AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1218580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1218580 MtrunA17_Chr4g0068171 97.409 193 5 0 1 193 1 193 6.68e-141 390
Msa1218580 MtrunA17_Chr2g0294701 94.301 193 11 0 1 193 1 193 6.01e-138 383
Msa1218580 MtrunA17_Chr7g0271761 90.155 193 19 0 1 193 1 193 2.02e-133 371
Msa1218580 MtrunA17_Chr4g0072861 35.227 176 102 1 18 193 15 178 9.68e-29 105
Msa1218580 MtrunA17_Chr5g0401761 32.768 177 103 2 18 192 15 177 8.54e-26 98.2
Msa1218580 MtrunA17_Chr5g0395631 30.366 191 113 2 3 193 8 178 5.92e-25 95.9
Msa1218580 MtrunA17_Chr8g0373271 34.503 171 101 1 22 192 18 177 7.46e-25 95.5
Msa1218580 MtrunA17_Chr4g0039591 30.366 191 113 2 3 193 8 178 1.02e-24 95.5
Msa1218580 MtrunA17_Chr5g0413451 32.203 177 104 2 18 192 15 177 1.91e-24 94.4
Msa1218580 MtrunA17_Chr5g0413441 32.203 177 104 2 18 192 15 177 1.91e-24 94.4
Msa1218580 MtrunA17_Chr7g0270301 32.203 177 104 2 18 192 15 177 1.97e-24 94.4
Msa1218580 MtrunA17_Chr6g0450081 32.203 177 104 2 18 192 15 177 1.99e-24 94.4
Msa1218580 MtrunA17_Chr1g0194261 32.203 177 104 2 18 192 15 177 2.19e-24 94.4
Msa1218580 MtrunA17_Chr5g0434561 35.526 152 96 2 1 151 1 151 2.18e-23 91.7
Msa1218580 MtrunA17_Chr1g0188111 34.503 171 100 2 19 189 16 174 7.94e-23 90.1
Msa1218580 MtrunA17_Chr4g0012371 31.818 176 101 3 22 193 2 162 9.01e-23 89.7
Msa1218580 MtrunA17_Chr2g0287721 37.267 161 83 4 3 151 1 155 9.85e-23 90.5
Msa1218580 MtrunA17_Chr5g0395641 28.866 194 114 4 3 193 8 180 3.20e-22 89.0
Msa1218580 MtrunA17_Chr5g0401071 30.928 194 120 3 1 193 1 181 4.66e-22 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1218580 AT4G02080.1 91.192 193 17 0 1 193 1 193 9.51e-135 375
Msa1218580 AT3G62560.1 91.667 192 16 0 1 192 1 192 1.35e-133 372
Msa1218580 AT1G56330.1 91.667 192 16 0 1 192 1 192 8.46e-133 370
Msa1218580 AT1G09180.1 87.565 193 24 0 1 193 1 193 7.98e-127 355
Msa1218580 AT1G02620.1 86.486 111 15 0 83 193 12 122 4.57e-69 206
Msa1218580 AT2G24765.1 35.795 176 101 1 18 193 15 178 1.79e-28 105
Msa1218580 AT3G49870.1 32.990 194 116 3 1 193 1 181 3.32e-26 99.4
Msa1218580 AT5G67560.1 32.474 194 117 3 1 193 1 181 1.92e-25 97.4
Msa1218580 AT3G49870.2 34.118 170 99 2 25 193 5 162 4.79e-25 95.9
Msa1218580 AT2G18390.1 34.503 171 101 1 22 192 18 177 6.79e-25 96.3
Msa1218580 AT5G17060.2 30.890 191 112 2 3 193 8 178 7.78e-25 96.3
Msa1218580 AT5G17060.1 30.890 191 112 2 3 193 8 178 7.78e-25 96.3
Msa1218580 AT5G14670.2 32.203 177 104 2 18 192 15 177 2.63e-24 94.4
Msa1218580 AT5G14670.3 32.203 177 104 2 18 192 15 177 2.63e-24 94.4
Msa1218580 AT1G23490.1 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1218580 AT1G70490.2 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1218580 AT1G70490.7 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1218580 AT1G70490.4 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1218580 AT1G70490.3 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1218580 AT1G70490.1 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1218580 AT1G70490.6 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1218580 AT1G70490.5 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa1218580 AT2G47170.2 32.203 177 104 2 18 192 15 177 3.09e-24 94.4
Msa1218580 AT2G47170.1 32.203 177 104 2 18 192 15 177 3.09e-24 94.4
Msa1218580 AT2G47170.3 32.203 177 104 2 18 192 15 177 3.09e-24 94.4
Msa1218580 AT3G62290.3 32.203 177 104 2 18 192 15 177 3.12e-24 94.4
