1_2:+8992745 Msa0054260:CDS
TGAAGTCAGGATCTTTGATT+AGG 0.319072 1_2:-8993221 None:intergenic
AAATCTCGATTTGAATCTTT+CGG 0.326816 1_2:+8993308 Msa0054260:CDS
CTCACAAAGTCTAGTATTTG+TGG 0.333230 1_2:-8993139 None:intergenic
AATAAGTTGAAAATGGCTTA+TGG 0.337085 1_2:-8993571 None:intergenic
CGAAGAGATGAACTCAAATA+AGG 0.349662 1_2:-8993495 None:intergenic
CCTTGTTGATCTCTTGAAGA+TGG 0.350551 1_2:-8992273 None:intergenic
TCAACCTAATGATGAAAGTT+TGG 0.350703 1_2:+8992417 Msa0054260:CDS
GGCTATCAATGGAGGAAGTA+TGG 0.366288 1_2:+8992699 Msa0054260:CDS
AAAATTTACTTGCGACGTTT+GGG 0.370540 1_2:+8993469 Msa0054260:three_prime_UTR
TCTAGGAGAAGCATTGTCTT+TGG 0.371896 1_2:-8992733 None:intergenic
TCTTTGTCATTCAATGTTGT+TGG 0.386703 1_2:-8993114 None:intergenic
TAAGCACTTGGAGACTATTT+GGG 0.390860 1_2:+8993520 Msa0054260:three_prime_UTR
ACTTAGATAGTATCAAAATA+TGG 0.392382 1_2:+8993401 Msa0054260:three_prime_UTR
CTTGTTGATCTCTTGAAGAT+GGG 0.396728 1_2:-8992272 None:intergenic
AGCTGTTATAATGGATGAAA+AGG 0.418939 1_2:+8991985 None:intergenic
CTTTCGGAGGAGTGAAATGA+AGG 0.425821 1_2:+8993324 Msa0054260:exon
GAAGTCAGGATCTTTGATTA+GGG 0.432423 1_2:-8993220 None:intergenic
CAAGTTCAAATCATCAAATT+GGG 0.453217 1_2:+8992311 Msa0054260:CDS
ATCCTTGTTGCAACATATGA+TGG 0.459740 1_2:+8993006 Msa0054260:CDS
GCTAATGCTGCAGTGAAGTC+AGG 0.465446 1_2:-8993234 None:intergenic
ATGGTTTAAATGACTCATTA+GGG 0.465681 1_2:-8993047 None:intergenic
ATGGCTTATGGACATGTCAT+TGG 0.470297 1_2:-8993559 None:intergenic
ATGGAGGAAGTATGGTCAAA+AGG 0.476669 1_2:+8992707 Msa0054260:CDS
TGCTGGGCAACTAGGAGCCA+TGG 0.478382 1_2:-8992772 None:intergenic
CCATCTTCATCCACACCTAA+AGG 0.490427 1_2:+8993066 Msa0054260:CDS
AATATATAGATAATAAAAGA+TGG 0.494453 1_2:+8992678 Msa0054260:intron
CATCTCTTCGTATAAGCACT+TGG 0.497104 1_2:+8993508 Msa0054260:three_prime_UTR
AGAGTTACAACAAGTGAAAG+AGG 0.509069 1_2:+8992189 Msa0054260:CDS
AGCTTACTTTAGGTGCTCCA+TGG 0.512350 1_2:+8992755 Msa0054260:CDS
GAGAATGTCATGCAACAGTT+TGG 0.514761 1_2:+8993159 Msa0054260:CDS
CTTATGTTCTTGATCAGTGA+CGG 0.524464 1_2:-8993274 None:intergenic
GTCATGCAACAGTTTGGCTA+TGG 0.529941 1_2:+8993165 Msa0054260:CDS
TAATAAAAGATGGCTATCAA+TGG 0.531094 1_2:+8992688 Msa0054260:CDS
CCTTTAGGTGTGGATGAAGA+TGG 0.531585 1_2:-8993066 None:intergenic
