AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880810 MtrunA17_Chr4g0068171 97.409 193 5 0 1 193 1 193 6.68e-141 390
Msa0880810 MtrunA17_Chr2g0294701 94.301 193 11 0 1 193 1 193 6.01e-138 383
Msa0880810 MtrunA17_Chr7g0271761 90.155 193 19 0 1 193 1 193 2.02e-133 371
Msa0880810 MtrunA17_Chr4g0072861 35.227 176 102 1 18 193 15 178 9.68e-29 105
Msa0880810 MtrunA17_Chr5g0401761 32.768 177 103 2 18 192 15 177 8.54e-26 98.2
Msa0880810 MtrunA17_Chr5g0395631 30.366 191 113 2 3 193 8 178 5.92e-25 95.9
Msa0880810 MtrunA17_Chr8g0373271 34.503 171 101 1 22 192 18 177 7.46e-25 95.5
Msa0880810 MtrunA17_Chr4g0039591 30.366 191 113 2 3 193 8 178 1.02e-24 95.5
Msa0880810 MtrunA17_Chr5g0413451 32.203 177 104 2 18 192 15 177 1.91e-24 94.4
Msa0880810 MtrunA17_Chr5g0413441 32.203 177 104 2 18 192 15 177 1.91e-24 94.4
Msa0880810 MtrunA17_Chr7g0270301 32.203 177 104 2 18 192 15 177 1.97e-24 94.4
Msa0880810 MtrunA17_Chr6g0450081 32.203 177 104 2 18 192 15 177 1.99e-24 94.4
Msa0880810 MtrunA17_Chr1g0194261 32.203 177 104 2 18 192 15 177 2.19e-24 94.4
Msa0880810 MtrunA17_Chr5g0434561 35.526 152 96 2 1 151 1 151 2.18e-23 91.7
Msa0880810 MtrunA17_Chr1g0188111 34.503 171 100 2 19 189 16 174 7.94e-23 90.1
Msa0880810 MtrunA17_Chr4g0012371 31.818 176 101 3 22 193 2 162 9.01e-23 89.7
Msa0880810 MtrunA17_Chr2g0287721 37.267 161 83 4 3 151 1 155 9.85e-23 90.5
Msa0880810 MtrunA17_Chr5g0395641 28.866 194 114 4 3 193 8 180 3.20e-22 89.0
Msa0880810 MtrunA17_Chr5g0401071 30.928 194 120 3 1 193 1 181 4.66e-22 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880810 AT4G02080.1 91.192 193 17 0 1 193 1 193 9.51e-135 375
Msa0880810 AT3G62560.1 91.667 192 16 0 1 192 1 192 1.35e-133 372
Msa0880810 AT1G56330.1 91.667 192 16 0 1 192 1 192 8.46e-133 370
Msa0880810 AT1G09180.1 87.565 193 24 0 1 193 1 193 7.98e-127 355
Msa0880810 AT1G02620.1 86.486 111 15 0 83 193 12 122 4.57e-69 206
Msa0880810 AT2G24765.1 35.795 176 101 1 18 193 15 178 1.79e-28 105
Msa0880810 AT3G49870.1 32.990 194 116 3 1 193 1 181 3.32e-26 99.4
Msa0880810 AT5G67560.1 32.474 194 117 3 1 193 1 181 1.92e-25 97.4
Msa0880810 AT3G49870.2 34.118 170 99 2 25 193 5 162 4.79e-25 95.9
Msa0880810 AT2G18390.1 34.503 171 101 1 22 192 18 177 6.79e-25 96.3
Msa0880810 AT5G17060.2 30.890 191 112 2 3 193 8 178 7.78e-25 96.3
Msa0880810 AT5G17060.1 30.890 191 112 2 3 193 8 178 7.78e-25 96.3
Msa0880810 AT5G14670.2 32.203 177 104 2 18 192 15 177 2.63e-24 94.4
Msa0880810 AT5G14670.3 32.203 177 104 2 18 192 15 177 2.63e-24 94.4
Msa0880810 AT1G23490.1 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa0880810 AT1G70490.2 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa0880810 AT1G70490.7 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa0880810 AT1G70490.4 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa0880810 AT1G70490.3 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa0880810 AT1G70490.1 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa0880810 AT1G70490.6 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa0880810 AT1G70490.5 32.203 177 104 2 18 192 15 177 2.99e-24 94.4
Msa0880810 AT2G47170.2 32.203 177 104 2 18 192 15 177 3.09e-24 94.4
Msa0880810 AT2G47170.1 32.203 177 104 2 18 192 15 177 3.09e-24 94.4
Msa0880810 AT2G47170.3 32.203 177 104 2 18 192 15 177 3.09e-24 94.4
Msa0880810 AT3G62290.3 32.203 177 104 2 18 192 15 177 3.12e-24 94.4
Msa0880810 AT3G62290.1 32.203 177 104 2 18 192 15 177 3.12e-24 94.4
