AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1436600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1436600 MtrunA17_Chr4g0068171 97.409 193 5 0 1 193 1 193 6.68e-141 390
Msa1436600 MtrunA17_Chr2g0294701 94.301 193 11 0 1 193 1 193 6.01e-138 383
Msa1436600 MtrunA17_Chr7g0271761 90.155 193 19 0 1 193 1 193 2.02e-133 371
Msa1436600 MtrunA17_Chr4g0072861 35.227 176 102 1 18 193 15 178 9.68e-29 105
Msa1436600 MtrunA17_Chr5g0401761 32.768 177 103 2 18 192 15 177 8.54e-26 98.2
Msa1436600 MtrunA17_Chr5g0395631 30.366 191 113 2 3 193 8 178 5.92e-25 95.9
Msa1436600 MtrunA17_Chr8g0373271 34.503 171 101 1 22 192 18 177 7.46e-25 95.5
Msa1436600 MtrunA17_Chr4g0039591 30.366 191 113 2 3 193 8 178 1.02e-24 95.5
Msa1436600 MtrunA17_Chr5g0413451 32.203 177 104 2 18 192 15 177 1.91e-24 94.4
Msa1436600 MtrunA17_Chr5g0413441 32.203 177 104 2 18 192 15 177 1.91e-24 94.4
Msa1436600 MtrunA17_Chr7g0270301 32.203 177 104 2 18 192 15 177 1.97e-24 94.4
Msa1436600 MtrunA17_Chr6g0450081 32.203 177 104 2 18 192 15 177 1.99e-24 94.4
Msa1436600 MtrunA17_Chr1g0194261 32.203 177 104 2 18 192 15 177 2.19e-24 94.4
Msa1436600 MtrunA17_Chr5g0434561 35.526 152 96 2 1 151 1 151 2.18e-23 91.7
Msa1436600 MtrunA17_Chr1g0188111 34.503 171 100 2 19 189 16 174 7.94e-23 90.1
Msa1436600 MtrunA17_Chr4g0012371 31.818 176 101 3 22 193 2 162 9.01e-23 89.7
Msa1436600 MtrunA17_Chr2g0287721 37.267 161 83 4 3 151 1 155 9.85e-23 90.5
Msa1436600 MtrunA17_Chr5g0395641 28.866 194 114 4 3 193 8 180 3.20e-22 89.0
Msa1436600 MtrunA17_Chr5g0401071 30.928 194 120 3 1 193 1 181 4.66e-22 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1436600 AT4G02080.1 91.192 193 17 0 1 193 1 193 9.51e-135 375
Msa1436600 AT3G62560.1 91.667 192 16 0 1 192 1 192 1.35e-133 372
Msa1436600 AT1G56330.1 91.667 192 16 0 1 192 1 192 8.46e-133 370
Msa1436600 AT1G09180.1 87.565 193 24 0 1 193 1 193 7.98e-127 355
Msa1436600 AT1G02620.1 86.486 111 15 0 83 193 12 122 4.57e-69 206
Msa1436600 AT2G24765.1 35.795 176 101 1 18 193 15 178 1.79e-28 105
Msa1436600 AT3G49870.1 32.990 194 116 3 1 193 1 181 3.32e-26 99.4
Msa1436600 AT5G67560.1 32.474 194 117 3 1 193 1 181 1.92e-25 97.4
Msa1436600 AT3G49870.2 34.118 170 99 2 25 193 5 162 4.79e-25 95.9
Msa1436600 AT2G18390.1 34.503 171 101 1 22 192 18 177 6.79e-25 96.3
Msa1436600 AT5G17060.2 30.890 191 112 2 3 193 8 178 7.78e-25 96.3
Msa1436600 AT5G17060.1 30.890 191 112 2 3 193 8 178 7.78e-25 96.3
Msa1436600 AT5G14670.2 32.203 177 104 2 18 192 15 177 2.63e-24 94.4
Msa1436600 AT5G14670.3 32.203 177 104 2 18 192 15 177 2.63e-24 94.4
Msa1436600 AT1G23490.1 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1436600 AT1G70490.2 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1436600 AT1G70490.7 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1436600 AT1G70490.4 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1436600 AT1G70490.3 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1436600 AT1G70490.1 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1436600 AT1G70490.6 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1436600 AT1G70490.5 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1436600 AT2G47170.2 32.203 177 104 2 18 192 15 177 3.09e-24 94.4
Msa1436600 AT2G47170.1 32.203 177 104 2 18 192 15 177 3.09e-24 94.4
Msa1436600 AT2G47170.3 32.203 177 104 2 18 192 15 177 3.09e-24 94.4
Msa1436600 AT3G62290.3 32.203 177 104 2 18 192 15 177 3.12e-24 94.4