Msa1218580 AT3G62290.1 32.203 177 104 2 18 192 15 177 3.12e-24 94.4
Msa1218580 AT3G62290.2 32.203 177 104 2 18 192 15 177 3.12e-24 94.4
Msa1218580 AT5G37680.1 36.601 153 95 2 1 152 1 152 3.18e-24 94.4
Msa1218580 AT1G10630.1 32.203 177 104 2 18 192 15 177 3.22e-24 94.4
Msa1218580 AT1G10630.2 32.203 177 104 2 18 192 15 177 3.22e-24 94.4
Msa1218580 AT5G14670.1 32.203 177 104 2 18 192 15 177 3.32e-24 94.4
Msa1218580 AT2G24765.2 42.478 113 65 0 18 130 15 127 3.48e-24 92.8
Msa1218580 AT3G03120.1 30.890 191 112 3 3 193 8 178 2.53e-23 92.4
Msa1218580 AT3G22950.1 33.908 174 103 3 19 192 16 177 8.90e-23 90.5
Msa1218580 AT3G22950.2 33.908 174 103 3 19 192 16 177 8.90e-23 90.5
Msa1218580 AT2G15310.1 31.073 177 110 1 16 192 13 177 3.34e-22 89.7
Msa1218580 AT3G49860.1 35.000 140 90 1 15 153 6 145 9.69e-22 87.8
Msa1218580 AT3G03120.2 32.824 131 80 1 3 133 8 130 7.81e-21 84.3
Msa1218580 AT5G52210.1 36.913 149 76 3 15 148 7 152 7.33e-20 83.6
Msa1218580 AT5G52210.2 36.913 149 76 3 15 148 7 152 7.33e-20 83.6
Msa1218580 AT5G37680.2 40.777 103 61 0 50 152 3 105 1.50e-19 80.9
Msa1218580 AT1G02430.2 31.206 141 89 4 18 151 15 154 3.36e-15 70.1
Msa1218580 AT1G02430.1 31.206 141 89 4 18 151 15 154 5.29e-15 70.1

Find 60 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGCTCCTTCTTTGATTC+TGG 0.179657 8_1:+81224837 None:intergenic
GCTTTCTCAGTATATTAAAT+AGG 0.199871 8_1:-81224586 Msa1218580:exon
TATACTTTGCTCATGTAAAT+TGG 0.251390 8_1:-81224487 Msa1218580:three_prime_UTR
CTTCGGAAGAATTGAGTATT+GGG 0.315137 8_1:-81225589 Msa1218580:CDS
AATGTACCTTTCCTTATCTT+AGG 0.333519 8_1:-81224786 Msa1218580:CDS
ATTGGATAATAATAGTTAAA+TGG 0.341144 8_1:-81224469 Msa1218580:three_prime_UTR
TCCAGACTCTACGAGCAATT+TGG 0.346671 8_1:+81225531 None:intergenic
TGACTCCAATGTCCGTCCTT+TGG 0.348016 8_1:-81224664 Msa1218580:CDS
TTTGACGTGACTGTGGTCTT+TGG 0.350821 8_1:-81226048 Msa1218580:five_prime_UTR
ACCAAATTGCTCGTAGAGTC+TGG 0.380274 8_1:-81225532 Msa1218580:CDS
TCCAGTTGTAGGGGTTTGAT+TGG 0.387214 8_1:+81225974 None:intergenic
GTTGTAGGGGTTTGATTGGT+TGG 0.389067 8_1:+81225978 None:intergenic
TATGGAATTCTTGCTACCCT+TGG 0.394725 8_1:-81225820 Msa1218580:CDS
AATTGCAGAATTAATAATAG+TGG 0.399953 8_1:-81224364 Msa1218580:three_prime_UTR
ACCAATCAAACCCCTACAAC+TGG 0.401710 8_1:-81225975 Msa1218580:five_prime_UTR
CTTTCTCAGTATATTAAATA+GGG 0.415038 8_1:-81224585 Msa1218580:exon
CAATCTTGTTTCCTAAGATA+AGG 0.427363 8_1:+81224775 None:intergenic
ATACTCAATTCTTCCGAAGT+TGG 0.431342 8_1:+81225593 None:intergenic
ATTCAGAAATTCCAGTTGTA+GGG 0.440614 8_1:+81225964 None:intergenic
ACTTCGGAAGAATTGAGTAT+TGG 0.450496 8_1:-81225590 Msa1218580:CDS
GATTCAGAAATTCCAGTTGT+AGG 0.456614 8_1:+81225963 None:intergenic
GATTGGTTGGTACGCGTCAT+CGG 0.459740 8_1:+81225991 None:intergenic
ATTGTTCGCAAGATGGGATA+TGG 0.464211 8_1:-81224624 Msa1218580:CDS
TGTCTTCAGCGTATATATAG+TGG 0.466437 8_1:+81225935 None:intergenic
TCATCCTCTGATGCAGCATA+AGG 0.468463 8_1:+81224747 None:intergenic
TGTAGTATTGTTCGCAAGAT+GGG 0.483741 8_1:-81224630 Msa1218580:CDS
CTCCAATGTCCGTCCTTTGG+AGG 0.487360 8_1:-81224661 Msa1218580:CDS
TCCGAAGTTGGATGTTGTGT+TGG 0.497799 8_1:+81225605 None:intergenic
TTACTTAAAAGAAATGGTAC+AGG 0.501012 8_1:+81226141 None:intergenic
TAGTTCTGAAACTTGCATGT+AGG 0.504331 8_1:-81224426 Msa1218580:three_prime_UTR
GGATTGACTAACTTCACTAC+AGG 0.520704 8_1:-81224708 Msa1218580:CDS
GTGTAGTATTGTTCGCAAGA+TGG 0.522465 8_1:-81224631 Msa1218580:CDS
TCCAGAATCAAAGAAGGAGC+TGG 0.545473 8_1:-81224838 Msa1218580:CDS