Msa0880810 AT3G62290.2 32.203 177 104 2 18 192 15 177 3.12e-24 94.4
Msa0880810 AT5G37680.1 36.601 153 95 2 1 152 1 152 3.18e-24 94.4
Msa0880810 AT1G10630.1 32.203 177 104 2 18 192 15 177 3.22e-24 94.4
Msa0880810 AT1G10630.2 32.203 177 104 2 18 192 15 177 3.22e-24 94.4
Msa0880810 AT5G14670.1 32.203 177 104 2 18 192 15 177 3.32e-24 94.4
Msa0880810 AT2G24765.2 42.478 113 65 0 18 130 15 127 3.48e-24 92.8
Msa0880810 AT3G03120.1 30.890 191 112 3 3 193 8 178 2.53e-23 92.4
Msa0880810 AT3G22950.1 33.908 174 103 3 19 192 16 177 8.90e-23 90.5
Msa0880810 AT3G22950.2 33.908 174 103 3 19 192 16 177 8.90e-23 90.5
Msa0880810 AT2G15310.1 31.073 177 110 1 16 192 13 177 3.34e-22 89.7
Msa0880810 AT3G49860.1 35.000 140 90 1 15 153 6 145 9.69e-22 87.8
Msa0880810 AT3G03120.2 32.824 131 80 1 3 133 8 130 7.81e-21 84.3
Msa0880810 AT5G52210.1 36.913 149 76 3 15 148 7 152 7.33e-20 83.6
Msa0880810 AT5G52210.2 36.913 149 76 3 15 148 7 152 7.33e-20 83.6
Msa0880810 AT5G37680.2 40.777 103 61 0 50 152 3 105 1.50e-19 80.9
Msa0880810 AT1G02430.2 31.206 141 89 4 18 151 15 154 3.36e-15 70.1
Msa0880810 AT1G02430.1 31.206 141 89 4 18 151 15 154 5.29e-15 70.1

Find 60 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGCTCCTTCTTTGATTC+TGG 0.179657 6_1:+27657902 None:intergenic
GCTTTCTCAGTATATTAAAT+AGG 0.199871 6_1:-27657651 Msa0880810:exon
TATACTTTGCTCATGTAAAT+TGG 0.251390 6_1:-27657552 Msa0880810:three_prime_UTR
CTTCGGAAGAATTGAGTATT+GGG 0.315137 6_1:-27658654 Msa0880810:CDS
AATGTACCTTTCCTTATCTT+AGG 0.333519 6_1:-27657851 Msa0880810:CDS
ATTGGATAATAATAGTTAAA+TGG 0.341144 6_1:-27657534 Msa0880810:three_prime_UTR
TCCAGACTCTACGAGCAATT+TGG 0.346671 6_1:+27658596 None:intergenic
TGACTCCAATGTCCGTCCTT+TGG 0.348016 6_1:-27657729 Msa0880810:CDS
TTTGACGTGACTGTGGTCTT+TGG 0.350821 6_1:-27659113 Msa0880810:five_prime_UTR
ACCAAATTGCTCGTAGAGTC+TGG 0.380274 6_1:-27658597 Msa0880810:CDS
TCCAGTTGTAGGGGTTTGAT+TGG 0.387214 6_1:+27659039 None:intergenic
GTTGTAGGGGTTTGATTGGT+TGG 0.389067 6_1:+27659043 None:intergenic
TATGGAATTCTTGCTACCCT+TGG 0.394725 6_1:-27658885 Msa0880810:CDS
AATTGCAGAATTAATAATAG+TGG 0.399953 6_1:-27657429 Msa0880810:three_prime_UTR
ACCAATCAAACCCCTACAAC+TGG 0.401710 6_1:-27659040 Msa0880810:five_prime_UTR
CTTTCTCAGTATATTAAATA+GGG 0.415038 6_1:-27657650 Msa0880810:exon
CAATCTTGTTTCCTAAGATA+AGG 0.427363 6_1:+27657840 None:intergenic
ATACTCAATTCTTCCGAAGT+TGG 0.431342 6_1:+27658658 None:intergenic
ATTCAGAAATTCCAGTTGTA+GGG 0.440614 6_1:+27659029 None:intergenic
ACTTCGGAAGAATTGAGTAT+TGG 0.450496 6_1:-27658655 Msa0880810:CDS
GATTCAGAAATTCCAGTTGT+AGG 0.456614 6_1:+27659028 None:intergenic
GATTGGTTGGTACGCGTCAT+CGG 0.459740 6_1:+27659056 None:intergenic
ATTGTTCGCAAGATGGGATA+TGG 0.464211 6_1:-27657689 Msa0880810:CDS
TGTCTTCAGCGTATATATAG+TGG 0.466437 6_1:+27659000 None:intergenic
TCATCCTCTGATGCAGCATA+AGG 0.468463 6_1:+27657812 None:intergenic
TGTAGTATTGTTCGCAAGAT+GGG 0.483741 6_1:-27657695 Msa0880810:CDS
CTCCAATGTCCGTCCTTTGG+AGG 0.487360 6_1:-27657726 Msa0880810:CDS
TCCGAAGTTGGATGTTGTGT+TGG 0.497799 6_1:+27658670 None:intergenic
TTACTTAAAAGAAATGGTAC+AGG 0.501012 6_1:+27659206 None:intergenic
TAGTTCTGAAACTTGCATGT+AGG 0.504331 6_1:-27657491 Msa0880810:three_prime_UTR
GGATTGACTAACTTCACTAC+AGG 0.520704 6_1:-27657773 Msa0880810:CDS
GTGTAGTATTGTTCGCAAGA+TGG 0.522465 6_1:-27657696 Msa0880810:CDS
TCCAGAATCAAAGAAGGAGC+TGG 0.545473 6_1:-27657903 Msa0880810:CDS
CTGGAGGGACTATTATGCTC+AGG 0.546159 6_1:-27658578 Msa0880810:intron