Msa1436600 AT3G62290.1 32.203 177 104 2 18 192 15 177 3.12e-24 94.4
Msa1436600 AT3G62290.2 32.203 177 104 2 18 192 15 177 3.12e-24 94.4
Msa1436600 AT5G37680.1 36.601 153 95 2 1 152 1 152 3.18e-24 94.4
Msa1436600 AT1G10630.1 32.203 177 104 2 18 192 15 177 3.22e-24 94.4
Msa1436600 AT1G10630.2 32.203 177 104 2 18 192 15 177 3.22e-24 94.4
Msa1436600 AT5G14670.1 32.203 177 104 2 18 192 15 177 3.32e-24 94.4
Msa1436600 AT2G24765.2 42.478 113 65 0 18 130 15 127 3.48e-24 92.8
Msa1436600 AT3G03120.1 30.890 191 112 3 3 193 8 178 2.53e-23 92.4
Msa1436600 AT3G22950.1 33.908 174 103 3 19 192 16 177 8.90e-23 90.5
Msa1436600 AT3G22950.2 33.908 174 103 3 19 192 16 177 8.90e-23 90.5
Msa1436600 AT2G15310.1 31.073 177 110 1 16 192 13 177 3.34e-22 89.7
Msa1436600 AT3G49860.1 35.000 140 90 1 15 153 6 145 9.69e-22 87.8
Msa1436600 AT3G03120.2 32.824 131 80 1 3 133 8 130 7.81e-21 84.3
Msa1436600 AT5G52210.1 36.913 149 76 3 15 148 7 152 7.33e-20 83.6
Msa1436600 AT5G52210.2 36.913 149 76 3 15 148 7 152 7.33e-20 83.6
Msa1436600 AT5G37680.2 40.777 103 61 0 50 152 3 105 1.50e-19 80.9
Msa1436600 AT1G02430.2 31.206 141 89 4 18 151 15 154 3.36e-15 70.1
Msa1436600 AT1G02430.1 31.206 141 89 4 18 151 15 154 5.29e-15 70.1

Find 60 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGCTCCTTCTTTGATTC+TGG 0.179657 tig0027944:+53788 None:intergenic
GCTTTCTCAGTATATTAAAT+AGG 0.199871 tig0027944:-53537 Msa1436600:exon
TATACTTTGCTCATGTAAAT+TGG 0.251390 tig0027944:-53438 Msa1436600:three_prime_UTR
CTTCGGAAGAATTGAGTATT+GGG 0.315137 tig0027944:-54540 Msa1436600:CDS
AATGTACCTTTCCTTATCTT+AGG 0.333519 tig0027944:-53737 Msa1436600:CDS
ATTGGATAATAATAGTTAAA+TGG 0.341144 tig0027944:-53420 Msa1436600:three_prime_UTR
TCCAGACTCTACGAGCAATT+TGG 0.346671 tig0027944:+54482 None:intergenic
TGACTCCAATGTCCGTCCTT+TGG 0.348016 tig0027944:-53615 Msa1436600:CDS
TTTGACGTGACTGTGGTCTT+TGG 0.350821 tig0027944:-54999 Msa1436600:five_prime_UTR
ACCAAATTGCTCGTAGAGTC+TGG 0.380274 tig0027944:-54483 Msa1436600:CDS
TCCAGTTGTAGGGGTTTGAT+TGG 0.387214 tig0027944:+54925 None:intergenic
GTTGTAGGGGTTTGATTGGT+TGG 0.389067 tig0027944:+54929 None:intergenic
TATGGAATTCTTGCTACCCT+TGG 0.394725 tig0027944:-54771 Msa1436600:CDS
AATTGCAGAATTAATAATAG+TGG 0.399953 tig0027944:-53315 Msa1436600:three_prime_UTR
ACCAATCAAACCCCTACAAC+TGG 0.401710 tig0027944:-54926 Msa1436600:five_prime_UTR
CTTTCTCAGTATATTAAATA+GGG 0.415038 tig0027944:-53536 Msa1436600:exon
CAATCTTGTTTCCTAAGATA+AGG 0.427363 tig0027944:+53726 None:intergenic
ATACTCAATTCTTCCGAAGT+TGG 0.431342 tig0027944:+54544 None:intergenic
ATTCAGAAATTCCAGTTGTA+GGG 0.440614 tig0027944:+54915 None:intergenic
ACTTCGGAAGAATTGAGTAT+TGG 0.450496 tig0027944:-54541 Msa1436600:CDS
GATTCAGAAATTCCAGTTGT+AGG 0.456614 tig0027944:+54914 None:intergenic
GATTGGTTGGTACGCGTCAT+CGG 0.459740 tig0027944:+54942 None:intergenic
ATTGTTCGCAAGATGGGATA+TGG 0.464211 tig0027944:-53575 Msa1436600:CDS
TGTCTTCAGCGTATATATAG+TGG 0.466437 tig0027944:+54886 None:intergenic
TCATCCTCTGATGCAGCATA+AGG 0.468463 tig0027944:+53698 None:intergenic
TGTAGTATTGTTCGCAAGAT+GGG 0.483741 tig0027944:-53581 Msa1436600:CDS
CTCCAATGTCCGTCCTTTGG+AGG 0.487360 tig0027944:-53612 Msa1436600:CDS
TCCGAAGTTGGATGTTGTGT+TGG 0.497799 tig0027944:+54556 None:intergenic
TTACTTAAAAGAAATGGTAC+AGG 0.501012 tig0027944:+55092 None:intergenic
TAGTTCTGAAACTTGCATGT+AGG 0.504331 tig0027944:-53377 Msa1436600:three_prime_UTR