CTGGAGGGACTATTATGCTC+AGG 0.546159 8_1:-81225513 Msa1218580:intron
TAATAATTAGAGTAAATCTG+TGG 0.546406 8_1:-81226079 Msa1218580:five_prime_UTR
CATTCCTTATGCTGCATCAG+AGG 0.549318 8_1:-81224751 Msa1218580:CDS
AATAATTAGAGTAAATCTGT+GGG 0.550383 8_1:-81226078 Msa1218580:five_prime_UTR
GACTAACTTCACTACAGGCA+AGG 0.551563 8_1:-81224703 Msa1218580:CDS
AAGATTTCCAGAATCAAAGA+AGG 0.553734 8_1:-81224844 Msa1218580:CDS
CTTCTTGCTGATGAGTCACT+AGG 0.554172 8_1:-81224810 Msa1218580:CDS
CGCAAGATGGGATATGGTGA+AGG 0.562040 8_1:-81224618 Msa1218580:CDS
CACCTCCAAAGGACGGACAT+TGG 0.563163 8_1:+81224659 None:intergenic
ATACGCTGAAGACAAATACT+TGG 0.563987 8_1:-81225926 Msa1218580:five_prime_UTR
TTCTTGCTACCCTTGGTCTG+TGG 0.568404 8_1:-81225813 Msa1218580:CDS
GGTGGATGCTGTAGTCTACC+TGG 0.579563 8_1:-81224886 Msa1218580:CDS
TTCAGAAATTCCAGTTGTAG+GGG 0.582471 8_1:+81225965 None:intergenic
CCTTGTCAAATGCATCAACC+AGG 0.583815 8_1:+81224868 None:intergenic
TTGTTTCCTAAGATAAGGAA+AGG 0.590342 8_1:+81224780 None:intergenic
CCTGGTTGATGCATTTGACA+AGG 0.590610 8_1:-81224868 Msa1218580:CDS
ACTAACTTCACTACAGGCAA+GGG 0.591515 8_1:-81224702 Msa1218580:CDS
CTACACATGAACACCTCCAA+AGG 0.598493 8_1:+81224648 None:intergenic
ACCAACACAACATCCAACTT+CGG 0.598906 8_1:-81225606 Msa1218580:CDS
CTTCAGCGTATATATAGTGG+AGG 0.605705 8_1:+81225938 None:intergenic
GATATGGTGAAGGCTTTCAG+TGG 0.632785 8_1:-81224608 Msa1218580:CDS
ACATGAACACCTCCAAAGGA+CGG 0.637700 8_1:+81224652 None:intergenic
AATTGCTCGTAGAGTCTGGA+GGG 0.640603 8_1:-81225528 Msa1218580:CDS
GCTTCACATGCTCAAAGACG+AGG 0.649498 8_1:-81225734 Msa1218580:intron
TGGTTGGTACGCGTCATCGG+AGG 0.666989 8_1:+81225994 None:intergenic
TTCAGCGTATATATAGTGGA+GGG 0.675270 8_1:+81225939 None:intergenic
AAATTGCTCGTAGAGTCTGG+AGG 0.706522 8_1:-81225529 Msa1218580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTACTTAAAAGAAA+TGG + chr8_1:81224458-81224477 None:intergenic 10.0%
!!! AATTTTTTACTTAAAAGAAA+TGG + chr8_1:81224458-81224477 None:intergenic 10.0%
!!! ATAAAATGTTTCTTTTTGAT+TGG - chr8_1:81224744-81224763 Msa1218580:CDS 15.0%
!!! TAACCCTAAAAATAAAATTT+TGG + chr8_1:81224813-81224832 None:intergenic 15.0%
!!! ATGTTAATTGTAGATTTTTA+TGG - chr8_1:81225677-81225696 Msa1218580:intron 15.0%
!! ATTGGATAATAATAGTTAAA+TGG - chr8_1:81226121-81226140 Msa1218580:five_prime_UTR 15.0%
!!! ATAAAATGTTTCTTTTTGAT+TGG - chr8_1:81224744-81224763 Msa1218580:CDS 15.0%
!!! TAACCCTAAAAATAAAATTT+TGG + chr8_1:81224813-81224832 None:intergenic 15.0%
!!! ATGTTAATTGTAGATTTTTA+TGG - chr8_1:81225677-81225696 Msa1218580:intron 15.0%
!! ATTGGATAATAATAGTTAAA+TGG - chr8_1:81226121-81226140 Msa1218580:five_prime_UTR 15.0%
!!! TTCTCAAATTACATTTTGAA+GGG + chr8_1:81224397-81224416 None:intergenic 20.0%
!!! TTTCTCAAATTACATTTTGA+AGG + chr8_1:81224398-81224417 None:intergenic 20.0%
!! TAATAATTAGAGTAAATCTG+TGG - chr8_1:81224511-81224530 Msa1218580:three_prime_UTR 20.0%
!! AATAATTAGAGTAAATCTGT+GGG - chr8_1:81224512-81224531 Msa1218580:three_prime_UTR 20.0%
!!! AAAGAAACATTTTATTCAAC+CGG + chr8_1:81224739-81224758 None:intergenic 20.0%
!!! TTTCTTTTTGATTGGTTTTA+TGG - chr8_1:81224752-81224771 Msa1218580:CDS 20.0%
!!! AGGCCAAAATTTTATTTTTA+GGG - chr8_1:81224807-81224826 Msa1218580:CDS 20.0%
!!! AAAGTTTAAAGCTTTTGATT+TGG - chr8_1:81225029-81225048 Msa1218580:intron 20.0%
!!! AAGTTTAAAGCTTTTGATTT+GGG - chr8_1:81225030-81225049 Msa1218580:intron 20.0%
!! CTTTCTCAGTATATTAAATA+GGG - chr8_1:81226005-81226024 Msa1218580:five_prime_UTR 20.0%
