AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0157040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0157040 MtrunA17_Chr1g0168631 98.807 503 6 0 1 503 1 503 0.0 1013
Msa0157040 MtrunA17_Chr7g0262361 74.948 483 119 2 1 482 1 482 0.0 736
Msa0157040 MtrunA17_Chr1g0189971 74.359 507 118 5 1 498 1 504 0.0 734
Msa0157040 MtrunA17_Chr7g0272721 73.444 482 126 2 1 481 1 481 0.0 719
Msa0157040 MtrunA17_Chr3g0104661 66.372 452 147 4 45 493 11 460 0.0 594
Msa0157040 MtrunA17_Chr7g0274111 27.007 411 239 13 113 501 100 471 1.47e-23 103
Msa0157040 MtrunA17_Chr1g0163571 27.097 465 272 16 48 482 24 451 9.66e-23 101
Msa0157040 MtrunA17_Chr7g0243071 26.638 473 280 16 48 485 22 462 1.06e-18 89.0
Msa0157040 MtrunA17_Chr8g0385081 23.958 480 305 11 48 496 29 479 7.98e-17 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0157040 AT4G13510.1 80.478 502 88 3 5 499 2 500 0.0 828
Msa0157040 AT3G24300.1 77.465 497 99 4 6 497 7 495 0.0 779
Msa0157040 AT3G24290.1 79.237 472 95 1 6 477 7 475 0.0 769
Msa0157040 AT1G64780.1 76.190 483 104 7 27 500 31 511 0.0 738
Msa0157040 AT4G28700.1 74.745 491 116 4 5 489 6 494 0.0 712
Msa0157040 AT2G38290.1 27.233 459 283 13 48 485 20 448 5.50e-23 102
Msa0157040 AT2G38290.2 27.809 356 221 10 136 485 7 332 1.42e-18 87.8

Find 190 sgRNAs with CRISPR-Local

Find 466 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGACCCTATGGGTTATTTA+TGG 0.176472 1_4:-23906264 Msa0157040:CDS
GGCACATGTGATACAAATTT+TGG 0.187812 1_4:-23906219 Msa0157040:CDS
TCACATGTTTGGTGCCATTT+AGG 0.202219 1_4:-23905681 Msa0157040:three_prime_UTR
TGGTGGTATTGCTGGTTTAT+GGG 0.202357 1_4:-23906985 Msa0157040:CDS
AGTGCCTCTCTTGTTGTTCT+TGG 0.219537 1_4:-23906891 Msa0157040:CDS
CACATGTTTGGTGCCATTTA+GGG 0.221541 1_4:-23905680 Msa0157040:three_prime_UTR
TTGGTGGTATTGCTGGTTTA+TGG 0.237577 1_4:-23906986 Msa0157040:CDS
CCAGGTTTATCCGGGTAAAC+TGG 0.249185 1_4:-23906288 Msa0157040:CDS
CTGTGGTCTCCCACCCTAAA+TGG 0.255571 1_4:+23905667 None:intergenic
TTCATTGGAAAACATTTCTT+TGG 0.268354 1_4:-23907287 Msa0157040:CDS
ATTCTCAGTCCTTATAATTC+AGG 0.269091 1_4:-23906813 Msa0157040:intron
CTGTGGTTTCTCATTGGTTT+TGG 0.272044 1_4:-23907103 Msa0157040:CDS
GCTTCGGCGTTGGTGGCGTT+GGG 0.277122 1_4:+23907575 None:intergenic
TTCTTGGCACTTTCATGCTT+TGG 0.277934 1_4:-23906875 Msa0157040:CDS
GTAATAATTTAAATTTGTTT+TGG 0.287931 1_4:-23905967 Msa0157040:three_prime_UTR
GGTGGTGGAGGGAAATTATT+AGG 0.301790 1_4:-23906242 Msa0157040:CDS
CATTGTAATTTATATTTGAT+TGG 0.318042 1_4:-23905872 Msa0157040:three_prime_UTR
GACTAATGTAATGTTGGATT+TGG 0.318944 1_4:-23905772 Msa0157040:three_prime_UTR
CATATGGTTGGTGGTATTGC+TGG 0.320936 1_4:-23906993 Msa0157040:CDS
ACACCTTCAAATGGTTTCAT+TGG 0.325076 1_4:-23907302 Msa0157040:CDS
GGCTTCGGCGTTGGTGGCGT+TGG 0.336256 1_4:+23907574 None:intergenic
CTTATTGAAGGTCCGCGAAT+TGG 0.341909 1_4:-23906957 Msa0157040:CDS
ATTGGACGGTTCGATCATTC+TGG 0.345994 1_4:-23906939 Msa0157040:CDS
TTTACCCTGTGGTTTCTCAT+TGG 0.351616 1_4:-23907109 Msa0157040:CDS
CGACCCTATGGGTTATTTAT+GGG 0.352551 1_4:-23906263 Msa0157040:CDS
GATGAAATTTGCCGCGGCTT+CGG 0.353087 1_4:+23907559 None:intergenic
GGCACTTTCATGCTTTGGTT+TGG 0.354842 1_4:-23906870 Msa0157040:CDS
TGTTTGACACTGCTGTGAAC+TGG 0.360310 1_4:+23907531 None:intergenic
TGTAATTGTGCTGCTTCTAA+TGG 0.364233 1_4:+23906374 None:intergenic
TGGAGATAATGTGGAAAGTT+TGG 0.366658 1_4:-23905812 Msa0157040:three_prime_UTR
GATGAAGGATCACATAGAAA+TGG 0.373243 1_4:-23906056 Msa0157040:CDS
CTTTCATGCTTTGGTTTGGT+TGG 0.380571 1_4:-23906866 Msa0157040:CDS
TGGGTGGGTAAGTGCAACTA+TGG 0.381238 1_4:-23906189 Msa0157040:CDS
AAAGAGTAGCAGCAAGTGTT+AGG 0.389463 1_4:+23907736 None:intergenic
TGGCTCCGGTGTTGTTCATA+TGG 0.393312 1_4:-23907009 Msa0157040:CDS
GTATGTGAACCAGGTTTATC+CGG 0.405498 1_4:-23906297 Msa0157040:CDS
GGTAAACTGGGTCGACCCTA+TGG 0.406965 1_4:-23906275 Msa0157040:CDS
CGTTAGAGCTGCCGTGCAAC+CGG 0.414595 1_4:+23906592 None:intergenic
TCGCAGCTCGCGCAGTTCAT+CGG 0.418885 1_4:-23907599 Msa0157040:CDS
TGAAGATGAACTTGCGGGTA+TGG 0.421273 1_4:-23906117 Msa0157040:CDS
AGTTAACTACCTGAATTATA+AGG 0.425481 1_4:+23906804 None:intergenic
TCAACTGAAGATGAACTTGC+GGG 0.428559 1_4:-23906122 Msa0157040:CDS
AAAGAATTCTCTCCGGTCAC+TGG 0.431120 1_4:-23906556 Msa0157040:CDS
CGCCACCAACGCCGAAGCCG+CGG 0.431981 1_4:-23907570 Msa0157040:CDS
ATGCTTTGGTTTGGTTGGTA+TGG 0.433222 1_4:-23906861 Msa0157040:CDS
TGAGATTTGCTTCACATGTT+TGG 0.436604 1_4:-23905692 Msa0157040:three_prime_UTR
TACAATCACAAATCTGTAGT+TGG 0.437561 1_4:+23905987 None:intergenic
AGAATCTTGGTGAAGGAACC+AGG 0.441335 1_4:+23906831 None:intergenic
GTAAGCTGAGAATAGAAGAT+AGG 0.441751 1_4:+23907475 None:intergenic
ATTTGCCGCGGCTTCGGCGT+TGG 0.441756 1_4:+23907565 None:intergenic
CATTCCGGCAGCGACATGTT+TGG 0.442692 1_4:+23907629 None:intergenic
TACACGGTGGGTGTGGCGCG+TGG 0.444248 1_4:-23906355 Msa0157040:CDS
GGTTGGTATGGTTTCAACCC+TGG 0.447548 1_4:-23906849 Msa0157040:CDS
GGTGTTCCGTTGTAGAACCT+TGG 0.448411 1_4:-23906478 Msa0157040:CDS
AAAACATTTCTTTGGTCTGA+AGG 0.450771 1_4:-23907279 Msa0157040:CDS
GGGTTATTTATGGGTGGTGG+AGG 0.451374 1_4:-23906254 Msa0157040:CDS
TTTGTTGACTAATGTAATGT+TGG 0.452412 1_4:-23905778 Msa0157040:three_prime_UTR
TTGCTTCTTGGAAAATGTCT+TGG 0.456430 1_4:-23905726 Msa0157040:three_prime_UTR
TTTCCAATGAAACCATTTGA+AGG 0.457318 1_4:+23907299 None:intergenic
TGCCGCGGCTTCGGCGTTGG+TGG 0.461817 1_4:+23907568 None:intergenic
GTGTTCCGTTGTAGAACCTT+GGG 0.462761 1_4:-23906477 Msa0157040:CDS
CGACATGTTTGGTGGGTAGG+TGG 0.464856 1_4:+23907640 None:intergenic
ATTGGTCGTACATTACTTTG+TGG 0.465987 1_4:-23905854 Msa0157040:three_prime_UTR
TATGGGTTATTTATGGGTGG+TGG 0.467977 1_4:-23906257 Msa0157040:CDS
CAGCGACATGTTTGGTGGGT+AGG 0.469224 1_4:+23907637 None:intergenic
TTATTCAAAACAAAGAATAG+TGG 0.471377 1_4:+23906164 None:intergenic
ATGAAGGATCACATAGAAAT+GGG 0.473794 1_4:-23906055 Msa0157040:CDS
AACGTCCTCGACGCTGCTGC+TGG 0.476966 1_4:-23907368 Msa0157040:CDS
ATAAGCAAACCCACCATGTC+GGG 0.481927 1_4:+23906088 None:intergenic
ACACGGTGGGTGTGGCGCGT+GGG 0.483461 1_4:-23906354 Msa0157040:CDS
TCCGGCAGCGACATGTTTGG+TGG 0.484118 1_4:+23907632 None:intergenic
ATGGAGTGCGGTGGGGAGGA+CGG 0.485440 1_4:-23906633 Msa0157040:CDS
GGTGGTATTGCTGGTTTATG+GGG 0.486687 1_4:-23906984 Msa0157040:CDS
ATTTACTCATCGTTTCTCAC+AGG 0.487248 1_4:-23907137 Msa0157040:CDS
GGAGATAATGTGGAAAGTTT+GGG 0.487606 1_4:-23905811 Msa0157040:three_prime_UTR
TCCGGTGTTGTTCATATGGT+TGG 0.488732 1_4:-23907005 Msa0157040:CDS
CACGGTGGGTGTGGCGCGTG+GGG 0.489854 1_4:-23906353 Msa0157040:CDS
GCTTATGCTTATGAAGATGA+AGG 0.489963 1_4:-23906071 Msa0157040:CDS
GTTTGACACTGCTGTGAACT+GGG 0.490561 1_4:+23907532 None:intergenic