GGATTGACTAACTTCACTAC+AGG 0.520704 tig0027944:-53659 Msa1436600:CDS
GTGTAGTATTGTTCGCAAGA+TGG 0.522465 tig0027944:-53582 Msa1436600:CDS
TCCAGAATCAAAGAAGGAGC+TGG 0.545473 tig0027944:-53789 Msa1436600:CDS
CTGGAGGGACTATTATGCTC+AGG 0.546159 tig0027944:-54464 Msa1436600:intron
TAATAATTAGAGTAAATCTG+TGG 0.546406 tig0027944:-55030 Msa1436600:five_prime_UTR
CATTCCTTATGCTGCATCAG+AGG 0.549318 tig0027944:-53702 Msa1436600:CDS
AATAATTAGAGTAAATCTGT+GGG 0.550383 tig0027944:-55029 Msa1436600:five_prime_UTR
GACTAACTTCACTACAGGCA+AGG 0.551563 tig0027944:-53654 Msa1436600:CDS
AAGATTTCCAGAATCAAAGA+AGG 0.553734 tig0027944:-53795 Msa1436600:CDS
CTTCTTGCTGATGAGTCACT+AGG 0.554172 tig0027944:-53761 Msa1436600:CDS
CGCAAGATGGGATATGGTGA+AGG 0.562040 tig0027944:-53569 Msa1436600:CDS
CACCTCCAAAGGACGGACAT+TGG 0.563163 tig0027944:+53610 None:intergenic
ATACGCTGAAGACAAATACT+TGG 0.563987 tig0027944:-54877 Msa1436600:five_prime_UTR
TTCTTGCTACCCTTGGTCTG+TGG 0.568404 tig0027944:-54764 Msa1436600:CDS
GGTGGATGCTGTAGTCTACC+TGG 0.579563 tig0027944:-53837 Msa1436600:CDS
TTCAGAAATTCCAGTTGTAG+GGG 0.582471 tig0027944:+54916 None:intergenic
CCTTGTCAAATGCATCAACC+AGG 0.583815 tig0027944:+53819 None:intergenic
TTGTTTCCTAAGATAAGGAA+AGG 0.590342 tig0027944:+53731 None:intergenic
CCTGGTTGATGCATTTGACA+AGG 0.590610 tig0027944:-53819 Msa1436600:CDS
ACTAACTTCACTACAGGCAA+GGG 0.591515 tig0027944:-53653 Msa1436600:CDS
CTACACATGAACACCTCCAA+AGG 0.598493 tig0027944:+53599 None:intergenic
ACCAACACAACATCCAACTT+CGG 0.598906 tig0027944:-54557 Msa1436600:CDS
CTTCAGCGTATATATAGTGG+AGG 0.605705 tig0027944:+54889 None:intergenic
GATATGGTGAAGGCTTTCAG+TGG 0.632785 tig0027944:-53559 Msa1436600:CDS
ACATGAACACCTCCAAAGGA+CGG 0.637700 tig0027944:+53603 None:intergenic
AATTGCTCGTAGAGTCTGGA+GGG 0.640603 tig0027944:-54479 Msa1436600:CDS
GCTTCACATGCTCAAAGACG+AGG 0.649498 tig0027944:-54685 Msa1436600:intron
TGGTTGGTACGCGTCATCGG+AGG 0.666989 tig0027944:+54945 None:intergenic
TTCAGCGTATATATAGTGGA+GGG 0.675270 tig0027944:+54890 None:intergenic
AAATTGCTCGTAGAGTCTGG+AGG 0.706522 tig0027944:-54480 Msa1436600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTACTTAAAAGAAA+TGG + tig0027944:53409-53428 None:intergenic 10.0%
!!! AATTTTTTACTTAAAAGAAA+TGG + tig0027944:53409-53428 None:intergenic 10.0%
!!! ATAAAATGTTTCTTTTTGAT+TGG - tig0027944:53695-53714 Msa1436600:CDS 15.0%
!!! TAACCCTAAAAATAAAATTT+TGG + tig0027944:53764-53783 None:intergenic 15.0%
!!! ATGTTAATTGTAGATTTTTA+TGG - tig0027944:54628-54647 Msa1436600:intron 15.0%
!! ATTGGATAATAATAGTTAAA+TGG - tig0027944:55072-55091 Msa1436600:five_prime_UTR 15.0%
!!! ATAAAATGTTTCTTTTTGAT+TGG - tig0027944:53695-53714 Msa1436600:CDS 15.0%
!!! TAACCCTAAAAATAAAATTT+TGG + tig0027944:53764-53783 None:intergenic 15.0%
!!! ATGTTAATTGTAGATTTTTA+TGG - tig0027944:54628-54647 Msa1436600:intron 15.0%
!! ATTGGATAATAATAGTTAAA+TGG - tig0027944:55072-55091 Msa1436600:five_prime_UTR 15.0%
!!! TTCTCAAATTACATTTTGAA+GGG + tig0027944:53348-53367 None:intergenic 20.0%
!!! TTTCTCAAATTACATTTTGA+AGG + tig0027944:53349-53368 None:intergenic 20.0%
!! TAATAATTAGAGTAAATCTG+TGG - tig0027944:53462-53481 Msa1436600:three_prime_UTR 20.0%
!! AATAATTAGAGTAAATCTGT+GGG - tig0027944:53463-53482 Msa1436600:three_prime_UTR 20.0%
!!! AAAGAAACATTTTATTCAAC+CGG + tig0027944:53690-53709 None:intergenic 20.0%
!!! TTTCTTTTTGATTGGTTTTA+TGG - tig0027944:53703-53722 Msa1436600:CDS 20.0%
!!! AGGCCAAAATTTTATTTTTA+GGG - tig0027944:53758-53777 Msa1436600:CDS 20.0%
