AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0616550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616550 MtrunA17_Chr8g0376151 95.305 788 31 1 1 788 178 959 0.0 1410
Msa0616550 MtrunA17_Chr5g0434681 48.109 476 198 16 332 783 519 969 1.09e-94 317
Msa0616550 MtrunA17_Chr1g0184441 30.864 405 233 9 390 781 496 866 1.58e-34 141
Msa0616550 MtrunA17_Chr7g0274311 39.768 259 125 6 369 613 484 725 1.06e-31 132
Msa0616550 MtrunA17_Chr3g0093241 48.592 142 71 1 383 524 290 429 2.00e-22 102
Msa0616550 MtrunA17_Chr7g0268041 44.231 104 58 0 429 532 70 173 2.34e-17 85.9
Msa0616550 MtrunA17_Chr4g0003901 50.515 97 48 0 429 525 289 385 4.94e-16 81.6
Msa0616550 MtrunA17_Chr4g0003911 50.000 92 46 0 432 523 280 371 6.19e-16 82.0
Msa0616550 MtrunA17_Chr4g0059771 56.863 102 44 0 423 524 326 427 4.56e-15 79.0
Msa0616550 MtrunA17_Chr4g0049631 38.000 100 62 0 429 528 303 402 2.10e-14 76.6
Msa0616550 MtrunA17_Chr2g0307041 37.864 103 64 0 423 525 13 115 8.01e-14 74.3
Msa0616550 MtrunA17_Chr1g0176391 40.000 100 60 0 429 528 65 164 1.98e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616550 AT1G70750.1 40.916 677 236 29 128 788 221 749 1.06e-103 336
Msa0616550 AT5G16720.1 44.499 409 161 12 381 778 310 663 1.21e-77 264
Msa0616550 AT2G30690.1 57.724 123 50 2 414 536 602 722 3.57e-29 125
Msa0616550 AT2G30690.2 57.724 123 50 2 414 536 602 722 3.57e-29 125
Msa0616550 AT1G08800.2 41.423 239 123 6 393 625 862 1089 2.45e-28 122
Msa0616550 AT1G08800.4 41.423 239 123 6 393 625 862 1089 2.45e-28 122
Msa0616550 AT1G08800.3 41.423 239 123 6 393 625 862 1089 2.45e-28 122
Msa0616550 AT1G08800.1 41.423 239 123 6 393 625 862 1089 2.45e-28 122
Msa0616550 AT1G74830.1 62.136 103 39 0 422 524 298 400 2.23e-26 114
Msa0616550 AT1G18990.1 64.356 101 36 0 422 522 297 397 1.09e-23 106
Msa0616550 AT4G13630.2 47.541 122 59 1 413 529 204 325 1.10e-20 97.4
Msa0616550 AT4G13630.1 47.541 122 59 1 413 529 204 325 1.10e-20 97.4
Msa0616550 AT3G54740.8 37.430 179 95 4 403 569 5 178 4.49e-19 90.9
Msa0616550 AT3G54740.1 37.430 179 95 4 403 569 5 178 4.49e-19 90.9
Msa0616550 AT3G54740.7 37.430 179 95 4 403 569 5 178 4.49e-19 90.9
Msa0616550 AT3G54740.4 37.430 179 95 4 403 569 5 178 4.49e-19 90.9
Msa0616550 AT3G54740.3 37.430 179 95 4 403 569 53 226 5.67e-19 90.9
Msa0616550 AT3G54740.6 37.430 179 95 4 403 569 53 226 5.67e-19 90.9
Msa0616550 AT3G54740.2 37.430 179 95 4 403 569 53 226 5.67e-19 90.9
Msa0616550 AT3G54740.5 37.430 179 95 4 403 569 53 226 5.67e-19 90.9
Msa0616550 AT1G04890.1 49.123 114 56 1 410 523 97 208 5.01e-18 87.8
Msa0616550 AT4G13160.1 54.255 94 43 0 429 522 117 210 2.86e-16 80.5
Msa0616550 AT5G06560.1 37.903 124 70 1 426 542 71 194 3.77e-16 82.8
Msa0616550 AT4G30830.1 41.237 97 57 0 429 525 18 114 4.54e-12 68.9
Msa0616550 AT4G30830.2 41.237 97 57 0 429 525 18 114 4.54e-12 68.9

Find 176 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCATTCTATGAACATTT+TGG 0.131796 4_2:-66458234 Msa0616550:exon
ATAAAGTTTGCTGATTATTT+TGG 0.145806 4_2:-66458628 Msa0616550:five_prime_UTR
GGTGGTGGAGGAAGGGTTTA+AGG 0.150734 4_2:-66457706 Msa0616550:CDS
ATTGAGAATTGGCACATTTC+TGG 0.155393 4_2:-66457624 Msa0616550:CDS
TGAGAAAGTTTGACATAATT+TGG 0.160478 4_2:+66458409 None:intergenic
TTTATTAGAGAGACAGAATT+AGG 0.167811 4_2:-66454719 Msa0616550:three_prime_UTR
CATGATTACCTTTATGAAAA+AGG 0.209302 4_2:-66454886 Msa0616550:three_prime_UTR
GATTTCCAAGGTCATGTAAA+TGG 0.210463 4_2:-66455913 Msa0616550:CDS
ATGTGCCAATTCTCAATTAA+TGG 0.212111 4_2:+66457630 None:intergenic
CTTCAACATTATCATGCTTA+TGG 0.213927 4_2:+66457484 None:intergenic
TGCTGTTGAGATTTCCAAAT+TGG 0.222106 4_2:-66458509 Msa0616550:five_prime_UTR
GAATCCACTGCCACAGAAAA+TGG 0.228593 4_2:-66457750 Msa0616550:CDS
ATTGGAACAGAAAACCAATT+TGG 0.241967 4_2:+66458495 None:intergenic
TAACCATATGCCTTCATCTT+TGG 0.254980 4_2:-66456778 Msa0616550:CDS
TGTAGATGCTGTGTTATATT+TGG 0.255018 4_2:-66456124 Msa0616550:CDS
TTCAGCTGAAAAGACCAATT+TGG 0.270275 4_2:-66455734 Msa0616550:CDS
GATCTTTACAAGCTTGAATT+TGG 0.276454 4_2:-66457960 Msa0616550:CDS
AAGATGTCAAAACTGTATTT+TGG 0.282209 4_2:+66458861 None:intergenic
AGGATTCTCCCTTCTCCATT+AGG 0.301247 4_2:+66455028 None:intergenic
GACCAATTTGGATAACAAAA+AGG 0.301928 4_2:-66455722 Msa0616550:CDS
TTTGAGGTTGAACATGATTC+AGG 0.302213 4_2:-66458056 Msa0616550:CDS
TCATTGGATGGAAGTGTAAT+AGG 0.334923 4_2:-66456639 Msa0616550:CDS
AATCATTGCCATTGTTTGAT+TGG 0.338660 4_2:+66456494 None:intergenic
AAACAATGGCAATGATTAAC+AGG 0.343697 4_2:-66456488 Msa0616550:CDS
GGATTCTCCCTTCTCCATTA+GGG 0.354187 4_2:+66455029 None:intergenic
TTATGAGAGACTACAAGTTT+TGG 0.357126 4_2:-66455671 Msa0616550:CDS
CAAGAATCAAAAGAAGAAAA+TGG 0.358623 4_2:-66456171 Msa0616550:CDS
TTCAGCTAGTTTGTGATGAT+TGG 0.359303 4_2:+66458477 None:intergenic
TCTCTCCAGCTTTGCAAGCC+AGG 0.366648 4_2:+66454783 None:intergenic
TGATCATCATCCTGAGCCTT+TGG 0.368054 4_2:+66457885 None:intergenic