ATGTTTGGTGCCATTTAGGG+TGG 0.494410 1_4:-23905677 Msa0157040:three_prime_UTR
GGTTTCGCTGCGATAACCGC+CGG 0.495174 1_4:-23906500 Msa0157040:CDS
ATTATAAGGACTGAGAATCT+TGG 0.495971 1_4:+23906818 None:intergenic
TGAATAAATTGAAGTTGTTG+AGG 0.497576 1_4:-23906148 Msa0157040:CDS
TAGGTACTTATTATGGGCAA+TGG 0.500219 1_4:-23906652 Msa0157040:CDS
GGCAATGGAGTGCGGTGGGG+AGG 0.501855 1_4:-23906637 Msa0157040:CDS
GTGGTGGAGGGAAATTATTA+GGG 0.501970 1_4:-23906241 Msa0157040:CDS
TTATGGGGAGCACTTATTGA+AGG 0.501971 1_4:-23906969 Msa0157040:CDS
TATGGGCAATGGAGTGCGGT+GGG 0.503029 1_4:-23906641 Msa0157040:CDS
AAACAAAAGGTCCCCGGTGT+TGG 0.506596 1_4:+23907055 None:intergenic
TGACTCCGGTGCCAAACAAA+AGG 0.510137 1_4:+23907042 None:intergenic
TGGGCTAGCGCAACCAACAC+CGG 0.511581 1_4:-23907068 Msa0157040:CDS
ATCGGTCACGTTCCAGTGAC+CGG 0.514328 1_4:+23906544 None:intergenic
AGCTGCGAAACAGAGCATTC+CGG 0.515010 1_4:+23907614 None:intergenic
GGTCGAGCCGTGGCACTTCG+CGG 0.515352 1_4:-23906918 Msa0157040:CDS
CCAGTTTACCCGGATAAACC+TGG 0.516204 1_4:+23906288 None:intergenic
TCCACATTATCTCCAACGGT+TGG 0.516592 1_4:+23905820 None:intergenic
CAGGTTTATCCGGGTAAACT+GGG 0.517085 1_4:-23906287 Msa0157040:CDS
TTCGGGAAAAGAATTCTCTC+CGG 0.517363 1_4:-23906563 Msa0157040:CDS
TTGAAGGTCCGCGAATTGGA+CGG 0.518069 1_4:-23906953 Msa0157040:CDS
GTTGGTAAGCATGATGTTCA+TGG 0.520266 1_4:+23907388 None:intergenic
GATGTCTGCAACGGATTACT+CGG 0.521512 1_4:-23906524 Msa0157040:CDS
GTGCAACAAACTCGCGGAGA+AGG 0.523705 1_4:-23906411 Msa0157040:CDS
TGCGCTAGCCCAACCATCAC+CGG 0.524846 1_4:+23907079 None:intergenic
TCGTACATTACTTTGTGGTA+AGG 0.525952 1_4:-23905849 Msa0157040:three_prime_UTR
GGTTATTTATGGGTGGTGGA+GGG 0.528393 1_4:-23906253 Msa0157040:CDS
GGGCTAGCGCAACCAACACC+GGG 0.530553 1_4:-23907067 Msa0157040:CDS
CCCACCAAACATGTCGCTGC+CGG 0.531903 1_4:-23907633 Msa0157040:exon
GTTTCGCTGCGATAACCGCC+GGG 0.534726 1_4:-23906499 Msa0157040:CDS
GCGGTGACGACGACATTAGC+CGG 0.538079 1_4:-23906611 Msa0157040:CDS
TGATCGAACCGTCCAATTCG+CGG 0.541228 1_4:+23906945 None:intergenic
CCCTATGGGTTATTTATGGG+TGG 0.544513 1_4:-23906260 Msa0157040:CDS
GCACAATTACACGGTGGGTG+TGG 0.544851 1_4:-23906362 Msa0157040:CDS
CCTTGGGCAGCAATTGTATG+TGG 0.545119 1_4:-23906461 Msa0157040:CDS
TTTACTCATCGTTTCTCACA+GGG 0.546630 1_4:-23907136 Msa0157040:CDS
ATCTGTAGTTGGAGTAGGAG+TGG 0.549034 1_4:+23905998 None:intergenic
TCGTTCCGCAATAGAGCCGC+TGG 0.550227 1_4:+23907181 None:intergenic
CCACAGTAGGTCTCCTACCG+TGG 0.551444 1_4:-23905650 Msa0157040:three_prime_UTR
ATAGAAATGGGACTCAATTG+AGG 0.554439 1_4:-23906043 Msa0157040:CDS
AGGTTCTACAACGGAACACC+CGG 0.560703 1_4:+23906481 None:intergenic
GACGACATTAGCCGGTTGCA+CGG 0.562542 1_4:-23906603 Msa0157040:CDS
ACTGTGTCCGCGAAGTGCCA+CGG 0.564948 1_4:+23906911 None:intergenic
GTCCTCGACGCTGCTGCTGG+TGG 0.568629 1_4:-23907365 Msa0157040:CDS
CAAGTTGCATAGAGAAAACA+AGG 0.569214 1_4:+23907453 None:intergenic
AAAAGAAGAGTATGTGAACC+AGG 0.570298 1_4:-23906306 Msa0157040:CDS
CTTCGGCGTTGGTGGCGTTG+GGG 0.570819 1_4:+23907576 None:intergenic
AACTGAACCAGCACAAAGCA+TGG 0.571080 1_4:+23907424 None:intergenic
CACAGGGTTTGTTTACCCTG+TGG 0.571684 1_4:-23907120 Msa0157040:CDS
CACAAATCTGTAGTTGGAGT+AGG 0.574103 1_4:+23905993 None:intergenic
TATGTGAACCAGGTTTATCC+GGG 0.576473 1_4:-23906296 Msa0157040:CDS
TGTTTGGTGCCATTTAGGGT+GGG 0.581983 1_4:-23905676 Msa0157040:three_prime_UTR
ACTTTCCACATTATCTCCAA+CGG 0.582653 1_4:+23905816 None:intergenic
GACATGTTTGGTGGGTAGGT+GGG 0.584475 1_4:+23907641 None:intergenic
GATAATGTGGAAAGTTTGGG+TGG 0.584837 1_4:-23905808 Msa0157040:three_prime_UTR
TTCAACTGAAGATGAACTTG+CGG 0.585243 1_4:-23906123 Msa0157040:CDS
TGAAGGTGTTCCAAAAGCAA+AGG 0.585376 1_4:+23907316 None:intergenic
ACATTACTTTGTGGTAAGGA+AGG 0.585601 1_4:-23905845 Msa0157040:three_prime_UTR
GGTGTTGTTCATATGGTTGG+TGG 0.587357 1_4:-23907002 Msa0157040:CDS
GTAAACTGGGTCGACCCTAT+GGG 0.589828 1_4:-23906274 Msa0157040:CDS
TAGGGTCGACCCAGTTTACC+CGG 0.590994 1_4:+23906278 None:intergenic
TCCAACCGTTGGAGATAATG+TGG 0.591072 1_4:-23905821 Msa0157040:three_prime_UTR
TATCACCAGCGGCTCTATTG+CGG 0.592562 1_4:-23907186 Msa0157040:CDS
GCCAGCAAAATCAATGACTC+CGG 0.596809 1_4:+23907028 None:intergenic
AAATCATTTCATGTACATTG+TGG 0.598245 1_4:-23905513 Msa0157040:three_prime_UTR
GGGTGGGTAAGTGCAACTAT+GGG 0.598468 1_4:-23906188 Msa0157040:CDS
TGGATTTGACCCGACATGGT+GGG 0.598703 1_4:-23906097 Msa0157040:CDS
GGTGCCAAACAAAAGGTCCC+CGG 0.599775 1_4:+23907049 None:intergenic
CATAAGCAAACCCACCATGT+CGG 0.601038 1_4:+23906087 None:intergenic
CAAAACCAATGAGAAACCAC+AGG 0.603230 1_4:+23907104 None:intergenic
TCATTTCATGTACATTGTGG+TGG 0.604331 1_4:-23905510 None:intergenic
GTAAGGAAGGATCCAACCGT+TGG 0.607613 1_4:-23905832 Msa0157040:three_prime_UTR
ACCACCCATAAATAACCCAT+AGG 0.609604 1_4:+23906259 None:intergenic
TTATGGGCAATGGAGTGCGG+TGG 0.609738 1_4:-23906642 Msa0157040:CDS
GAGTGCGGTGGGGAGGACGG+CGG 0.614067 1_4:-23906630 Msa0157040:CDS
CGATCATTCTGGTCGAGCCG+TGG 0.616254 1_4:-23906928 Msa0157040:CDS
CCGGCAGCGACATGTTTGGT+GGG 0.617557 1_4:+23907633 None:intergenic
CGCCACCAGCAGCAGCGTCG+AGG 0.620566 1_4:+23907363 None:intergenic
AGGACTGAGAATCTTGGTGA+AGG 0.622311 1_4:+23906824 None:intergenic
AAATGGGAGTCTCCCACGGT+AGG 0.622597 1_4:+23905637 None:intergenic
CACAGTAGGTCTCCTACCGT+GGG 0.623031 1_4:-23905649 Msa0157040:three_prime_UTR
CCACCCATAAATAACCCATA+GGG 0.625187 1_4:+23906260 None:intergenic
GGTATGGATTTGACCCGACA+TGG 0.625832 1_4:-23906101 Msa0157040:CDS
GAGTAATCCGTTGCAGACAT+CGG 0.629600 1_4:+23906526 None:intergenic
AGCAGCAGCGTCGAGGACGT+TGG 0.631989 1_4:+23907370 None:intergenic
AAGCAGCACAATTACACGGT+GGG 0.632622 1_4:-23906367 Msa0157040:CDS
AACGTGACCGATGTCTGCAA+CGG 0.633445 1_4:-23906533 Msa0157040:CDS
AAAGAAATGGGAGTCTCCCA+CGG 0.635250 1_4:+23905633 None:intergenic
ATGGATTTGACCCGACATGG+TGG 0.636723 1_4:-23906098 Msa0157040:CDS
TGGTGGAGGGAAATTATTAG+GGG 0.638481 1_4:-23906240 Msa0157040:CDS
CCACATACAATTGCTGCCCA+AGG 0.640235 1_4:+23906461 None:intergenic
ACCAACCATATGAACAACAC+CGG 0.643450 1_4:+23907004 None:intergenic
ATAATGTGGAAAGTTTGGGT+GGG 0.646794 1_4:-23905807 Msa0157040:three_prime_UTR
TTAGGGTGGGAGACCACAGT+AGG 0.654580 1_4:-23905663 Msa0157040:three_prime_UTR
GGTGCAGATGAAATTTGCCG+CGG 0.660117 1_4:+23907553 None:intergenic
AATCGCGTGCAACAAACTCG+CGG 0.668565 1_4:-23906417 Msa0157040:CDS
TTAGAAGCAGCACAATTACA+CGG 0.668867 1_4:-23906371 Msa0157040:CDS
TTGGATTTGGAAATGACAAG+TGG 0.672216 1_4:-23905759 Msa0157040:three_prime_UTR
CCACGGTAGGAGACCTACTG+TGG 0.678834 1_4:+23905650 None:intergenic
ATGGGCAATGGAGTGCGGTG+GGG 0.682220 1_4:-23906640 Msa0157040:CDS
TTATTATGGGCAATGGAGTG+CGG 0.683210 1_4:-23906645 Msa0157040:CDS
