Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019530 | Msa0157810 | 0.800977 | 1.118933e-48 | -8.615850e-47 |
| Msa0145250 | Msa0157810 | 0.816699 | 4.833619e-52 | -8.615850e-47 |
| Msa0157810 | Msa0353190 | 0.803713 | 3.057432e-49 | -8.615850e-47 |
| Msa0157810 | Msa0456200 | 0.809788 | 1.591436e-50 | -8.615850e-47 |
| Msa0157810 | Msa0627410 | 0.802407 | 5.691938e-49 | -8.615850e-47 |
| Msa0157810 | Msa0885290 | 0.805288 | 1.434820e-49 | -8.615850e-47 |
| Msa0157810 | Msa0909120 | 0.810314 | 1.225892e-50 | -8.615850e-47 |
| Msa0157810 | Msa0965750 | 0.825384 | 4.826194e-54 | -8.615850e-47 |
| Msa0157810 | Msa1049020 | 0.811499 | 6.791792e-51 | -8.615850e-47 |
| Msa0157810 | Msa1160280 | 0.800510 | 1.393023e-48 | -8.615850e-47 |
| Msa0157810 | Msa1276040 | 0.809405 | 1.923406e-50 | -8.615850e-47 |
| Msa0157810 | Msa1283860 | 0.800407 | 1.462200e-48 | -8.615850e-47 |
| Msa0157810 | Msa1314280 | 0.813028 | 3.148981e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGTCTGAAGAGACAATA+AGG | 0.267225 | 1_4:+25962570 | Msa0157810:CDS |
| AAGGTTTCAAGATTGGTTTC+AGG | 0.274698 | 1_4:-25963311 | Msa0157790:intron |
| AGGCTTCTCACCTAGTAAAT+AGG | 0.283561 | 1_4:-25962960 | Msa0157790:intron |
| ATTAGAATCTCAAGCACTTT+TGG | 0.286448 | 1_4:-25963797 | Msa0157790:intron |
| TCAAACTGACCTTGTATTAG+AGG | 0.303763 | 1_4:+25962904 | Msa0157810:CDS |
| ACAAGGTCAGTTTGAGGTTT+GGG | 0.307981 | 1_4:-25962896 | Msa0157790:intron |
| ATACTTTATCTTCATGTTAG+TGG | 0.322601 | 1_4:-25962681 | Msa0157790:intron |
| CATGTTAGTGGCCAAGATCT+TGG | 0.332232 | 1_4:-25962669 | Msa0157790:intron |
| AATATCAAAGGTTTCAAGAT+TGG | 0.351414 | 1_4:-25963318 | Msa0157790:intron |
| ATGAAGATAAAGTATGAATA+TGG | 0.362194 | 1_4:+25962689 | Msa0157810:CDS |
| TCAGTAATGATATTTGCTTC+TGG | 0.371620 | 1_4:-25962731 | Msa0157790:intron |
| AGAGTCTGAAGAGACAATAA+GGG | 0.371680 | 1_4:+25962571 | Msa0157810:CDS |
| GGCCAGAGAGTTGGTTGTTA+AGG | 0.378974 | 1_4:+25962607 | Msa0157810:CDS |
| TACAAGGTCAGTTTGAGGTT+TGG | 0.388326 | 1_4:-25962897 | Msa0157790:intron |
| GAAGTATCAGAAGCTCCTTC+TGG | 0.404234 | 1_4:+25963428 | Msa0157810:CDS |
| CCTCTTCAAACCTATTTACT+AGG | 0.405112 | 1_4:+25962950 | Msa0157810:CDS |
| AAGGTGACACATGAGATAAA+AGG | 0.406825 | 1_4:+25962626 | Msa0157810:CDS |
| AGCCTCTGATGATAACAATA+TGG | 0.410296 | 1_4:+25963400 | Msa0157810:CDS |
| AGAGACAATAAGGGGAAAAC+AGG | 0.442995 | 1_4:+25962580 | Msa0157810:CDS |
| ATAAGGCTGCACAAAGAACT+TGG | 0.451226 | 1_4:-25963846 | Msa0157790:intron |
| GTGCTTGAGATTCTAATGTC+TGG | 0.451503 | 1_4:+25963803 | Msa0157810:CDS |
| AGAAGAGAGTTCCAAGATCT+TGG | 0.464162 | 1_4:+25962658 | Msa0157810:CDS |
| ATGAAGAGGGGCAACTAGAA+AGG | 0.468905 | 1_4:-25963279 | Msa0157790:intron |
| CACCTTAACAACCAACTCTC+TGG | 0.469552 | 1_4:-25962609 | Msa0157790:intron |
| TCAAGAGAATCTAAGTGTAC+AGG | 0.487505 | 1_4:-25962791 | Msa0157790:intron |
| AGGTGACACATGAGATAAAA+GGG | 0.493930 | 1_4:+25962627 | Msa0157810:CDS |
| TGAAACCCAACTAGAAAACT+TGG | 0.496808 | 1_4:+25963364 | Msa0157810:CDS |