TAATAATTAGAGTAAATCTG+TGG 0.546406 6_1:-27659144 Msa0880810:five_prime_UTR
CATTCCTTATGCTGCATCAG+AGG 0.549318 6_1:-27657816 Msa0880810:CDS
AATAATTAGAGTAAATCTGT+GGG 0.550383 6_1:-27659143 Msa0880810:five_prime_UTR
GACTAACTTCACTACAGGCA+AGG 0.551563 6_1:-27657768 Msa0880810:CDS
AAGATTTCCAGAATCAAAGA+AGG 0.553734 6_1:-27657909 Msa0880810:CDS
CTTCTTGCTGATGAGTCACT+AGG 0.554172 6_1:-27657875 Msa0880810:CDS
CGCAAGATGGGATATGGTGA+AGG 0.562040 6_1:-27657683 Msa0880810:CDS
CACCTCCAAAGGACGGACAT+TGG 0.563163 6_1:+27657724 None:intergenic
ATACGCTGAAGACAAATACT+TGG 0.563987 6_1:-27658991 Msa0880810:five_prime_UTR
TTCTTGCTACCCTTGGTCTG+TGG 0.568404 6_1:-27658878 Msa0880810:CDS
GGTGGATGCTGTAGTCTACC+TGG 0.579563 6_1:-27657951 Msa0880810:CDS
TTCAGAAATTCCAGTTGTAG+GGG 0.582471 6_1:+27659030 None:intergenic
CCTTGTCAAATGCATCAACC+AGG 0.583815 6_1:+27657933 None:intergenic
TTGTTTCCTAAGATAAGGAA+AGG 0.590342 6_1:+27657845 None:intergenic
CCTGGTTGATGCATTTGACA+AGG 0.590610 6_1:-27657933 Msa0880810:CDS
ACTAACTTCACTACAGGCAA+GGG 0.591515 6_1:-27657767 Msa0880810:CDS
CTACACATGAACACCTCCAA+AGG 0.598493 6_1:+27657713 None:intergenic
ACCAACACAACATCCAACTT+CGG 0.598906 6_1:-27658671 Msa0880810:CDS
CTTCAGCGTATATATAGTGG+AGG 0.605705 6_1:+27659003 None:intergenic
GATATGGTGAAGGCTTTCAG+TGG 0.632785 6_1:-27657673 Msa0880810:CDS
ACATGAACACCTCCAAAGGA+CGG 0.637700 6_1:+27657717 None:intergenic
AATTGCTCGTAGAGTCTGGA+GGG 0.640603 6_1:-27658593 Msa0880810:CDS
GCTTCACATGCTCAAAGACG+AGG 0.649498 6_1:-27658799 Msa0880810:intron
TGGTTGGTACGCGTCATCGG+AGG 0.666989 6_1:+27659059 None:intergenic
TTCAGCGTATATATAGTGGA+GGG 0.675270 6_1:+27659004 None:intergenic
AAATTGCTCGTAGAGTCTGG+AGG 0.706522 6_1:-27658594 Msa0880810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTACTTAAAAGAAA+TGG + chr6_1:27657523-27657542 None:intergenic 10.0%
!!! AATTTTTTACTTAAAAGAAA+TGG + chr6_1:27657523-27657542 None:intergenic 10.0%
!!! ATAAAATGTTTCTTTTTGAT+TGG - chr6_1:27657809-27657828 Msa0880810:CDS 15.0%
!!! TAACCCTAAAAATAAAATTT+TGG + chr6_1:27657878-27657897 None:intergenic 15.0%
!!! ATGTTAATTGTAGATTTTTA+TGG - chr6_1:27658742-27658761 Msa0880810:intron 15.0%
!! ATTGGATAATAATAGTTAAA+TGG - chr6_1:27659186-27659205 Msa0880810:five_prime_UTR 15.0%
!!! ATAAAATGTTTCTTTTTGAT+TGG - chr6_1:27657809-27657828 Msa0880810:CDS 15.0%
!!! TAACCCTAAAAATAAAATTT+TGG + chr6_1:27657878-27657897 None:intergenic 15.0%
!!! ATGTTAATTGTAGATTTTTA+TGG - chr6_1:27658742-27658761 Msa0880810:intron 15.0%
!! ATTGGATAATAATAGTTAAA+TGG - chr6_1:27659186-27659205 Msa0880810:five_prime_UTR 15.0%
!!! TTCTCAAATTACATTTTGAA+GGG + chr6_1:27657462-27657481 None:intergenic 20.0%
!!! TTTCTCAAATTACATTTTGA+AGG + chr6_1:27657463-27657482 None:intergenic 20.0%
!! TAATAATTAGAGTAAATCTG+TGG - chr6_1:27657576-27657595 Msa0880810:three_prime_UTR 20.0%
!! AATAATTAGAGTAAATCTGT+GGG - chr6_1:27657577-27657596 Msa0880810:three_prime_UTR 20.0%
!!! AAAGAAACATTTTATTCAAC+CGG + chr6_1:27657804-27657823 None:intergenic 20.0%
!!! TTTCTTTTTGATTGGTTTTA+TGG - chr6_1:27657817-27657836 Msa0880810:CDS 20.0%
!!! AGGCCAAAATTTTATTTTTA+GGG - chr6_1:27657872-27657891 Msa0880810:CDS 20.0%
!!! AAAGTTTAAAGCTTTTGATT+TGG - chr6_1:27658094-27658113 Msa0880810:intron 20.0%
!!! AAGTTTAAAGCTTTTGATTT+GGG - chr6_1:27658095-27658114 Msa0880810:intron 20.0%
!! CTTTCTCAGTATATTAAATA+GGG - chr6_1:27659070-27659089 Msa0880810:five_prime_UTR 20.0%
!! AATTGCAGAATTAATAATAG+TGG - chr6_1:27659291-27659310 Msa0880810:five_prime_UTR 20.0%