!! AATTGCAGAATTAATAATAG+TGG - chr8_1:81226226-81226245 Msa1218580:five_prime_UTR 20.0%
!!! TTCTCAAATTACATTTTGAA+GGG + chr8_1:81224397-81224416 None:intergenic 20.0%
!!! TTTCTCAAATTACATTTTGA+AGG + chr8_1:81224398-81224417 None:intergenic 20.0%
!! TAATAATTAGAGTAAATCTG+TGG - chr8_1:81224511-81224530 Msa1218580:three_prime_UTR 20.0%
!! AATAATTAGAGTAAATCTGT+GGG - chr8_1:81224512-81224531 Msa1218580:three_prime_UTR 20.0%
!!! AAAGAAACATTTTATTCAAC+CGG + chr8_1:81224739-81224758 None:intergenic 20.0%
!!! TTTCTTTTTGATTGGTTTTA+TGG - chr8_1:81224752-81224771 Msa1218580:CDS 20.0%
!!! AGGCCAAAATTTTATTTTTA+GGG - chr8_1:81224807-81224826 Msa1218580:CDS 20.0%
!!! AAAGTTTAAAGCTTTTGATT+TGG - chr8_1:81225029-81225048 Msa1218580:intron 20.0%
!!! AAGTTTAAAGCTTTTGATTT+GGG - chr8_1:81225030-81225049 Msa1218580:intron 20.0%
!! CTTTCTCAGTATATTAAATA+GGG - chr8_1:81226005-81226024 Msa1218580:five_prime_UTR 20.0%
!! AATTGCAGAATTAATAATAG+TGG - chr8_1:81226226-81226245 Msa1218580:five_prime_UTR 20.0%
! TTACTTAAAAGAAATGGTAC+AGG + chr8_1:81224452-81224471 None:intergenic 25.0%
!!! GAGGCCAAAATTTTATTTTT+AGG - chr8_1:81224806-81224825 Msa1218580:CDS 25.0%
!! CAGGTAATTTCTTTTATGAA+TGG - chr8_1:81225096-81225115 Msa1218580:intron 25.0%
! TCTCAACCACATTTAAATTT+AGG - chr8_1:81225227-81225246 Msa1218580:intron 25.0%
! CTCAACCACATTTAAATTTA+GGG - chr8_1:81225228-81225247 Msa1218580:intron 25.0%
! TCAACCACATTTAAATTTAG+GGG - chr8_1:81225229-81225248 Msa1218580:intron 25.0%
! AGTGCTTTCAAAACAAATAT+GGG + chr8_1:81225350-81225369 None:intergenic 25.0%
! AAGTGCTTTCAAAACAAATA+TGG + chr8_1:81225351-81225370 None:intergenic 25.0%
! TAGTTTGAGAAAAATGAAAG+TGG - chr8_1:81225467-81225486 Msa1218580:intron 25.0%
! CAATGCATATGATTATGTTA+AGG + chr8_1:81225608-81225627 None:intergenic 25.0%
!! ATTGTAGATTTTTATGGTAC+AGG - chr8_1:81225683-81225702 Msa1218580:intron 25.0%
!! GATGAATTACGTTTTCATTT+GGG - chr8_1:81225861-81225880 Msa1218580:exon 25.0%
! GCTTTCTCAGTATATTAAAT+AGG - chr8_1:81226004-81226023 Msa1218580:five_prime_UTR 25.0%
! TATACTTTGCTCATGTAAAT+TGG - chr8_1:81226103-81226122 Msa1218580:five_prime_UTR 25.0%
! TTACTTAAAAGAAATGGTAC+AGG + chr8_1:81224452-81224471 None:intergenic 25.0%
!!! GAGGCCAAAATTTTATTTTT+AGG - chr8_1:81224806-81224825 Msa1218580:CDS 25.0%
!! CAGGTAATTTCTTTTATGAA+TGG - chr8_1:81225096-81225115 Msa1218580:intron 25.0%
! TCTCAACCACATTTAAATTT+AGG - chr8_1:81225227-81225246 Msa1218580:intron 25.0%
! CTCAACCACATTTAAATTTA+GGG - chr8_1:81225228-81225247 Msa1218580:intron 25.0%
! TCAACCACATTTAAATTTAG+GGG - chr8_1:81225229-81225248 Msa1218580:intron 25.0%
! AGTGCTTTCAAAACAAATAT+GGG + chr8_1:81225350-81225369 None:intergenic 25.0%
! AAGTGCTTTCAAAACAAATA+TGG + chr8_1:81225351-81225370 None:intergenic 25.0%
! TAGTTTGAGAAAAATGAAAG+TGG - chr8_1:81225467-81225486 Msa1218580:intron 25.0%
! CAATGCATATGATTATGTTA+AGG + chr8_1:81225608-81225627 None:intergenic 25.0%
!! ATTGTAGATTTTTATGGTAC+AGG - chr8_1:81225683-81225702 Msa1218580:intron 25.0%
!! GATGAATTACGTTTTCATTT+GGG - chr8_1:81225861-81225880 Msa1218580:exon 25.0%
! GCTTTCTCAGTATATTAAAT+AGG - chr8_1:81226004-81226023 Msa1218580:five_prime_UTR 25.0%
! TATACTTTGCTCATGTAAAT+TGG - chr8_1:81226103-81226122 Msa1218580:five_prime_UTR 25.0%
ATTCAGAAATTCCAGTTGTA+GGG + chr8_1:81224629-81224648 None:intergenic 30.0%
!!! GTTTTTGTTTCTGAAGTTTC+CGG - chr8_1:81224717-81224736 Msa1218580:CDS 30.0%
!!! TTTTTAGGGTTAGATAATGC+TGG - chr8_1:81224821-81224840 Msa1218580:CDS 30.0%