| TGACCTTGTATTAGAGGTTG+AGG | 0.499095 | 1_4:+25962910 | Msa0157810:CDS |
| TCTAATACAAGGTCAGTTTG+AGG | 0.522052 | 1_4:-25962902 | Msa0157790:intron |
| TTTGTATATACTGAGCTAAG+TGG | 0.524300 | 1_4:-25962842 | Msa0157790:intron |
| AGAATCTAAGTGTACAGGGT+TGG | 0.536350 | 1_4:-25962786 | Msa0157790:intron |
| CAGGTTTAGCAAAATGAAGA+GGG | 0.536422 | 1_4:-25963292 | Msa0157790:intron |
| CTTCCTCAACCTCTAATACA+AGG | 0.536998 | 1_4:-25962913 | Msa0157790:intron |
| TTCATACATGATAATATCAA+AGG | 0.547860 | 1_4:-25963330 | Msa0157790:intron |
| TGAGGTTTGGGTGATAGTGA+TGG | 0.548869 | 1_4:-25962884 | Msa0157790:intron |
| TATATACTGAGCTAAGTGGT+TGG | 0.549239 | 1_4:-25962838 | Msa0157790:intron |
| CAAGAGAATCTAAGTGTACA+GGG | 0.550877 | 1_4:-25962790 | Msa0157790:intron |
| TGAAGAGGGGCAACTAGAAA+GGG | 0.558778 | 1_4:-25963278 | Msa0157790:intron |
| ACAGGTTGAGGCCAGAGAGT+TGG | 0.561593 | 1_4:+25962598 | Msa0157810:CDS |
| TGATGATAACAATATGGCCA+TGG | 0.579306 | 1_4:+25963406 | Msa0157810:CDS |
| GGCCATATTGTTATCATCAG+AGG | 0.583747 | 1_4:-25963402 | Msa0157790:intron |
| TCTAAGTGTACAGGGTTGGA+AGG | 0.586412 | 1_4:-25962782 | Msa0157790:intron |
| AGGAGCTTCTGATACTTCCA+TGG | 0.589203 | 1_4:-25963423 | Msa0157790:intron |
| AATAAGGGGAAAACAGGTTG+AGG | 0.594548 | 1_4:+25962586 | Msa0157810:CDS |
| TCAGGTTTAGCAAAATGAAG+AGG | 0.594774 | 1_4:-25963293 | Msa0157790:intron |
| CCTAGTAAATAGGTTTGAAG+AGG | 0.600815 | 1_4:-25962950 | Msa0157790:intron |
| GAGGGGCAACTAGAAAGGGT+TGG | 0.609409 | 1_4:-25963274 | Msa0157790:intron |
| GAGTCTGAAGAGACAATAAG+GGG | 0.614243 | 1_4:+25962572 | Msa0157810:CDS |
| GGTTGGTTATCTGTAGGTGA+TGG | 0.625186 | 1_4:-25962821 | Msa0157790:intron |
| AAGTATCAACTTTCTTACTG+AGG | 0.629113 | 1_4:-25962525 | Msa0157790:intron |
| AGCTCCTTCTGGTAGTAACA+TGG | 0.629434 | 1_4:+25963439 | Msa0157810:CDS |
| ATGGTACTTGAGAAGCTGCA+AGG | 0.631714 | 1_4:+25962708 | Msa0157810:intron |
| AGGTTTAGCAAAATGAAGAG+GGG | 0.636551 | 1_4:-25963291 | Msa0157790:intron |
| CTAAGTGGTTGGTTATCTGT+AGG | 0.649418 | 1_4:-25962827 | Msa0157790:intron |
| ATAACCATGTTACTACCAGA+AGG | 0.650467 | 1_4:-25963443 | Msa0157790:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTCAAAAAAAACATAAAG+AGG | + | chr1_4:25962544-25962563 | Msa0157810:CDS | 20.0% |
| !! | ATGAAGATAAAGTATGAATA+TGG | + | chr1_4:25962689-25962708 | Msa0157810:CDS | 20.0% |
| !! | TTCATACATGATAATATCAA+AGG | - | chr1_4:25963333-25963352 | Msa0157790:intron | 20.0% |
| !! | ACTTCAAAAAAAACATAAAG+AGG | + | chr1_4:25962544-25962563 | Msa0157810:CDS | 20.0% |
| !! | ATGAAGATAAAGTATGAATA+TGG | + | chr1_4:25962689-25962708 | Msa0157810:CDS | 20.0% |
| !! | TTCATACATGATAATATCAA+AGG | - | chr1_4:25963333-25963352 | Msa0157790:intron | 20.0% |
| ! | ATACTTTATCTTCATGTTAG+TGG | - | chr1_4:25962684-25962703 | Msa0157790:intron | 25.0% |
| ! | ATAGAACTCTTAAGTCAAAT+TGG | - | chr1_4:25963066-25963085 | Msa0157790:intron | 25.0% |
| !! | TTTGATGTTTGTTAGTGTAT+GGG | - | chr1_4:25963150-25963169 | Msa0157790:intron | 25.0% |