TCAACAAGGAAGGACACAAA+GGG 0.547154 1_2:+8992287 Msa0054260:CDS
GAGCACCTAAAGTAAGCTCT+AGG 0.566462 1_2:-8992750 None:intergenic
GTTCGTACAAAGACTTGTAG+TGG 0.571338 1_2:-8992394 None:intergenic
TGCAACAGTTTGGCTATGGA+AGG 0.583957 1_2:+8993169 Msa0054260:CDS
CTCCATCATATGTTGCAACA+AGG 0.587646 1_2:-8993008 None:intergenic
ATCAACAAGGAAGGACACAA+AGG 0.597349 1_2:+8992286 Msa0054260:CDS
CTTCAAGAGATCAACAAGGA+AGG 0.612726 1_2:+8992277 Msa0054260:CDS
TCTCGATTTGAATCTTTCGG+AGG 0.620338 1_2:+8993311 Msa0054260:CDS
TAAAAGATGGCTATCAATGG+AGG 0.624488 1_2:+8992691 Msa0054260:CDS
GATTGATGAACCTTTAGGTG+TGG 0.626271 1_2:-8993076 None:intergenic
ATGACTCATTAGGGACACCA+TGG 0.648715 1_2:-8993038 None:intergenic
AGTTTAGTGATATCACCGAA+AGG 0.649261 1_2:+8993442 Msa0054260:three_prime_UTR
TATGATGGAGAGCACAACCA+TGG 0.692151 1_2:+8993021 Msa0054260:CDS
CCATCTTCAAGAGATCAACA+AGG 0.701780 1_2:+8992273 Msa0054260:CDS
GATCAAGAACATAAGCGACA+AGG 0.725331 1_2:+8993282 Msa0054260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATAGATAATAAAAGA+TGG + chr1_2:8992678-8992697 Msa0054260:intron 10.0%
!! AATATATAGATAATAAAAGA+TGG + chr1_2:8992678-8992697 Msa0054260:intron 10.0%
!! AATTTCAGAAGAAATAAATT+TGG + chr1_2:8992614-8992633 Msa0054260:intron 15.0%
!! TATGTATATGATTTATAGAA+AGG + chr1_2:8992861-8992880 Msa0054260:intron 15.0%
!! ATTATTCTATGAAAATATTG+TGG + chr1_2:8992916-8992935 Msa0054260:intron 15.0%
!! TAAAGTTAATAAATGAAGTA+AGG - chr1_2:8992958-8992977 None:intergenic 15.0%
!! TTACTTCATTTATTAACTTT+AGG + chr1_2:8992957-8992976 Msa0054260:intron 15.0%
!! AATTTCAGAAGAAATAAATT+TGG + chr1_2:8992614-8992633 Msa0054260:intron 15.0%
!! TATGTATATGATTTATAGAA+AGG + chr1_2:8992861-8992880 Msa0054260:intron 15.0%
!! ATTATTCTATGAAAATATTG+TGG + chr1_2:8992916-8992935 Msa0054260:intron 15.0%
!! TAAAGTTAATAAATGAAGTA+AGG - chr1_2:8992958-8992977 None:intergenic 15.0%
!! TTACTTCATTTATTAACTTT+AGG + chr1_2:8992957-8992976 Msa0054260:intron 15.0%
!! GGTTTCTTATTATACTTAAT+AGG + chr1_2:8992020-8992039 Msa0054260:intron 20.0%
!!! ATCTTCTAATTTTGCTTTTT+AGG + chr1_2:8992088-8992107 Msa0054260:intron 20.0%
!!! TTAACAATTTTGATGTGTTA+AGG + chr1_2:8992150-8992169 Msa0054260:intron 20.0%
!!! AATTCTTTACACTTGTATTT+TGG - chr1_2:8993371-8993390 None:intergenic 20.0%