!!! AAAGTTTAAAGCTTTTGATT+TGG - tig0027944:53980-53999 Msa1436600:intron 20.0%
!!! AAGTTTAAAGCTTTTGATTT+GGG - tig0027944:53981-54000 Msa1436600:intron 20.0%
!! CTTTCTCAGTATATTAAATA+GGG - tig0027944:54956-54975 Msa1436600:five_prime_UTR 20.0%
!! AATTGCAGAATTAATAATAG+TGG - tig0027944:55177-55196 Msa1436600:five_prime_UTR 20.0%
!!! TTCTCAAATTACATTTTGAA+GGG + tig0027944:53348-53367 None:intergenic 20.0%
!!! TTTCTCAAATTACATTTTGA+AGG + tig0027944:53349-53368 None:intergenic 20.0%
!! TAATAATTAGAGTAAATCTG+TGG - tig0027944:53462-53481 Msa1436600:three_prime_UTR 20.0%
!! AATAATTAGAGTAAATCTGT+GGG - tig0027944:53463-53482 Msa1436600:three_prime_UTR 20.0%
!!! AAAGAAACATTTTATTCAAC+CGG + tig0027944:53690-53709 None:intergenic 20.0%
!!! TTTCTTTTTGATTGGTTTTA+TGG - tig0027944:53703-53722 Msa1436600:CDS 20.0%
!!! AGGCCAAAATTTTATTTTTA+GGG - tig0027944:53758-53777 Msa1436600:CDS 20.0%
!!! AAAGTTTAAAGCTTTTGATT+TGG - tig0027944:53980-53999 Msa1436600:intron 20.0%
!!! AAGTTTAAAGCTTTTGATTT+GGG - tig0027944:53981-54000 Msa1436600:intron 20.0%
!! CTTTCTCAGTATATTAAATA+GGG - tig0027944:54956-54975 Msa1436600:five_prime_UTR 20.0%
!! AATTGCAGAATTAATAATAG+TGG - tig0027944:55177-55196 Msa1436600:five_prime_UTR 20.0%
! TTACTTAAAAGAAATGGTAC+AGG + tig0027944:53403-53422 None:intergenic 25.0%
!!! GAGGCCAAAATTTTATTTTT+AGG - tig0027944:53757-53776 Msa1436600:CDS 25.0%
!! CAGGTAATTTCTTTTATGAA+TGG - tig0027944:54047-54066 Msa1436600:intron 25.0%
! TCTCAACCACATTTAAATTT+AGG - tig0027944:54178-54197 Msa1436600:intron 25.0%
! CTCAACCACATTTAAATTTA+GGG - tig0027944:54179-54198 Msa1436600:intron 25.0%
! TCAACCACATTTAAATTTAG+GGG - tig0027944:54180-54199 Msa1436600:intron 25.0%
! AGTGCTTTCAAAACAAATAT+GGG + tig0027944:54301-54320 None:intergenic 25.0%
! AAGTGCTTTCAAAACAAATA+TGG + tig0027944:54302-54321 None:intergenic 25.0%
! TAGTTTGAGAAAAATGAAAG+TGG - tig0027944:54418-54437 Msa1436600:intron 25.0%
! CAATGCATATGATTATGTTA+AGG + tig0027944:54559-54578 None:intergenic 25.0%
!! ATTGTAGATTTTTATGGTAC+AGG - tig0027944:54634-54653 Msa1436600:intron 25.0%
!! GATGAATTACGTTTTCATTT+GGG - tig0027944:54812-54831 Msa1436600:exon 25.0%
! GCTTTCTCAGTATATTAAAT+AGG - tig0027944:54955-54974 Msa1436600:five_prime_UTR 25.0%
! TATACTTTGCTCATGTAAAT+TGG - tig0027944:55054-55073 Msa1436600:five_prime_UTR 25.0%
! TTACTTAAAAGAAATGGTAC+AGG + tig0027944:53403-53422 None:intergenic 25.0%
!!! GAGGCCAAAATTTTATTTTT+AGG - tig0027944:53757-53776 Msa1436600:CDS 25.0%
!! CAGGTAATTTCTTTTATGAA+TGG - tig0027944:54047-54066 Msa1436600:intron 25.0%
! TCTCAACCACATTTAAATTT+AGG - tig0027944:54178-54197 Msa1436600:intron 25.0%
! CTCAACCACATTTAAATTTA+GGG - tig0027944:54179-54198 Msa1436600:intron 25.0%
! TCAACCACATTTAAATTTAG+GGG - tig0027944:54180-54199 Msa1436600:intron 25.0%
! AGTGCTTTCAAAACAAATAT+GGG + tig0027944:54301-54320 None:intergenic 25.0%
! AAGTGCTTTCAAAACAAATA+TGG + tig0027944:54302-54321 None:intergenic 25.0%
! TAGTTTGAGAAAAATGAAAG+TGG - tig0027944:54418-54437 Msa1436600:intron 25.0%
! CAATGCATATGATTATGTTA+AGG + tig0027944:54559-54578 None:intergenic 25.0%
!! ATTGTAGATTTTTATGGTAC+AGG - tig0027944:54634-54653 Msa1436600:intron 25.0%
!! GATGAATTACGTTTTCATTT+GGG - tig0027944:54812-54831 Msa1436600:exon 25.0%
! GCTTTCTCAGTATATTAAAT+AGG - tig0027944:54955-54974 Msa1436600:five_prime_UTR 25.0%
! TATACTTTGCTCATGTAAAT+TGG - tig0027944:55054-55073 Msa1436600:five_prime_UTR 25.0%