| !!! | TTTTGATGTTTGTTAGTGTA+TGG | - | chr1_4:25963151-25963170 | Msa0157790:intron | 25.0% |
| ! | AATATCAAAGGTTTCAAGAT+TGG | - | chr1_4:25963321-25963340 | Msa0157790:intron | 25.0% |
| ! | AATGAATCAAGTTATACATC+TGG | + | chr1_4:25963598-25963617 | Msa0157810:intron | 25.0% |
| !!! | ATTTTGATCACAATCTGATA+AGG | - | chr1_4:25963866-25963885 | Msa0157790:intron | 25.0% |
| ! | ATACTTTATCTTCATGTTAG+TGG | - | chr1_4:25962684-25962703 | Msa0157790:intron | 25.0% |
| ! | ATAGAACTCTTAAGTCAAAT+TGG | - | chr1_4:25963066-25963085 | Msa0157790:intron | 25.0% |
| !! | TTTGATGTTTGTTAGTGTAT+GGG | - | chr1_4:25963150-25963169 | Msa0157790:intron | 25.0% |
| !!! | TTTTGATGTTTGTTAGTGTA+TGG | - | chr1_4:25963151-25963170 | Msa0157790:intron | 25.0% |
| ! | AATATCAAAGGTTTCAAGAT+TGG | - | chr1_4:25963321-25963340 | Msa0157790:intron | 25.0% |
| ! | AATGAATCAAGTTATACATC+TGG | + | chr1_4:25963598-25963617 | Msa0157810:intron | 25.0% |
| !!! | ATTTTGATCACAATCTGATA+AGG | - | chr1_4:25963866-25963885 | Msa0157790:intron | 25.0% |
| AAGTATCAACTTTCTTACTG+AGG | - | chr1_4:25962528-25962547 | Msa0157790:intron | 30.0% | |
| TCAGTAATGATATTTGCTTC+TGG | - | chr1_4:25962734-25962753 | Msa0157790:intron | 30.0% | |
| TTTGTATATACTGAGCTAAG+TGG | - | chr1_4:25962845-25962864 | Msa0157790:intron | 30.0% | |
| TTGTTCTTCTTATGTAAGGT+TGG | - | chr1_4:25963005-25963024 | Msa0157790:intron | 30.0% | |
| TTAAGAGTTCTATCAGAAGT+TGG | + | chr1_4:25963073-25963092 | Msa0157810:intron | 30.0% | |
| ! | TTGATGTTTGTTAGTGTATG+GGG | - | chr1_4:25963149-25963168 | Msa0157790:intron | 30.0% |
| !! | TGTTTGTTGTTGTTGTTGTT+TGG | - | chr1_4:25963215-25963234 | Msa0157790:intron | 30.0% |
| GTTGTGAAATAGAAGATGAA+GGG | - | chr1_4:25963481-25963500 | Msa0157790:intron | 30.0% | |
| ! | AACTATCTTTGATAACCTTG+AGG | + | chr1_4:25963562-25963581 | Msa0157810:intron | 30.0% |
| TGGTAAACTACTTAGACAAA+TGG | + | chr1_4:25963618-25963637 | Msa0157810:intron | 30.0% | |
| ! | ATTAGAATCTCAAGCACTTT+TGG | - | chr1_4:25963800-25963819 | Msa0157790:intron | 30.0% |
| AAGTATCAACTTTCTTACTG+AGG | - | chr1_4:25962528-25962547 | Msa0157790:intron | 30.0% | |
| TCAGTAATGATATTTGCTTC+TGG | - | chr1_4:25962734-25962753 | Msa0157790:intron | 30.0% | |
| TTTGTATATACTGAGCTAAG+TGG | - | chr1_4:25962845-25962864 | Msa0157790:intron | 30.0% | |
| TTGTTCTTCTTATGTAAGGT+TGG | - | chr1_4:25963005-25963024 | Msa0157790:intron | 30.0% | |
| TTAAGAGTTCTATCAGAAGT+TGG | + | chr1_4:25963073-25963092 | Msa0157810:intron | 30.0% | |
| ! | TTGATGTTTGTTAGTGTATG+GGG | - | chr1_4:25963149-25963168 | Msa0157790:intron | 30.0% |
| !! | TGTTTGTTGTTGTTGTTGTT+TGG | - | chr1_4:25963215-25963234 | Msa0157790:intron | 30.0% |
| GTTGTGAAATAGAAGATGAA+GGG | - | chr1_4:25963481-25963500 | Msa0157790:intron | 30.0% | |
| ! | AACTATCTTTGATAACCTTG+AGG | + | chr1_4:25963562-25963581 | Msa0157810:intron | 30.0% |
| TGGTAAACTACTTAGACAAA+TGG | + | chr1_4:25963618-25963637 | Msa0157810:intron | 30.0% | |
| ! | ATTAGAATCTCAAGCACTTT+TGG | - | chr1_4:25963800-25963819 | Msa0157790:intron | 30.0% |