TAAGACCTGGCTTGCAAAGC+TGG 0.370214 4_2:-66454788 Msa0616550:three_prime_UTR
TCATTGAGAAAAGGGGATAA+AGG 0.370415 4_2:-66455613 Msa0616550:CDS
CCAATTCTCAATTAATGGTT+CGG 0.375649 4_2:+66457635 None:intergenic
CAGTTTGATTCCTGTTGAAT+TGG 0.375927 4_2:-66457775 Msa0616550:CDS
CCGAACCATTAATTGAGAAT+TGG 0.389801 4_2:-66457635 Msa0616550:CDS
CTTGAATTTGGTGTAAAGAA+AGG 0.400903 4_2:-66457948 Msa0616550:CDS
TCATCCATTTGTTCATGATC+AGG 0.416480 4_2:+66457220 None:intergenic
AAAGAGAATTTAGAAGAAGA+AGG 0.420703 4_2:+66458665 None:intergenic
TATGAAGCAGAAGTATCAAT+TGG 0.425288 4_2:-66457253 Msa0616550:CDS
CAGCATCTACAGGAGTGTTC+TGG 0.425690 4_2:+66456136 None:intergenic
TCCGGAGAAGTCGGTGTGTC+GGG 0.425794 4_2:+66456726 None:intergenic
TCAAGGCCAGGATATTCTTT+CGG 0.427039 4_2:-66457194 Msa0616550:CDS
TGATGGTGTCAAGGAAACTA+TGG 0.430020 4_2:-66457988 Msa0616550:CDS
AGACAATGGGAGATCCCTAA+TGG 0.430134 4_2:-66455043 Msa0616550:three_prime_UTR
AAATTCTATGCACCTGGCAC+TGG 0.431551 4_2:+66454744 None:intergenic
TTATTAGAGAGACAGAATTA+GGG 0.432654 4_2:-66454718 Msa0616550:three_prime_UTR
CATTGAGAAAAGGGGATAAA+GGG 0.434221 4_2:-66455612 Msa0616550:CDS
TACAACATCTACGTGATTTG+AGG 0.434349 4_2:-66455567 Msa0616550:CDS
CAAATCCATTTACATGACCT+TGG 0.434429 4_2:+66455908 None:intergenic
TTGAATTTGGTGTAAAGAAA+GGG 0.435192 4_2:-66457947 Msa0616550:CDS
TGCAAACTTGTTGGCAGCCA+TGG 0.435469 4_2:+66458762 None:intergenic
AACATCTTCGTGAAGAGAAC+GGG 0.438917 4_2:-66455972 Msa0616550:CDS
GTATCAGCTCATTGAGAAAA+GGG 0.444188 4_2:-66455621 Msa0616550:CDS
TGTGATAAGGTGGTGGAGGA+AGG 0.445212 4_2:-66457714 Msa0616550:CDS
CTAGGTTCATATGTTTCTCT+AGG 0.445875 4_2:-66457420 Msa0616550:intron
GTCAGGAACAGAAGATTCAT+TGG 0.455379 4_2:-66456655 Msa0616550:CDS
GGTTGGTTTAGAAGAGGAGG+TGG 0.457431 4_2:-66455701 Msa0616550:CDS
GTGGATTCAACCAATTCAAC+AGG 0.460558 4_2:+66457765 None:intergenic
CATGTAAATGGATTTGCAAA+TGG 0.462247 4_2:-66455901 Msa0616550:CDS
ACTCAACTCTACATCTTCTT+CGG 0.465186 4_2:+66455798 None:intergenic
TAGTCTATGCAATCTTAGAA+TGG 0.466575 4_2:-66458699 Msa0616550:five_prime_UTR
GTGCAAACTTCTCGTGTGCT+TGG 0.472055 4_2:+66455134 None:intergenic
TTGTATTATTGCATCCTATG+AGG 0.473752 4_2:-66454615 Msa0616550:three_prime_UTR
AGGCTTACCACTATCATGTT+GGG 0.473913 4_2:+66457117 None:intergenic
AATGGATTTGCAAATGGTAA+TGG 0.475509 4_2:-66455895 Msa0616550:CDS
TGTATCAGCTCATTGAGAAA+AGG 0.475886 4_2:-66455622 Msa0616550:CDS
CATAGCCTCTTGATCGTACT+CGG 0.476563 4_2:+66456398 None:intergenic
ATATCTATTTCCTTCATCCA+TGG 0.485123 4_2:+66458370 None:intergenic
GCTCCAAAGATGAAGGCATA+TGG 0.485262 4_2:+66456775 None:intergenic
TCTCAAAGTTTCCTCTTCCA+AGG 0.486049 4_2:+66457917 None:intergenic
ATTAATAGTGCTGATGGAAA+GGG 0.486349 4_2:-66458346 Msa0616550:five_prime_UTR
AATTCCTGATCATGAACAAA+TGG 0.488142 4_2:-66457224 Msa0616550:CDS
ACTAGAACAGCTGAAAGTAT+TGG 0.499006 4_2:-66456061 Msa0616550:CDS
GATATGATTAATAGTGCTGA+TGG 0.500382 4_2:-66458352 Msa0616550:five_prime_UTR
GAATGATCTTATATTGAAGA+GGG 0.501695 4_2:-66456367 Msa0616550:CDS
CATTCTTAATTCAAGTGACA+TGG 0.503402 4_2:+66456812 None:intergenic
TGTGCTTGTTCTGTTTGTGA+TGG 0.503760 4_2:-66458005 Msa0616550:CDS
TGAGGTAAGAGTGAAGTTTG+AGG 0.504722 4_2:-66454660 Msa0616550:three_prime_UTR
TGGAATTCATATGTTGTTTG+AGG 0.507732 4_2:-66458072 Msa0616550:CDS
GGGAATTAGAAAGTTGAAGA+GGG 0.508057 4_2:-66458326 Msa0616550:five_prime_UTR
GATTAATAGTGCTGATGGAA+AGG 0.508999 4_2:-66458347 Msa0616550:five_prime_UTR
AACATGGAAAGAATGATGAA+TGG 0.512778 4_2:-66457459 Msa0616550:CDS
TGATTCAACCTCATTGACCT+TGG 0.513718 4_2:+66457557 None:intergenic
TAATACAAAAGATGAGAAAG+AGG 0.515140 4_2:+66454630 None:intergenic
GAACAAATGGATGAGTATCA+AGG 0.515576 4_2:-66457211 Msa0616550:CDS
AAATCAAAATAGATGTGATA+AGG 0.515683 4_2:-66457727 Msa0616550:CDS
TTTAATGCCCAACATGATAG+TGG 0.517123 4_2:-66457124 Msa0616550:intron
ATTCATCTACTAGCTCAGTC+AGG 0.517217 4_2:-66457147 Msa0616550:CDS
TTTCTCGAGAGGAAAGGGTC+AGG 0.520344 4_2:-66456672 Msa0616550:CDS
GGCATATGGTTACTTGCTGT+TGG 0.523409 4_2:+66456789 None:intergenic
GAGGCTTACCACTATCATGT+TGG 0.523454 4_2:+66457116 None:intergenic
AAATATAACACAGCATCTAC+AGG 0.525131 4_2:+66456126 None:intergenic
TTTGAGATTGAATGTTCCAA+AGG 0.527554 4_2:-66457901 Msa0616550:CDS
TAGATGTGATAAGGTGGTGG+AGG 0.527709 4_2:-66457718 Msa0616550:CDS
ATTGAATGTTCCAAAGGCTC+AGG 0.527773 4_2:-66457895 Msa0616550:CDS
AGGGAATGAAACCTTGGAAG+AGG 0.530134 4_2:-66457928 Msa0616550:CDS
TCCCGACACACCGACTTCTC+CGG 0.530703 4_2:-66456727 Msa0616550:CDS
TGTAGTTGATGAAGACTCTC+CGG 0.531114 4_2:+66456708 None:intergenic
CTTCGTGAAGAGAACGGGAA+TGG 0.531529 4_2:-66455967 Msa0616550:CDS
GGAATGTGGAACTCAGAGTC+AGG 0.532375 4_2:-66455546 Msa0616550:CDS
TCATCAAGAAAGGAAAGTCT+TGG 0.532515 4_2:-66455866 Msa0616550:CDS
AATTCTTGCACACCACATGC+AGG 0.534692 4_2:+66458594 None:intergenic
CTCCGGAGAAGTCGGTGTGT+CGG 0.535211 4_2:+66456725 None:intergenic
CGCATTGAAATCTGAAAGGA+AGG 0.536176 4_2:-66456574 Msa0616550:CDS
TTCTGTTTGTGATGGTGTCA+AGG 0.536392 4_2:-66457997 Msa0616550:CDS