GAATCTTGGTGAAGGAACCA+GGG 0.685698 1_4:+23906832 None:intergenic
GTCTGCAACGGATTACTCGG+CGG 0.686227 1_4:-23906521 Msa0157040:CDS
AGAGCCGCTGGTGATACCAG+CGG 0.694743 1_4:+23907193 None:intergenic
AGTGCCAAGAACAACAAGAG+AGG 0.695048 1_4:+23906887 None:intergenic
TGCTGCCCAAGGTTCTACAA+CGG 0.701646 1_4:+23906472 None:intergenic
GCAGCCGCTGGTATCACCAG+CGG 0.703921 1_4:-23907197 Msa0157040:CDS
GCACGCGATTAAAACAATAG+CGG 0.740384 1_4:+23906430 None:intergenic
GGCTAGCGCAACCAACACCG+GGG 0.741776 1_4:-23907066 Msa0157040:CDS
GAAGCAGCACAATTACACGG+TGG 0.750534 1_4:-23906368 Msa0157040:CDS
TTCTACAACGGAACACCCGG+CGG 0.760823 1_4:+23906484 None:intergenic
AAAACCAATGAGAAACCACA+GGG 0.764570 1_4:+23907105 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAATTAAAATTTGAAA+AGG + chr1_4:23906606-23906625 None:intergenic 10.0%
!!! TTAAATTTTTATGGAATTTT+AGG - chr1_4:23906625-23906644 Msa0157040:CDS 10.0%
!!! GTAATAATTTAAATTTGTTT+TGG - chr1_4:23907329-23907348 Msa0157040:CDS 10.0%
!! AAAAATAAAAAGAAAGAAAT+GGG + chr1_4:23907678-23907697 None:intergenic 10.0%
!! AAAAAATAAAAAGAAAGAAA+TGG + chr1_4:23907679-23907698 None:intergenic 10.0%
!!! TTTCTTTCTTTTTATTTTTT+TGG - chr1_4:23907679-23907698 Msa0157040:five_prime_UTR 10.0%
!! AAAGAAATTAAAATTTGAAA+AGG + chr1_4:23906606-23906625 None:intergenic 10.0%
!!! TTAAATTTTTATGGAATTTT+AGG - chr1_4:23906625-23906644 Msa0157040:CDS 10.0%
!!! GTAATAATTTAAATTTGTTT+TGG - chr1_4:23907329-23907348 Msa0157040:CDS 10.0%
!! AAAAATAAAAAGAAAGAAAT+GGG + chr1_4:23907678-23907697 None:intergenic 10.0%
!! AAAAAATAAAAAGAAAGAAA+TGG + chr1_4:23907679-23907698 None:intergenic 10.0%
!!! TTTCTTTCTTTTTATTTTTT+TGG - chr1_4:23907679-23907698 Msa0157040:five_prime_UTR 10.0%
!!! ATACAAATTTTGGTTATTAT+TGG - chr1_4:23907087-23907106 Msa0157040:CDS 15.0%
!!! TACAAATTTTGGTTATTATT+GGG - chr1_4:23907088-23907107 Msa0157040:CDS 15.0%
!! ATATAAAAAACTATTACTAG+TGG + chr1_4:23907362-23907381 None:intergenic 15.0%
!! CATTGTAATTTATATTTGAT+TGG - chr1_4:23907424-23907443 Msa0157040:CDS 15.0%
!!! ATACAAATTTTGGTTATTAT+TGG - chr1_4:23907087-23907106 Msa0157040:CDS 15.0%
!!! TACAAATTTTGGTTATTATT+GGG - chr1_4:23907088-23907107 Msa0157040:CDS 15.0%
!! ATATAAAAAACTATTACTAG+TGG + chr1_4:23907362-23907381 None:intergenic 15.0%
!! CATTGTAATTTATATTTGAT+TGG - chr1_4:23907424-23907443 Msa0157040:CDS 15.0%
!!! GAATTTTAGGTACTTATTAT+GGG - chr1_4:23906638-23906657 Msa0157040:CDS 20.0%
!! TTATTCAAAACAAAGAATAG+TGG + chr1_4:23907135-23907154 None:intergenic 20.0%
!!! TTTATTTTCTAGATCTAGAA+AGG - chr1_4:23907383-23907402 Msa0157040:CDS 20.0%
!!! GAAAGGTATTTTTAATTGTA+CGG - chr1_4:23907400-23907419 Msa0157040:CDS 20.0%
!!! GAATTTTAGGTACTTATTAT+GGG - chr1_4:23906638-23906657 Msa0157040:CDS 20.0%
!! TTATTCAAAACAAAGAATAG+TGG + chr1_4:23907135-23907154 None:intergenic 20.0%
!!! TTTATTTTCTAGATCTAGAA+AGG - chr1_4:23907383-23907402 Msa0157040:CDS 20.0%
!!! GAAAGGTATTTTTAATTGTA+CGG - chr1_4:23907400-23907419 Msa0157040:CDS 20.0%
!!! TAGACTTTTGATTTTTGAGT+AGG + chr1_4:23905531-23905550 None:intergenic 25.0%
! TACTCAAAAATCAAAAGTCT+AGG - chr1_4:23905530-23905549 Msa0157040:three_prime_UTR 25.0%
! TTCATTGGAAAACATTTCTT+TGG - chr1_4:23906009-23906028 Msa0157040:CDS 25.0%
!! CTGTAATCAAAATTTTCAGT+CGG + chr1_4:23906048-23906067 None:intergenic 25.0%
!!! ACAGTTATTTTCTCTATCAA+TGG - chr1_4:23906064-23906083 Msa0157040:CDS 25.0%
!!! CAGTTATTTTCTCTATCAAT+GGG - chr1_4:23906065-23906084 Msa0157040:CDS 25.0%
! AGTTAACTACCTGAATTATA+AGG + chr1_4:23906495-23906514 None:intergenic 25.0%
!! ACTAACTACTTTCATTGTTT+TGG - chr1_4:23906529-23906548 Msa0157040:CDS 25.0%
!!! GGAATTTTAGGTACTTATTA+TGG - chr1_4:23906637-23906656 Msa0157040:CDS 25.0%
!!! AAATTTTGGTTATTATTGGG+TGG - chr1_4:23907091-23907110 Msa0157040:CDS 25.0%
!!! AATTTTGGTTATTATTGGGT+GGG - chr1_4:23907092-23907111 Msa0157040:CDS 25.0%
! TGAATAAATTGAAGTTGTTG+AGG - chr1_4:23907148-23907167 Msa0157040:CDS 25.0%
!! TTTGTTGACTAATGTAATGT+TGG - chr1_4:23907518-23907537 Msa0157040:CDS 25.0%
! GGTAATAAAAAATTGCTTCT+TGG - chr1_4:23907558-23907577 Msa0157040:CDS 25.0%
! AAATCATTTCATGTACATTG+TGG - chr1_4:23907783-23907802 Msa0157040:five_prime_UTR 25.0%
! AATCATTTCATGTACATTGT+GGG - chr1_4:23907784-23907803 Msa0157040:five_prime_UTR 25.0%
!!! TAGACTTTTGATTTTTGAGT+AGG + chr1_4:23905531-23905550 None:intergenic 25.0%
! TACTCAAAAATCAAAAGTCT+AGG - chr1_4:23905530-23905549 Msa0157040:three_prime_UTR 25.0%
! TTCATTGGAAAACATTTCTT+TGG - chr1_4:23906009-23906028 Msa0157040:CDS 25.0%
!! CTGTAATCAAAATTTTCAGT+CGG + chr1_4:23906048-23906067 None:intergenic 25.0%
!!! ACAGTTATTTTCTCTATCAA+TGG - chr1_4:23906064-23906083 Msa0157040:CDS 25.0%
!!! CAGTTATTTTCTCTATCAAT+GGG - chr1_4:23906065-23906084 Msa0157040:CDS 25.0%
! AGTTAACTACCTGAATTATA+AGG + chr1_4:23906495-23906514 None:intergenic 25.0%
!! ACTAACTACTTTCATTGTTT+TGG - chr1_4:23906529-23906548 Msa0157040:CDS 25.0%
!!! GGAATTTTAGGTACTTATTA+TGG - chr1_4:23906637-23906656 Msa0157040:CDS 25.0%
!!! AAATTTTGGTTATTATTGGG+TGG - chr1_4:23907091-23907110 Msa0157040:CDS 25.0%
!!! AATTTTGGTTATTATTGGGT+GGG - chr1_4:23907092-23907111 Msa0157040:CDS 25.0%
! TGAATAAATTGAAGTTGTTG+AGG - chr1_4:23907148-23907167 Msa0157040:CDS 25.0%
!! TTTGTTGACTAATGTAATGT+TGG - chr1_4:23907518-23907537 Msa0157040:CDS 25.0%
! GGTAATAAAAAATTGCTTCT+TGG - chr1_4:23907558-23907577 Msa0157040:CDS 25.0%
TTTCCAATGAAACCATTTGA+AGG + chr1_4:23906000-23906019 None:intergenic 30.0%
AAAACATTTCTTTGGTCTGA+AGG - chr1_4:23906017-23906036 Msa0157040:CDS 30.0%
ATTATAAGGACTGAGAATCT+TGG + chr1_4:23906481-23906500 None:intergenic 30.0%
ATTCTCAGTCCTTATAATTC+AGG - chr1_4:23906483-23906502 Msa0157040:CDS 30.0%
ATGAAGGATCACATAGAAAT+GGG - chr1_4:23907241-23907260 Msa0157040:CDS 30.0%
TACAATCACAAATCTGTAGT+TGG + chr1_4:23907312-23907331 None:intergenic 30.0%
GACTAATGTAATGTTGGATT+TGG - chr1_4:23907524-23907543 Msa0157040:CDS 30.0%
!!! CTTAAATAACCTGTTTTTGC+AGG - chr1_4:23907706-23907725 Msa0157040:five_prime_UTR 30.0%
!!! TTTTTGCAGCTTTATTGTGT+AGG - chr1_4:23907741-23907760 Msa0157040:five_prime_UTR 30.0%
TTTCCAATGAAACCATTTGA+AGG + chr1_4:23906000-23906019 None:intergenic 30.0%
AAAACATTTCTTTGGTCTGA+AGG - chr1_4:23906017-23906036 Msa0157040:CDS 30.0%
ATTATAAGGACTGAGAATCT+TGG + chr1_4:23906481-23906500 None:intergenic 30.0%
ATTCTCAGTCCTTATAATTC+AGG - chr1_4:23906483-23906502 Msa0157040:CDS 30.0%
ATGAAGGATCACATAGAAAT+GGG - chr1_4:23907241-23907260 Msa0157040:CDS 30.0%
TACAATCACAAATCTGTAGT+TGG + chr1_4:23907312-23907331 None:intergenic 30.0%
GACTAATGTAATGTTGGATT+TGG - chr1_4:23907524-23907543 Msa0157040:CDS 30.0%