| AAGAGTCTGAAGAGACAATA+AGG | + | chr1_4:25962570-25962589 | Msa0157810:CDS | 35.0% | |
| AGAGTCTGAAGAGACAATAA+GGG | + | chr1_4:25962571-25962590 | Msa0157810:CDS | 35.0% | |
| AAGGTGACACATGAGATAAA+AGG | + | chr1_4:25962626-25962645 | Msa0157810:CDS | 35.0% | |
| AGGTGACACATGAGATAAAA+GGG | + | chr1_4:25962627-25962646 | Msa0157810:CDS | 35.0% | |
| CAAGAGAATCTAAGTGTACA+GGG | - | chr1_4:25962793-25962812 | Msa0157790:intron | 35.0% | |
| TCAAGAGAATCTAAGTGTAC+AGG | - | chr1_4:25962794-25962813 | Msa0157790:intron | 35.0% | |
| TATATACTGAGCTAAGTGGT+TGG | - | chr1_4:25962841-25962860 | Msa0157790:intron | 35.0% | |
| TCTAATACAAGGTCAGTTTG+AGG | - | chr1_4:25962905-25962924 | Msa0157790:intron | 35.0% | |
| TCAAACTGACCTTGTATTAG+AGG | + | chr1_4:25962904-25962923 | Msa0157810:CDS | 35.0% | |
| CCTAGTAAATAGGTTTGAAG+AGG | - | chr1_4:25962953-25962972 | Msa0157790:intron | 35.0% | |
| CCTCTTCAAACCTATTTACT+AGG | + | chr1_4:25962950-25962969 | Msa0157810:CDS | 35.0% | |
| !! | ATGTAAGGTTGGTAATGCTA+GGG | - | chr1_4:25962994-25963013 | Msa0157790:intron | 35.0% |
| !! | TATGTAAGGTTGGTAATGCT+AGG | - | chr1_4:25962995-25963014 | Msa0157790:intron | 35.0% |
| ! | CAGCTTGTTCTTCTTATGTA+AGG | - | chr1_4:25963009-25963028 | Msa0157790:intron | 35.0% |
| ATAAGAAGAACAAGCTGAGT+TGG | + | chr1_4:25963012-25963031 | Msa0157810:intron | 35.0% | |
| !! | ATAGGTGGTTGATAAAAGAG+GGG | - | chr1_4:25963104-25963123 | Msa0157790:intron | 35.0% |
| !! | CATAGGTGGTTGATAAAAGA+GGG | - | chr1_4:25963105-25963124 | Msa0157790:intron | 35.0% |
| !! | ACATAGGTGGTTGATAAAAG+AGG | - | chr1_4:25963106-25963125 | Msa0157790:intron | 35.0% |
| !! | AACAACCTCTGAGACAATAA+TGG | + | chr1_4:25963170-25963189 | Msa0157810:intron | 35.0% |
| AACTTCCATTATTGTCTCAG+AGG | - | chr1_4:25963178-25963197 | Msa0157790:intron | 35.0% | |
| AGGTTTAGCAAAATGAAGAG+GGG | - | chr1_4:25963294-25963313 | Msa0157790:intron | 35.0% | |
| CAGGTTTAGCAAAATGAAGA+GGG | - | chr1_4:25963295-25963314 | Msa0157790:intron | 35.0% | |
| TCAGGTTTAGCAAAATGAAG+AGG | - | chr1_4:25963296-25963315 | Msa0157790:intron | 35.0% | |
| !! | AAGGTTTCAAGATTGGTTTC+AGG | - | chr1_4:25963314-25963333 | Msa0157790:intron | 35.0% |
| TGAAACCCAACTAGAAAACT+TGG | + | chr1_4:25963364-25963383 | Msa0157810:CDS | 35.0% | |
| !!! | TTGAGCCAAGTTTTCTAGTT+GGG | - | chr1_4:25963372-25963391 | Msa0157790:intron | 35.0% |
| !! | TTTGAGCCAAGTTTTCTAGT+TGG | - | chr1_4:25963373-25963392 | Msa0157790:intron | 35.0% |
| AGCCTCTGATGATAACAATA+TGG | + | chr1_4:25963400-25963419 | Msa0157810:CDS | 35.0% | |
| TGATGATAACAATATGGCCA+TGG | + | chr1_4:25963406-25963425 | Msa0157810:CDS | 35.0% | |
| ATAACCATGTTACTACCAGA+AGG | - | chr1_4:25963446-25963465 | Msa0157790:intron | 35.0% | |
| GGTTGTGAAATAGAAGATGA+AGG | - | chr1_4:25963482-25963501 | Msa0157790:intron | 35.0% | |
| TAACACTAGATTGGAGGTTA+AGG | - | chr1_4:25963528-25963547 | Msa0157790:intron | 35.0% | |
| !! | AGCTTTTAGTTGAGTTGCAA+TGG | - | chr1_4:25963696-25963715 | Msa0157790:intron | 35.0% |
| TGAAGTAGTCATGAAGAGTA+TGG | + | chr1_4:25963730-25963749 | Msa0157810:intron | 35.0% | |