ATTCAGAAATTCCAGTTGTA+GGG + tig0027944:53580-53599 None:intergenic 30.0%
!!! GTTTTTGTTTCTGAAGTTTC+CGG - tig0027944:53668-53687 Msa1436600:CDS 30.0%
!!! TTTTTAGGGTTAGATAATGC+TGG - tig0027944:53772-53791 Msa1436600:CDS 30.0%
!!! TTTAAAGCTTTTGATTTGGG+TGG - tig0027944:53984-54003 Msa1436600:intron 30.0%
CAACCACATTTAAATTTAGG+GGG - tig0027944:54181-54200 Msa1436600:intron 30.0%
TTAAATTTAGGGGGTTCATA+AGG - tig0027944:54190-54209 Msa1436600:intron 30.0%
TTAAATGTAACCACATGTGT+TGG - tig0027944:54441-54460 Msa1436600:intron 30.0%
AAGATTTCCAGAATCAAAGA+AGG - tig0027944:54697-54716 Msa1436600:CDS 30.0%
AATGTACCTTTCCTTATCTT+AGG - tig0027944:54755-54774 Msa1436600:CDS 30.0%
TTGTTTCCTAAGATAAGGAA+AGG + tig0027944:54764-54783 None:intergenic 30.0%
! CAATCTTGTTTCCTAAGATA+AGG + tig0027944:54769-54788 None:intergenic 30.0%
! GGATGAATTACGTTTTCATT+TGG - tig0027944:54811-54830 Msa1436600:exon 30.0%
TCAAATTATAACCCTGACAA+AGG + tig0027944:53316-53335 None:intergenic 30.0%
ATTCAGAAATTCCAGTTGTA+GGG + tig0027944:53580-53599 None:intergenic 30.0%
!!! GTTTTTGTTTCTGAAGTTTC+CGG - tig0027944:53668-53687 Msa1436600:CDS 30.0%
!!! TTTTTAGGGTTAGATAATGC+TGG - tig0027944:53772-53791 Msa1436600:CDS 30.0%
!!! TTTAAAGCTTTTGATTTGGG+TGG - tig0027944:53984-54003 Msa1436600:intron 30.0%
CAACCACATTTAAATTTAGG+GGG - tig0027944:54181-54200 Msa1436600:intron 30.0%
TTAAATTTAGGGGGTTCATA+AGG - tig0027944:54190-54209 Msa1436600:intron 30.0%
TTAAATGTAACCACATGTGT+TGG - tig0027944:54441-54460 Msa1436600:intron 30.0%
AAGATTTCCAGAATCAAAGA+AGG - tig0027944:54697-54716 Msa1436600:CDS 30.0%
AATGTACCTTTCCTTATCTT+AGG - tig0027944:54755-54774 Msa1436600:CDS 30.0%
TTGTTTCCTAAGATAAGGAA+AGG + tig0027944:54764-54783 None:intergenic 30.0%
! CAATCTTGTTTCCTAAGATA+AGG + tig0027944:54769-54788 None:intergenic 30.0%
! GGATGAATTACGTTTTCATT+TGG - tig0027944:54811-54830 Msa1436600:exon 30.0%
!!! TTTGTTTTTTGACGTGACTG+TGG - tig0027944:53486-53505 Msa1436600:three_prime_UTR 35.0%
TTCAGAAATTCCAGTTGTAG+GGG + tig0027944:53579-53598 None:intergenic 35.0%
GATTCAGAAATTCCAGTTGT+AGG + tig0027944:53581-53600 None:intergenic 35.0%
! TTCAGCGTATATATAGTGGA+GGG + tig0027944:53605-53624 None:intergenic 35.0%
TGTCTTCAGCGTATATATAG+TGG + tig0027944:53609-53628 None:intergenic 35.0%
ATACGCTGAAGACAAATACT+TGG - tig0027944:53615-53634 Msa1436600:CDS 35.0%
ATACTCAATTCTTCCGAAGT+TGG + tig0027944:53951-53970 None:intergenic 35.0%
ACTTCGGAAGAATTGAGTAT+TGG - tig0027944:53951-53970 Msa1436600:intron 35.0%
CTTCGGAAGAATTGAGTATT+GGG - tig0027944:53952-53971 Msa1436600:intron 35.0%
GAACCCCCTAAATTTAAATG+TGG + tig0027944:54187-54206 None:intergenic 35.0%
!!! GTTTTGAAAGCACTTATGCT+TGG - tig0027944:54307-54326 Msa1436600:intron 35.0%
! GTAGATTTTTATGGTACAGG+TGG - tig0027944:54637-54656 Msa1436600:intron 35.0%
TGTAGTATTGTTCGCAAGAT+GGG - tig0027944:54911-54930 Msa1436600:five_prime_UTR 35.0%
!! TAGTTCTGAAACTTGCATGT+AGG - tig0027944:55115-55134 Msa1436600:five_prime_UTR 35.0%
!!! TTTGTTTTTTGACGTGACTG+TGG - tig0027944:53486-53505 Msa1436600:three_prime_UTR 35.0%
TTCAGAAATTCCAGTTGTAG+GGG + tig0027944:53579-53598 None:intergenic 35.0%
GATTCAGAAATTCCAGTTGT+AGG + tig0027944:53581-53600 None:intergenic 35.0%
! TTCAGCGTATATATAGTGGA+GGG + tig0027944:53605-53624 None:intergenic 35.0%
TGTCTTCAGCGTATATATAG+TGG + tig0027944:53609-53628 None:intergenic 35.0%
ATACGCTGAAGACAAATACT+TGG - tig0027944:53615-53634 Msa1436600:CDS 35.0%
ATACTCAATTCTTCCGAAGT+TGG + tig0027944:53951-53970 None:intergenic 35.0%