!!! CTTAAATAACCTGTTTTTGC+AGG - chr1_4:23907706-23907725 Msa0157040:five_prime_UTR 30.0%
!!! TTTTTGCAGCTTTATTGTGT+AGG - chr1_4:23907741-23907760 Msa0157040:five_prime_UTR 30.0%
GTAAGCTGAGAATAGAAGAT+AGG + chr1_4:23905824-23905843 None:intergenic 35.0%
CAAGTTGCATAGAGAAAACA+AGG + chr1_4:23905846-23905865 None:intergenic 35.0%
!! CTTGTTTTCTCTATGCAACT+TGG - chr1_4:23905844-23905863 Msa0157040:three_prime_UTR 35.0%
ACACCTTCAAATGGTTTCAT+TGG - chr1_4:23905994-23906013 Msa0157040:CDS 35.0%
ATTTACTCATCGTTTCTCAC+AGG - chr1_4:23906159-23906178 Msa0157040:CDS 35.0%
TTTACTCATCGTTTCTCACA+GGG - chr1_4:23906160-23906179 Msa0157040:CDS 35.0%
AAAACCAATGAGAAACCACA+GGG + chr1_4:23906194-23906213 None:intergenic 35.0%
!!! ATTGTTTTGGATGCACCTAA+TGG - chr1_4:23906542-23906561 Msa0157040:CDS 35.0%
TTCAACAAGAGCTTTCCATT+AGG + chr1_4:23906560-23906579 None:intergenic 35.0%
TAGGTACTTATTATGGGCAA+TGG - chr1_4:23906644-23906663 Msa0157040:CDS 35.0%
!! TGTAATTGTGCTGCTTCTAA+TGG + chr1_4:23906925-23906944 None:intergenic 35.0%
TTAGAAGCAGCACAATTACA+CGG - chr1_4:23906925-23906944 Msa0157040:CDS 35.0%
! CTCTTCTTTTGCAAACAAAG+CGG + chr1_4:23906980-23906999 None:intergenic 35.0%
! AAAAGAAGAGTATGTGAACC+AGG - chr1_4:23906990-23907009 Msa0157040:CDS 35.0%
! GGCACATGTGATACAAATTT+TGG - chr1_4:23907077-23907096 Msa0157040:CDS 35.0%
TTCAACTGAAGATGAACTTG+CGG - chr1_4:23907173-23907192 Msa0157040:CDS 35.0%
GCTTATGCTTATGAAGATGA+AGG - chr1_4:23907225-23907244 Msa0157040:CDS 35.0%
GATGAAGGATCACATAGAAA+TGG - chr1_4:23907240-23907259 Msa0157040:CDS 35.0%
ATAGAAATGGGACTCAATTG+AGG - chr1_4:23907253-23907272 Msa0157040:CDS 35.0%
ATTGGTCGTACATTACTTTG+TGG - chr1_4:23907442-23907461 Msa0157040:CDS 35.0%
TCGTACATTACTTTGTGGTA+AGG - chr1_4:23907447-23907466 Msa0157040:CDS 35.0%
ACATTACTTTGTGGTAAGGA+AGG - chr1_4:23907451-23907470 Msa0157040:CDS 35.0%
ACTTTCCACATTATCTCCAA+CGG + chr1_4:23907483-23907502 None:intergenic 35.0%
TGGAGATAATGTGGAAAGTT+TGG - chr1_4:23907484-23907503 Msa0157040:CDS 35.0%
GGAGATAATGTGGAAAGTTT+GGG - chr1_4:23907485-23907504 Msa0157040:CDS 35.0%
ATAATGTGGAAAGTTTGGGT+GGG - chr1_4:23907489-23907508 Msa0157040:CDS 35.0%
TTGGATTTGGAAATGACAAG+TGG - chr1_4:23907537-23907556 Msa0157040:CDS 35.0%
TTGCTTCTTGGAAAATGTCT+TGG - chr1_4:23907570-23907589 Msa0157040:CDS 35.0%
! TGAGATTTGCTTCACATGTT+TGG - chr1_4:23907604-23907623 Msa0157040:CDS 35.0%
GTAAGCTGAGAATAGAAGAT+AGG + chr1_4:23905824-23905843 None:intergenic 35.0%
CAAGTTGCATAGAGAAAACA+AGG + chr1_4:23905846-23905865 None:intergenic 35.0%
!! CTTGTTTTCTCTATGCAACT+TGG - chr1_4:23905844-23905863 Msa0157040:three_prime_UTR 35.0%
ACACCTTCAAATGGTTTCAT+TGG - chr1_4:23905994-23906013 Msa0157040:CDS 35.0%
ATTTACTCATCGTTTCTCAC+AGG - chr1_4:23906159-23906178 Msa0157040:CDS 35.0%
TTTACTCATCGTTTCTCACA+GGG - chr1_4:23906160-23906179 Msa0157040:CDS 35.0%
AAAACCAATGAGAAACCACA+GGG + chr1_4:23906194-23906213 None:intergenic 35.0%
!!! ATTGTTTTGGATGCACCTAA+TGG - chr1_4:23906542-23906561 Msa0157040:CDS 35.0%
TTCAACAAGAGCTTTCCATT+AGG + chr1_4:23906560-23906579 None:intergenic 35.0%
TAGGTACTTATTATGGGCAA+TGG - chr1_4:23906644-23906663 Msa0157040:CDS 35.0%
!! TGTAATTGTGCTGCTTCTAA+TGG + chr1_4:23906925-23906944 None:intergenic 35.0%
TTAGAAGCAGCACAATTACA+CGG - chr1_4:23906925-23906944 Msa0157040:CDS 35.0%
! CTCTTCTTTTGCAAACAAAG+CGG + chr1_4:23906980-23906999 None:intergenic 35.0%
! AAAAGAAGAGTATGTGAACC+AGG - chr1_4:23906990-23907009 Msa0157040:CDS 35.0%
! GGCACATGTGATACAAATTT+TGG - chr1_4:23907077-23907096 Msa0157040:CDS 35.0%
TTCAACTGAAGATGAACTTG+CGG - chr1_4:23907173-23907192 Msa0157040:CDS 35.0%
GCTTATGCTTATGAAGATGA+AGG - chr1_4:23907225-23907244 Msa0157040:CDS 35.0%
GATGAAGGATCACATAGAAA+TGG - chr1_4:23907240-23907259 Msa0157040:CDS 35.0%
ATAGAAATGGGACTCAATTG+AGG - chr1_4:23907253-23907272 Msa0157040:CDS 35.0%
ATTGGTCGTACATTACTTTG+TGG - chr1_4:23907442-23907461 Msa0157040:CDS 35.0%
TCGTACATTACTTTGTGGTA+AGG - chr1_4:23907447-23907466 Msa0157040:CDS 35.0%
ACATTACTTTGTGGTAAGGA+AGG - chr1_4:23907451-23907470 Msa0157040:CDS 35.0%
ACTTTCCACATTATCTCCAA+CGG + chr1_4:23907483-23907502 None:intergenic 35.0%
TGGAGATAATGTGGAAAGTT+TGG - chr1_4:23907484-23907503 Msa0157040:CDS 35.0%
GGAGATAATGTGGAAAGTTT+GGG - chr1_4:23907485-23907504 Msa0157040:CDS 35.0%
ATAATGTGGAAAGTTTGGGT+GGG - chr1_4:23907489-23907508 Msa0157040:CDS 35.0%
TTGGATTTGGAAATGACAAG+TGG - chr1_4:23907537-23907556 Msa0157040:CDS 35.0%
TTGCTTCTTGGAAAATGTCT+TGG - chr1_4:23907570-23907589 Msa0157040:CDS 35.0%
! TGAGATTTGCTTCACATGTT+TGG - chr1_4:23907604-23907623 Msa0157040:CDS 35.0%
AAAGAGTAGCAGCAAGTGTT+AGG + chr1_4:23905563-23905582 None:intergenic 40.0%
! GTTGGTAAGCATGATGTTCA+TGG + chr1_4:23905911-23905930 None:intergenic 40.0%
! GGCGTTTTCTACTATCTCTT+CGG - chr1_4:23905952-23905971 Msa0157040:three_prime_UTR 40.0%
! TTCGGTTTTGCCTTTGCTTT+TGG - chr1_4:23905970-23905989 Msa0157040:three_prime_UTR 40.0%
!! TGAAGGTGTTCCAAAAGCAA+AGG + chr1_4:23905983-23906002 None:intergenic 40.0%
!!! GCTTTTGGAACACCTTCAAA+TGG - chr1_4:23905985-23906004 Msa0157040:exon 40.0%
TTTACCCTGTGGTTTCTCAT+TGG - chr1_4:23906187-23906206 Msa0157040:CDS 40.0%
CAAAACCAATGAGAAACCAC+AGG + chr1_4:23906195-23906214 None:intergenic 40.0%
!!! CTGTGGTTTCTCATTGGTTT+TGG - chr1_4:23906193-23906212 Msa0157040:CDS 40.0%
!!! GTTTCTCATTGGTTTTGGTC+CGG - chr1_4:23906198-23906217 Msa0157040:CDS 40.0%
ACCAACCATATGAACAACAC+CGG + chr1_4:23906295-23906314 None:intergenic 40.0%
!! TTGGTGGTATTGCTGGTTTA+TGG - chr1_4:23906310-23906329 Msa0157040:CDS 40.0%
!! TGGTGGTATTGCTGGTTTAT+GGG - chr1_4:23906311-23906330 Msa0157040:CDS 40.0%
!! TTATGGGGAGCACTTATTGA+AGG - chr1_4:23906327-23906346 Msa0157040:CDS 40.0%
TTCTTGGCACTTTCATGCTT+TGG - chr1_4:23906421-23906440 Msa0157040:CDS 40.0%
!! CTTTCATGCTTTGGTTTGGT+TGG - chr1_4:23906430-23906449 Msa0157040:CDS 40.0%
!! ATGCTTTGGTTTGGTTGGTA+TGG - chr1_4:23906435-23906454 Msa0157040:CDS 40.0%
TTATTATGGGCAATGGAGTG+CGG - chr1_4:23906651-23906670 Msa0157040:CDS 40.0%
TTCGGGAAAAGAATTCTCTC+CGG - chr1_4:23906733-23906752 Msa0157040:intron 40.0%
GCACGCGATTAAAACAATAG+CGG + chr1_4:23906869-23906888 None:intergenic 40.0%
GTATGTGAACCAGGTTTATC+CGG - chr1_4:23906999-23907018 Msa0157040:CDS 40.0%
TATGTGAACCAGGTTTATCC+GGG - chr1_4:23907000-23907019 Msa0157040:CDS 40.0%
! TCGACCCTATGGGTTATTTA+TGG - chr1_4:23907032-23907051 Msa0157040:CDS 40.0%
! CGACCCTATGGGTTATTTAT+GGG - chr1_4:23907033-23907052 Msa0157040:CDS 40.0%
CCACCCATAAATAACCCATA+GGG + chr1_4:23907039-23907058 None:intergenic 40.0%
ACCACCCATAAATAACCCAT+AGG + chr1_4:23907040-23907059 None:intergenic 40.0%
! TATGGGTTATTTATGGGTGG+TGG - chr1_4:23907039-23907058 Msa0157040:CDS 40.0%