!! ACTTAGATAGTATCAAAATA+TGG + chr1_2:8993401-8993420 Msa0054260:three_prime_UTR 20.0%
!!! AAGTAAATTTTCTTTCCTTT+CGG - chr1_2:8993460-8993479 None:intergenic 20.0%
!!! TTATGGAAATAAGTTGAAAA+TGG - chr1_2:8993581-8993600 None:intergenic 20.0%
!! GGTTTCTTATTATACTTAAT+AGG + chr1_2:8992020-8992039 Msa0054260:intron 20.0%
!!! ATCTTCTAATTTTGCTTTTT+AGG + chr1_2:8992088-8992107 Msa0054260:intron 20.0%
!!! TTAACAATTTTGATGTGTTA+AGG + chr1_2:8992150-8992169 Msa0054260:intron 20.0%
!!! AATTCTTTACACTTGTATTT+TGG - chr1_2:8993371-8993390 None:intergenic 20.0%
!! ACTTAGATAGTATCAAAATA+TGG + chr1_2:8993401-8993420 Msa0054260:three_prime_UTR 20.0%
!!! AAGTAAATTTTCTTTCCTTT+CGG - chr1_2:8993460-8993479 None:intergenic 20.0%
!!! TTATGGAAATAAGTTGAAAA+TGG - chr1_2:8993581-8993600 None:intergenic 20.0%
! ATGAAAAGGTAACTAATTAG+TGG + chr1_2:8991999-8992018 Msa0054260:intron 25.0%
! ACAAGTTCAAATCATCAAAT+TGG + chr1_2:8992310-8992329 Msa0054260:CDS 25.0%
! CAAGTTCAAATCATCAAATT+GGG + chr1_2:8992311-8992330 Msa0054260:CDS 25.0%
!! AATGAGTGATATGATTTTAG+TGG - chr1_2:8992518-8992537 None:intergenic 25.0%
!! TCTGAAATTTATGTCTAGAA+AGG - chr1_2:8992603-8992622 None:intergenic 25.0%
! TAATAAAAGATGGCTATCAA+TGG + chr1_2:8992688-8992707 Msa0054260:CDS 25.0%
! TGATTTATAGAAAGGTTACA+AGG + chr1_2:8992869-8992888 Msa0054260:intron 25.0%
! AAGGTTACAAGGTTATTATA+TGG + chr1_2:8992880-8992899 Msa0054260:intron 25.0%
! TACAAAAATGCATACATGAT+AGG + chr1_2:8992980-8992999 Msa0054260:CDS 25.0%
! ATGGTTTAAATGACTCATTA+GGG - chr1_2:8993050-8993069 None:intergenic 25.0%
!! AAATCTCGATTTGAATCTTT+CGG + chr1_2:8993308-8993327 Msa0054260:CDS 25.0%
!! TTTTGATACTATCTAAGTAC+TGG - chr1_2:8993399-8993418 None:intergenic 25.0%
!! AATAAGTTGAAAATGGCTTA+TGG - chr1_2:8993574-8993593 None:intergenic 25.0%
! ATGAAAAGGTAACTAATTAG+TGG + chr1_2:8991999-8992018 Msa0054260:intron 25.0%
! ACAAGTTCAAATCATCAAAT+TGG + chr1_2:8992310-8992329 Msa0054260:CDS 25.0%
! CAAGTTCAAATCATCAAATT+GGG + chr1_2:8992311-8992330 Msa0054260:CDS 25.0%
!! AATGAGTGATATGATTTTAG+TGG - chr1_2:8992518-8992537 None:intergenic 25.0%
!! TCTGAAATTTATGTCTAGAA+AGG - chr1_2:8992603-8992622 None:intergenic 25.0%
! TAATAAAAGATGGCTATCAA+TGG + chr1_2:8992688-8992707 Msa0054260:CDS 25.0%