!!! TTCTCAAATTACATTTTGAA+GGG + chr6_1:27657462-27657481 None:intergenic 20.0%
!!! TTTCTCAAATTACATTTTGA+AGG + chr6_1:27657463-27657482 None:intergenic 20.0%
!! TAATAATTAGAGTAAATCTG+TGG - chr6_1:27657576-27657595 Msa0880810:three_prime_UTR 20.0%
!! AATAATTAGAGTAAATCTGT+GGG - chr6_1:27657577-27657596 Msa0880810:three_prime_UTR 20.0%
!!! AAAGAAACATTTTATTCAAC+CGG + chr6_1:27657804-27657823 None:intergenic 20.0%
!!! TTTCTTTTTGATTGGTTTTA+TGG - chr6_1:27657817-27657836 Msa0880810:CDS 20.0%
!!! AGGCCAAAATTTTATTTTTA+GGG - chr6_1:27657872-27657891 Msa0880810:CDS 20.0%
!!! AAAGTTTAAAGCTTTTGATT+TGG - chr6_1:27658094-27658113 Msa0880810:intron 20.0%
!!! AAGTTTAAAGCTTTTGATTT+GGG - chr6_1:27658095-27658114 Msa0880810:intron 20.0%
!! CTTTCTCAGTATATTAAATA+GGG - chr6_1:27659070-27659089 Msa0880810:five_prime_UTR 20.0%
!! AATTGCAGAATTAATAATAG+TGG - chr6_1:27659291-27659310 Msa0880810:five_prime_UTR 20.0%
! TTACTTAAAAGAAATGGTAC+AGG + chr6_1:27657517-27657536 None:intergenic 25.0%
!!! GAGGCCAAAATTTTATTTTT+AGG - chr6_1:27657871-27657890 Msa0880810:CDS 25.0%
!! CAGGTAATTTCTTTTATGAA+TGG - chr6_1:27658161-27658180 Msa0880810:intron 25.0%
! TCTCAACCACATTTAAATTT+AGG - chr6_1:27658292-27658311 Msa0880810:intron 25.0%
! CTCAACCACATTTAAATTTA+GGG - chr6_1:27658293-27658312 Msa0880810:intron 25.0%
! TCAACCACATTTAAATTTAG+GGG - chr6_1:27658294-27658313 Msa0880810:intron 25.0%
! AGTGCTTTCAAAACAAATAT+GGG + chr6_1:27658415-27658434 None:intergenic 25.0%
! AAGTGCTTTCAAAACAAATA+TGG + chr6_1:27658416-27658435 None:intergenic 25.0%
! TAGTTTGAGAAAAATGAAAG+TGG - chr6_1:27658532-27658551 Msa0880810:intron 25.0%
! CAATGCATATGATTATGTTA+AGG + chr6_1:27658673-27658692 None:intergenic 25.0%
!! ATTGTAGATTTTTATGGTAC+AGG - chr6_1:27658748-27658767 Msa0880810:intron 25.0%
!! GATGAATTACGTTTTCATTT+GGG - chr6_1:27658926-27658945 Msa0880810:exon 25.0%
! GCTTTCTCAGTATATTAAAT+AGG - chr6_1:27659069-27659088 Msa0880810:five_prime_UTR 25.0%
! TATACTTTGCTCATGTAAAT+TGG - chr6_1:27659168-27659187 Msa0880810:five_prime_UTR 25.0%
! TTACTTAAAAGAAATGGTAC+AGG + chr6_1:27657517-27657536 None:intergenic 25.0%
!!! GAGGCCAAAATTTTATTTTT+AGG - chr6_1:27657871-27657890 Msa0880810:CDS 25.0%
!! CAGGTAATTTCTTTTATGAA+TGG - chr6_1:27658161-27658180 Msa0880810:intron 25.0%
! TCTCAACCACATTTAAATTT+AGG - chr6_1:27658292-27658311 Msa0880810:intron 25.0%
! CTCAACCACATTTAAATTTA+GGG - chr6_1:27658293-27658312 Msa0880810:intron 25.0%
! TCAACCACATTTAAATTTAG+GGG - chr6_1:27658294-27658313 Msa0880810:intron 25.0%
! AGTGCTTTCAAAACAAATAT+GGG + chr6_1:27658415-27658434 None:intergenic 25.0%
! AAGTGCTTTCAAAACAAATA+TGG + chr6_1:27658416-27658435 None:intergenic 25.0%
! TAGTTTGAGAAAAATGAAAG+TGG - chr6_1:27658532-27658551 Msa0880810:intron 25.0%
! CAATGCATATGATTATGTTA+AGG + chr6_1:27658673-27658692 None:intergenic 25.0%
!! ATTGTAGATTTTTATGGTAC+AGG - chr6_1:27658748-27658767 Msa0880810:intron 25.0%
!! GATGAATTACGTTTTCATTT+GGG - chr6_1:27658926-27658945 Msa0880810:exon 25.0%
! GCTTTCTCAGTATATTAAAT+AGG - chr6_1:27659069-27659088 Msa0880810:five_prime_UTR 25.0%
! TATACTTTGCTCATGTAAAT+TGG - chr6_1:27659168-27659187 Msa0880810:five_prime_UTR 25.0%
ATTCAGAAATTCCAGTTGTA+GGG + chr6_1:27657694-27657713 None:intergenic 30.0%
!!! GTTTTTGTTTCTGAAGTTTC+CGG - chr6_1:27657782-27657801 Msa0880810:CDS 30.0%
!!! TTTTTAGGGTTAGATAATGC+TGG - chr6_1:27657886-27657905 Msa0880810:CDS 30.0%
!!! TTTAAAGCTTTTGATTTGGG+TGG - chr6_1:27658098-27658117 Msa0880810:intron 30.0%