! GTGGTGGAGGGAAATTATTA+GGG - chr1_4:23907055-23907074 Msa0157040:CDS 40.0%
TGGTGGAGGGAAATTATTAG+GGG - chr1_4:23907056-23907075 Msa0157040:CDS 40.0%
TCAACTGAAGATGAACTTGC+GGG - chr1_4:23907174-23907193 Msa0157040:CDS 40.0%
CACAAATCTGTAGTTGGAGT+AGG + chr1_4:23907306-23907325 None:intergenic 40.0%
GATAATGTGGAAAGTTTGGG+TGG - chr1_4:23907488-23907507 Msa0157040:CDS 40.0%
!! TCACATGTTTGGTGCCATTT+AGG - chr1_4:23907615-23907634 Msa0157040:CDS 40.0%
!! CACATGTTTGGTGCCATTTA+GGG - chr1_4:23907616-23907635 Msa0157040:CDS 40.0%
TGTACATCACCTGCAAAAAC+AGG + chr1_4:23907718-23907737 None:intergenic 40.0%
AAAGAGTAGCAGCAAGTGTT+AGG + chr1_4:23905563-23905582 None:intergenic 40.0%
! GTTGGTAAGCATGATGTTCA+TGG + chr1_4:23905911-23905930 None:intergenic 40.0%
! GGCGTTTTCTACTATCTCTT+CGG - chr1_4:23905952-23905971 Msa0157040:three_prime_UTR 40.0%
! TTCGGTTTTGCCTTTGCTTT+TGG - chr1_4:23905970-23905989 Msa0157040:three_prime_UTR 40.0%
!! TGAAGGTGTTCCAAAAGCAA+AGG + chr1_4:23905983-23906002 None:intergenic 40.0%
!!! GCTTTTGGAACACCTTCAAA+TGG - chr1_4:23905985-23906004 Msa0157040:exon 40.0%
TTTACCCTGTGGTTTCTCAT+TGG - chr1_4:23906187-23906206 Msa0157040:CDS 40.0%
CAAAACCAATGAGAAACCAC+AGG + chr1_4:23906195-23906214 None:intergenic 40.0%
!!! CTGTGGTTTCTCATTGGTTT+TGG - chr1_4:23906193-23906212 Msa0157040:CDS 40.0%
!!! GTTTCTCATTGGTTTTGGTC+CGG - chr1_4:23906198-23906217 Msa0157040:CDS 40.0%
ACCAACCATATGAACAACAC+CGG + chr1_4:23906295-23906314 None:intergenic 40.0%
!! TTGGTGGTATTGCTGGTTTA+TGG - chr1_4:23906310-23906329 Msa0157040:CDS 40.0%
!! TGGTGGTATTGCTGGTTTAT+GGG - chr1_4:23906311-23906330 Msa0157040:CDS 40.0%
!! TTATGGGGAGCACTTATTGA+AGG - chr1_4:23906327-23906346 Msa0157040:CDS 40.0%
TTCTTGGCACTTTCATGCTT+TGG - chr1_4:23906421-23906440 Msa0157040:CDS 40.0%
!! CTTTCATGCTTTGGTTTGGT+TGG - chr1_4:23906430-23906449 Msa0157040:CDS 40.0%
!! ATGCTTTGGTTTGGTTGGTA+TGG - chr1_4:23906435-23906454 Msa0157040:CDS 40.0%
TTATTATGGGCAATGGAGTG+CGG - chr1_4:23906651-23906670 Msa0157040:CDS 40.0%
TTCGGGAAAAGAATTCTCTC+CGG - chr1_4:23906733-23906752 Msa0157040:intron 40.0%
GCACGCGATTAAAACAATAG+CGG + chr1_4:23906869-23906888 None:intergenic 40.0%
GTATGTGAACCAGGTTTATC+CGG - chr1_4:23906999-23907018 Msa0157040:CDS 40.0%
TATGTGAACCAGGTTTATCC+GGG - chr1_4:23907000-23907019 Msa0157040:CDS 40.0%
! TCGACCCTATGGGTTATTTA+TGG - chr1_4:23907032-23907051 Msa0157040:CDS 40.0%
! CGACCCTATGGGTTATTTAT+GGG - chr1_4:23907033-23907052 Msa0157040:CDS 40.0%
CCACCCATAAATAACCCATA+GGG + chr1_4:23907039-23907058 None:intergenic 40.0%
ACCACCCATAAATAACCCAT+AGG + chr1_4:23907040-23907059 None:intergenic 40.0%
! TATGGGTTATTTATGGGTGG+TGG - chr1_4:23907039-23907058 Msa0157040:CDS 40.0%
! GTGGTGGAGGGAAATTATTA+GGG - chr1_4:23907055-23907074 Msa0157040:CDS 40.0%
TGGTGGAGGGAAATTATTAG+GGG - chr1_4:23907056-23907075 Msa0157040:CDS 40.0%
TCAACTGAAGATGAACTTGC+GGG - chr1_4:23907174-23907193 Msa0157040:CDS 40.0%
CACAAATCTGTAGTTGGAGT+AGG + chr1_4:23907306-23907325 None:intergenic 40.0%
GATAATGTGGAAAGTTTGGG+TGG - chr1_4:23907488-23907507 Msa0157040:CDS 40.0%
!! TCACATGTTTGGTGCCATTT+AGG - chr1_4:23907615-23907634 Msa0157040:CDS 40.0%
!! CACATGTTTGGTGCCATTTA+GGG - chr1_4:23907616-23907635 Msa0157040:CDS 40.0%
TGTACATCACCTGCAAAAAC+AGG + chr1_4:23907718-23907737 None:intergenic 40.0%
GTTTGACACTGCTGTGAACT+GGG + chr1_4:23905767-23905786 None:intergenic 45.0%
TGTTTGACACTGCTGTGAAC+TGG + chr1_4:23905768-23905787 None:intergenic 45.0%
AACTGAACCAGCACAAAGCA+TGG + chr1_4:23905875-23905894 None:intergenic 45.0%
!!! ACCGGAGTCATTGATTTTGC+TGG - chr1_4:23906267-23906286 Msa0157040:CDS 45.0%
GCCAGCAAAATCAATGACTC+CGG + chr1_4:23906271-23906290 None:intergenic 45.0%
!!! GTCATTGATTTTGCTGGCTC+CGG - chr1_4:23906273-23906292 Msa0157040:CDS 45.0%
!! TCCGGTGTTGTTCATATGGT+TGG - chr1_4:23906291-23906310 Msa0157040:CDS 45.0%
!! GGTGTTGTTCATATGGTTGG+TGG - chr1_4:23906294-23906313 Msa0157040:CDS 45.0%
!! CATATGGTTGGTGGTATTGC+TGG - chr1_4:23906303-23906322 Msa0157040:CDS 45.0%
!! GGTGGTATTGCTGGTTTATG+GGG - chr1_4:23906312-23906331 Msa0157040:CDS 45.0%
CTTATTGAAGGTCCGCGAAT+TGG - chr1_4:23906339-23906358 Msa0157040:CDS 45.0%
ATTGGACGGTTCGATCATTC+TGG - chr1_4:23906357-23906376 Msa0157040:CDS 45.0%
!! AGTGCCTCTCTTGTTGTTCT+TGG - chr1_4:23906405-23906424 Msa0157040:CDS 45.0%
AGTGCCAAGAACAACAAGAG+AGG + chr1_4:23906412-23906431 None:intergenic 45.0%
GGCACTTTCATGCTTTGGTT+TGG - chr1_4:23906426-23906445 Msa0157040:CDS 45.0%
GAATCTTGGTGAAGGAACCA+GGG + chr1_4:23906467-23906486 None:intergenic 45.0%
AGAATCTTGGTGAAGGAACC+AGG + chr1_4:23906468-23906487 None:intergenic 45.0%
AGGACTGAGAATCTTGGTGA+AGG + chr1_4:23906475-23906494 None:intergenic 45.0%
!! GCAGCTCTAACGACACTTTT+CGG - chr1_4:23906715-23906734 Msa0157040:intron 45.0%
!! CAGCTCTAACGACACTTTTC+GGG - chr1_4:23906716-23906735 Msa0157040:intron 45.0%
AAAGAATTCTCTCCGGTCAC+TGG - chr1_4:23906740-23906759 Msa0157040:intron 45.0%
GAGTAATCCGTTGCAGACAT+CGG + chr1_4:23906773-23906792 None:intergenic 45.0%
!! GATGTCTGCAACGGATTACT+CGG - chr1_4:23906772-23906791 Msa0157040:intron 45.0%
GTGTTCCGTTGTAGAACCTT+GGG - chr1_4:23906819-23906838 Msa0157040:CDS 45.0%
AAGCAGCACAATTACACGGT+GGG - chr1_4:23906929-23906948 Msa0157040:CDS 45.0%
CAGGTTTATCCGGGTAAACT+GGG - chr1_4:23907009-23907028 Msa0157040:CDS 45.0%
! CCCTATGGGTTATTTATGGG+TGG - chr1_4:23907036-23907055 Msa0157040:CDS 45.0%
!! GGTTATTTATGGGTGGTGGA+GGG - chr1_4:23907043-23907062 Msa0157040:CDS 45.0%
!! GGTGGTGGAGGGAAATTATT+AGG - chr1_4:23907054-23907073 Msa0157040:CDS 45.0%
TGAAGATGAACTTGCGGGTA+TGG - chr1_4:23907179-23907198 Msa0157040:CDS 45.0%
ATAAGCAAACCCACCATGTC+GGG + chr1_4:23907211-23907230 None:intergenic 45.0%
CATAAGCAAACCCACCATGT+CGG + chr1_4:23907212-23907231 None:intergenic 45.0%
ATCTGTAGTTGGAGTAGGAG+TGG + chr1_4:23907301-23907320 None:intergenic 45.0%
TCCAACCGTTGGAGATAATG+TGG - chr1_4:23907475-23907494 Msa0157040:CDS 45.0%
TCCACATTATCTCCAACGGT+TGG + chr1_4:23907479-23907498 None:intergenic 45.0%
!! ATGTTTGGTGCCATTTAGGG+TGG - chr1_4:23907619-23907638 Msa0157040:CDS 45.0%
!! TGTTTGGTGCCATTTAGGGT+GGG - chr1_4:23907620-23907639 Msa0157040:CDS 45.0%
AAAGAAATGGGAGTCTCCCA+CGG + chr1_4:23907666-23907685 None:intergenic 45.0%
GTTTGACACTGCTGTGAACT+GGG + chr1_4:23905767-23905786 None:intergenic 45.0%
TGTTTGACACTGCTGTGAAC+TGG + chr1_4:23905768-23905787 None:intergenic 45.0%
AACTGAACCAGCACAAAGCA+TGG + chr1_4:23905875-23905894 None:intergenic 45.0%
!!! ACCGGAGTCATTGATTTTGC+TGG - chr1_4:23906267-23906286 Msa0157040:CDS 45.0%
GCCAGCAAAATCAATGACTC+CGG + chr1_4:23906271-23906290 None:intergenic 45.0%