ATGGAAAGCATCATCAAGAA+AGG 0.538978 4_2:-66455876 Msa0616550:CDS
TAACATGGTTGCAAACTTGT+TGG 0.542372 4_2:+66458753 None:intergenic
GATGAGCATATGTGTGTGTA+GGG 0.544532 4_2:-66454858 Msa0616550:three_prime_UTR
TGGGAGATCCCTAATGGAGA+AGG 0.545330 4_2:-66455037 Msa0616550:three_prime_UTR
TCCTCAGCGTTGCTACAAGA+AGG 0.546661 4_2:+66456222 None:intergenic
GTGATAAGGTGGTGGAGGAA+GGG 0.547154 4_2:-66457713 Msa0616550:CDS
GTTGGTGTTTCTGTGTAACA+TGG 0.547580 4_2:+66458738 None:intergenic
TCAAAATAGATGTGATAAGG+TGG 0.548904 4_2:-66457724 Msa0616550:CDS
GGAACAGAAGATTCATTGGA+TGG 0.549334 4_2:-66456651 Msa0616550:CDS
AATGGATGAGTATCAAGGCC+AGG 0.550806 4_2:-66457206 Msa0616550:CDS
ATGTGGTGACGTGACCTTCG+AGG 0.551592 4_2:-66456607 Msa0616550:CDS
TGAATGATCTTATATTGAAG+AGG 0.551934 4_2:-66456368 Msa0616550:CDS
AGAGAAAGCAGCAATGCAGA+TGG 0.554976 4_2:-66456457 Msa0616550:CDS
AGGGAATTAGAAAGTTGAAG+AGG 0.555639 4_2:-66458327 Msa0616550:five_prime_UTR
GAACATCTTCGTGAAGAGAA+CGG 0.557301 4_2:-66455973 Msa0616550:CDS
TCATTAAGCTCCAAAGATGA+AGG 0.560251 4_2:+66456768 None:intergenic
GAACTCAGAGTCAGGAACAT+AGG 0.561039 4_2:-66455538 Msa0616550:CDS
AAATAGATGTGATAAGGTGG+TGG 0.561586 4_2:-66457721 Msa0616550:CDS
ATATTGAATTATGAAGATGA+AGG 0.565833 4_2:-66456024 Msa0616550:CDS
ATAAAATACAAGTGACAGCA+TGG 0.571800 4_2:+66454819 None:intergenic
AAAGAAAGGGAATGAAACCT+TGG 0.573374 4_2:-66457934 Msa0616550:CDS
AAAGGTTGGTTTAGAAGAGG+AGG 0.574199 4_2:-66455704 Msa0616550:CDS
ATCAAACAGATCATGCTACA+AGG 0.576586 4_2:+66455008 None:intergenic
AAGCAGAACATGATCAAAGA+AGG 0.576841 4_2:-66458191 Msa0616550:CDS
AACTCTACCAAAGATATGAC+AGG 0.577897 4_2:-66455484 Msa0616550:intron
TGTGCTTGGTTTGCAGCATG+TGG 0.578287 4_2:+66455148 None:intergenic
GAATGATCAATAACAATGCA+AGG 0.581504 4_2:+66458248 None:intergenic
AGATGCTGTGTTATATTTGG+AGG 0.584225 4_2:-66456121 Msa0616550:CDS
TTGTATCCGAAAGAATATCC+TGG 0.587704 4_2:+66457188 None:intergenic
GCACATTTCTGGTGATATTG+TGG 0.590921 4_2:-66457613 Msa0616550:CDS
TAAACAAAATTCTATGCACC+TGG 0.591855 4_2:+66454738 None:intergenic
GATCAATAACAATGCAAGGA+GGG 0.594685 4_2:+66458252 None:intergenic
TGATGAGCATATGTGTGTGT+AGG 0.596077 4_2:-66454859 Msa0616550:three_prime_UTR
GAAGAAGATGTAGAGTTGAG+TGG 0.596653 4_2:-66455796 Msa0616550:CDS
TGAAGACTCTCCGGAGAAGT+CGG 0.598220 4_2:+66456717 None:intergenic
GGTTTGAGATGTTCTTGCTG+TGG 0.598600 4_2:-66458305 Msa0616550:five_prime_UTR
TGATAATGTTGAAGTAAACA+TGG 0.598835 4_2:-66457475 Msa0616550:CDS
AAACAGAGCATCTTCAACCA+TGG 0.601767 4_2:-66458779 Msa0616550:five_prime_UTR
GACGATCATGATGATTTCCA+AGG 0.606183 4_2:-66455925 Msa0616550:CDS
GGGAGATCCCTAATGGAGAA+GGG 0.609817 4_2:-66455036 Msa0616550:three_prime_UTR
TCTACGTGATTTGAGGAATG+TGG 0.613878 4_2:-66455560 Msa0616550:CDS
AGCAACGCTGAGGATAGTGA+TGG 0.616923 4_2:-66456213 Msa0616550:CDS
ACAATCCGAGTACGATCAAG+AGG 0.619408 4_2:-66456403 Msa0616550:CDS
AATCCGCATTGAAATCTGAA+AGG 0.619756 4_2:-66456578 Msa0616550:CDS
TTTGCAGTATCAGAGAATGA+TGG 0.624136 4_2:-66456430 Msa0616550:CDS
GGAGCTTAATGAGAATGCAG+AGG 0.627296 4_2:-66456757 Msa0616550:CDS
AAATGTGTCCAAGGTCAATG+AGG 0.633487 4_2:-66457565 Msa0616550:CDS
GATGATGCATCACAAACTCA+AGG 0.634789 4_2:-66457286 Msa0616550:CDS
ATTCTTGCACACCACATGCA+GGG 0.636899 4_2:+66458595 None:intergenic
ATCACAAACTCAAGGTGAGG+AGG 0.642622 4_2:-66457278 Msa0616550:CDS
CAGGAACATAGGAGATCTTG+CGG 0.643584 4_2:-66455527 Msa0616550:CDS
TATCAGCTCATTGAGAAAAG+GGG 0.648271 4_2:-66455620 Msa0616550:CDS
TCCTTCTTGTAGCAACGCTG+AGG 0.650250 4_2:-66456223 Msa0616550:CDS
GATTGCATAGACTAGAACAA+GGG 0.653173 4_2:+66458708 None:intergenic
TGCATCACAAACTCAAGGTG+AGG 0.653414 4_2:-66457281 Msa0616550:CDS
TCACACACAAGATCTCTACA+AGG 0.661299 4_2:+66458538 None:intergenic
AGATTGCATAGACTAGAACA+AGG 0.662380 4_2:+66458707 None:intergenic
GTAATAGGCGACATAGAATG+TGG 0.664054 4_2:-66456624 Msa0616550:CDS
CAAAACATTGAAGAAAACAG+TGG 0.667489 4_2:-66458092 Msa0616550:CDS
ATCTGTTTGATACAATGTGG+TGG 0.667568 4_2:-66454996 Msa0616550:three_prime_UTR
TTTATGAGGAAATTAAGACC+TGG 0.671431 4_2:-66454801 Msa0616550:three_prime_UTR
GCCTGAAAAGACCCTGCATG+TGG 0.674969 4_2:-66458606 Msa0616550:five_prime_UTR
TGATCAATAACAATGCAAGG+AGG 0.675124 4_2:+66458251 None:intergenic
TCTTGGCTACTAAAGCAAAG+AGG 0.677057 4_2:-66455849 Msa0616550:CDS
TGTAGCAGCCAATCAAACAA+TGG 0.682068 4_2:-66456502 Msa0616550:CDS
TGTTGAAGTTGAGAAAACTG+AGG 0.695566 4_2:-66457844 Msa0616550:CDS
ATATATGTATAGCACTGCAT+TGG 0.703501 4_2:+66455112 None:intergenic
CTTCCTTTCAGATTTCAATG+CGG 0.713730 4_2:+66456575 None:intergenic
GCAACGCTGAGGATAGTGAT+GGG 0.723560 4_2:-66456212 Msa0616550:CDS
TGAATCAGATGATATGTGTG+AGG 0.729118 4_2:-66458458 Msa0616550:five_prime_UTR
ATGATCTGTTTGATACAATG+TGG 0.760641 4_2:-66454999 Msa0616550:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAAAAAAAATATCAAA+AGG + chr4_2:66458469-66458488 None:intergenic 10.0%
!!! TTTTTTACATTATTTTTTTG+AGG - chr4_2:66458742-66458761 Msa0616550:five_prime_UTR 10.0%