CAACCACATTTAAATTTAGG+GGG - chr6_1:27658295-27658314 Msa0880810:intron 30.0%
TTAAATTTAGGGGGTTCATA+AGG - chr6_1:27658304-27658323 Msa0880810:intron 30.0%
TTAAATGTAACCACATGTGT+TGG - chr6_1:27658555-27658574 Msa0880810:intron 30.0%
AAGATTTCCAGAATCAAAGA+AGG - chr6_1:27658811-27658830 Msa0880810:CDS 30.0%
AATGTACCTTTCCTTATCTT+AGG - chr6_1:27658869-27658888 Msa0880810:CDS 30.0%
TTGTTTCCTAAGATAAGGAA+AGG + chr6_1:27658878-27658897 None:intergenic 30.0%
! CAATCTTGTTTCCTAAGATA+AGG + chr6_1:27658883-27658902 None:intergenic 30.0%
! GGATGAATTACGTTTTCATT+TGG - chr6_1:27658925-27658944 Msa0880810:exon 30.0%
TCAAATTATAACCCTGACAA+AGG + chr6_1:27657430-27657449 None:intergenic 30.0%
ATTCAGAAATTCCAGTTGTA+GGG + chr6_1:27657694-27657713 None:intergenic 30.0%
!!! GTTTTTGTTTCTGAAGTTTC+CGG - chr6_1:27657782-27657801 Msa0880810:CDS 30.0%
!!! TTTTTAGGGTTAGATAATGC+TGG - chr6_1:27657886-27657905 Msa0880810:CDS 30.0%
!!! TTTAAAGCTTTTGATTTGGG+TGG - chr6_1:27658098-27658117 Msa0880810:intron 30.0%
CAACCACATTTAAATTTAGG+GGG - chr6_1:27658295-27658314 Msa0880810:intron 30.0%
TTAAATTTAGGGGGTTCATA+AGG - chr6_1:27658304-27658323 Msa0880810:intron 30.0%
TTAAATGTAACCACATGTGT+TGG - chr6_1:27658555-27658574 Msa0880810:intron 30.0%
AAGATTTCCAGAATCAAAGA+AGG - chr6_1:27658811-27658830 Msa0880810:CDS 30.0%
AATGTACCTTTCCTTATCTT+AGG - chr6_1:27658869-27658888 Msa0880810:CDS 30.0%
TTGTTTCCTAAGATAAGGAA+AGG + chr6_1:27658878-27658897 None:intergenic 30.0%
! CAATCTTGTTTCCTAAGATA+AGG + chr6_1:27658883-27658902 None:intergenic 30.0%
! GGATGAATTACGTTTTCATT+TGG - chr6_1:27658925-27658944 Msa0880810:exon 30.0%
!!! TTTGTTTTTTGACGTGACTG+TGG - chr6_1:27657600-27657619 Msa0880810:three_prime_UTR 35.0%
TTCAGAAATTCCAGTTGTAG+GGG + chr6_1:27657693-27657712 None:intergenic 35.0%
GATTCAGAAATTCCAGTTGT+AGG + chr6_1:27657695-27657714 None:intergenic 35.0%
! TTCAGCGTATATATAGTGGA+GGG + chr6_1:27657719-27657738 None:intergenic 35.0%
TGTCTTCAGCGTATATATAG+TGG + chr6_1:27657723-27657742 None:intergenic 35.0%
ATACGCTGAAGACAAATACT+TGG - chr6_1:27657729-27657748 Msa0880810:CDS 35.0%
ATACTCAATTCTTCCGAAGT+TGG + chr6_1:27658065-27658084 None:intergenic 35.0%
ACTTCGGAAGAATTGAGTAT+TGG - chr6_1:27658065-27658084 Msa0880810:intron 35.0%
CTTCGGAAGAATTGAGTATT+GGG - chr6_1:27658066-27658085 Msa0880810:intron 35.0%
GAACCCCCTAAATTTAAATG+TGG + chr6_1:27658301-27658320 None:intergenic 35.0%
!!! GTTTTGAAAGCACTTATGCT+TGG - chr6_1:27658421-27658440 Msa0880810:intron 35.0%
! GTAGATTTTTATGGTACAGG+TGG - chr6_1:27658751-27658770 Msa0880810:intron 35.0%
TGTAGTATTGTTCGCAAGAT+GGG - chr6_1:27659025-27659044 Msa0880810:five_prime_UTR 35.0%
!! TAGTTCTGAAACTTGCATGT+AGG - chr6_1:27659229-27659248 Msa0880810:five_prime_UTR 35.0%
!!! TTTGTTTTTTGACGTGACTG+TGG - chr6_1:27657600-27657619 Msa0880810:three_prime_UTR 35.0%
TTCAGAAATTCCAGTTGTAG+GGG + chr6_1:27657693-27657712 None:intergenic 35.0%
GATTCAGAAATTCCAGTTGT+AGG + chr6_1:27657695-27657714 None:intergenic 35.0%
! TTCAGCGTATATATAGTGGA+GGG + chr6_1:27657719-27657738 None:intergenic 35.0%
TGTCTTCAGCGTATATATAG+TGG + chr6_1:27657723-27657742 None:intergenic 35.0%
ATACGCTGAAGACAAATACT+TGG - chr6_1:27657729-27657748 Msa0880810:CDS 35.0%
ATACTCAATTCTTCCGAAGT+TGG + chr6_1:27658065-27658084 None:intergenic 35.0%
ACTTCGGAAGAATTGAGTAT+TGG - chr6_1:27658065-27658084 Msa0880810:intron 35.0%
CTTCGGAAGAATTGAGTATT+GGG - chr6_1:27658066-27658085 Msa0880810:intron 35.0%