| AAGAGTCTGAAGAGACAATA+AGG | + | chr1_4:25962570-25962589 | Msa0157810:CDS | 35.0% | |
| AGAGTCTGAAGAGACAATAA+GGG | + | chr1_4:25962571-25962590 | Msa0157810:CDS | 35.0% | |
| AAGGTGACACATGAGATAAA+AGG | + | chr1_4:25962626-25962645 | Msa0157810:CDS | 35.0% | |
| AGGTGACACATGAGATAAAA+GGG | + | chr1_4:25962627-25962646 | Msa0157810:CDS | 35.0% | |
| CAAGAGAATCTAAGTGTACA+GGG | - | chr1_4:25962793-25962812 | Msa0157790:intron | 35.0% | |
| TCAAGAGAATCTAAGTGTAC+AGG | - | chr1_4:25962794-25962813 | Msa0157790:intron | 35.0% | |
| TATATACTGAGCTAAGTGGT+TGG | - | chr1_4:25962841-25962860 | Msa0157790:intron | 35.0% | |
| TCTAATACAAGGTCAGTTTG+AGG | - | chr1_4:25962905-25962924 | Msa0157790:intron | 35.0% | |
| TCAAACTGACCTTGTATTAG+AGG | + | chr1_4:25962904-25962923 | Msa0157810:CDS | 35.0% | |
| CCTAGTAAATAGGTTTGAAG+AGG | - | chr1_4:25962953-25962972 | Msa0157790:intron | 35.0% | |
| CCTCTTCAAACCTATTTACT+AGG | + | chr1_4:25962950-25962969 | Msa0157810:CDS | 35.0% | |
| !! | ATGTAAGGTTGGTAATGCTA+GGG | - | chr1_4:25962994-25963013 | Msa0157790:intron | 35.0% |
| !! | TATGTAAGGTTGGTAATGCT+AGG | - | chr1_4:25962995-25963014 | Msa0157790:intron | 35.0% |
| ! | CAGCTTGTTCTTCTTATGTA+AGG | - | chr1_4:25963009-25963028 | Msa0157790:intron | 35.0% |
| ATAAGAAGAACAAGCTGAGT+TGG | + | chr1_4:25963012-25963031 | Msa0157810:intron | 35.0% | |
| !! | ATAGGTGGTTGATAAAAGAG+GGG | - | chr1_4:25963104-25963123 | Msa0157790:intron | 35.0% |
| !! | CATAGGTGGTTGATAAAAGA+GGG | - | chr1_4:25963105-25963124 | Msa0157790:intron | 35.0% |
| !! | ACATAGGTGGTTGATAAAAG+AGG | - | chr1_4:25963106-25963125 | Msa0157790:intron | 35.0% |
| !! | AACAACCTCTGAGACAATAA+TGG | + | chr1_4:25963170-25963189 | Msa0157810:intron | 35.0% |
| AACTTCCATTATTGTCTCAG+AGG | - | chr1_4:25963178-25963197 | Msa0157790:intron | 35.0% | |
| AGGTTTAGCAAAATGAAGAG+GGG | - | chr1_4:25963294-25963313 | Msa0157790:intron | 35.0% | |
| CAGGTTTAGCAAAATGAAGA+GGG | - | chr1_4:25963295-25963314 | Msa0157790:intron | 35.0% | |
| TCAGGTTTAGCAAAATGAAG+AGG | - | chr1_4:25963296-25963315 | Msa0157790:intron | 35.0% | |
| !! | AAGGTTTCAAGATTGGTTTC+AGG | - | chr1_4:25963314-25963333 | Msa0157790:intron | 35.0% |
| TGAAACCCAACTAGAAAACT+TGG | + | chr1_4:25963364-25963383 | Msa0157810:CDS | 35.0% | |
| !!! | TTGAGCCAAGTTTTCTAGTT+GGG | - | chr1_4:25963372-25963391 | Msa0157790:intron | 35.0% |
| !! | TTTGAGCCAAGTTTTCTAGT+TGG | - | chr1_4:25963373-25963392 | Msa0157790:intron | 35.0% |
| AGCCTCTGATGATAACAATA+TGG | + | chr1_4:25963400-25963419 | Msa0157810:CDS | 35.0% | |
| TGATGATAACAATATGGCCA+TGG | + | chr1_4:25963406-25963425 | Msa0157810:CDS | 35.0% | |
| ATAACCATGTTACTACCAGA+AGG | - | chr1_4:25963446-25963465 | Msa0157790:intron | 35.0% | |
| GGTTGTGAAATAGAAGATGA+AGG | - | chr1_4:25963482-25963501 | Msa0157790:intron | 35.0% | |
| TAACACTAGATTGGAGGTTA+AGG | - | chr1_4:25963528-25963547 | Msa0157790:intron | 35.0% | |
| !! | AGCTTTTAGTTGAGTTGCAA+TGG | - | chr1_4:25963696-25963715 | Msa0157790:intron | 35.0% |