!! ACAATAATATATAAAATGAG+TGG + chr4_2:66456053-66456072 None:intergenic 15.0%
!!! TTTTATCTTATTTGTCAATT+GGG - chr4_2:66458205-66458224 Msa0616550:CDS 15.0%
!!! GTCTTTTTTTTTCTTAAAAT+TGG + chr4_2:66458361-66458380 None:intergenic 15.0%
!! TTTAAGAAAAAAAAAGACAA+TGG - chr4_2:66458363-66458382 Msa0616550:five_prime_UTR 15.0%
!! TTAAGAAAAAAAAAGACAAT+GGG - chr4_2:66458364-66458383 Msa0616550:five_prime_UTR 15.0%
!! GTACAAAAGAAAAAAGAAAA+AGG + chr4_2:66454603-66454622 None:intergenic 20.0%
!!! ATAAAGTTTGCTGATTATTT+TGG - chr4_2:66454792-66454811 Msa0616550:three_prime_UTR 20.0%
!! ATGAAAAATTCAAGATGTTT+AGG + chr4_2:66455610-66455629 None:intergenic 20.0%
!! AAATCAAAATAGATGTGATA+AGG - chr4_2:66455693-66455712 Msa0616550:CDS 20.0%
!!! TAATTAGAAAGTTCTAAACA+TGG + chr4_2:66456491-66456510 None:intergenic 20.0%
!! AAAATTTGCAATGTGTAATT+AGG - chr4_2:66456547-66456566 Msa0616550:CDS 20.0%
!! ATATTGAATTATGAAGATGA+AGG - chr4_2:66457396-66457415 Msa0616550:intron 20.0%
!! TCTAGTACATATAAAAAAGT+TGG + chr4_2:66457972-66457991 None:intergenic 20.0%
!!! AGTTTTTTTTCTTCGAAAAA+TGG + chr4_2:66458117-66458136 None:intergenic 20.0%
!!! CTTTTATCTTATTTGTCAAT+TGG - chr4_2:66458204-66458223 Msa0616550:CDS 20.0%
!! AAAAAAAATGACAAAACTAG+TGG + chr4_2:66458728-66458747 None:intergenic 20.0%
!! AAGATGTCAAAACTGTATTT+TGG + chr4_2:66454562-66454581 None:intergenic 25.0%
! AAAGAGAATTTAGAAGAAGA+AGG + chr4_2:66454758-66454777 None:intergenic 25.0%
! TGAGAAAGTTTGACATAATT+TGG + chr4_2:66455014-66455033 None:intergenic 25.0%
!! AAAGTTTAGATGTTTTTCCA+TGG - chr4_2:66455033-66455052 Msa0616550:three_prime_UTR 25.0%
!! TGATCATTCTATGAACATTT+TGG - chr4_2:66455186-66455205 Msa0616550:intron 25.0%
!!! TTGAATTTGGTGTAAAGAAA+GGG - chr4_2:66455473-66455492 Msa0616550:intron 25.0%
! AAAAATTCAAGATGTTTAGG+TGG + chr4_2:66455607-66455626 None:intergenic 25.0%
!! CATCTTGAATTTTTCATTCA+TGG - chr4_2:66455613-66455632 Msa0616550:CDS 25.0%
!!! ATTTTGATTTCCATTTTCTG+TGG + chr4_2:66455683-66455702 None:intergenic 25.0%
!! GAAGATTTTATTCTGGATTT+TGG - chr4_2:66455742-66455761 Msa0616550:CDS 25.0%
!!! AATTGAATTTTCAAGATGTG+AGG - chr4_2:66455890-66455909 Msa0616550:CDS 25.0%
!! TGATAATGTTGAAGTAAACA+TGG - chr4_2:66455945-66455964 Msa0616550:CDS 25.0%
!!! ATGATGAATGGATATTTTGA+TGG - chr4_2:66455973-66455992 Msa0616550:CDS 25.0%
! AAAAGGAAGACAATAAATTG+AGG + chr4_2:66456326-66456345 None:intergenic 25.0%
! TACATTTGCCAACATTATAA+AGG + chr4_2:66456402-66456421 None:intergenic 25.0%
!!! TGCCTCTAAAACATTTTTAT+TGG - chr4_2:66456450-66456469 Msa0616550:CDS 25.0%
!!! GCCTCTAAAACATTTTTATT+GGG - chr4_2:66456451-66456470 Msa0616550:CDS 25.0%
!!! CCTCTAAAACATTTTTATTG+GGG - chr4_2:66456452-66456471 Msa0616550:CDS 25.0%
! TGAATGATCTTATATTGAAG+AGG - chr4_2:66457052-66457071 Msa0616550:intron 25.0%
! GAATGATCTTATATTGAAGA+GGG - chr4_2:66457053-66457072 Msa0616550:intron 25.0%
! GCTTGAAGTATATAGAAAAA+AGG - chr4_2:66457104-66457123 Msa0616550:intron 25.0%
! CAAGAATCAAAAGAAGAAAA+TGG - chr4_2:66457249-66457268 Msa0616550:CDS 25.0%
!!! AACCTTTTTGTTATCCAAAT+TGG + chr4_2:66457703-66457722 None:intergenic 25.0%
! AATTTGGATAACAAAAAGGT+TGG - chr4_2:66457702-66457721 Msa0616550:CDS 25.0%
!!! TTTTTTACCTGTCATATCTT+TGG + chr4_2:66457946-66457965 None:intergenic 25.0%
! CAAGTGTTTACAATTTACAT+TGG + chr4_2:66458039-66458058 None:intergenic 25.0%
!! TTTTTCTTCGAAAAATGGAT+AGG + chr4_2:66458112-66458131 None:intergenic 25.0%
! AAGAAAAAAAACTTATCCGA+GGG - chr4_2:66458124-66458143 Msa0616550:CDS 25.0%
! AAATAAGATAAAAGCCTGTT+AGG + chr4_2:66458198-66458217 None:intergenic 25.0%
! CATGATTACCTTTATGAAAA+AGG - chr4_2:66458534-66458553 Msa0616550:five_prime_UTR 25.0%
! TTTATTAGAGAGACAGAATT+AGG - chr4_2:66458701-66458720 Msa0616550:five_prime_UTR 25.0%
! TTATTAGAGAGACAGAATTA+GGG - chr4_2:66458702-66458721 Msa0616550:five_prime_UTR 25.0%
! TAATACAAAAGATGAGAAAG+AGG + chr4_2:66458793-66458812 None:intergenic 25.0%
TGTACATAGCAAAAAAACAG+AGG - chr4_2:66454618-66454637 Msa0616550:three_prime_UTR 30.0%
TAGTCTATGCAATCTTAGAA+TGG - chr4_2:66454721-66454740 Msa0616550:three_prime_UTR 30.0%
ATTGGAACAGAAAACCAATT+TGG + chr4_2:66454928-66454947 None:intergenic 30.0%
ATATCTATTTCCTTCATCCA+TGG + chr4_2:66455053-66455072 None:intergenic 30.0%
! GATATGATTAATAGTGCTGA+TGG - chr4_2:66455068-66455087 Msa0616550:three_prime_UTR 30.0%
!! ATTAATAGTGCTGATGGAAA+GGG - chr4_2:66455074-66455093 Msa0616550:three_prime_UTR 30.0%
GAATGATCAATAACAATGCA+AGG + chr4_2:66455175-66455194 None:intergenic 30.0%
CAAAACATTGAAGAAAACAG+TGG - chr4_2:66455328-66455347 Msa0616550:intron 30.0%
! TGGAATTCATATGTTGTTTG+AGG - chr4_2:66455348-66455367 Msa0616550:intron 30.0%
TGATTCAGGTACAAAAAAAG+TGG - chr4_2:66455378-66455397 Msa0616550:intron 30.0%
GATCTTTACAAGCTTGAATT+TGG - chr4_2:66455460-66455479 Msa0616550:intron 30.0%
!! CTTGAATTTGGTGTAAAGAA+AGG - chr4_2:66455472-66455491 Msa0616550:intron 30.0%