ACTTCGGAAGAATTGAGTAT+TGG - tig0027944:53951-53970 Msa1436600:intron 35.0%
CTTCGGAAGAATTGAGTATT+GGG - tig0027944:53952-53971 Msa1436600:intron 35.0%
GAACCCCCTAAATTTAAATG+TGG + tig0027944:54187-54206 None:intergenic 35.0%
!!! GTTTTGAAAGCACTTATGCT+TGG - tig0027944:54307-54326 Msa1436600:intron 35.0%
! GTAGATTTTTATGGTACAGG+TGG - tig0027944:54637-54656 Msa1436600:intron 35.0%
TGTAGTATTGTTCGCAAGAT+GGG - tig0027944:54911-54930 Msa1436600:five_prime_UTR 35.0%
!! TAGTTCTGAAACTTGCATGT+AGG - tig0027944:55115-55134 Msa1436600:five_prime_UTR 35.0%
CTTCAGCGTATATATAGTGG+AGG + tig0027944:53606-53625 None:intergenic 40.0%
TATGGAATTCTTGCTACCCT+TGG - tig0027944:53721-53740 Msa1436600:CDS 40.0%
ACCAACACAACATCCAACTT+CGG - tig0027944:53935-53954 Msa1436600:intron 40.0%
GTACACTGTCAGTGTTCTAT+AGG - tig0027944:54344-54363 Msa1436600:intron 40.0%
! CACATGTGTTGGTATCTTGT+CGG - tig0027944:54452-54471 Msa1436600:intron 40.0%
GGATTGACTAACTTCACTAC+AGG - tig0027944:54833-54852 Msa1436600:five_prime_UTR 40.0%
ACTAACTTCACTACAGGCAA+GGG - tig0027944:54839-54858 Msa1436600:five_prime_UTR 40.0%
GTGTAGTATTGTTCGCAAGA+TGG - tig0027944:54910-54929 Msa1436600:five_prime_UTR 40.0%
ATTGTTCGCAAGATGGGATA+TGG - tig0027944:54917-54936 Msa1436600:five_prime_UTR 40.0%
CTTCAGCGTATATATAGTGG+AGG + tig0027944:53606-53625 None:intergenic 40.0%
TATGGAATTCTTGCTACCCT+TGG - tig0027944:53721-53740 Msa1436600:CDS 40.0%
ACCAACACAACATCCAACTT+CGG - tig0027944:53935-53954 Msa1436600:intron 40.0%
GTACACTGTCAGTGTTCTAT+AGG - tig0027944:54344-54363 Msa1436600:intron 40.0%
! CACATGTGTTGGTATCTTGT+CGG - tig0027944:54452-54471 Msa1436600:intron 40.0%
GGATTGACTAACTTCACTAC+AGG - tig0027944:54833-54852 Msa1436600:five_prime_UTR 40.0%
ACTAACTTCACTACAGGCAA+GGG - tig0027944:54839-54858 Msa1436600:five_prime_UTR 40.0%
GTGTAGTATTGTTCGCAAGA+TGG - tig0027944:54910-54929 Msa1436600:five_prime_UTR 40.0%
ATTGTTCGCAAGATGGGATA+TGG - tig0027944:54917-54936 Msa1436600:five_prime_UTR 40.0%
TTTGACGTGACTGTGGTCTT+TGG - tig0027944:53493-53512 Msa1436600:three_prime_UTR 45.0%
GTTGTAGGGGTTTGATTGGT+TGG + tig0027944:53566-53585 None:intergenic 45.0%
ACCAATCAAACCCCTACAAC+TGG - tig0027944:53566-53585 Msa1436600:CDS 45.0%
TCCAGTTGTAGGGGTTTGAT+TGG + tig0027944:53570-53589 None:intergenic 45.0%
! CTCTTTTTGCCACAGACCAA+GGG + tig0027944:53740-53759 None:intergenic 45.0%
TCCGAAGTTGGATGTTGTGT+TGG + tig0027944:53939-53958 None:intergenic 45.0%
ACCAAATTGCTCGTAGAGTC+TGG - tig0027944:54009-54028 Msa1436600:intron 45.0%
TCCAGACTCTACGAGCAATT+TGG + tig0027944:54013-54032 None:intergenic 45.0%
AAATTGCTCGTAGAGTCTGG+AGG - tig0027944:54012-54031 Msa1436600:intron 45.0%
AATTGCTCGTAGAGTCTGGA+GGG - tig0027944:54013-54032 Msa1436600:intron 45.0%
TAACCCGGACTCACTTTGAT+TGG + tig0027944:54269-54288 None:intergenic 45.0%
AATCAAAGTGAGTCCGGGTT+AGG - tig0027944:54268-54287 Msa1436600:intron 45.0%
! TATGGGTTACTCTCCTAACC+CGG + tig0027944:54284-54303 None:intergenic 45.0%
TGCGTCAGTGATTCATAGCT+CGG + tig0027944:54381-54400 None:intergenic 45.0%
CGACAAGATACCAACACATG+TGG + tig0027944:54454-54473 None:intergenic 45.0%
TTGGTATCTTGTCGGTGTGT+TGG - tig0027944:54460-54479 Msa1436600:intron 45.0%
AGCGTGAACGTAATCATGTG+TGG - tig0027944:54589-54608 Msa1436600:intron 45.0%
GCGTGAACGTAATCATGTGT+GGG - tig0027944:54590-54609 Msa1436600:intron 45.0%
CCTTGTCAAATGCATCAACC+AGG + tig0027944:54676-54695 None:intergenic 45.0%