GAACCCCCTAAATTTAAATG+TGG + chr6_1:27658301-27658320 None:intergenic 35.0%
!!! GTTTTGAAAGCACTTATGCT+TGG - chr6_1:27658421-27658440 Msa0880810:intron 35.0%
! GTAGATTTTTATGGTACAGG+TGG - chr6_1:27658751-27658770 Msa0880810:intron 35.0%
TGTAGTATTGTTCGCAAGAT+GGG - chr6_1:27659025-27659044 Msa0880810:five_prime_UTR 35.0%
!! TAGTTCTGAAACTTGCATGT+AGG - chr6_1:27659229-27659248 Msa0880810:five_prime_UTR 35.0%
CTTCAGCGTATATATAGTGG+AGG + chr6_1:27657720-27657739 None:intergenic 40.0%
TATGGAATTCTTGCTACCCT+TGG - chr6_1:27657835-27657854 Msa0880810:CDS 40.0%
ACCAACACAACATCCAACTT+CGG - chr6_1:27658049-27658068 Msa0880810:intron 40.0%
GTACACTGTCAGTGTTCTAT+AGG - chr6_1:27658458-27658477 Msa0880810:intron 40.0%
! CACATGTGTTGGTATCTTGT+CGG - chr6_1:27658566-27658585 Msa0880810:intron 40.0%
GGATTGACTAACTTCACTAC+AGG - chr6_1:27658947-27658966 Msa0880810:five_prime_UTR 40.0%
ACTAACTTCACTACAGGCAA+GGG - chr6_1:27658953-27658972 Msa0880810:five_prime_UTR 40.0%
GTGTAGTATTGTTCGCAAGA+TGG - chr6_1:27659024-27659043 Msa0880810:five_prime_UTR 40.0%
ATTGTTCGCAAGATGGGATA+TGG - chr6_1:27659031-27659050 Msa0880810:five_prime_UTR 40.0%
CTTCAGCGTATATATAGTGG+AGG + chr6_1:27657720-27657739 None:intergenic 40.0%
TATGGAATTCTTGCTACCCT+TGG - chr6_1:27657835-27657854 Msa0880810:CDS 40.0%
ACCAACACAACATCCAACTT+CGG - chr6_1:27658049-27658068 Msa0880810:intron 40.0%
GTACACTGTCAGTGTTCTAT+AGG - chr6_1:27658458-27658477 Msa0880810:intron 40.0%
! CACATGTGTTGGTATCTTGT+CGG - chr6_1:27658566-27658585 Msa0880810:intron 40.0%
GGATTGACTAACTTCACTAC+AGG - chr6_1:27658947-27658966 Msa0880810:five_prime_UTR 40.0%
ACTAACTTCACTACAGGCAA+GGG - chr6_1:27658953-27658972 Msa0880810:five_prime_UTR 40.0%
GTGTAGTATTGTTCGCAAGA+TGG - chr6_1:27659024-27659043 Msa0880810:five_prime_UTR 40.0%
ATTGTTCGCAAGATGGGATA+TGG - chr6_1:27659031-27659050 Msa0880810:five_prime_UTR 40.0%
TTTGACGTGACTGTGGTCTT+TGG - chr6_1:27657607-27657626 Msa0880810:three_prime_UTR 45.0%
GTTGTAGGGGTTTGATTGGT+TGG + chr6_1:27657680-27657699 None:intergenic 45.0%
ACCAATCAAACCCCTACAAC+TGG - chr6_1:27657680-27657699 Msa0880810:CDS 45.0%
TCCAGTTGTAGGGGTTTGAT+TGG + chr6_1:27657684-27657703 None:intergenic 45.0%
! CTCTTTTTGCCACAGACCAA+GGG + chr6_1:27657854-27657873 None:intergenic 45.0%
TCCGAAGTTGGATGTTGTGT+TGG + chr6_1:27658053-27658072 None:intergenic 45.0%
ACCAAATTGCTCGTAGAGTC+TGG - chr6_1:27658123-27658142 Msa0880810:intron 45.0%
TCCAGACTCTACGAGCAATT+TGG + chr6_1:27658127-27658146 None:intergenic 45.0%
AAATTGCTCGTAGAGTCTGG+AGG - chr6_1:27658126-27658145 Msa0880810:intron 45.0%
AATTGCTCGTAGAGTCTGGA+GGG - chr6_1:27658127-27658146 Msa0880810:intron 45.0%
TAACCCGGACTCACTTTGAT+TGG + chr6_1:27658383-27658402 None:intergenic 45.0%
AATCAAAGTGAGTCCGGGTT+AGG - chr6_1:27658382-27658401 Msa0880810:intron 45.0%
! TATGGGTTACTCTCCTAACC+CGG + chr6_1:27658398-27658417 None:intergenic 45.0%
TGCGTCAGTGATTCATAGCT+CGG + chr6_1:27658495-27658514 None:intergenic 45.0%
CGACAAGATACCAACACATG+TGG + chr6_1:27658568-27658587 None:intergenic 45.0%
TTGGTATCTTGTCGGTGTGT+TGG - chr6_1:27658574-27658593 Msa0880810:intron 45.0%
AGCGTGAACGTAATCATGTG+TGG - chr6_1:27658703-27658722 Msa0880810:intron 45.0%
GCGTGAACGTAATCATGTGT+GGG - chr6_1:27658704-27658723 Msa0880810:intron 45.0%
CCTTGTCAAATGCATCAACC+AGG + chr6_1:27658790-27658809 None:intergenic 45.0%
! CCTGGTTGATGCATTTGACA+AGG - chr6_1:27658787-27658806 Msa0880810:intron 45.0%
TCCAGAATCAAAGAAGGAGC+TGG - chr6_1:27658817-27658836 Msa0880810:CDS 45.0%