! TTTGAGATTGAATGTTCCAA+AGG - chr4_2:66455519-66455538 Msa0616550:exon 30.0%
TCAAAATAGATGTGATAAGG+TGG - chr4_2:66455696-66455715 Msa0616550:CDS 30.0%
CCAATTCTCAATTAATGGTT+CGG + chr4_2:66455788-66455807 None:intergenic 30.0%
ATGTGCCAATTCTCAATTAA+TGG + chr4_2:66455793-66455812 None:intergenic 30.0%
AGAGAATAAAAATGTGTCCA+AGG - chr4_2:66455846-66455865 Msa0616550:CDS 30.0%
CTTCAACATTATCATGCTTA+TGG + chr4_2:66455939-66455958 None:intergenic 30.0%
AACATGGAAAGAATGATGAA+TGG - chr4_2:66455961-66455980 Msa0616550:CDS 30.0%
!! TATGAAGCAGAAGTATCAAT+TGG - chr4_2:66456167-66456186 Msa0616550:CDS 30.0%
AATTCCTGATCATGAACAAA+TGG - chr4_2:66456196-66456215 Msa0616550:CDS 30.0%
! TAAAATCATGGTTCTATGCA+TGG + chr4_2:66456358-66456377 None:intergenic 30.0%
! AGAACCATGATTTTAAATCG+AGG - chr4_2:66456363-66456382 Msa0616550:CDS 30.0%
!! CCCCAATAAAAATGTTTTAG+AGG + chr4_2:66456455-66456474 None:intergenic 30.0%
CATTCTTAATTCAAGTGACA+TGG + chr4_2:66456611-66456630 None:intergenic 30.0%
AATCATTGCCATTGTTTGAT+TGG + chr4_2:66456929-66456948 None:intergenic 30.0%
AAACAATGGCAATGATTAAC+AGG - chr4_2:66456932-66456951 Msa0616550:intron 30.0%
AAAAAAGGTTCATGAGTATG+AGG - chr4_2:66457119-66457138 Msa0616550:intron 30.0%
AAATATAACACAGCATCTAC+AGG + chr4_2:66457297-66457316 None:intergenic 30.0%
TGTAGATGCTGTGTTATATT+TGG - chr4_2:66457296-66457315 Msa0616550:intron 30.0%
! GGAATCATTGTCAAATTTTG+AGG - chr4_2:66457320-66457339 Msa0616550:intron 30.0%
! CATGTAAATGGATTTGCAAA+TGG - chr4_2:66457519-66457538 Msa0616550:CDS 30.0%
! AATGGATTTGCAAATGGTAA+TGG - chr4_2:66457525-66457544 Msa0616550:CDS 30.0%
GACCAATTTGGATAACAAAA+AGG - chr4_2:66457698-66457717 Msa0616550:CDS 30.0%
! TTATGAGAGACTACAAGTTT+TGG - chr4_2:66457749-66457768 Msa0616550:CDS 30.0%
GAAGAAAAAAAACTTATCCG+AGG - chr4_2:66458123-66458142 Msa0616550:CDS 30.0%
GTTAGGTTATTTATCCTAAC+AGG - chr4_2:66458181-66458200 Msa0616550:CDS 30.0%
ATTGGGATATGAATTCATTG+AGG - chr4_2:66458222-66458241 Msa0616550:CDS 30.0%
ATCAACTACAATCTGCATTT+AGG + chr4_2:66458252-66458271 None:intergenic 30.0%
ATATATGTATAGCACTGCAT+TGG + chr4_2:66458311-66458330 None:intergenic 30.0%
ATGATCTGTTTGATACAATG+TGG - chr4_2:66458421-66458440 Msa0616550:five_prime_UTR 30.0%
! TTTCATTTTCTTTGTCCAAG+TGG - chr4_2:66458484-66458503 Msa0616550:five_prime_UTR 30.0%
! TTCATTTTCTTTGTCCAAGT+GGG - chr4_2:66458485-66458504 Msa0616550:five_prime_UTR 30.0%
AACACAACCCACAAAAATTT+GGG + chr4_2:66458511-66458530 None:intergenic 30.0%
GATTACCTTTATGAAAAAGG+AGG - chr4_2:66458537-66458556 Msa0616550:five_prime_UTR 30.0%
!! ATCATCCTCCTTTTTCATAA+AGG + chr4_2:66458545-66458564 None:intergenic 30.0%
ATAAAATACAAGTGACAGCA+TGG + chr4_2:66458604-66458623 None:intergenic 30.0%
TTTATGAGGAAATTAAGACC+TGG - chr4_2:66458619-66458638 Msa0616550:five_prime_UTR 30.0%
TAAACAAAATTCTATGCACC+TGG + chr4_2:66458685-66458704 None:intergenic 30.0%
TTGTATTATTGCATCCTATG+AGG - chr4_2:66458805-66458824 Msa0616550:five_prime_UTR 30.0%
CAAGAAAGAAAAAACCTCAT+AGG + chr4_2:66458822-66458841 None:intergenic 30.0%
TAACATGGTTGCAAACTTGT+TGG + chr4_2:66454670-66454689 None:intergenic 35.0%
! TAGAACAAGGGTGATTTTGT+TGG + chr4_2:66454703-66454722 None:intergenic 35.0%
GATTGCATAGACTAGAACAA+GGG + chr4_2:66454715-66454734 None:intergenic 35.0%
AGATTGCATAGACTAGAACA+AGG + chr4_2:66454716-66454735 None:intergenic 35.0%
TGCTGTTGAGATTTCCAAAT+TGG - chr4_2:66454911-66454930 Msa0616550:three_prime_UTR 35.0%
! TTCAGCTAGTTTGTGATGAT+TGG + chr4_2:66454946-66454965 None:intergenic 35.0%
TGAATCAGATGATATGTGTG+AGG - chr4_2:66454962-66454981 Msa0616550:three_prime_UTR 35.0%
! AGATGTTTTTCCATGGATGA+AGG - chr4_2:66455040-66455059 Msa0616550:three_prime_UTR 35.0%
!! GATTAATAGTGCTGATGGAA+AGG - chr4_2:66455073-66455092 Msa0616550:three_prime_UTR 35.0%
AGGGAATTAGAAAGTTGAAG+AGG - chr4_2:66455093-66455112 Msa0616550:three_prime_UTR 35.0%
GGGAATTAGAAAGTTGAAGA+GGG - chr4_2:66455094-66455113 Msa0616550:three_prime_UTR 35.0%
GATCAATAACAATGCAAGGA+GGG + chr4_2:66455171-66455190 None:intergenic 35.0%
TGATCAATAACAATGCAAGG+AGG + chr4_2:66455172-66455191 None:intergenic 35.0%
AAGCAGAACATGATCAAAGA+AGG - chr4_2:66455229-66455248 Msa0616550:intron 35.0%
! TTTGAGGTTGAACATGATTC+AGG - chr4_2:66455364-66455383 Msa0616550:intron 35.0%
TTCAGGTACAAAAAAAGTGG+AGG - chr4_2:66455381-66455400 Msa0616550:intron 35.0%
AAAGAAAGGGAATGAAACCT+TGG - chr4_2:66455486-66455505 Msa0616550:three_prime_UTR 35.0%
TGTTGAAGTTGAGAAAACTG+AGG - chr4_2:66455576-66455595 Msa0616550:CDS 35.0%
CAGTTTGATTCCTGTTGAAT+TGG - chr4_2:66455645-66455664 Msa0616550:CDS 35.0%
AAATAGATGTGATAAGGTGG+TGG - chr4_2:66455699-66455718 Msa0616550:CDS 35.0%
! GGAGAGTGAAGATTTTATTC+TGG - chr4_2:66455735-66455754 Msa0616550:CDS 35.0%
CCGAACCATTAATTGAGAAT+TGG - chr4_2:66455785-66455804 Msa0616550:CDS 35.0%
ATTGAGAATTGGCACATTTC+TGG - chr4_2:66455796-66455815 Msa0616550:CDS 35.0%
! AGATGTGAGGTTTTCTCAAA+TGG - chr4_2:66455903-66455922 Msa0616550:CDS 35.0%