! TGATTTATAGAAAGGTTACA+AGG + chr1_2:8992869-8992888 Msa0054260:intron 25.0%
! AAGGTTACAAGGTTATTATA+TGG + chr1_2:8992880-8992899 Msa0054260:intron 25.0%
! TACAAAAATGCATACATGAT+AGG + chr1_2:8992980-8992999 Msa0054260:CDS 25.0%
! ATGGTTTAAATGACTCATTA+GGG - chr1_2:8993050-8993069 None:intergenic 25.0%
!! AAATCTCGATTTGAATCTTT+CGG + chr1_2:8993308-8993327 Msa0054260:CDS 25.0%
!! TTTTGATACTATCTAAGTAC+TGG - chr1_2:8993399-8993418 None:intergenic 25.0%
!! AATAAGTTGAAAATGGCTTA+TGG - chr1_2:8993574-8993593 None:intergenic 25.0%
!! ACAATTTTGATGTGTTAAGG+TGG + chr1_2:8992153-8992172 Msa0054260:intron 30.0%
! CTTTTGCTTGAATCAATGTT+AGG - chr1_2:8992343-8992362 None:intergenic 30.0%
TCAACCTAATGATGAAAGTT+TGG + chr1_2:8992417-8992436 Msa0054260:CDS 30.0%
CATACCAAACTTTCATCATT+AGG - chr1_2:8992424-8992443 None:intergenic 30.0%
!!! CATATACCTTCTTTTTTGCT+GGG - chr1_2:8992791-8992810 None:intergenic 30.0%
GATGGTTTAAATGACTCATT+AGG - chr1_2:8993051-8993070 None:intergenic 30.0%
TTAGAGATTGATGAACCTTT+AGG - chr1_2:8993084-8993103 None:intergenic 30.0%
TCTTTGTCATTCAATGTTGT+TGG - chr1_2:8993117-8993136 None:intergenic 30.0%
AAAATTTACTTGCGACGTTT+GGG + chr1_2:8993469-8993488 Msa0054260:three_prime_UTR 30.0%
!! ACAATTTTGATGTGTTAAGG+TGG + chr1_2:8992153-8992172 Msa0054260:intron 30.0%
! CTTTTGCTTGAATCAATGTT+AGG - chr1_2:8992343-8992362 None:intergenic 30.0%
TCAACCTAATGATGAAAGTT+TGG + chr1_2:8992417-8992436 Msa0054260:CDS 30.0%
CATACCAAACTTTCATCATT+AGG - chr1_2:8992424-8992443 None:intergenic 30.0%
!!! CATATACCTTCTTTTTTGCT+GGG - chr1_2:8992791-8992810 None:intergenic 30.0%
GATGGTTTAAATGACTCATT+AGG - chr1_2:8993051-8993070 None:intergenic 30.0%
TTAGAGATTGATGAACCTTT+AGG - chr1_2:8993084-8993103 None:intergenic 30.0%
TCTTTGTCATTCAATGTTGT+TGG - chr1_2:8993117-8993136 None:intergenic 30.0%
AAAATTTACTTGCGACGTTT+GGG + chr1_2:8993469-8993488 Msa0054260:three_prime_UTR 30.0%
AGAGTTACAACAAGTGAAAG+AGG + chr1_2:8992189-8992208 Msa0054260:CDS 35.0%
CTTGTTGATCTCTTGAAGAT+GGG - chr1_2:8992275-8992294 None:intergenic 35.0%
TAAAAGATGGCTATCAATGG+AGG + chr1_2:8992691-8992710 Msa0054260:CDS 35.0%
!!! GCATATACCTTCTTTTTTGC+TGG - chr1_2:8992792-8992811 None:intergenic 35.0%
ATCCTTGTTGCAACATATGA+TGG + chr1_2:8993006-8993025 Msa0054260:CDS 35.0%