!!! TTTAAAGCTTTTGATTTGGG+TGG - chr8_1:81225033-81225052 Msa1218580:intron 30.0%
CAACCACATTTAAATTTAGG+GGG - chr8_1:81225230-81225249 Msa1218580:intron 30.0%
TTAAATTTAGGGGGTTCATA+AGG - chr8_1:81225239-81225258 Msa1218580:intron 30.0%
TTAAATGTAACCACATGTGT+TGG - chr8_1:81225490-81225509 Msa1218580:intron 30.0%
AAGATTTCCAGAATCAAAGA+AGG - chr8_1:81225746-81225765 Msa1218580:CDS 30.0%
AATGTACCTTTCCTTATCTT+AGG - chr8_1:81225804-81225823 Msa1218580:CDS 30.0%
TTGTTTCCTAAGATAAGGAA+AGG + chr8_1:81225813-81225832 None:intergenic 30.0%
! CAATCTTGTTTCCTAAGATA+AGG + chr8_1:81225818-81225837 None:intergenic 30.0%
! GGATGAATTACGTTTTCATT+TGG - chr8_1:81225860-81225879 Msa1218580:exon 30.0%
TCAAATTATAACCCTGACAA+AGG + chr8_1:81224365-81224384 None:intergenic 30.0%
ATTCAGAAATTCCAGTTGTA+GGG + chr8_1:81224629-81224648 None:intergenic 30.0%
!!! GTTTTTGTTTCTGAAGTTTC+CGG - chr8_1:81224717-81224736 Msa1218580:CDS 30.0%
!!! TTTTTAGGGTTAGATAATGC+TGG - chr8_1:81224821-81224840 Msa1218580:CDS 30.0%
!!! TTTAAAGCTTTTGATTTGGG+TGG - chr8_1:81225033-81225052 Msa1218580:intron 30.0%
CAACCACATTTAAATTTAGG+GGG - chr8_1:81225230-81225249 Msa1218580:intron 30.0%
TTAAATTTAGGGGGTTCATA+AGG - chr8_1:81225239-81225258 Msa1218580:intron 30.0%
TTAAATGTAACCACATGTGT+TGG - chr8_1:81225490-81225509 Msa1218580:intron 30.0%
AAGATTTCCAGAATCAAAGA+AGG - chr8_1:81225746-81225765 Msa1218580:CDS 30.0%
AATGTACCTTTCCTTATCTT+AGG - chr8_1:81225804-81225823 Msa1218580:CDS 30.0%
TTGTTTCCTAAGATAAGGAA+AGG + chr8_1:81225813-81225832 None:intergenic 30.0%
! CAATCTTGTTTCCTAAGATA+AGG + chr8_1:81225818-81225837 None:intergenic 30.0%
! GGATGAATTACGTTTTCATT+TGG - chr8_1:81225860-81225879 Msa1218580:exon 30.0%
!!! TTTGTTTTTTGACGTGACTG+TGG - chr8_1:81224535-81224554 Msa1218580:three_prime_UTR 35.0%
TTCAGAAATTCCAGTTGTAG+GGG + chr8_1:81224628-81224647 None:intergenic 35.0%
GATTCAGAAATTCCAGTTGT+AGG + chr8_1:81224630-81224649 None:intergenic 35.0%
! TTCAGCGTATATATAGTGGA+GGG + chr8_1:81224654-81224673 None:intergenic 35.0%
TGTCTTCAGCGTATATATAG+TGG + chr8_1:81224658-81224677 None:intergenic 35.0%
ATACGCTGAAGACAAATACT+TGG - chr8_1:81224664-81224683 Msa1218580:CDS 35.0%
ATACTCAATTCTTCCGAAGT+TGG + chr8_1:81225000-81225019 None:intergenic 35.0%
ACTTCGGAAGAATTGAGTAT+TGG - chr8_1:81225000-81225019 Msa1218580:intron 35.0%
CTTCGGAAGAATTGAGTATT+GGG - chr8_1:81225001-81225020 Msa1218580:intron 35.0%
GAACCCCCTAAATTTAAATG+TGG + chr8_1:81225236-81225255 None:intergenic 35.0%
!!! GTTTTGAAAGCACTTATGCT+TGG - chr8_1:81225356-81225375 Msa1218580:intron 35.0%
! GTAGATTTTTATGGTACAGG+TGG - chr8_1:81225686-81225705 Msa1218580:intron 35.0%
TGTAGTATTGTTCGCAAGAT+GGG - chr8_1:81225960-81225979 Msa1218580:five_prime_UTR 35.0%
!! TAGTTCTGAAACTTGCATGT+AGG - chr8_1:81226164-81226183 Msa1218580:five_prime_UTR 35.0%
!!! TTTGTTTTTTGACGTGACTG+TGG - chr8_1:81224535-81224554 Msa1218580:three_prime_UTR 35.0%
TTCAGAAATTCCAGTTGTAG+GGG + chr8_1:81224628-81224647 None:intergenic 35.0%
GATTCAGAAATTCCAGTTGT+AGG + chr8_1:81224630-81224649 None:intergenic 35.0%
! TTCAGCGTATATATAGTGGA+GGG + chr8_1:81224654-81224673 None:intergenic 35.0%
TGTCTTCAGCGTATATATAG+TGG + chr8_1:81224658-81224677 None:intergenic 35.0%
ATACGCTGAAGACAAATACT+TGG - chr8_1:81224664-81224683 Msa1218580:CDS 35.0%
ATACTCAATTCTTCCGAAGT+TGG + chr8_1:81225000-81225019 None:intergenic 35.0%
ACTTCGGAAGAATTGAGTAT+TGG - chr8_1:81225000-81225019 Msa1218580:intron 35.0%
CTTCGGAAGAATTGAGTATT+GGG - chr8_1:81225001-81225020 Msa1218580:intron 35.0%