!!! GGATATTTTGATGGAGAACT+AGG - chr4_2:66455982-66456001 Msa0616550:CDS 35.0%
CTAGGTTCATATGTTTCTCT+AGG - chr4_2:66456000-66456019 Msa0616550:CDS 35.0%
TCATCCATTTGTTCATGATC+AGG + chr4_2:66456203-66456222 None:intergenic 35.0%
GAACAAATGGATGAGTATCA+AGG - chr4_2:66456209-66456228 Msa0616550:CDS 35.0%
TTGTATCCGAAAGAATATCC+TGG + chr4_2:66456235-66456254 None:intergenic 35.0%
TTTAATGCCCAACATGATAG+TGG - chr4_2:66456296-66456315 Msa0616550:CDS 35.0%
! ATGCATGGATTTGAGGTAAA+AGG + chr4_2:66456343-66456362 None:intergenic 35.0%
! GCAACCTCGATTTAAAATCA+TGG + chr4_2:66456370-66456389 None:intergenic 35.0%
TAACCATATGCCTTCATCTT+TGG - chr4_2:66456642-66456661 Msa0616550:CDS 35.0%
TCATTAAGCTCCAAAGATGA+AGG + chr4_2:66456655-66456674 None:intergenic 35.0%
!!! AGAAACTACTTTTTCTCGAG+AGG - chr4_2:66456737-66456756 Msa0616550:CDS 35.0%
!!! TACTTTTTCTCGAGAGGAAA+GGG - chr4_2:66456743-66456762 Msa0616550:CDS 35.0%
! TCATTGGATGGAAGTGTAAT+AGG - chr4_2:66456781-66456800 Msa0616550:CDS 35.0%
AATCCGCATTGAAATCTGAA+AGG - chr4_2:66456842-66456861 Msa0616550:CDS 35.0%
CTTCCTTTCAGATTTCAATG+CGG + chr4_2:66456848-66456867 None:intergenic 35.0%
TTTGCAGTATCAGAGAATGA+TGG - chr4_2:66456990-66457009 Msa0616550:intron 35.0%
AGATGCTGTGTTATATTTGG+AGG - chr4_2:66457299-66457318 Msa0616550:intron 35.0%
!! TGTCAAATTTTGAGGAAGAG+AGG - chr4_2:66457328-66457347 Msa0616550:intron 35.0%
! ACTAGAACAGCTGAAAGTAT+TGG - chr4_2:66457359-66457378 Msa0616550:intron 35.0%
GATTTCCAAGGTCATGTAAA+TGG - chr4_2:66457507-66457526 Msa0616550:CDS 35.0%
CAAATCCATTTACATGACCT+TGG + chr4_2:66457515-66457534 None:intergenic 35.0%
!! ATGGAAAGCATCATCAAGAA+AGG - chr4_2:66457544-66457563 Msa0616550:CDS 35.0%
TCATCAAGAAAGGAAAGTCT+TGG - chr4_2:66457554-66457573 Msa0616550:CDS 35.0%
!! GTACTGATTGCATCAAAAAG+TGG + chr4_2:66457603-66457622 None:intergenic 35.0%
ACTCAACTCTACATCTTCTT+CGG + chr4_2:66457625-66457644 None:intergenic 35.0%
TTCAGCTGAAAAGACCAATT+TGG - chr4_2:66457686-66457705 Msa0616550:CDS 35.0%
!! CAAAAAGGTTGGTTTAGAAG+AGG - chr4_2:66457713-66457732 Msa0616550:CDS 35.0%
TGTATCAGCTCATTGAGAAA+AGG - chr4_2:66457798-66457817 Msa0616550:CDS 35.0%
GTATCAGCTCATTGAGAAAA+GGG - chr4_2:66457799-66457818 Msa0616550:CDS 35.0%
TATCAGCTCATTGAGAAAAG+GGG - chr4_2:66457800-66457819 Msa0616550:CDS 35.0%
TCATTGAGAAAAGGGGATAA+AGG - chr4_2:66457807-66457826 Msa0616550:CDS 35.0%
CATTGAGAAAAGGGGATAAA+GGG - chr4_2:66457808-66457827 Msa0616550:CDS 35.0%
TACAACATCTACGTGATTTG+AGG - chr4_2:66457853-66457872 Msa0616550:CDS 35.0%
AACTCTACCAAAGATATGAC+AGG - chr4_2:66457936-66457955 Msa0616550:CDS 35.0%
TATGCTATAAGCGCTTAGTT+AGG - chr4_2:66458164-66458183 Msa0616550:CDS 35.0%
ATCAAACAGATCATGCTACA+AGG + chr4_2:66458415-66458434 None:intergenic 35.0%
ATCTGTTTGATACAATGTGG+TGG - chr4_2:66458424-66458443 Msa0616550:five_prime_UTR 35.0%
GAACACAACCCACAAAAATT+TGG + chr4_2:66458512-66458531 None:intergenic 35.0%
!! GCTGTCACTTGTATTTTATG+AGG - chr4_2:66458605-66458624 Msa0616550:five_prime_UTR 35.0%
!!! GGCACTGGAATCATTTTTTA+TGG + chr4_2:66458664-66458683 None:intergenic 35.0%
TAAAAAATGATTCCAGTGCC+AGG - chr4_2:66458664-66458683 Msa0616550:five_prime_UTR 35.0%
! AAACAGAGCATCTTCAACCA+TGG - chr4_2:66454641-66454660 Msa0616550:three_prime_UTR 40.0%
! GTTGGTGTTTCTGTGTAACA+TGG + chr4_2:66454685-66454704 None:intergenic 40.0%
TCACACACAAGATCTCTACA+AGG + chr4_2:66454885-66454904 None:intergenic 40.0%
TGTGCTTGTTCTGTTTGTGA+TGG - chr4_2:66455415-66455434 Msa0616550:intron 40.0%
! TTCTGTTTGTGATGGTGTCA+AGG - chr4_2:66455423-66455442 Msa0616550:intron 40.0%
! TGATGGTGTCAAGGAAACTA+TGG - chr4_2:66455432-66455451 Msa0616550:intron 40.0%
TCTCAAAGTTTCCTCTTCCA+AGG + chr4_2:66455506-66455525 None:intergenic 40.0%
ATTGAATGTTCCAAAGGCTC+AGG - chr4_2:66455525-66455544 Msa0616550:CDS 40.0%
GTGGATTCAACCAATTCAAC+AGG + chr4_2:66455658-66455677 None:intergenic 40.0%
! ATTTCCATTTTCTGTGGCAG+TGG + chr4_2:66455677-66455696 None:intergenic 40.0%
!! GCACATTTCTGGTGATATTG+TGG - chr4_2:66455807-66455826 Msa0616550:CDS 40.0%
AAATGTGTCCAAGGTCAATG+AGG - chr4_2:66455855-66455874 Msa0616550:CDS 40.0%
TGATTCAACCTCATTGACCT+TGG + chr4_2:66455866-66455885 None:intergenic 40.0%
GATGATGCATCACAAACTCA+AGG - chr4_2:66456134-66456153 Msa0616550:CDS 40.0%
TCAAGGCCAGGATATTCTTT+CGG - chr4_2:66456226-66456245 Msa0616550:CDS 40.0%
ATTCATCTACTAGCTCAGTC+AGG - chr4_2:66456273-66456292 Msa0616550:CDS 40.0%
AGGCTTACCACTATCATGTT+GGG + chr4_2:66456306-66456325 None:intergenic 40.0%
! TGGTTCTATGCATGGATTTG+AGG + chr4_2:66456350-66456369 None:intergenic 40.0%
GTCGCAGACCTTTATAATGT+TGG - chr4_2:66456391-66456410 Msa0616550:CDS 40.0%
AACTGCAAATGTAGTCGCAT+CGG + chr4_2:66456426-66456445 None:intergenic 40.0%
!! TGTAGTTGATGAAGACTCTC+CGG + chr4_2:66456715-66456734 None:intergenic 40.0%
!!! CTACTTTTTCTCGAGAGGAA+AGG - chr4_2:66456742-66456761 Msa0616550:CDS 40.0%
GTCAGGAACAGAAGATTCAT+TGG - chr4_2:66456765-66456784 Msa0616550:CDS 40.0%
GGAACAGAAGATTCATTGGA+TGG - chr4_2:66456769-66456788 Msa0616550:CDS 40.0%