CTCACAAAGTCTAGTATTTG+TGG - chr1_2:8993142-8993161 None:intergenic 35.0%
GAAGTCAGGATCTTTGATTA+GGG - chr1_2:8993223-8993242 None:intergenic 35.0%
TGAAGTCAGGATCTTTGATT+AGG - chr1_2:8993224-8993243 None:intergenic 35.0%
CTTATGTTCTTGATCAGTGA+CGG - chr1_2:8993277-8993296 None:intergenic 35.0%
AGTTTAGTGATATCACCGAA+AGG + chr1_2:8993442-8993461 Msa0054260:three_prime_UTR 35.0%
GAAAATTTACTTGCGACGTT+TGG + chr1_2:8993468-8993487 Msa0054260:three_prime_UTR 35.0%
CGAAGAGATGAACTCAAATA+AGG - chr1_2:8993498-8993517 None:intergenic 35.0%
ATAAGCACTTGGAGACTATT+TGG + chr1_2:8993519-8993538 Msa0054260:three_prime_UTR 35.0%
TAAGCACTTGGAGACTATTT+GGG + chr1_2:8993520-8993539 Msa0054260:three_prime_UTR 35.0%
AGAGTTACAACAAGTGAAAG+AGG + chr1_2:8992189-8992208 Msa0054260:CDS 35.0%
CTTGTTGATCTCTTGAAGAT+GGG - chr1_2:8992275-8992294 None:intergenic 35.0%
TAAAAGATGGCTATCAATGG+AGG + chr1_2:8992691-8992710 Msa0054260:CDS 35.0%
!!! GCATATACCTTCTTTTTTGC+TGG - chr1_2:8992792-8992811 None:intergenic 35.0%
ATCCTTGTTGCAACATATGA+TGG + chr1_2:8993006-8993025 Msa0054260:CDS 35.0%
CTCACAAAGTCTAGTATTTG+TGG - chr1_2:8993142-8993161 None:intergenic 35.0%
GAAGTCAGGATCTTTGATTA+GGG - chr1_2:8993223-8993242 None:intergenic 35.0%
TGAAGTCAGGATCTTTGATT+AGG - chr1_2:8993224-8993243 None:intergenic 35.0%
CTTATGTTCTTGATCAGTGA+CGG - chr1_2:8993277-8993296 None:intergenic 35.0%
AGTTTAGTGATATCACCGAA+AGG + chr1_2:8993442-8993461 Msa0054260:three_prime_UTR 35.0%
GAAAATTTACTTGCGACGTT+TGG + chr1_2:8993468-8993487 Msa0054260:three_prime_UTR 35.0%
CGAAGAGATGAACTCAAATA+AGG - chr1_2:8993498-8993517 None:intergenic 35.0%
ATAAGCACTTGGAGACTATT+TGG + chr1_2:8993519-8993538 Msa0054260:three_prime_UTR 35.0%
TAAGCACTTGGAGACTATTT+GGG + chr1_2:8993520-8993539 Msa0054260:three_prime_UTR 35.0%
CCTTGTTGATCTCTTGAAGA+TGG - chr1_2:8992276-8992295 None:intergenic 40.0%
CCATCTTCAAGAGATCAACA+AGG + chr1_2:8992273-8992292 Msa0054260:CDS 40.0%
CTTCAAGAGATCAACAAGGA+AGG + chr1_2:8992277-8992296 Msa0054260:CDS 40.0%
ATCAACAAGGAAGGACACAA+AGG + chr1_2:8992286-8992305 Msa0054260:CDS 40.0%
TCAACAAGGAAGGACACAAA+GGG + chr1_2:8992287-8992306 Msa0054260:CDS 40.0%
GTTCGTACAAAGACTTGTAG+TGG - chr1_2:8992397-8992416 None:intergenic 40.0%