GAACCCCCTAAATTTAAATG+TGG + chr8_1:81225236-81225255 None:intergenic 35.0%
!!! GTTTTGAAAGCACTTATGCT+TGG - chr8_1:81225356-81225375 Msa1218580:intron 35.0%
! GTAGATTTTTATGGTACAGG+TGG - chr8_1:81225686-81225705 Msa1218580:intron 35.0%
TGTAGTATTGTTCGCAAGAT+GGG - chr8_1:81225960-81225979 Msa1218580:five_prime_UTR 35.0%
!! TAGTTCTGAAACTTGCATGT+AGG - chr8_1:81226164-81226183 Msa1218580:five_prime_UTR 35.0%
CTTCAGCGTATATATAGTGG+AGG + chr8_1:81224655-81224674 None:intergenic 40.0%
TATGGAATTCTTGCTACCCT+TGG - chr8_1:81224770-81224789 Msa1218580:CDS 40.0%
ACCAACACAACATCCAACTT+CGG - chr8_1:81224984-81225003 Msa1218580:intron 40.0%
GTACACTGTCAGTGTTCTAT+AGG - chr8_1:81225393-81225412 Msa1218580:intron 40.0%
! CACATGTGTTGGTATCTTGT+CGG - chr8_1:81225501-81225520 Msa1218580:intron 40.0%
GGATTGACTAACTTCACTAC+AGG - chr8_1:81225882-81225901 Msa1218580:five_prime_UTR 40.0%
ACTAACTTCACTACAGGCAA+GGG - chr8_1:81225888-81225907 Msa1218580:five_prime_UTR 40.0%
GTGTAGTATTGTTCGCAAGA+TGG - chr8_1:81225959-81225978 Msa1218580:five_prime_UTR 40.0%
ATTGTTCGCAAGATGGGATA+TGG - chr8_1:81225966-81225985 Msa1218580:five_prime_UTR 40.0%
CTTCAGCGTATATATAGTGG+AGG + chr8_1:81224655-81224674 None:intergenic 40.0%
TATGGAATTCTTGCTACCCT+TGG - chr8_1:81224770-81224789 Msa1218580:CDS 40.0%
ACCAACACAACATCCAACTT+CGG - chr8_1:81224984-81225003 Msa1218580:intron 40.0%
GTACACTGTCAGTGTTCTAT+AGG - chr8_1:81225393-81225412 Msa1218580:intron 40.0%
! CACATGTGTTGGTATCTTGT+CGG - chr8_1:81225501-81225520 Msa1218580:intron 40.0%
GGATTGACTAACTTCACTAC+AGG - chr8_1:81225882-81225901 Msa1218580:five_prime_UTR 40.0%
ACTAACTTCACTACAGGCAA+GGG - chr8_1:81225888-81225907 Msa1218580:five_prime_UTR 40.0%
GTGTAGTATTGTTCGCAAGA+TGG - chr8_1:81225959-81225978 Msa1218580:five_prime_UTR 40.0%
ATTGTTCGCAAGATGGGATA+TGG - chr8_1:81225966-81225985 Msa1218580:five_prime_UTR 40.0%
TTTGACGTGACTGTGGTCTT+TGG - chr8_1:81224542-81224561 Msa1218580:three_prime_UTR 45.0%
GTTGTAGGGGTTTGATTGGT+TGG + chr8_1:81224615-81224634 None:intergenic 45.0%
ACCAATCAAACCCCTACAAC+TGG - chr8_1:81224615-81224634 Msa1218580:CDS 45.0%
TCCAGTTGTAGGGGTTTGAT+TGG + chr8_1:81224619-81224638 None:intergenic 45.0%
! CTCTTTTTGCCACAGACCAA+GGG + chr8_1:81224789-81224808 None:intergenic 45.0%
TCCGAAGTTGGATGTTGTGT+TGG + chr8_1:81224988-81225007 None:intergenic 45.0%
ACCAAATTGCTCGTAGAGTC+TGG - chr8_1:81225058-81225077 Msa1218580:intron 45.0%
TCCAGACTCTACGAGCAATT+TGG + chr8_1:81225062-81225081 None:intergenic 45.0%
AAATTGCTCGTAGAGTCTGG+AGG - chr8_1:81225061-81225080 Msa1218580:intron 45.0%
AATTGCTCGTAGAGTCTGGA+GGG - chr8_1:81225062-81225081 Msa1218580:intron 45.0%
TAACCCGGACTCACTTTGAT+TGG + chr8_1:81225318-81225337 None:intergenic 45.0%
AATCAAAGTGAGTCCGGGTT+AGG - chr8_1:81225317-81225336 Msa1218580:intron 45.0%
! TATGGGTTACTCTCCTAACC+CGG + chr8_1:81225333-81225352 None:intergenic 45.0%
TGCGTCAGTGATTCATAGCT+CGG + chr8_1:81225430-81225449 None:intergenic 45.0%
CGACAAGATACCAACACATG+TGG + chr8_1:81225503-81225522 None:intergenic 45.0%
TTGGTATCTTGTCGGTGTGT+TGG - chr8_1:81225509-81225528 Msa1218580:intron 45.0%
AGCGTGAACGTAATCATGTG+TGG - chr8_1:81225638-81225657 Msa1218580:intron 45.0%
GCGTGAACGTAATCATGTGT+GGG - chr8_1:81225639-81225658 Msa1218580:intron 45.0%
CCTTGTCAAATGCATCAACC+AGG + chr8_1:81225725-81225744 None:intergenic 45.0%
! CCTGGTTGATGCATTTGACA+AGG - chr8_1:81225722-81225741 Msa1218580:intron 45.0%
TCCAGAATCAAAGAAGGAGC+TGG - chr8_1:81225752-81225771 Msa1218580:CDS 45.0%