TCCAGCTCCTTCTTTGATTC+TGG + chr6_1:27658821-27658840 None:intergenic 45.0%
CTTCTTGCTGATGAGTCACT+AGG - chr6_1:27658845-27658864 Msa0880810:CDS 45.0%
CATTCCTTATGCTGCATCAG+AGG - chr6_1:27658904-27658923 Msa0880810:CDS 45.0%
TCATCCTCTGATGCAGCATA+AGG + chr6_1:27658911-27658930 None:intergenic 45.0%
GACTAACTTCACTACAGGCA+AGG - chr6_1:27658952-27658971 Msa0880810:five_prime_UTR 45.0%
ACATGAACACCTCCAAAGGA+CGG + chr6_1:27659006-27659025 None:intergenic 45.0%
CTACACATGAACACCTCCAA+AGG + chr6_1:27659010-27659029 None:intergenic 45.0%
GATATGGTGAAGGCTTTCAG+TGG - chr6_1:27659047-27659066 Msa0880810:five_prime_UTR 45.0%
TTTGACGTGACTGTGGTCTT+TGG - chr6_1:27657607-27657626 Msa0880810:three_prime_UTR 45.0%
GTTGTAGGGGTTTGATTGGT+TGG + chr6_1:27657680-27657699 None:intergenic 45.0%
ACCAATCAAACCCCTACAAC+TGG - chr6_1:27657680-27657699 Msa0880810:CDS 45.0%
TCCAGTTGTAGGGGTTTGAT+TGG + chr6_1:27657684-27657703 None:intergenic 45.0%
! CTCTTTTTGCCACAGACCAA+GGG + chr6_1:27657854-27657873 None:intergenic 45.0%
TCCGAAGTTGGATGTTGTGT+TGG + chr6_1:27658053-27658072 None:intergenic 45.0%
ACCAAATTGCTCGTAGAGTC+TGG - chr6_1:27658123-27658142 Msa0880810:intron 45.0%
TCCAGACTCTACGAGCAATT+TGG + chr6_1:27658127-27658146 None:intergenic 45.0%
AAATTGCTCGTAGAGTCTGG+AGG - chr6_1:27658126-27658145 Msa0880810:intron 45.0%
AATTGCTCGTAGAGTCTGGA+GGG - chr6_1:27658127-27658146 Msa0880810:intron 45.0%
TAACCCGGACTCACTTTGAT+TGG + chr6_1:27658383-27658402 None:intergenic 45.0%
AATCAAAGTGAGTCCGGGTT+AGG - chr6_1:27658382-27658401 Msa0880810:intron 45.0%
! TATGGGTTACTCTCCTAACC+CGG + chr6_1:27658398-27658417 None:intergenic 45.0%
TGCGTCAGTGATTCATAGCT+CGG + chr6_1:27658495-27658514 None:intergenic 45.0%
CGACAAGATACCAACACATG+TGG + chr6_1:27658568-27658587 None:intergenic 45.0%
TTGGTATCTTGTCGGTGTGT+TGG - chr6_1:27658574-27658593 Msa0880810:intron 45.0%
AGCGTGAACGTAATCATGTG+TGG - chr6_1:27658703-27658722 Msa0880810:intron 45.0%
GCGTGAACGTAATCATGTGT+GGG - chr6_1:27658704-27658723 Msa0880810:intron 45.0%
CCTTGTCAAATGCATCAACC+AGG + chr6_1:27658790-27658809 None:intergenic 45.0%
! CCTGGTTGATGCATTTGACA+AGG - chr6_1:27658787-27658806 Msa0880810:intron 45.0%
TCCAGAATCAAAGAAGGAGC+TGG - chr6_1:27658817-27658836 Msa0880810:CDS 45.0%
TCCAGCTCCTTCTTTGATTC+TGG + chr6_1:27658821-27658840 None:intergenic 45.0%
CTTCTTGCTGATGAGTCACT+AGG - chr6_1:27658845-27658864 Msa0880810:CDS 45.0%
CATTCCTTATGCTGCATCAG+AGG - chr6_1:27658904-27658923 Msa0880810:CDS 45.0%
TCATCCTCTGATGCAGCATA+AGG + chr6_1:27658911-27658930 None:intergenic 45.0%
GACTAACTTCACTACAGGCA+AGG - chr6_1:27658952-27658971 Msa0880810:five_prime_UTR 45.0%
ACATGAACACCTCCAAAGGA+CGG + chr6_1:27659006-27659025 None:intergenic 45.0%
CTACACATGAACACCTCCAA+AGG + chr6_1:27659010-27659029 None:intergenic 45.0%
GATATGGTGAAGGCTTTCAG+TGG - chr6_1:27659047-27659066 Msa0880810:five_prime_UTR 45.0%
! GATTGGTTGGTACGCGTCAT+CGG + chr6_1:27657667-27657686 None:intergenic 50.0%
TTCTTGCTACCCTTGGTCTG+TGG - chr6_1:27657842-27657861 Msa0880810:CDS 50.0%
! CCTCTTTTTGCCACAGACCA+AGG + chr6_1:27657855-27657874 None:intergenic 50.0%
CCTTGGTCTGTGGCAAAAAG+AGG - chr6_1:27657852-27657871 Msa0880810:CDS 50.0%
GCTTCACATGCTCAAAGACG+AGG - chr6_1:27657921-27657940 Msa0880810:CDS 50.0%
CTGGAGGGACTATTATGCTC+AGG - chr6_1:27658142-27658161 Msa0880810:intron 50.0%
CTCGCCAATCAAAGTGAGTC+CGG - chr6_1:27658376-27658395 Msa0880810:intron 50.0%
TCGCCAATCAAAGTGAGTCC+GGG - chr6_1:27658377-27658396 Msa0880810:intron 50.0%