! CCTGGTTGATGCATTTGACA+AGG - tig0027944:54673-54692 Msa1436600:intron 45.0%
TCCAGAATCAAAGAAGGAGC+TGG - tig0027944:54703-54722 Msa1436600:CDS 45.0%
TCCAGCTCCTTCTTTGATTC+TGG + tig0027944:54707-54726 None:intergenic 45.0%
CTTCTTGCTGATGAGTCACT+AGG - tig0027944:54731-54750 Msa1436600:CDS 45.0%
CATTCCTTATGCTGCATCAG+AGG - tig0027944:54790-54809 Msa1436600:CDS 45.0%
TCATCCTCTGATGCAGCATA+AGG + tig0027944:54797-54816 None:intergenic 45.0%
GACTAACTTCACTACAGGCA+AGG - tig0027944:54838-54857 Msa1436600:five_prime_UTR 45.0%
ACATGAACACCTCCAAAGGA+CGG + tig0027944:54892-54911 None:intergenic 45.0%
CTACACATGAACACCTCCAA+AGG + tig0027944:54896-54915 None:intergenic 45.0%
GATATGGTGAAGGCTTTCAG+TGG - tig0027944:54933-54952 Msa1436600:five_prime_UTR 45.0%
TTTGACGTGACTGTGGTCTT+TGG - tig0027944:53493-53512 Msa1436600:three_prime_UTR 45.0%
GTTGTAGGGGTTTGATTGGT+TGG + tig0027944:53566-53585 None:intergenic 45.0%
ACCAATCAAACCCCTACAAC+TGG - tig0027944:53566-53585 Msa1436600:CDS 45.0%
TCCAGTTGTAGGGGTTTGAT+TGG + tig0027944:53570-53589 None:intergenic 45.0%
! CTCTTTTTGCCACAGACCAA+GGG + tig0027944:53740-53759 None:intergenic 45.0%
TCCGAAGTTGGATGTTGTGT+TGG + tig0027944:53939-53958 None:intergenic 45.0%
ACCAAATTGCTCGTAGAGTC+TGG - tig0027944:54009-54028 Msa1436600:intron 45.0%
TCCAGACTCTACGAGCAATT+TGG + tig0027944:54013-54032 None:intergenic 45.0%
AAATTGCTCGTAGAGTCTGG+AGG - tig0027944:54012-54031 Msa1436600:intron 45.0%
AATTGCTCGTAGAGTCTGGA+GGG - tig0027944:54013-54032 Msa1436600:intron 45.0%
TAACCCGGACTCACTTTGAT+TGG + tig0027944:54269-54288 None:intergenic 45.0%
AATCAAAGTGAGTCCGGGTT+AGG - tig0027944:54268-54287 Msa1436600:intron 45.0%
! TATGGGTTACTCTCCTAACC+CGG + tig0027944:54284-54303 None:intergenic 45.0%
TGCGTCAGTGATTCATAGCT+CGG + tig0027944:54381-54400 None:intergenic 45.0%
CGACAAGATACCAACACATG+TGG + tig0027944:54454-54473 None:intergenic 45.0%
TTGGTATCTTGTCGGTGTGT+TGG - tig0027944:54460-54479 Msa1436600:intron 45.0%
AGCGTGAACGTAATCATGTG+TGG - tig0027944:54589-54608 Msa1436600:intron 45.0%
GCGTGAACGTAATCATGTGT+GGG - tig0027944:54590-54609 Msa1436600:intron 45.0%
CCTTGTCAAATGCATCAACC+AGG + tig0027944:54676-54695 None:intergenic 45.0%
! CCTGGTTGATGCATTTGACA+AGG - tig0027944:54673-54692 Msa1436600:intron 45.0%
TCCAGAATCAAAGAAGGAGC+TGG - tig0027944:54703-54722 Msa1436600:CDS 45.0%
TCCAGCTCCTTCTTTGATTC+TGG + tig0027944:54707-54726 None:intergenic 45.0%
CTTCTTGCTGATGAGTCACT+AGG - tig0027944:54731-54750 Msa1436600:CDS 45.0%
CATTCCTTATGCTGCATCAG+AGG - tig0027944:54790-54809 Msa1436600:CDS 45.0%
TCATCCTCTGATGCAGCATA+AGG + tig0027944:54797-54816 None:intergenic 45.0%
GACTAACTTCACTACAGGCA+AGG - tig0027944:54838-54857 Msa1436600:five_prime_UTR 45.0%
ACATGAACACCTCCAAAGGA+CGG + tig0027944:54892-54911 None:intergenic 45.0%
CTACACATGAACACCTCCAA+AGG + tig0027944:54896-54915 None:intergenic 45.0%
GATATGGTGAAGGCTTTCAG+TGG - tig0027944:54933-54952 Msa1436600:five_prime_UTR 45.0%
! GATTGGTTGGTACGCGTCAT+CGG + tig0027944:53553-53572 None:intergenic 50.0%
TTCTTGCTACCCTTGGTCTG+TGG - tig0027944:53728-53747 Msa1436600:CDS 50.0%
! CCTCTTTTTGCCACAGACCA+AGG + tig0027944:53741-53760 None:intergenic 50.0%
CCTTGGTCTGTGGCAAAAAG+AGG - tig0027944:53738-53757 Msa1436600:CDS 50.0%
GCTTCACATGCTCAAAGACG+AGG - tig0027944:53807-53826 Msa1436600:CDS 50.0%
CTGGAGGGACTATTATGCTC+AGG - tig0027944:54028-54047 Msa1436600:intron 50.0%
CTCGCCAATCAAAGTGAGTC+CGG - tig0027944:54262-54281 Msa1436600:intron 50.0%