TCCAGCTCCTTCTTTGATTC+TGG + chr8_1:81225756-81225775 None:intergenic 45.0%
CTTCTTGCTGATGAGTCACT+AGG - chr8_1:81225780-81225799 Msa1218580:CDS 45.0%
CATTCCTTATGCTGCATCAG+AGG - chr8_1:81225839-81225858 Msa1218580:CDS 45.0%
TCATCCTCTGATGCAGCATA+AGG + chr8_1:81225846-81225865 None:intergenic 45.0%
GACTAACTTCACTACAGGCA+AGG - chr8_1:81225887-81225906 Msa1218580:five_prime_UTR 45.0%
ACATGAACACCTCCAAAGGA+CGG + chr8_1:81225941-81225960 None:intergenic 45.0%
CTACACATGAACACCTCCAA+AGG + chr8_1:81225945-81225964 None:intergenic 45.0%
GATATGGTGAAGGCTTTCAG+TGG - chr8_1:81225982-81226001 Msa1218580:five_prime_UTR 45.0%
TTTGACGTGACTGTGGTCTT+TGG - chr8_1:81224542-81224561 Msa1218580:three_prime_UTR 45.0%
GTTGTAGGGGTTTGATTGGT+TGG + chr8_1:81224615-81224634 None:intergenic 45.0%
ACCAATCAAACCCCTACAAC+TGG - chr8_1:81224615-81224634 Msa1218580:CDS 45.0%
TCCAGTTGTAGGGGTTTGAT+TGG + chr8_1:81224619-81224638 None:intergenic 45.0%
! CTCTTTTTGCCACAGACCAA+GGG + chr8_1:81224789-81224808 None:intergenic 45.0%
TCCGAAGTTGGATGTTGTGT+TGG + chr8_1:81224988-81225007 None:intergenic 45.0%
ACCAAATTGCTCGTAGAGTC+TGG - chr8_1:81225058-81225077 Msa1218580:intron 45.0%
TCCAGACTCTACGAGCAATT+TGG + chr8_1:81225062-81225081 None:intergenic 45.0%
AAATTGCTCGTAGAGTCTGG+AGG - chr8_1:81225061-81225080 Msa1218580:intron 45.0%
AATTGCTCGTAGAGTCTGGA+GGG - chr8_1:81225062-81225081 Msa1218580:intron 45.0%
TAACCCGGACTCACTTTGAT+TGG + chr8_1:81225318-81225337 None:intergenic 45.0%
AATCAAAGTGAGTCCGGGTT+AGG - chr8_1:81225317-81225336 Msa1218580:intron 45.0%
! TATGGGTTACTCTCCTAACC+CGG + chr8_1:81225333-81225352 None:intergenic 45.0%
TGCGTCAGTGATTCATAGCT+CGG + chr8_1:81225430-81225449 None:intergenic 45.0%
CGACAAGATACCAACACATG+TGG + chr8_1:81225503-81225522 None:intergenic 45.0%
TTGGTATCTTGTCGGTGTGT+TGG - chr8_1:81225509-81225528 Msa1218580:intron 45.0%
AGCGTGAACGTAATCATGTG+TGG - chr8_1:81225638-81225657 Msa1218580:intron 45.0%
GCGTGAACGTAATCATGTGT+GGG - chr8_1:81225639-81225658 Msa1218580:intron 45.0%
CCTTGTCAAATGCATCAACC+AGG + chr8_1:81225725-81225744 None:intergenic 45.0%
! CCTGGTTGATGCATTTGACA+AGG - chr8_1:81225722-81225741 Msa1218580:intron 45.0%
TCCAGAATCAAAGAAGGAGC+TGG - chr8_1:81225752-81225771 Msa1218580:CDS 45.0%
TCCAGCTCCTTCTTTGATTC+TGG + chr8_1:81225756-81225775 None:intergenic 45.0%
CTTCTTGCTGATGAGTCACT+AGG - chr8_1:81225780-81225799 Msa1218580:CDS 45.0%
CATTCCTTATGCTGCATCAG+AGG - chr8_1:81225839-81225858 Msa1218580:CDS 45.0%
TCATCCTCTGATGCAGCATA+AGG + chr8_1:81225846-81225865 None:intergenic 45.0%
GACTAACTTCACTACAGGCA+AGG - chr8_1:81225887-81225906 Msa1218580:five_prime_UTR 45.0%
ACATGAACACCTCCAAAGGA+CGG + chr8_1:81225941-81225960 None:intergenic 45.0%
CTACACATGAACACCTCCAA+AGG + chr8_1:81225945-81225964 None:intergenic 45.0%
GATATGGTGAAGGCTTTCAG+TGG - chr8_1:81225982-81226001 Msa1218580:five_prime_UTR 45.0%
! GATTGGTTGGTACGCGTCAT+CGG + chr8_1:81224602-81224621 None:intergenic 50.0%
TTCTTGCTACCCTTGGTCTG+TGG - chr8_1:81224777-81224796 Msa1218580:CDS 50.0%
! CCTCTTTTTGCCACAGACCA+AGG + chr8_1:81224790-81224809 None:intergenic 50.0%
CCTTGGTCTGTGGCAAAAAG+AGG - chr8_1:81224787-81224806 Msa1218580:CDS 50.0%
GCTTCACATGCTCAAAGACG+AGG - chr8_1:81224856-81224875 Msa1218580:CDS 50.0%
CTGGAGGGACTATTATGCTC+AGG - chr8_1:81225077-81225096 Msa1218580:intron 50.0%
CTCGCCAATCAAAGTGAGTC+CGG - chr8_1:81225311-81225330 Msa1218580:intron 50.0%
TCGCCAATCAAAGTGAGTCC+GGG - chr8_1:81225312-81225331 Msa1218580:intron 50.0%