TGACTCCAATGTCCGTCCTT+TGG - chr6_1:27658991-27659010 Msa0880810:five_prime_UTR 50.0%
CGCAAGATGGGATATGGTGA+AGG - chr6_1:27659037-27659056 Msa0880810:five_prime_UTR 50.0%
! GATTGGTTGGTACGCGTCAT+CGG + chr6_1:27657667-27657686 None:intergenic 50.0%
TTCTTGCTACCCTTGGTCTG+TGG - chr6_1:27657842-27657861 Msa0880810:CDS 50.0%
! CCTCTTTTTGCCACAGACCA+AGG + chr6_1:27657855-27657874 None:intergenic 50.0%
CCTTGGTCTGTGGCAAAAAG+AGG - chr6_1:27657852-27657871 Msa0880810:CDS 50.0%
GCTTCACATGCTCAAAGACG+AGG - chr6_1:27657921-27657940 Msa0880810:CDS 50.0%
CTGGAGGGACTATTATGCTC+AGG - chr6_1:27658142-27658161 Msa0880810:intron 50.0%
CTCGCCAATCAAAGTGAGTC+CGG - chr6_1:27658376-27658395 Msa0880810:intron 50.0%
TCGCCAATCAAAGTGAGTCC+GGG - chr6_1:27658377-27658396 Msa0880810:intron 50.0%
TGACTCCAATGTCCGTCCTT+TGG - chr6_1:27658991-27659010 Msa0880810:five_prime_UTR 50.0%
CGCAAGATGGGATATGGTGA+AGG - chr6_1:27659037-27659056 Msa0880810:five_prime_UTR 50.0%
GGTGGATGCTGTAGTCTACC+TGG - chr6_1:27658769-27658788 Msa0880810:intron 55.0%
CTCCAATGTCCGTCCTTTGG+AGG - chr6_1:27658994-27659013 Msa0880810:five_prime_UTR 55.0%
CACCTCCAAAGGACGGACAT+TGG + chr6_1:27658999-27659018 None:intergenic 55.0%
GGTGGATGCTGTAGTCTACC+TGG - chr6_1:27658769-27658788 Msa0880810:intron 55.0%
CTCCAATGTCCGTCCTTTGG+AGG - chr6_1:27658994-27659013 Msa0880810:five_prime_UTR 55.0%
CACCTCCAAAGGACGGACAT+TGG + chr6_1:27658999-27659018 None:intergenic 55.0%
! TGGTTGGTACGCGTCATCGG+AGG + chr6_1:27657664-27657683 None:intergenic 60.0%
! TGGTTGGTACGCGTCATCGG+AGG + chr6_1:27657664-27657683 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 27657428 27659314 27657428 ID=Msa0880810;Name=Msa0880810
chr6_1 mRNA 27657428 27659314 27657428 ID=Msa0880810-mRNA-1;Parent=Msa0880810;Name=Msa0880810-mRNA-1;_AED=0.17;_eAED=0.17;_QI=386|1|1|1|1|1|3|224|193
chr6_1 exon 27657428 27657972 27657428 ID=Msa0880810-mRNA-1:exon:6835;Parent=Msa0880810-mRNA-1
chr6_1 exon 27658579 27658710 27658579 ID=Msa0880810-mRNA-1:exon:6834;Parent=Msa0880810-mRNA-1
chr6_1 exon 27658800 27659314 27658800 ID=Msa0880810-mRNA-1:exon:6833;Parent=Msa0880810-mRNA-1
chr6_1 five_prime_UTR 27658929 27659314 27658929 ID=Msa0880810-mRNA-1:five_prime_utr;Parent=Msa0880810-mRNA-1
chr6_1 CDS 27658800 27658928 27658800 ID=Msa0880810-mRNA-1:cds;Parent=Msa0880810-mRNA-1
chr6_1 CDS 27658579 27658710 27658579 ID=Msa0880810-mRNA-1:cds;Parent=Msa0880810-mRNA-1
chr6_1 CDS 27657652 27657972 27657652 ID=Msa0880810-mRNA-1:cds;Parent=Msa0880810-mRNA-1
chr6_1 three_prime_UTR 27657428 27657651 27657428 ID=Msa0880810-mRNA-1:three_prime_utr;Parent=Msa0880810-mRNA-1
Gene Sequence

>Msa0880810

ATGTTTCTTTTTGATTGGTTTTATGGAATTCTTGCTACCCTTGGTCTGTGGCAAAAAGAGGCCAAAATTTTATTTTTAGGGTTAGATAATGCTGGCAAAACAACTTTGCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCATCAACCAACACAACATCCAACTTCGGAAGAATTGAGTATTGGGAAGATAAAGTTTAAAGCTTTTGATTTGGGTGGTCACCAAATTGCTCGTAGAGTCTGGAGGGACTATTATGCTCAGGTGGATGCTGTAGTCTACCTGGTTGATGCATTTGACAAGGAAAGATTTCCAGAATCAAAGAAGGAGCTGGATGCTCTTCTTGCTGATGAGTCACTAGGAAATGTACCTTTCCTTATCTTAGGAAACAAGATTGACATTCCTTATGCTGCATCAGAGGATGAATTACGTTTTCATTTGGGATTGACTAACTTCACTACAGGCAAGGGAAAAATTAATCTTTATGACTCCAATGTCCGTCCTTTGGAGGTGTTCATGTGTAGTATTGTTCGCAAGATGGGATATGGTGAAGGCTTTCAGTGGCTTTCTCAGTATATTAAATAG

Protein sequence

>Msa0880810

MFLFDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWRDYYAQVDAVVYLVDAFDKERFPESKKELDALLADESLGNVPFLILGNKIDIPYAASEDELRFHLGLTNFTTGKGKINLYDSNVRPLEVFMCSIVRKMGYGEGFQWLSQYIK*