TCGCCAATCAAAGTGAGTCC+GGG - tig0027944:54263-54282 Msa1436600:intron 50.0%
TGACTCCAATGTCCGTCCTT+TGG - tig0027944:54877-54896 Msa1436600:five_prime_UTR 50.0%
CGCAAGATGGGATATGGTGA+AGG - tig0027944:54923-54942 Msa1436600:five_prime_UTR 50.0%
! GATTGGTTGGTACGCGTCAT+CGG + tig0027944:53553-53572 None:intergenic 50.0%
TTCTTGCTACCCTTGGTCTG+TGG - tig0027944:53728-53747 Msa1436600:CDS 50.0%
! CCTCTTTTTGCCACAGACCA+AGG + tig0027944:53741-53760 None:intergenic 50.0%
CCTTGGTCTGTGGCAAAAAG+AGG - tig0027944:53738-53757 Msa1436600:CDS 50.0%
GCTTCACATGCTCAAAGACG+AGG - tig0027944:53807-53826 Msa1436600:CDS 50.0%
CTGGAGGGACTATTATGCTC+AGG - tig0027944:54028-54047 Msa1436600:intron 50.0%
CTCGCCAATCAAAGTGAGTC+CGG - tig0027944:54262-54281 Msa1436600:intron 50.0%
TCGCCAATCAAAGTGAGTCC+GGG - tig0027944:54263-54282 Msa1436600:intron 50.0%
TGACTCCAATGTCCGTCCTT+TGG - tig0027944:54877-54896 Msa1436600:five_prime_UTR 50.0%
CGCAAGATGGGATATGGTGA+AGG - tig0027944:54923-54942 Msa1436600:five_prime_UTR 50.0%
GGTGGATGCTGTAGTCTACC+TGG - tig0027944:54655-54674 Msa1436600:intron 55.0%
CTCCAATGTCCGTCCTTTGG+AGG - tig0027944:54880-54899 Msa1436600:five_prime_UTR 55.0%
CACCTCCAAAGGACGGACAT+TGG + tig0027944:54885-54904 None:intergenic 55.0%
GGTGGATGCTGTAGTCTACC+TGG - tig0027944:54655-54674 Msa1436600:intron 55.0%
CTCCAATGTCCGTCCTTTGG+AGG - tig0027944:54880-54899 Msa1436600:five_prime_UTR 55.0%
CACCTCCAAAGGACGGACAT+TGG + tig0027944:54885-54904 None:intergenic 55.0%
! TGGTTGGTACGCGTCATCGG+AGG + tig0027944:53550-53569 None:intergenic 60.0%
! TGGTTGGTACGCGTCATCGG+AGG + tig0027944:53550-53569 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0027944 gene 53314 55200 53314 ID=Msa1436600;Name=Msa1436600
tig0027944 mRNA 53314 55200 53314 ID=Msa1436600-mRNA-1;Parent=Msa1436600;Name=Msa1436600-mRNA-1;_AED=0.17;_eAED=0.17;_QI=386|1|1|1|1|1|3|224|193
tig0027944 exon 53314 53858 53314 ID=Msa1436600-mRNA-1:exon:10301;Parent=Msa1436600-mRNA-1
tig0027944 exon 54465 54596 54465 ID=Msa1436600-mRNA-1:exon:10300;Parent=Msa1436600-mRNA-1
tig0027944 exon 54686 55200 54686 ID=Msa1436600-mRNA-1:exon:10299;Parent=Msa1436600-mRNA-1
tig0027944 five_prime_UTR 54815 55200 54815 ID=Msa1436600-mRNA-1:five_prime_utr;Parent=Msa1436600-mRNA-1
tig0027944 CDS 54686 54814 54686 ID=Msa1436600-mRNA-1:cds;Parent=Msa1436600-mRNA-1
tig0027944 CDS 54465 54596 54465 ID=Msa1436600-mRNA-1:cds;Parent=Msa1436600-mRNA-1
tig0027944 CDS 53538 53858 53538 ID=Msa1436600-mRNA-1:cds;Parent=Msa1436600-mRNA-1
tig0027944 three_prime_UTR 53314 53537 53314 ID=Msa1436600-mRNA-1:three_prime_utr;Parent=Msa1436600-mRNA-1
Gene Sequence

>Msa1436600

ATGTTTCTTTTTGATTGGTTTTATGGAATTCTTGCTACCCTTGGTCTGTGGCAAAAAGAGGCCAAAATTTTATTTTTAGGGTTAGATAATGCTGGCAAAACAACTTTGCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCATCAACCAACACAACATCCAACTTCGGAAGAATTGAGTATTGGGAAGATAAAGTTTAAAGCTTTTGATTTGGGTGGTCACCAAATTGCTCGTAGAGTCTGGAGGGACTATTATGCTCAGGTGGATGCTGTAGTCTACCTGGTTGATGCATTTGACAAGGAAAGATTTCCAGAATCAAAGAAGGAGCTGGATGCTCTTCTTGCTGATGAGTCACTAGGAAATGTACCTTTCCTTATCTTAGGAAACAAGATTGACATTCCTTATGCTGCATCAGAGGATGAATTACGTTTTCATTTGGGATTGACTAACTTCACTACAGGCAAGGGAAAAATTAATCTTTATGACTCCAATGTCCGTCCTTTGGAGGTGTTCATGTGTAGTATTGTTCGCAAGATGGGATATGGTGAAGGCTTTCAGTGGCTTTCTCAGTATATTAAATAG

Protein sequence

>Msa1436600

MFLFDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWRDYYAQVDAVVYLVDAFDKERFPESKKELDALLADESLGNVPFLILGNKIDIPYAASEDELRFHLGLTNFTTGKGKINLYDSNVRPLEVFMCSIVRKMGYGEGFQWLSQYIK*