| TGAAGTAGTCATGAAGAGTA+TGG | + | chr1_4:25963730-25963749 | Msa0157810:intron | 35.0% | |
| GAGTCTGAAGAGACAATAAG+GGG | + | chr1_4:25962572-25962591 | Msa0157810:CDS | 40.0% | |
| AGAGACAATAAGGGGAAAAC+AGG | + | chr1_4:25962580-25962599 | Msa0157810:CDS | 40.0% | |
| AATAAGGGGAAAACAGGTTG+AGG | + | chr1_4:25962586-25962605 | Msa0157810:CDS | 40.0% | |
| AGAAGAGAGTTCCAAGATCT+TGG | + | chr1_4:25962658-25962677 | Msa0157810:CDS | 40.0% | |
| AGAATCTAAGTGTACAGGGT+TGG | - | chr1_4:25962789-25962808 | Msa0157790:intron | 40.0% | |
| ! | CTAAGTGGTTGGTTATCTGT+AGG | - | chr1_4:25962830-25962849 | Msa0157790:intron | 40.0% |
| ! | ACAAGGTCAGTTTGAGGTTT+GGG | - | chr1_4:25962899-25962918 | Msa0157790:intron | 40.0% |
| ! | TACAAGGTCAGTTTGAGGTT+TGG | - | chr1_4:25962900-25962919 | Msa0157790:intron | 40.0% |
| TGACCTTGTATTAGAGGTTG+AGG | + | chr1_4:25962910-25962929 | Msa0157810:CDS | 40.0% | |
| CTTCCTCAACCTCTAATACA+AGG | - | chr1_4:25962916-25962935 | Msa0157790:intron | 40.0% | |
| AGGCTTCTCACCTAGTAAAT+AGG | - | chr1_4:25962963-25962982 | Msa0157790:intron | 40.0% | |
| !! | TAGGTGGTTGATAAAAGAGG+GGG | - | chr1_4:25963103-25963122 | Msa0157790:intron | 40.0% |
| !! | ATGTTTGGTTTGGACATAGG+TGG | - | chr1_4:25963119-25963138 | Msa0157790:intron | 40.0% |
| !! | CTGATGTTTGGTTTGGACAT+AGG | - | chr1_4:25963122-25963141 | Msa0157790:intron | 40.0% |
| GGGATTTCTGATGTTTGGTT+TGG | - | chr1_4:25963129-25963148 | Msa0157790:intron | 40.0% | |
| GTATGGGGATTTCTGATGTT+TGG | - | chr1_4:25963134-25963153 | Msa0157790:intron | 40.0% | |
| GGCCATATTGTTATCATCAG+AGG | - | chr1_4:25963405-25963424 | Msa0157790:intron | 40.0% | |
| ACTAGATTGGAGGTTAAGGA+TGG | - | chr1_4:25963524-25963543 | Msa0157790:intron | 40.0% | |
| TGCTTGTAACACTAGATTGG+AGG | - | chr1_4:25963534-25963553 | Msa0157790:intron | 40.0% | |
| CACTGCTTGTAACACTAGAT+TGG | - | chr1_4:25963537-25963556 | Msa0157790:intron | 40.0% | |
| ! | AGAATCTCAAGCACTTTTGG+TGG | - | chr1_4:25963797-25963816 | Msa0157790:intron | 40.0% |
| GTGCTTGAGATTCTAATGTC+TGG | + | chr1_4:25963803-25963822 | Msa0157810:CDS | 40.0% | |
| ATAAGGCTGCACAAAGAACT+TGG | - | chr1_4:25963849-25963868 | Msa0157790:intron | 40.0% | |
| GAGTCTGAAGAGACAATAAG+GGG | + | chr1_4:25962572-25962591 | Msa0157810:CDS | 40.0% | |
| AGAGACAATAAGGGGAAAAC+AGG | + | chr1_4:25962580-25962599 | Msa0157810:CDS | 40.0% | |
| AATAAGGGGAAAACAGGTTG+AGG | + | chr1_4:25962586-25962605 | Msa0157810:CDS | 40.0% | |
| AGAAGAGAGTTCCAAGATCT+TGG | + | chr1_4:25962658-25962677 | Msa0157810:CDS | 40.0% | |
| AGAATCTAAGTGTACAGGGT+TGG | - | chr1_4:25962789-25962808 | Msa0157790:intron | 40.0% | |
| ! | CTAAGTGGTTGGTTATCTGT+AGG | - | chr1_4:25962830-25962849 | Msa0157790:intron | 40.0% |
| ! | ACAAGGTCAGTTTGAGGTTT+GGG | - | chr1_4:25962899-25962918 | Msa0157790:intron | 40.0% |
| ! | TACAAGGTCAGTTTGAGGTT+TGG | - | chr1_4:25962900-25962919 | Msa0157790:intron | 40.0% |
| TGACCTTGTATTAGAGGTTG+AGG | + | chr1_4:25962910-25962929 | Msa0157810:CDS | 40.0% | |