GTAATAGGCGACATAGAATG+TGG - chr4_2:66456796-66456815 Msa0616550:CDS 40.0%
CGCATTGAAATCTGAAAGGA+AGG - chr4_2:66456846-66456865 Msa0616550:CDS 40.0%
TGTAGCAGCCAATCAAACAA+TGG - chr4_2:66456918-66456937 Msa0616550:intron 40.0%
GAACATCTTCGTGAAGAGAA+CGG - chr4_2:66457447-66457466 Msa0616550:CDS 40.0%
AACATCTTCGTGAAGAGAAC+GGG - chr4_2:66457448-66457467 Msa0616550:CDS 40.0%
GACGATCATGATGATTTCCA+AGG - chr4_2:66457495-66457514 Msa0616550:CDS 40.0%
TCTTGGCTACTAAAGCAAAG+AGG - chr4_2:66457571-66457590 Msa0616550:CDS 40.0%
GAAGAAGATGTAGAGTTGAG+TGG - chr4_2:66457624-66457643 Msa0616550:CDS 40.0%
!! AAAGGTTGGTTTAGAAGAGG+AGG - chr4_2:66457716-66457735 Msa0616550:CDS 40.0%
!! TGAGAGACTACAAGTTTTGG+AGG - chr4_2:66457752-66457771 Msa0616550:CDS 40.0%
TCTACGTGATTTGAGGAATG+TGG - chr4_2:66457860-66457879 Msa0616550:CDS 40.0%
ACACTTGTCATATAAGCCCT+CGG + chr4_2:66458143-66458162 None:intergenic 40.0%
! AAGTGGGCCCAAATTTTTGT+GGG - chr4_2:66458501-66458520 Msa0616550:five_prime_UTR 40.0%
TGATGAGCATATGTGTGTGT+AGG - chr4_2:66458561-66458580 Msa0616550:five_prime_UTR 40.0%
GATGAGCATATGTGTGTGTA+GGG - chr4_2:66458562-66458581 Msa0616550:five_prime_UTR 40.0%
TGAGGTAAGAGTGAAGTTTG+AGG - chr4_2:66458760-66458779 Msa0616550:five_prime_UTR 40.0%
ATTCTTGCACACCACATGCA+GGG + chr4_2:66454828-66454847 None:intergenic 45.0%
AATTCTTGCACACCACATGC+AGG + chr4_2:66454829-66454848 None:intergenic 45.0%
! GGTTTGAGATGTTCTTGCTG+TGG - chr4_2:66455115-66455134 Msa0616550:three_prime_UTR 45.0%
AGGGAATGAAACCTTGGAAG+AGG - chr4_2:66455492-66455511 Msa0616550:three_prime_UTR 45.0%
TGATCATCATCCTGAGCCTT+TGG + chr4_2:66455538-66455557 None:intergenic 45.0%
GAATCCACTGCCACAGAAAA+TGG - chr4_2:66455670-66455689 Msa0616550:CDS 45.0%
! TAGATGTGATAAGGTGGTGG+AGG - chr4_2:66455702-66455721 Msa0616550:CDS 45.0%
TGCATCACAAACTCAAGGTG+AGG - chr4_2:66456139-66456158 Msa0616550:CDS 45.0%
ATCACAAACTCAAGGTGAGG+AGG - chr4_2:66456142-66456161 Msa0616550:CDS 45.0%
AATGGATGAGTATCAAGGCC+AGG - chr4_2:66456214-66456233 Msa0616550:CDS 45.0%
GAGGCTTACCACTATCATGT+TGG + chr4_2:66456307-66456326 None:intergenic 45.0%
!! GGCATATGGTTACTTGCTGT+TGG + chr4_2:66456634-66456653 None:intergenic 45.0%
! GCTCCAAAGATGAAGGCATA+TGG + chr4_2:66456648-66456667 None:intergenic 45.0%
GGAGCTTAATGAGAATGCAG+AGG - chr4_2:66456663-66456682 Msa0616550:CDS 45.0%
!!! TGCGGATTTTAACTCCTCGA+AGG + chr4_2:66456830-66456849 None:intergenic 45.0%
AGAGAAAGCAGCAATGCAGA+TGG - chr4_2:66456963-66456982 Msa0616550:intron 45.0%
ACAATCCGAGTACGATCAAG+AGG - chr4_2:66457017-66457036 Msa0616550:intron 45.0%
CATAGCCTCTTGATCGTACT+CGG + chr4_2:66457025-66457044 None:intergenic 45.0%
GAACTCAGAGTCAGGAACAT+AGG - chr4_2:66457882-66457901 Msa0616550:CDS 45.0%
CAGGAACATAGGAGATCTTG+CGG - chr4_2:66457893-66457912 Msa0616550:CDS 45.0%
AGACAATGGGAGATCCCTAA+TGG - chr4_2:66458377-66458396 Msa0616550:five_prime_UTR 45.0%
GGATTCTCCCTTCTCCATTA+GGG + chr4_2:66458394-66458413 None:intergenic 45.0%
AGGATTCTCCCTTCTCCATT+AGG + chr4_2:66458395-66458414 None:intergenic 45.0%
CACAAAAATTTGGGCCCACT+TGG + chr4_2:66458502-66458521 None:intergenic 45.0%
! CAAGTGGGCCCAAATTTTTG+TGG - chr4_2:66458500-66458519 Msa0616550:five_prime_UTR 45.0%
AAATTCTATGCACCTGGCAC+TGG + chr4_2:66458679-66458698 None:intergenic 45.0%
!! TGCAAACTTGTTGGCAGCCA+TGG + chr4_2:66454661-66454680 None:intergenic 50.0%
! ACCACATGCAGGGTCTTTTC+AGG + chr4_2:66454818-66454837 None:intergenic 50.0%
!! TGTGATAAGGTGGTGGAGGA+AGG - chr4_2:66455706-66455725 Msa0616550:CDS 50.0%
!! GTGATAAGGTGGTGGAGGAA+GGG - chr4_2:66455707-66455726 Msa0616550:CDS 50.0%
TGAAGACTCTCCGGAGAAGT+CGG + chr4_2:66456706-66456725 None:intergenic 50.0%
TTTCTCGAGAGGAAAGGGTC+AGG - chr4_2:66456748-66456767 Msa0616550:CDS 50.0%
TCCTTCTTGTAGCAACGCTG+AGG - chr4_2:66457197-66457216 Msa0616550:CDS 50.0%
TCCTCAGCGTTGCTACAAGA+AGG + chr4_2:66457201-66457220 None:intergenic 50.0%
AGCAACGCTGAGGATAGTGA+TGG - chr4_2:66457207-66457226 Msa0616550:CDS 50.0%
GCAACGCTGAGGATAGTGAT+GGG - chr4_2:66457208-66457227 Msa0616550:CDS 50.0%
!! CAGCATCTACAGGAGTGTTC+TGG + chr4_2:66457287-66457306 None:intergenic 50.0%
CTTCGTGAAGAGAACGGGAA+TGG - chr4_2:66457453-66457472 Msa0616550:CDS 50.0%
!! GGTTGGTTTAGAAGAGGAGG+TGG - chr4_2:66457719-66457738 Msa0616550:CDS 50.0%
GGAATGTGGAACTCAGAGTC+AGG - chr4_2:66457874-66457893 Msa0616550:CDS 50.0%
!! TGTGCTTGGTTTGCAGCATG+TGG + chr4_2:66458275-66458294 None:intergenic 50.0%
GTGCAAACTTCTCGTGTGCT+TGG + chr4_2:66458289-66458308 None:intergenic 50.0%
TGGGAGATCCCTAATGGAGA+AGG - chr4_2:66458383-66458402 Msa0616550:five_prime_UTR 50.0%
GGGAGATCCCTAATGGAGAA+GGG - chr4_2:66458384-66458403 Msa0616550:five_prime_UTR 50.0%
! TAAGACCTGGCTTGCAAAGC+TGG - chr4_2:66458632-66458651 Msa0616550:five_prime_UTR 50.0%
GCCTGAAAAGACCCTGCATG+TGG - chr4_2:66454814-66454833 Msa0616550:three_prime_UTR 55.0%
!! GGTGGTGGAGGAAGGGTTTA+AGG - chr4_2:66455714-66455733 Msa0616550:CDS 55.0%