! ATGGAGGAAGTATGGTCAAA+AGG + chr1_2:8992707-8992726 Msa0054260:CDS 40.0%
!! TCTAGGAGAAGCATTGTCTT+TGG - chr1_2:8992736-8992755 None:intergenic 40.0%
CTTCTCCTAGAGCTTACTTT+AGG + chr1_2:8992745-8992764 Msa0054260:CDS 40.0%
!!! TTCTTTTTTGCTGGGCAACT+AGG - chr1_2:8992783-8992802 None:intergenic 40.0%
TAGTTGCCCAGCAAAAAAGA+AGG + chr1_2:8992782-8992801 Msa0054260:CDS 40.0%
CTCCATCATATGTTGCAACA+AGG - chr1_2:8993011-8993030 None:intergenic 40.0%
GATTGATGAACCTTTAGGTG+TGG - chr1_2:8993079-8993098 None:intergenic 40.0%
GAGAATGTCATGCAACAGTT+TGG + chr1_2:8993159-8993178 Msa0054260:CDS 40.0%
GATCAAGAACATAAGCGACA+AGG + chr1_2:8993282-8993301 Msa0054260:CDS 40.0%
! TCTCGATTTGAATCTTTCGG+AGG + chr1_2:8993311-8993330 Msa0054260:CDS 40.0%
CATCTCTTCGTATAAGCACT+TGG + chr1_2:8993508-8993527 Msa0054260:three_prime_UTR 40.0%
ATGGCTTATGGACATGTCAT+TGG - chr1_2:8993562-8993581 None:intergenic 40.0%
CATTAGTTGTCGTGCGTTTA+TGG - chr1_2:8993598-8993617 None:intergenic 40.0%
CCTTGTTGATCTCTTGAAGA+TGG - chr1_2:8992276-8992295 None:intergenic 40.0%
CCATCTTCAAGAGATCAACA+AGG + chr1_2:8992273-8992292 Msa0054260:CDS 40.0%
CTTCAAGAGATCAACAAGGA+AGG + chr1_2:8992277-8992296 Msa0054260:CDS 40.0%
ATCAACAAGGAAGGACACAA+AGG + chr1_2:8992286-8992305 Msa0054260:CDS 40.0%
TCAACAAGGAAGGACACAAA+GGG + chr1_2:8992287-8992306 Msa0054260:CDS 40.0%
GTTCGTACAAAGACTTGTAG+TGG - chr1_2:8992397-8992416 None:intergenic 40.0%
! ATGGAGGAAGTATGGTCAAA+AGG + chr1_2:8992707-8992726 Msa0054260:CDS 40.0%
!! TCTAGGAGAAGCATTGTCTT+TGG - chr1_2:8992736-8992755 None:intergenic 40.0%
CTTCTCCTAGAGCTTACTTT+AGG + chr1_2:8992745-8992764 Msa0054260:CDS 40.0%
!!! TTCTTTTTTGCTGGGCAACT+AGG - chr1_2:8992783-8992802 None:intergenic 40.0%
TAGTTGCCCAGCAAAAAAGA+AGG + chr1_2:8992782-8992801 Msa0054260:CDS 40.0%
CTCCATCATATGTTGCAACA+AGG - chr1_2:8993011-8993030 None:intergenic 40.0%
GATTGATGAACCTTTAGGTG+TGG - chr1_2:8993079-8993098 None:intergenic 40.0%
GAGAATGTCATGCAACAGTT+TGG + chr1_2:8993159-8993178 Msa0054260:CDS 40.0%
GATCAAGAACATAAGCGACA+AGG + chr1_2:8993282-8993301 Msa0054260:CDS 40.0%
! TCTCGATTTGAATCTTTCGG+AGG + chr1_2:8993311-8993330 Msa0054260:CDS 40.0%
CATCTCTTCGTATAAGCACT+TGG + chr1_2:8993508-8993527 Msa0054260:three_prime_UTR 40.0%
ATGGCTTATGGACATGTCAT+TGG - chr1_2:8993562-8993581 None:intergenic 40.0%