!!! GTCATTGATTTTGCTGGCTC+CGG - chr1_4:23906273-23906292 Msa0157040:CDS 45.0%
!! TCCGGTGTTGTTCATATGGT+TGG - chr1_4:23906291-23906310 Msa0157040:CDS 45.0%
!! GGTGTTGTTCATATGGTTGG+TGG - chr1_4:23906294-23906313 Msa0157040:CDS 45.0%
!! CATATGGTTGGTGGTATTGC+TGG - chr1_4:23906303-23906322 Msa0157040:CDS 45.0%
!! GGTGGTATTGCTGGTTTATG+GGG - chr1_4:23906312-23906331 Msa0157040:CDS 45.0%
CTTATTGAAGGTCCGCGAAT+TGG - chr1_4:23906339-23906358 Msa0157040:CDS 45.0%
ATTGGACGGTTCGATCATTC+TGG - chr1_4:23906357-23906376 Msa0157040:CDS 45.0%
!! AGTGCCTCTCTTGTTGTTCT+TGG - chr1_4:23906405-23906424 Msa0157040:CDS 45.0%
AGTGCCAAGAACAACAAGAG+AGG + chr1_4:23906412-23906431 None:intergenic 45.0%
GGCACTTTCATGCTTTGGTT+TGG - chr1_4:23906426-23906445 Msa0157040:CDS 45.0%
GAATCTTGGTGAAGGAACCA+GGG + chr1_4:23906467-23906486 None:intergenic 45.0%
AGAATCTTGGTGAAGGAACC+AGG + chr1_4:23906468-23906487 None:intergenic 45.0%
AGGACTGAGAATCTTGGTGA+AGG + chr1_4:23906475-23906494 None:intergenic 45.0%
!! GCAGCTCTAACGACACTTTT+CGG - chr1_4:23906715-23906734 Msa0157040:intron 45.0%
!! CAGCTCTAACGACACTTTTC+GGG - chr1_4:23906716-23906735 Msa0157040:intron 45.0%
AAAGAATTCTCTCCGGTCAC+TGG - chr1_4:23906740-23906759 Msa0157040:intron 45.0%
GAGTAATCCGTTGCAGACAT+CGG + chr1_4:23906773-23906792 None:intergenic 45.0%
!! GATGTCTGCAACGGATTACT+CGG - chr1_4:23906772-23906791 Msa0157040:intron 45.0%
GTGTTCCGTTGTAGAACCTT+GGG - chr1_4:23906819-23906838 Msa0157040:CDS 45.0%
AAGCAGCACAATTACACGGT+GGG - chr1_4:23906929-23906948 Msa0157040:CDS 45.0%
CAGGTTTATCCGGGTAAACT+GGG - chr1_4:23907009-23907028 Msa0157040:CDS 45.0%
! CCCTATGGGTTATTTATGGG+TGG - chr1_4:23907036-23907055 Msa0157040:CDS 45.0%
!! GGTTATTTATGGGTGGTGGA+GGG - chr1_4:23907043-23907062 Msa0157040:CDS 45.0%
!! GGTGGTGGAGGGAAATTATT+AGG - chr1_4:23907054-23907073 Msa0157040:CDS 45.0%
TGAAGATGAACTTGCGGGTA+TGG - chr1_4:23907179-23907198 Msa0157040:CDS 45.0%
ATAAGCAAACCCACCATGTC+GGG + chr1_4:23907211-23907230 None:intergenic 45.0%
CATAAGCAAACCCACCATGT+CGG + chr1_4:23907212-23907231 None:intergenic 45.0%
ATCTGTAGTTGGAGTAGGAG+TGG + chr1_4:23907301-23907320 None:intergenic 45.0%
TCCAACCGTTGGAGATAATG+TGG - chr1_4:23907475-23907494 Msa0157040:CDS 45.0%
TCCACATTATCTCCAACGGT+TGG + chr1_4:23907479-23907498 None:intergenic 45.0%
!! ATGTTTGGTGCCATTTAGGG+TGG - chr1_4:23907619-23907638 Msa0157040:CDS 45.0%
!! TGTTTGGTGCCATTTAGGGT+GGG - chr1_4:23907620-23907639 Msa0157040:CDS 45.0%
AAAGAAATGGGAGTCTCCCA+CGG + chr1_4:23907666-23907685 None:intergenic 45.0%
!!! TAATTTCTTTTAAATTTTTA+TGG - chr1_4:23906616-23906635 Msa0157040:CDS 5.0%
!!! TAATTTCTTTTAAATTTTTA+TGG - chr1_4:23906616-23906635 Msa0157040:CDS 5.0%
! GACATGTTTGGTGGGTAGGT+GGG + chr1_4:23905658-23905677 None:intergenic 50.0%
! AGCTGCGAAACAGAGCATTC+CGG + chr1_4:23905685-23905704 None:intergenic 50.0%
GATGAAATTTGCCGCGGCTT+CGG + chr1_4:23905740-23905759 None:intergenic 50.0%
GGTGCAGATGAAATTTGCCG+CGG + chr1_4:23905746-23905765 None:intergenic 50.0%
! GGTTTTGCCATGCTTTGTGC+TGG - chr1_4:23905865-23905884 Msa0157040:three_prime_UTR 50.0%
TATCACCAGCGGCTCTATTG+CGG - chr1_4:23906110-23906129 Msa0157040:CDS 50.0%
! CACAGGGTTTGTTTACCCTG+TGG - chr1_4:23906176-23906195 Msa0157040:CDS 50.0%
!!! CATTGGTTTTGGTCCGGTGA+TGG - chr1_4:23906204-23906223 Msa0157040:CDS 50.0%
!! GTTTTGGTCCGGTGATGGTT+GGG - chr1_4:23906209-23906228 Msa0157040:CDS 50.0%
AAACAAAAGGTCCCCGGTGT+TGG + chr1_4:23906244-23906263 None:intergenic 50.0%
! AACACCGGGGACCTTTTGTT+TGG - chr1_4:23906243-23906262 Msa0157040:CDS 50.0%
! TGACTCCGGTGCCAAACAAA+AGG + chr1_4:23906257-23906276 None:intergenic 50.0%
!! TGGCTCCGGTGTTGTTCATA+TGG - chr1_4:23906287-23906306 Msa0157040:CDS 50.0%
TTGAAGGTCCGCGAATTGGA+CGG - chr1_4:23906343-23906362 Msa0157040:CDS 50.0%
TGATCGAACCGTCCAATTCG+CGG + chr1_4:23906354-23906373 None:intergenic 50.0%
! GGTTGGTATGGTTTCAACCC+TGG - chr1_4:23906447-23906466 Msa0157040:CDS 50.0%
AACGTGACCGATGTCTGCAA+CGG - chr1_4:23906763-23906782 Msa0157040:intron 50.0%
AGGTTCTACAACGGAACACC+CGG + chr1_4:23906818-23906837 None:intergenic 50.0%
GGTGTTCCGTTGTAGAACCT+TGG - chr1_4:23906818-23906837 Msa0157040:CDS 50.0%
TGCTGCCCAAGGTTCTACAA+CGG + chr1_4:23906827-23906846 None:intergenic 50.0%
CCACATACAATTGCTGCCCA+AGG + chr1_4:23906838-23906857 None:intergenic 50.0%
CCTTGGGCAGCAATTGTATG+TGG - chr1_4:23906835-23906854 Msa0157040:CDS 50.0%
AATCGCGTGCAACAAACTCG+CGG - chr1_4:23906879-23906898 Msa0157040:CDS 50.0%
GAAGCAGCACAATTACACGG+TGG - chr1_4:23906928-23906947 Msa0157040:CDS 50.0%
CCAGTTTACCCGGATAAACC+TGG + chr1_4:23907011-23907030 None:intergenic 50.0%
CCAGGTTTATCCGGGTAAAC+TGG - chr1_4:23907008-23907027 Msa0157040:CDS 50.0%
GTAAACTGGGTCGACCCTAT+GGG - chr1_4:23907022-23907041 Msa0157040:CDS 50.0%
! GGGTTATTTATGGGTGGTGG+AGG - chr1_4:23907042-23907061 Msa0157040:CDS 50.0%
TGGGTGGGTAAGTGCAACTA+TGG - chr1_4:23907107-23907126 Msa0157040:CDS 50.0%
GGGTGGGTAAGTGCAACTAT+GGG - chr1_4:23907108-23907127 Msa0157040:CDS 50.0%
GGTATGGATTTGACCCGACA+TGG - chr1_4:23907195-23907214 Msa0157040:CDS 50.0%
ATGGATTTGACCCGACATGG+TGG - chr1_4:23907198-23907217 Msa0157040:CDS 50.0%
TGGATTTGACCCGACATGGT+GGG - chr1_4:23907199-23907218 Msa0157040:CDS 50.0%
GTAAGGAAGGATCCAACCGT+TGG - chr1_4:23907464-23907483 Msa0157040:CDS 50.0%
! GACATGTTTGGTGGGTAGGT+GGG + chr1_4:23905658-23905677 None:intergenic 50.0%
! AGCTGCGAAACAGAGCATTC+CGG + chr1_4:23905685-23905704 None:intergenic 50.0%
GATGAAATTTGCCGCGGCTT+CGG + chr1_4:23905740-23905759 None:intergenic 50.0%
GGTGCAGATGAAATTTGCCG+CGG + chr1_4:23905746-23905765 None:intergenic 50.0%
! GGTTTTGCCATGCTTTGTGC+TGG - chr1_4:23905865-23905884 Msa0157040:three_prime_UTR 50.0%
TATCACCAGCGGCTCTATTG+CGG - chr1_4:23906110-23906129 Msa0157040:CDS 50.0%
! CACAGGGTTTGTTTACCCTG+TGG - chr1_4:23906176-23906195 Msa0157040:CDS 50.0%
!!! CATTGGTTTTGGTCCGGTGA+TGG - chr1_4:23906204-23906223 Msa0157040:CDS 50.0%
!! GTTTTGGTCCGGTGATGGTT+GGG - chr1_4:23906209-23906228 Msa0157040:CDS 50.0%
AAACAAAAGGTCCCCGGTGT+TGG + chr1_4:23906244-23906263 None:intergenic 50.0%
! AACACCGGGGACCTTTTGTT+TGG - chr1_4:23906243-23906262 Msa0157040:CDS 50.0%
! TGACTCCGGTGCCAAACAAA+AGG + chr1_4:23906257-23906276 None:intergenic 50.0%
!! TGGCTCCGGTGTTGTTCATA+TGG - chr1_4:23906287-23906306 Msa0157040:CDS 50.0%
TTGAAGGTCCGCGAATTGGA+CGG - chr1_4:23906343-23906362 Msa0157040:CDS 50.0%
TGATCGAACCGTCCAATTCG+CGG + chr1_4:23906354-23906373 None:intergenic 50.0%
! GGTTGGTATGGTTTCAACCC+TGG - chr1_4:23906447-23906466 Msa0157040:CDS 50.0%
AACGTGACCGATGTCTGCAA+CGG - chr1_4:23906763-23906782 Msa0157040:intron 50.0%
AGGTTCTACAACGGAACACC+CGG + chr1_4:23906818-23906837 None:intergenic 50.0%