! ATGTGGTGACGTGACCTTCG+AGG - chr4_2:66456813-66456832 Msa0616550:CDS 55.0%
TCTCTCCAGCTTTGCAAGCC+AGG + chr4_2:66458640-66458659 None:intergenic 55.0%
!! TCCCGACACACCGACTTCTC+CGG - chr4_2:66456693-66456712 Msa0616550:CDS 60.0%
TCCGGAGAAGTCGGTGTGTC+GGG + chr4_2:66456697-66456716 None:intergenic 60.0%
CTCCGGAGAAGTCGGTGTGT+CGG + chr4_2:66456698-66456717 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 66454521 66458921 66454521 ID=Msa0616550;Name=Msa0616550
chr4_2 mRNA 66454521 66458921 66454521 ID=Msa0616550-mRNA-1;Parent=Msa0616550;Name=Msa0616550-mRNA-1;_AED=0.04;_eAED=0.04;_QI=675|1|1|1|0.66|0.5|4|699|788
chr4_2 exon 66454521 66455182 66454521 ID=Msa0616550-mRNA-1:exon:18910;Parent=Msa0616550-mRNA-1
chr4_2 exon 66455485 66456873 66455485 ID=Msa0616550-mRNA-1:exon:18909;Parent=Msa0616550-mRNA-1
chr4_2 exon 66457125 66457313 66457125 ID=Msa0616550-mRNA-1:exon:18908;Parent=Msa0616550-mRNA-1
chr4_2 exon 66457421 66458921 66457421 ID=Msa0616550-mRNA-1:exon:18907;Parent=Msa0616550-mRNA-1
chr4_2 five_prime_UTR 66458247 66458921 66458247 ID=Msa0616550-mRNA-1:five_prime_utr;Parent=Msa0616550-mRNA-1
chr4_2 CDS 66457421 66458246 66457421 ID=Msa0616550-mRNA-1:cds;Parent=Msa0616550-mRNA-1
chr4_2 CDS 66457125 66457313 66457125 ID=Msa0616550-mRNA-1:cds;Parent=Msa0616550-mRNA-1
chr4_2 CDS 66455522 66456873 66455522 ID=Msa0616550-mRNA-1:cds;Parent=Msa0616550-mRNA-1
chr4_2 three_prime_UTR 66455485 66455521 66455485 ID=Msa0616550-mRNA-1:three_prime_utr;Parent=Msa0616550-mRNA-1
chr4_2 three_prime_UTR 66454521 66455182 66454521 ID=Msa0616550-mRNA-1:three_prime_utr;Parent=Msa0616550-mRNA-1
Gene Sequence

>Msa0616550

ATGAACATTTTGGATTATGAACAGAACTCACAGAAGCAGAACATGATCAAAGAAGGTGTGTTTGTCTCAGAAGATGATCATCAGTCAGATCAAAGCAGATCATATTTTGAACTTGATCATCATGAAAATCAACAAAACATTGAAGAAAACAGTGGAATTCATATGTTGTTTGAGGTTGAACATGATTCAGGTACAAAAAAAGTGGAGGCAGAAGAGAATTGTGCTTGTTCTGTTTGTGATGGTGTCAAGGAAACTATGGTTGATGATCTTTACAAGCTTGAATTTGGTGTAAAGAAAGGGAATGAAACCTTGGAAGAGGAAACTTTGAGATTGAATGTTCCAAAGGCTCAGGATGATGATCAAGCTTGTGACAAGACTACTGTTGAAGTTGAGAAAACTGAGGAAATTCCACCTAAACATCTTGAATTTTTCATTCATGGTGATGATTGCAGTTTGATTCCTGTTGAATTGGTTGAATCCACTGCCACAGAAAATGGAAATCAAAATAGATGTGATAAGGTGGTGGAGGAAGGGTTTAAGGAGAGTGAAGATTTTATTCTGGATTTTGGTATGAGTACTGATGCAGAAGCCGAACCATTAATTGAGAATTGGCACATTTCTGGTGATATTGTGGCAGAATTTTCATGTCAAGAGAATAAAAATGTGTCCAAGGTCAATGAGGTTGAATCAGATCAATTGAATTTTCAAGATGTGAGGTTTTCTCAAATGGATGAAGAATTCCATAAGCATGATAATGTTGAAGTAAACATGGAAAGAATGATGAATGGATATTTTGATGGAGAACTAGGTTCATATGTTTCTCTAGCTTCTGATGATGCATCACAAACTCAAGGTGAGGAGGAATATGAAGCAGAAGTATCAATTGGAACTGAAATTCCTGATCATGAACAAATGGATGAGTATCAAGGCCAGGATATTCTTTCGGATACAAATCAACGAATGCAAGAAGATTCATCTACTAGCTCAGTCAGGTTTAATGCCCAACATGATAGTGGTCATGACAGAGATGATGAAGAGTTTGTAGAATTTAAAACCATGTCACTTGAATTAAGAATGCCAACAGCAAGTAACCATATGCCTTCATCTTTGGAGCTTAATGAGAATGCAGAGGAAAAAATTCCCGACACACCGACTTCTCCGGAGAGTCTTCATCAACTACATAAGAAACTACTTTTTCTCGAGAGGAAAGGGTCAGGAACAGAAGATTCATTGGATGGAAGTGTAATAGGCGACATAGAATGTGGTGACGTGACCTTCGAGGAGTTAAAATCCGCATTGAAATCTGAAAGGAAGGCTTTGAAAACACTATATGCAGAGCTAGAAGAAGAAAGAAATGCATCTGCTGTAGCAGCCAATCAAACAATGGCAATGATTAACAGGCTTCAAGAAGAGAAAGCAGCAATGCAGATGGAAGCTTTGCAGTATCAGAGAATGATGGATGAACAATCCGAGTACGATCAAGAGGCTATGCAGATTTTGAATGATCTTATATTGAAGAGGGAGAAAGAGAAGCATGAGCTAGAAAAAGAGCTTGAAGTATATAGAAAAAAGGTTCATGAGTATGAGGTAAGAGAAAAGATTTTGTCAAGAAGAGATAGTAGCATAAGAAGCAGAACTTCATCTCCTTCTTGTAGCAACGCTGAGGATAGTGATGGGTTGTCTATTGATTTCAATCAAGAATCAAAAGAAGAAAATGGTTTTCATAGCAACCAGAACACTCCTGTAGATGCTGTGTTATATTTGGAGGAATCATTGTCAAATTTTGAGGAAGAGAGGTTATCAATACTAGAACAGCTGAAAGTATTGGAAGAAAAGCTAATTATATTGAATTATGAAGATGAAGGACACTGCTTTGATGATACTGTATCGATAGAACATCTTCGTGAAGAGAACGGGAATGGATATCATGATCACGATCATGACGATCATGATGATTTCCAAGGTCATGTAAATGGATTTGCAAATGGTAATGGAAAGCATCATCAAGAAAGGAAAGTCTTGGCTACTAAAGCAAAGAGGCTTCTACCACTTTTTGATGCAATCAGTACCGAAGAAGATGTAGAGTTGAGTGGAGATGAACATGAATTAGACTTTTCTCAGTTGCAAAATGTTTCAGCTGAAAAGACCAATTTGGATAACAAAAAGGTTGGTTTAGAAGAGGAGGTGGATCATGTTTATGAGAGACTACAAGTTTTGGAGGCAGATAGAGAGTTTCTGAAGCATTGTATCAGCTCATTGAGAAAAGGGGATAAAGGGTTAGATCTTCTTCAAGAAATTTTACAACATCTACGTGATTTGAGGAATGTGGAACTCAGAGTCAGGAACATAGGAGATCTTGCGGTGTAA

Protein sequence

>Msa0616550

MNILDYEQNSQKQNMIKEGVFVSEDDHQSDQSRSYFELDHHENQQNIEENSGIHMLFEVEHDSGTKKVEAEENCACSVCDGVKETMVDDLYKLEFGVKKGNETLEEETLRLNVPKAQDDDQACDKTTVEVEKTEEIPPKHLEFFIHGDDCSLIPVELVESTATENGNQNRCDKVVEEGFKESEDFILDFGMSTDAEAEPLIENWHISGDIVAEFSCQENKNVSKVNEVESDQLNFQDVRFSQMDEEFHKHDNVEVNMERMMNGYFDGELGSYVSLASDDASQTQGEEEYEAEVSIGTEIPDHEQMDEYQGQDILSDTNQRMQEDSSTSSVRFNAQHDSGHDRDDEEFVEFKTMSLELRMPTASNHMPSSLELNENAEEKIPDTPTSPESLHQLHKKLLFLERKGSGTEDSLDGSVIGDIECGDVTFEELKSALKSERKALKTLYAELEEERNASAVAANQTMAMINRLQEEKAAMQMEALQYQRMMDEQSEYDQEAMQILNDLILKREKEKHELEKELEVYRKKVHEYEVREKILSRRDSSIRSRTSSPSCSNAEDSDGLSIDFNQESKEENGFHSNQNTPVDAVLYLEESLSNFEEERLSILEQLKVLEEKLIILNYEDEGHCFDDTVSIEHLREENGNGYHDHDHDDHDDFQGHVNGFANGNGKHHQERKVLATKAKRLLPLFDAISTEEDVELSGDEHELDFSQLQNVSAEKTNLDNKKVGLEEEVDHVYERLQVLEADREFLKHCISSLRKGDKGLDLLQEILQHLRDLRNVELRVRNIGDLAV*