TGACTCCAATGTCCGTCCTT+TGG - chr8_1:81225926-81225945 Msa1218580:five_prime_UTR 50.0%
CGCAAGATGGGATATGGTGA+AGG - chr8_1:81225972-81225991 Msa1218580:five_prime_UTR 50.0%
! GATTGGTTGGTACGCGTCAT+CGG + chr8_1:81224602-81224621 None:intergenic 50.0%
TTCTTGCTACCCTTGGTCTG+TGG - chr8_1:81224777-81224796 Msa1218580:CDS 50.0%
! CCTCTTTTTGCCACAGACCA+AGG + chr8_1:81224790-81224809 None:intergenic 50.0%
CCTTGGTCTGTGGCAAAAAG+AGG - chr8_1:81224787-81224806 Msa1218580:CDS 50.0%
GCTTCACATGCTCAAAGACG+AGG - chr8_1:81224856-81224875 Msa1218580:CDS 50.0%
CTGGAGGGACTATTATGCTC+AGG - chr8_1:81225077-81225096 Msa1218580:intron 50.0%
CTCGCCAATCAAAGTGAGTC+CGG - chr8_1:81225311-81225330 Msa1218580:intron 50.0%
TCGCCAATCAAAGTGAGTCC+GGG - chr8_1:81225312-81225331 Msa1218580:intron 50.0%
TGACTCCAATGTCCGTCCTT+TGG - chr8_1:81225926-81225945 Msa1218580:five_prime_UTR 50.0%
CGCAAGATGGGATATGGTGA+AGG - chr8_1:81225972-81225991 Msa1218580:five_prime_UTR 50.0%
GGTGGATGCTGTAGTCTACC+TGG - chr8_1:81225704-81225723 Msa1218580:intron 55.0%
CTCCAATGTCCGTCCTTTGG+AGG - chr8_1:81225929-81225948 Msa1218580:five_prime_UTR 55.0%
CACCTCCAAAGGACGGACAT+TGG + chr8_1:81225934-81225953 None:intergenic 55.0%
GGTGGATGCTGTAGTCTACC+TGG - chr8_1:81225704-81225723 Msa1218580:intron 55.0%
CTCCAATGTCCGTCCTTTGG+AGG - chr8_1:81225929-81225948 Msa1218580:five_prime_UTR 55.0%
CACCTCCAAAGGACGGACAT+TGG + chr8_1:81225934-81225953 None:intergenic 55.0%
! TGGTTGGTACGCGTCATCGG+AGG + chr8_1:81224599-81224618 None:intergenic 60.0%
! TGGTTGGTACGCGTCATCGG+AGG + chr8_1:81224599-81224618 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 81224363 81226249 81224363 ID=Msa1218580;Name=Msa1218580
chr8_1 mRNA 81224363 81226249 81224363 ID=Msa1218580-mRNA-1;Parent=Msa1218580;Name=Msa1218580-mRNA-1;_AED=0.17;_eAED=0.17;_QI=386|1|1|1|1|1|3|224|193
chr8_1 exon 81224363 81224907 81224363 ID=Msa1218580-mRNA-1:exon:28738;Parent=Msa1218580-mRNA-1
chr8_1 exon 81225514 81225645 81225514 ID=Msa1218580-mRNA-1:exon:28737;Parent=Msa1218580-mRNA-1
chr8_1 exon 81225735 81226249 81225735 ID=Msa1218580-mRNA-1:exon:28736;Parent=Msa1218580-mRNA-1
chr8_1 five_prime_UTR 81225864 81226249 81225864 ID=Msa1218580-mRNA-1:five_prime_utr;Parent=Msa1218580-mRNA-1
chr8_1 CDS 81225735 81225863 81225735 ID=Msa1218580-mRNA-1:cds;Parent=Msa1218580-mRNA-1
chr8_1 CDS 81225514 81225645 81225514 ID=Msa1218580-mRNA-1:cds;Parent=Msa1218580-mRNA-1
chr8_1 CDS 81224587 81224907 81224587 ID=Msa1218580-mRNA-1:cds;Parent=Msa1218580-mRNA-1
chr8_1 three_prime_UTR 81224363 81224586 81224363 ID=Msa1218580-mRNA-1:three_prime_utr;Parent=Msa1218580-mRNA-1
Gene Sequence

>Msa1218580

ATGTTTCTTTTTGATTGGTTTTATGGAATTCTTGCTACCCTTGGTCTGTGGCAAAAAGAGGCCAAAATTTTATTTTTAGGGTTAGATAATGCTGGCAAAACAACTTTGCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCATCAACCAACACAACATCCAACTTCGGAAGAATTGAGTATTGGGAAGATAAAGTTTAAAGCTTTTGATTTGGGTGGTCACCAAATTGCTCGTAGAGTCTGGAGGGACTATTATGCTCAGGTGGATGCTGTAGTCTACCTGGTTGATGCATTTGACAAGGAAAGATTTCCAGAATCAAAGAAGGAGCTGGATGCTCTTCTTGCTGATGAGTCACTAGGAAATGTACCTTTCCTTATCTTAGGAAACAAGATTGACATTCCTTATGCTGCATCAGAGGATGAATTACGTTTTCATTTGGGATTGACTAACTTCACTACAGGCAAGGGAAAAATTAATCTTTATGACTCCAATGTCCGTCCTTTGGAGGTGTTCATGTGTAGTATTGTTCGCAAGATGGGATATGGTGAAGGCTTTCAGTGGCTTTCTCAGTATATTAAATAG

Protein sequence

>Msa1218580

MFLFDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWRDYYAQVDAVVYLVDAFDKERFPESKKELDALLADESLGNVPFLILGNKIDIPYAASEDELRFHLGLTNFTTGKGKINLYDSNVRPLEVFMCSIVRKMGYGEGFQWLSQYIK*