GGTGTTCCGTTGTAGAACCT+TGG - chr1_4:23906818-23906837 Msa0157040:CDS 50.0%
TGCTGCCCAAGGTTCTACAA+CGG + chr1_4:23906827-23906846 None:intergenic 50.0%
CCACATACAATTGCTGCCCA+AGG + chr1_4:23906838-23906857 None:intergenic 50.0%
CCTTGGGCAGCAATTGTATG+TGG - chr1_4:23906835-23906854 Msa0157040:CDS 50.0%
AATCGCGTGCAACAAACTCG+CGG - chr1_4:23906879-23906898 Msa0157040:CDS 50.0%
GAAGCAGCACAATTACACGG+TGG - chr1_4:23906928-23906947 Msa0157040:CDS 50.0%
CCAGTTTACCCGGATAAACC+TGG + chr1_4:23907011-23907030 None:intergenic 50.0%
CCAGGTTTATCCGGGTAAAC+TGG - chr1_4:23907008-23907027 Msa0157040:CDS 50.0%
GTAAACTGGGTCGACCCTAT+GGG - chr1_4:23907022-23907041 Msa0157040:CDS 50.0%
! GGGTTATTTATGGGTGGTGG+AGG - chr1_4:23907042-23907061 Msa0157040:CDS 50.0%
TGGGTGGGTAAGTGCAACTA+TGG - chr1_4:23907107-23907126 Msa0157040:CDS 50.0%
GGGTGGGTAAGTGCAACTAT+GGG - chr1_4:23907108-23907127 Msa0157040:CDS 50.0%
GGTATGGATTTGACCCGACA+TGG - chr1_4:23907195-23907214 Msa0157040:CDS 50.0%
ATGGATTTGACCCGACATGG+TGG - chr1_4:23907198-23907217 Msa0157040:CDS 50.0%
TGGATTTGACCCGACATGGT+GGG - chr1_4:23907199-23907218 Msa0157040:CDS 50.0%
GTAAGGAAGGATCCAACCGT+TGG - chr1_4:23907464-23907483 Msa0157040:CDS 50.0%
! CGACATGTTTGGTGGGTAGG+TGG + chr1_4:23905659-23905678 None:intergenic 55.0%
! CAGCGACATGTTTGGTGGGT+AGG + chr1_4:23905662-23905681 None:intergenic 55.0%
CATTCCGGCAGCGACATGTT+TGG + chr1_4:23905670-23905689 None:intergenic 55.0%
!! GCTTTTGCTATAGCAGCCGC+TGG - chr1_4:23906087-23906106 Msa0157040:CDS 55.0%
!! GGTTTTGGTCCGGTGATGGT+TGG - chr1_4:23906208-23906227 Msa0157040:CDS 55.0%
GGTGCCAAACAAAAGGTCCC+CGG + chr1_4:23906250-23906269 None:intergenic 55.0%
!! GGGGACCTTTTGTTTGGCAC+CGG - chr1_4:23906249-23906268 Msa0157040:CDS 55.0%
TTATGGGCAATGGAGTGCGG+TGG - chr1_4:23906654-23906673 Msa0157040:intron 55.0%
TATGGGCAATGGAGTGCGGT+GGG - chr1_4:23906655-23906674 Msa0157040:intron 55.0%
GACGACATTAGCCGGTTGCA+CGG - chr1_4:23906693-23906712 Msa0157040:intron 55.0%
ATCGGTCACGTTCCAGTGAC+CGG + chr1_4:23906755-23906774 None:intergenic 55.0%
!! GTCTGCAACGGATTACTCGG+CGG - chr1_4:23906775-23906794 Msa0157040:intron 55.0%
TTCTACAACGGAACACCCGG+CGG + chr1_4:23906815-23906834 None:intergenic 55.0%
GTGCAACAAACTCGCGGAGA+AGG - chr1_4:23906885-23906904 Msa0157040:CDS 55.0%
GCACAATTACACGGTGGGTG+TGG - chr1_4:23906934-23906953 Msa0157040:CDS 55.0%
TAGGGTCGACCCAGTTTACC+CGG + chr1_4:23907021-23907040 None:intergenic 55.0%
GGTAAACTGGGTCGACCCTA+TGG - chr1_4:23907021-23907040 Msa0157040:CDS 55.0%
CTGTGGTCTCCCACCCTAAA+TGG + chr1_4:23907632-23907651 None:intergenic 55.0%
TTAGGGTGGGAGACCACAGT+AGG - chr1_4:23907633-23907652 Msa0157040:exon 55.0%
CACAGTAGGTCTCCTACCGT+GGG - chr1_4:23907647-23907666 Msa0157040:five_prime_UTR 55.0%
AAATGGGAGTCTCCCACGGT+AGG + chr1_4:23907662-23907681 None:intergenic 55.0%
! CGACATGTTTGGTGGGTAGG+TGG + chr1_4:23905659-23905678 None:intergenic 55.0%
! CAGCGACATGTTTGGTGGGT+AGG + chr1_4:23905662-23905681 None:intergenic 55.0%
CATTCCGGCAGCGACATGTT+TGG + chr1_4:23905670-23905689 None:intergenic 55.0%
!! GCTTTTGCTATAGCAGCCGC+TGG - chr1_4:23906087-23906106 Msa0157040:CDS 55.0%
!! GGTTTTGGTCCGGTGATGGT+TGG - chr1_4:23906208-23906227 Msa0157040:CDS 55.0%
GGTGCCAAACAAAAGGTCCC+CGG + chr1_4:23906250-23906269 None:intergenic 55.0%
!! GGGGACCTTTTGTTTGGCAC+CGG - chr1_4:23906249-23906268 Msa0157040:CDS 55.0%
TTATGGGCAATGGAGTGCGG+TGG - chr1_4:23906654-23906673 Msa0157040:intron 55.0%
TATGGGCAATGGAGTGCGGT+GGG - chr1_4:23906655-23906674 Msa0157040:intron 55.0%
GACGACATTAGCCGGTTGCA+CGG - chr1_4:23906693-23906712 Msa0157040:intron 55.0%
ATCGGTCACGTTCCAGTGAC+CGG + chr1_4:23906755-23906774 None:intergenic 55.0%
!! GTCTGCAACGGATTACTCGG+CGG - chr1_4:23906775-23906794 Msa0157040:intron 55.0%
TTCTACAACGGAACACCCGG+CGG + chr1_4:23906815-23906834 None:intergenic 55.0%
GTGCAACAAACTCGCGGAGA+AGG - chr1_4:23906885-23906904 Msa0157040:CDS 55.0%
GCACAATTACACGGTGGGTG+TGG - chr1_4:23906934-23906953 Msa0157040:CDS 55.0%
TAGGGTCGACCCAGTTTACC+CGG + chr1_4:23907021-23907040 None:intergenic 55.0%
GGTAAACTGGGTCGACCCTA+TGG - chr1_4:23907021-23907040 Msa0157040:CDS 55.0%
CTGTGGTCTCCCACCCTAAA+TGG + chr1_4:23907632-23907651 None:intergenic 55.0%
TTAGGGTGGGAGACCACAGT+AGG - chr1_4:23907633-23907652 Msa0157040:exon 55.0%
CACAGTAGGTCTCCTACCGT+GGG - chr1_4:23907647-23907666 Msa0157040:five_prime_UTR 55.0%
AAATGGGAGTCTCCCACGGT+AGG + chr1_4:23907662-23907681 None:intergenic 55.0%
CCGGCAGCGACATGTTTGGT+GGG + chr1_4:23905666-23905685 None:intergenic 60.0%
CCCACCAAACATGTCGCTGC+CGG - chr1_4:23905663-23905682 Msa0157040:three_prime_UTR 60.0%
TCCGGCAGCGACATGTTTGG+TGG + chr1_4:23905667-23905686 None:intergenic 60.0%
TCGCAGCTCGCGCAGTTCAT+CGG - chr1_4:23905697-23905716 Msa0157040:three_prime_UTR 60.0%
AGAGCCGCTGGTGATACCAG+CGG + chr1_4:23906106-23906125 None:intergenic 60.0%
TCGTTCCGCAATAGAGCCGC+TGG + chr1_4:23906118-23906137 None:intergenic 60.0%
TGCGCTAGCCCAACCATCAC+CGG + chr1_4:23906220-23906239 None:intergenic 60.0%
!! TGGGCTAGCGCAACCAACAC+CGG - chr1_4:23906228-23906247 Msa0157040:CDS 60.0%
CGATCATTCTGGTCGAGCCG+TGG - chr1_4:23906368-23906387 Msa0157040:CDS 60.0%
! ACTGTGTCCGCGAAGTGCCA+CGG + chr1_4:23906388-23906407 None:intergenic 60.0%
ATGGGCAATGGAGTGCGGTG+GGG - chr1_4:23906656-23906675 Msa0157040:intron 60.0%
GCGGTGACGACGACATTAGC+CGG - chr1_4:23906685-23906704 Msa0157040:intron 60.0%
CGTTAGAGCTGCCGTGCAAC+CGG + chr1_4:23906707-23906726 None:intergenic 60.0%
GGTTTCGCTGCGATAACCGC+CGG - chr1_4:23906796-23906815 Msa0157040:intron 60.0%
GTTTCGCTGCGATAACCGCC+GGG - chr1_4:23906797-23906816 Msa0157040:intron 60.0%
CCACGGTAGGAGACCTACTG+TGG + chr1_4:23907649-23907668 None:intergenic 60.0%
CCACAGTAGGTCTCCTACCG+TGG - chr1_4:23907646-23907665 Msa0157040:five_prime_UTR 60.0%
CCGGCAGCGACATGTTTGGT+GGG + chr1_4:23905666-23905685 None:intergenic 60.0%
CCCACCAAACATGTCGCTGC+CGG - chr1_4:23905663-23905682 Msa0157040:three_prime_UTR 60.0%
TCCGGCAGCGACATGTTTGG+TGG + chr1_4:23905667-23905686 None:intergenic 60.0%
TCGCAGCTCGCGCAGTTCAT+CGG - chr1_4:23905697-23905716 Msa0157040:three_prime_UTR 60.0%
AGAGCCGCTGGTGATACCAG+CGG + chr1_4:23906106-23906125 None:intergenic 60.0%
TCGTTCCGCAATAGAGCCGC+TGG + chr1_4:23906118-23906137 None:intergenic 60.0%
TGCGCTAGCCCAACCATCAC+CGG + chr1_4:23906220-23906239 None:intergenic 60.0%
!! TGGGCTAGCGCAACCAACAC+CGG - chr1_4:23906228-23906247 Msa0157040:CDS 60.0%
CGATCATTCTGGTCGAGCCG+TGG - chr1_4:23906368-23906387 Msa0157040:CDS 60.0%
! ACTGTGTCCGCGAAGTGCCA+CGG + chr1_4:23906388-23906407 None:intergenic 60.0%
ATGGGCAATGGAGTGCGGTG+GGG - chr1_4:23906656-23906675 Msa0157040:intron 60.0%