CATTAGTTGTCGTGCGTTTA+TGG - chr1_2:8993598-8993617 None:intergenic 40.0%
! TGTAGTGGCTTTTGTGCTGT+GGG - chr1_2:8992382-8992401 None:intergenic 45.0%
! TTGTAGTGGCTTTTGTGCTG+TGG - chr1_2:8992383-8992402 None:intergenic 45.0%
GGCTATCAATGGAGGAAGTA+TGG + chr1_2:8992699-8992718 Msa0054260:CDS 45.0%
GAGCACCTAAAGTAAGCTCT+AGG - chr1_2:8992753-8992772 None:intergenic 45.0%
AGCTTACTTTAGGTGCTCCA+TGG + chr1_2:8992755-8992774 Msa0054260:CDS 45.0%
! TATGATGGAGAGCACAACCA+TGG + chr1_2:8993021-8993040 Msa0054260:CDS 45.0%
ATGACTCATTAGGGACACCA+TGG - chr1_2:8993041-8993060 None:intergenic 45.0%
CCTTTAGGTGTGGATGAAGA+TGG - chr1_2:8993069-8993088 None:intergenic 45.0%
CCATCTTCATCCACACCTAA+AGG + chr1_2:8993066-8993085 Msa0054260:CDS 45.0%
GTCATGCAACAGTTTGGCTA+TGG + chr1_2:8993165-8993184 Msa0054260:CDS 45.0%
TGCAACAGTTTGGCTATGGA+AGG + chr1_2:8993169-8993188 Msa0054260:CDS 45.0%
CTTTCGGAGGAGTGAAATGA+AGG + chr1_2:8993324-8993343 Msa0054260:exon 45.0%
! TGTAGTGGCTTTTGTGCTGT+GGG - chr1_2:8992382-8992401 None:intergenic 45.0%
! TTGTAGTGGCTTTTGTGCTG+TGG - chr1_2:8992383-8992402 None:intergenic 45.0%
GGCTATCAATGGAGGAAGTA+TGG + chr1_2:8992699-8992718 Msa0054260:CDS 45.0%
GAGCACCTAAAGTAAGCTCT+AGG - chr1_2:8992753-8992772 None:intergenic 45.0%
AGCTTACTTTAGGTGCTCCA+TGG + chr1_2:8992755-8992774 Msa0054260:CDS 45.0%
! TATGATGGAGAGCACAACCA+TGG + chr1_2:8993021-8993040 Msa0054260:CDS 45.0%
ATGACTCATTAGGGACACCA+TGG - chr1_2:8993041-8993060 None:intergenic 45.0%
CCTTTAGGTGTGGATGAAGA+TGG - chr1_2:8993069-8993088 None:intergenic 45.0%
CCATCTTCATCCACACCTAA+AGG + chr1_2:8993066-8993085 Msa0054260:CDS 45.0%
GTCATGCAACAGTTTGGCTA+TGG + chr1_2:8993165-8993184 Msa0054260:CDS 45.0%
TGCAACAGTTTGGCTATGGA+AGG + chr1_2:8993169-8993188 Msa0054260:CDS 45.0%
CTTTCGGAGGAGTGAAATGA+AGG + chr1_2:8993324-8993343 Msa0054260:exon 45.0%
!! TTAAAAAAAAAATTAAAACA+TGG - chr1_2:8992064-8992083 None:intergenic 5.0%
!! TTAAAAAAAAAATTAAAACA+TGG - chr1_2:8992064-8992083 None:intergenic 5.0%
GCTAATGCTGCAGTGAAGTC+AGG - chr1_2:8993237-8993256 None:intergenic 50.0%
GCTAATGCTGCAGTGAAGTC+AGG - chr1_2:8993237-8993256 None:intergenic 50.0%
TGCTGGGCAACTAGGAGCCA+TGG - chr1_2:8992775-8992794 None:intergenic 60.0%