| CTTCCTCAACCTCTAATACA+AGG | - | chr1_4:25962916-25962935 | Msa0157790:intron | 40.0% | |
| AGGCTTCTCACCTAGTAAAT+AGG | - | chr1_4:25962963-25962982 | Msa0157790:intron | 40.0% | |
| !! | TAGGTGGTTGATAAAAGAGG+GGG | - | chr1_4:25963103-25963122 | Msa0157790:intron | 40.0% |
| !! | ATGTTTGGTTTGGACATAGG+TGG | - | chr1_4:25963119-25963138 | Msa0157790:intron | 40.0% |
| !! | CTGATGTTTGGTTTGGACAT+AGG | - | chr1_4:25963122-25963141 | Msa0157790:intron | 40.0% |
| GGGATTTCTGATGTTTGGTT+TGG | - | chr1_4:25963129-25963148 | Msa0157790:intron | 40.0% | |
| GTATGGGGATTTCTGATGTT+TGG | - | chr1_4:25963134-25963153 | Msa0157790:intron | 40.0% | |
| GGCCATATTGTTATCATCAG+AGG | - | chr1_4:25963405-25963424 | Msa0157790:intron | 40.0% | |
| ACTAGATTGGAGGTTAAGGA+TGG | - | chr1_4:25963524-25963543 | Msa0157790:intron | 40.0% | |
| TGCTTGTAACACTAGATTGG+AGG | - | chr1_4:25963534-25963553 | Msa0157790:intron | 40.0% | |
| CACTGCTTGTAACACTAGAT+TGG | - | chr1_4:25963537-25963556 | Msa0157790:intron | 40.0% | |
| ! | AGAATCTCAAGCACTTTTGG+TGG | - | chr1_4:25963797-25963816 | Msa0157790:intron | 40.0% |
| GTGCTTGAGATTCTAATGTC+TGG | + | chr1_4:25963803-25963822 | Msa0157810:CDS | 40.0% | |
| ATAAGGCTGCACAAAGAACT+TGG | - | chr1_4:25963849-25963868 | Msa0157790:intron | 40.0% | |
| CACCTTAACAACCAACTCTC+TGG | - | chr1_4:25962612-25962631 | Msa0157790:intron | 45.0% | |
| CATGTTAGTGGCCAAGATCT+TGG | - | chr1_4:25962672-25962691 | Msa0157790:intron | 45.0% | |
| ATGGTACTTGAGAAGCTGCA+AGG | + | chr1_4:25962708-25962727 | Msa0157810:intron | 45.0% | |
| TCTAAGTGTACAGGGTTGGA+AGG | - | chr1_4:25962785-25962804 | Msa0157790:intron | 45.0% | |
| ! | GGTTGGTTATCTGTAGGTGA+TGG | - | chr1_4:25962824-25962843 | Msa0157790:intron | 45.0% |
| ! | TGAGGTTTGGGTGATAGTGA+TGG | - | chr1_4:25962887-25962906 | Msa0157790:intron | 45.0% |
| GTAATGCTAGGGATGATCAG+AGG | - | chr1_4:25962983-25963002 | Msa0157790:intron | 45.0% | |
| TGAAGAGGGGCAACTAGAAA+GGG | - | chr1_4:25963281-25963300 | Msa0157790:intron | 45.0% | |
| ATGAAGAGGGGCAACTAGAA+AGG | - | chr1_4:25963282-25963301 | Msa0157790:intron | 45.0% | |
| AGGAGCTTCTGATACTTCCA+TGG | - | chr1_4:25963426-25963445 | Msa0157790:intron | 45.0% | |
| ! | GAAGTATCAGAAGCTCCTTC+TGG | + | chr1_4:25963428-25963447 | Msa0157810:CDS | 45.0% |
| AGCTCCTTCTGGTAGTAACA+TGG | + | chr1_4:25963439-25963458 | Msa0157810:CDS | 45.0% | |
| AGATTGGAGGTTAAGGATGG+AGG | - | chr1_4:25963521-25963540 | Msa0157790:intron | 45.0% | |
| ! | CTTTGATAACCTTGAGGAGC+TGG | + | chr1_4:25963568-25963587 | Msa0157810:intron | 45.0% |
| CACCTTAACAACCAACTCTC+TGG | - | chr1_4:25962612-25962631 | Msa0157790:intron | 45.0% | |
| CATGTTAGTGGCCAAGATCT+TGG | - | chr1_4:25962672-25962691 | Msa0157790:intron | 45.0% | |
| ATGGTACTTGAGAAGCTGCA+AGG | + | chr1_4:25962708-25962727 | Msa0157810:intron | 45.0% | |
| TCTAAGTGTACAGGGTTGGA+AGG | - | chr1_4:25962785-25962804 | Msa0157790:intron | 45.0% | |
| ! | GGTTGGTTATCTGTAGGTGA+TGG | - | chr1_4:25962824-25962843 | Msa0157790:intron | 45.0% |