GCGGTGACGACGACATTAGC+CGG - chr1_4:23906685-23906704 Msa0157040:intron 60.0%
CGTTAGAGCTGCCGTGCAAC+CGG + chr1_4:23906707-23906726 None:intergenic 60.0%
GGTTTCGCTGCGATAACCGC+CGG - chr1_4:23906796-23906815 Msa0157040:intron 60.0%
GTTTCGCTGCGATAACCGCC+GGG - chr1_4:23906797-23906816 Msa0157040:intron 60.0%
CCACGGTAGGAGACCTACTG+TGG + chr1_4:23907649-23907668 None:intergenic 60.0%
CCACAGTAGGTCTCCTACCG+TGG - chr1_4:23907646-23907665 Msa0157040:five_prime_UTR 60.0%
!! CTTCGGCGTTGGTGGCGTTG+GGG + chr1_4:23905723-23905742 None:intergenic 65.0%
!! GCTTCGGCGTTGGTGGCGTT+GGG + chr1_4:23905724-23905743 None:intergenic 65.0%
ATTTGCCGCGGCTTCGGCGT+TGG + chr1_4:23905734-23905753 None:intergenic 65.0%
! AGCAGCAGCGTCGAGGACGT+TGG + chr1_4:23905929-23905948 None:intergenic 65.0%
AACGTCCTCGACGCTGCTGC+TGG - chr1_4:23905928-23905947 Msa0157040:three_prime_UTR 65.0%
GCAGCCGCTGGTATCACCAG+CGG - chr1_4:23906099-23906118 Msa0157040:CDS 65.0%
! GGGCTAGCGCAACCAACACC+GGG - chr1_4:23906229-23906248 Msa0157040:CDS 65.0%
GGCTAGCGCAACCAACACCG+GGG - chr1_4:23906230-23906249 Msa0157040:CDS 65.0%
ATGGAGTGCGGTGGGGAGGA+CGG - chr1_4:23906663-23906682 Msa0157040:intron 65.0%
!! CTTCGGCGTTGGTGGCGTTG+GGG + chr1_4:23905723-23905742 None:intergenic 65.0%
!! GCTTCGGCGTTGGTGGCGTT+GGG + chr1_4:23905724-23905743 None:intergenic 65.0%
ATTTGCCGCGGCTTCGGCGT+TGG + chr1_4:23905734-23905753 None:intergenic 65.0%
! AGCAGCAGCGTCGAGGACGT+TGG + chr1_4:23905929-23905948 None:intergenic 65.0%
AACGTCCTCGACGCTGCTGC+TGG - chr1_4:23905928-23905947 Msa0157040:three_prime_UTR 65.0%
GCAGCCGCTGGTATCACCAG+CGG - chr1_4:23906099-23906118 Msa0157040:CDS 65.0%
! GGGCTAGCGCAACCAACACC+GGG - chr1_4:23906229-23906248 Msa0157040:CDS 65.0%
GGCTAGCGCAACCAACACCG+GGG - chr1_4:23906230-23906249 Msa0157040:CDS 65.0%
ATGGAGTGCGGTGGGGAGGA+CGG - chr1_4:23906663-23906682 Msa0157040:intron 65.0%
!! GGCTTCGGCGTTGGTGGCGT+TGG + chr1_4:23905725-23905744 None:intergenic 70.0%
GTCCTCGACGCTGCTGCTGG+TGG - chr1_4:23905931-23905950 Msa0157040:three_prime_UTR 70.0%
GGTCGAGCCGTGGCACTTCG+CGG - chr1_4:23906378-23906397 Msa0157040:CDS 70.0%
GGCAATGGAGTGCGGTGGGG+AGG - chr1_4:23906659-23906678 Msa0157040:intron 70.0%
TACACGGTGGGTGTGGCGCG+TGG - chr1_4:23906941-23906960 Msa0157040:CDS 70.0%
ACACGGTGGGTGTGGCGCGT+GGG - chr1_4:23906942-23906961 Msa0157040:CDS 70.0%
!! GGCTTCGGCGTTGGTGGCGT+TGG + chr1_4:23905725-23905744 None:intergenic 70.0%
GTCCTCGACGCTGCTGCTGG+TGG - chr1_4:23905931-23905950 Msa0157040:three_prime_UTR 70.0%
GGTCGAGCCGTGGCACTTCG+CGG - chr1_4:23906378-23906397 Msa0157040:CDS 70.0%
GGCAATGGAGTGCGGTGGGG+AGG - chr1_4:23906659-23906678 Msa0157040:intron 70.0%
TACACGGTGGGTGTGGCGCG+TGG - chr1_4:23906941-23906960 Msa0157040:CDS 70.0%
ACACGGTGGGTGTGGCGCGT+GGG - chr1_4:23906942-23906961 Msa0157040:CDS 70.0%
CGCCACCAACGCCGAAGCCG+CGG - chr1_4:23905726-23905745 Msa0157040:three_prime_UTR 75.0%
! TGCCGCGGCTTCGGCGTTGG+TGG + chr1_4:23905731-23905750 None:intergenic 75.0%
CGCCACCAGCAGCAGCGTCG+AGG + chr1_4:23905936-23905955 None:intergenic 75.0%
GAGTGCGGTGGGGAGGACGG+CGG - chr1_4:23906666-23906685 Msa0157040:intron 75.0%
CACGGTGGGTGTGGCGCGTG+GGG - chr1_4:23906943-23906962 Msa0157040:CDS 75.0%
CGCCACCAACGCCGAAGCCG+CGG - chr1_4:23905726-23905745 Msa0157040:three_prime_UTR 75.0%
! TGCCGCGGCTTCGGCGTTGG+TGG + chr1_4:23905731-23905750 None:intergenic 75.0%
CGCCACCAGCAGCAGCGTCG+AGG + chr1_4:23905936-23905955 None:intergenic 75.0%
GAGTGCGGTGGGGAGGACGG+CGG - chr1_4:23906666-23906685 Msa0157040:intron 75.0%
CACGGTGGGTGTGGCGCGTG+GGG - chr1_4:23906943-23906962 Msa0157040:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 23905513 23907805 23905513 ID=Msa0157040;Name=Msa0157040
chr1_4 mRNA 23905513 23907805 23905513 ID=Msa0157040-mRNA-1;Parent=Msa0157040;Name=Msa0157040-mRNA-1;_AED=0.01;_eAED=0.01;_QI=160|1|1|1|1|1|2|479|503
chr1_4 exon 23905513 23906671 23905513 ID=Msa0157040-mRNA-1:exon:8321;Parent=Msa0157040-mRNA-1
chr1_4 exon 23906814 23907805 23906814 ID=Msa0157040-mRNA-1:exon:8320;Parent=Msa0157040-mRNA-1
chr1_4 five_prime_UTR 23907646 23907805 23907646 ID=Msa0157040-mRNA-1:five_prime_utr;Parent=Msa0157040-mRNA-1
chr1_4 CDS 23906814 23907645 23906814 ID=Msa0157040-mRNA-1:cds;Parent=Msa0157040-mRNA-1
chr1_4 CDS 23905992 23906671 23905992 ID=Msa0157040-mRNA-1:cds;Parent=Msa0157040-mRNA-1
chr1_4 three_prime_UTR 23905513 23905991 23905513 ID=Msa0157040-mRNA-1:three_prime_utr;Parent=Msa0157040-mRNA-1
Gene Sequence

>Msa0157040

ATGTCGCTGCCGGAATGCTCTGTTTCGCAGCTCGCGCAGTTCATCGGCCCCAACGCCACCAACGCCGAAGCCGCGGCAAATTTCATCTGCACCCAGTTCACAGCAGTGTCAAACAGATTCGTAGACACACAATTCGCTGTTGACAACACCTATCTTCTATTCTCAGCTTACCTTGTTTTCTCTATGCAACTTGGTTTTGCCATGCTTTGTGCTGGTTCAGTTCGTGCTAAGAACACCATGAACATCATGCTTACCAACGTCCTCGACGCTGCTGCTGGTGGCGTTTTCTACTATCTCTTCGGTTTTGCCTTTGCTTTTGGAACACCTTCAAATGGTTTCATTGGAAAACATTTCTTTGGTCTGAAGGATGTTCCGACTGAAAATTTTGATTACAGTTATTTTCTCTATCAATGGGCTTTTGCTATAGCAGCCGCTGGTATCACCAGCGGCTCTATTGCGGAACGAACTCAGTTCGTTGCGTATCTTATTTACTCATCGTTTCTCACAGGGTTTGTTTACCCTGTGGTTTCTCATTGGTTTTGGTCCGGTGATGGTTGGGCTAGCGCAACCAACACCGGGGACCTTTTGTTTGGCACCGGAGTCATTGATTTTGCTGGCTCCGGTGTTGTTCATATGGTTGGTGGTATTGCTGGTTTATGGGGAGCACTTATTGAAGGTCCGCGAATTGGACGGTTCGATCATTCTGGTCGAGCCGTGGCACTTCGCGGACACAGTGCCTCTCTTGTTGTTCTTGGCACTTTCATGCTTTGGTTTGGTTGGTATGGTTTCAACCCTGGTTCCTTCACCAAGATTCTCAGTCCTTATAATTCAGGTACTTATTATGGGCAATGGAGTGCGGTGGGGAGGACGGCGGTGACGACGACATTAGCCGGTTGCACGGCAGCTCTAACGACACTTTTCGGGAAAAGAATTCTCTCCGGTCACTGGAACGTGACCGATGTCTGCAACGGATTACTCGGCGGTTTCGCTGCGATAACCGCCGGGTGTTCCGTTGTAGAACCTTGGGCAGCAATTGTATGTGGCTTCATCGCCGCTATTGTTTTAATCGCGTGCAACAAACTCGCGGAGAAGGTGCGTTACGATGATCCATTAGAAGCAGCACAATTACACGGTGGGTGTGGCGCGTGGGGAATAATATTCACCGCTTTGTTTGCAAAAGAAGAGTATGTGAACCAGGTTTATCCGGGTAAACTGGGTCGACCCTATGGGTTATTTATGGGTGGTGGAGGGAAATTATTAGGGGCACATGTGATACAAATTTTGGTTATTATTGGGTGGGTAAGTGCAACTATGGGTCCACTATTCTTTGTTTTGAATAAATTGAAGTTGTTGAGGATTTCAACTGAAGATGAACTTGCGGGTATGGATTTGACCCGACATGGTGGGTTTGCTTATGCTTATGAAGATGAAGGATCACATAGAAATGGGACTCAATTGAGGAAAATTGATCATAATTCTTCTTCCACTCCTACTCCAACTACAGATTTGTGA
Protein sequence

>Msa0157040

MSLPECSVSQLAQFIGPNATNAEAAANFICTQFTAVSNRFVDTQFAVDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGVFYYLFGFAFAFGTPSNGFIGKHFFGLKDVPTENFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSGDGWASATNTGDLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHSGRAVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSPYNSGTYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFIAAIVLIACNKLAEKVRYDDPLEAAQLHGGCGAWGIIFTALFAKEEYVNQVYPGKLGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFVLNKLKLLRISTEDELAGMDLTRHGGFAYAYEDEGSHRNGTQLRKIDHNSSSTPTPTTDL*