TGCTGGGCAACTAGGAGCCA+TGG - chr1_2:8992775-8992794 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 8991995 8993632 8991995 ID=Msa0054260;Name=Msa0054260
chr1_2 mRNA 8991995 8993632 8991995 ID=Msa0054260-mRNA-1;Parent=Msa0054260;Name=Msa0054260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.66|0.5|0.75|1|1|4|294|251
chr1_2 exon 8991995 8992006 8991995 ID=Msa0054260-mRNA-1:exon:3230;Parent=Msa0054260-mRNA-1
chr1_2 exon 8992172 8992438 8992172 ID=Msa0054260-mRNA-1:exon:3231;Parent=Msa0054260-mRNA-1
chr1_2 exon 8992687 8992803 8992687 ID=Msa0054260-mRNA-1:exon:3232;Parent=Msa0054260-mRNA-1
chr1_2 exon 8992979 8993632 8992979 ID=Msa0054260-mRNA-1:exon:3233;Parent=Msa0054260-mRNA-1
chr1_2 CDS 8991995 8992006 8991995 ID=Msa0054260-mRNA-1:cds;Parent=Msa0054260-mRNA-1
chr1_2 CDS 8992172 8992438 8992172 ID=Msa0054260-mRNA-1:cds;Parent=Msa0054260-mRNA-1
chr1_2 CDS 8992687 8992803 8992687 ID=Msa0054260-mRNA-1:cds;Parent=Msa0054260-mRNA-1
chr1_2 CDS 8992979 8993338 8992979 ID=Msa0054260-mRNA-1:cds;Parent=Msa0054260-mRNA-1
chr1_2 three_prime_UTR 8993339 8993632 8993339 ID=Msa0054260-mRNA-1:three_prime_utr;Parent=Msa0054260-mRNA-1
Gene Sequence

>Msa0054260

ATGGATGAAAAGGTGGAAACTCTTGAATTAGAGTTACAACAAGTGAAAGAGGAAAACAATACTCTAAGATTCATGCTTGAAGTTATGAATATCAAGTGTACAAAGCTTGAGTCCCATCTTCAAGAGATCAACAAGGAAGGACACAAAGGGACAAGTTCAAATCATCAAATTGGGTCAATACCTAACATTGATTCAAGCAAAAGAGCAAGACTAGAGATTCCCACAGCACAAAAGCCACTACAAGTCTTTGTACGAACTCAACCTAATGATGAAAGTTTGATAATAAAAGATGGCTATCAATGGAGGAAGTATGGTCAAAAGGTTACCAAAGACAATGCTTCTCCTAGAGCTTACTTTAGGTGCTCCATGGCTCCTAGTTGCCCAGCAAAAAAGAAGGTACAAAAATGCATACATGATAGGTCTATCCTTGTTGCAACATATGATGGAGAGCACAACCATGGTGTCCCTAATGAGTCATTTAAACCATCTTCATCCACACCTAAAGGTTCATCAATCTCTAATAATAAATTACCAACAACATTGAATGACAAAGAAGCCACAAATACTAGACTTTGTGAGAATGTCATGCAACAGTTTGGCTATGGAAGGCACATTAAAATTGAAGAATATGCAAGTTCCCTAATCAAAGATCCTGACTTCACTGCAGCATTAGCTGAAGCAGTTGCTCGAACCGTCACTGATCAAGAACATAAGCGACAAGGTCTAAATCTCGATTTGAATCTTTCGGAGGAGTGA
Protein sequence

>Msa0054260

MDEKVETLELELQQVKEENNTLRFMLEVMNIKCTKLESHLQEINKEGHKGTSSNHQIGSIPNIDSSKRARLEIPTAQKPLQVFVRTQPNDESLIIKDGYQWRKYGQKVTKDNASPRAYFRCSMAPSCPAKKKVQKCIHDRSILVATYDGEHNHGVPNESFKPSSSTPKGSSISNNKLPTTLNDKEATNTRLCENVMQQFGYGRHIKIEEYASSLIKDPDFTAALAEAVARTVTDQEHKRQGLNLDLNLSEE*