| ! | TGAGGTTTGGGTGATAGTGA+TGG | - | chr1_4:25962887-25962906 | Msa0157790:intron | 45.0% |
| GTAATGCTAGGGATGATCAG+AGG | - | chr1_4:25962983-25963002 | Msa0157790:intron | 45.0% | |
| TGAAGAGGGGCAACTAGAAA+GGG | - | chr1_4:25963281-25963300 | Msa0157790:intron | 45.0% | |
| ATGAAGAGGGGCAACTAGAA+AGG | - | chr1_4:25963282-25963301 | Msa0157790:intron | 45.0% | |
| AGGAGCTTCTGATACTTCCA+TGG | - | chr1_4:25963426-25963445 | Msa0157790:intron | 45.0% | |
| ! | GAAGTATCAGAAGCTCCTTC+TGG | + | chr1_4:25963428-25963447 | Msa0157810:CDS | 45.0% |
| AGCTCCTTCTGGTAGTAACA+TGG | + | chr1_4:25963439-25963458 | Msa0157810:CDS | 45.0% | |
| AGATTGGAGGTTAAGGATGG+AGG | - | chr1_4:25963521-25963540 | Msa0157790:intron | 45.0% | |
| ! | CTTTGATAACCTTGAGGAGC+TGG | + | chr1_4:25963568-25963587 | Msa0157810:intron | 45.0% |
| ! | GGCCAGAGAGTTGGTTGTTA+AGG | + | chr1_4:25962607-25962626 | Msa0157810:CDS | 50.0% |
| GGAGGTGGTTGAATGTTCAG+AGG | - | chr1_4:25963503-25963522 | Msa0157790:intron | 50.0% | |
| TTGGAGGTTAAGGATGGAGG+TGG | - | chr1_4:25963518-25963537 | Msa0157790:intron | 50.0% | |
| TGATAACCTTGAGGAGCTGG+TGG | + | chr1_4:25963571-25963590 | Msa0157810:intron | 50.0% | |
| ! | GGCCAGAGAGTTGGTTGTTA+AGG | + | chr1_4:25962607-25962626 | Msa0157810:CDS | 50.0% |
| GGAGGTGGTTGAATGTTCAG+AGG | - | chr1_4:25963503-25963522 | Msa0157790:intron | 50.0% | |
| TTGGAGGTTAAGGATGGAGG+TGG | - | chr1_4:25963518-25963537 | Msa0157790:intron | 50.0% | |
| TGATAACCTTGAGGAGCTGG+TGG | + | chr1_4:25963571-25963590 | Msa0157810:intron | 50.0% | |
| ! | ACAGGTTGAGGCCAGAGAGT+TGG | + | chr1_4:25962598-25962617 | Msa0157810:CDS | 55.0% |
| GAGGGGCAACTAGAAAGGGT+TGG | - | chr1_4:25963277-25963296 | Msa0157790:intron | 55.0% | |
| TTGCTTCCACCAGCTCCTCA+AGG | - | chr1_4:25963580-25963599 | Msa0157790:intron | 55.0% | |
| ! | ACAGGTTGAGGCCAGAGAGT+TGG | + | chr1_4:25962598-25962617 | Msa0157810:CDS | 55.0% |
| GAGGGGCAACTAGAAAGGGT+TGG | - | chr1_4:25963277-25963296 | Msa0157790:intron | 55.0% | |
| TTGCTTCCACCAGCTCCTCA+AGG | - | chr1_4:25963580-25963599 | Msa0157790:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 25962509 | 25963889 | 25962509 | ID=Msa0157810;Name=Msa0157810 |
| chr1_4 | mRNA | 25962509 | 25963889 | 25962509 | ID=Msa0157810-mRNA-1;Parent=Msa0157810;Name=Msa0157810-mRNA-1;_AED=0.62;_eAED=0.62;_QI=0|0|0|0.5|0.33|0.25|4|0|263 |
| chr1_4 | exon | 25962509 | 25962710 | 25962509 | ID=Msa0157810-mRNA-1:exon:8667;Parent=Msa0157810-mRNA-1 |
| chr1_4 | exon | 25962723 | 25962971 | 25962723 | ID=Msa0157810-mRNA-1:exon:8668;Parent=Msa0157810-mRNA-1 |
| chr1_4 | exon | 25963264 | 25963460 | 25963264 | ID=Msa0157810-mRNA-1:exon:8669;Parent=Msa0157810-mRNA-1 |
| chr1_4 | exon | 25963746 | 25963889 | 25963746 | ID=Msa0157810-mRNA-1:exon:8670;Parent=Msa0157810-mRNA-1 |
| chr1_4 | CDS | 25962509 | 25962710 | 25962509 | ID=Msa0157810-mRNA-1:cds;Parent=Msa0157810-mRNA-1 |
| chr1_4 | CDS | 25962723 | 25962971 | 25962723 | ID=Msa0157810-mRNA-1:cds;Parent=Msa0157810-mRNA-1 |
| chr1_4 | CDS | 25963264 | 25963460 | 25963264 | ID=Msa0157810-mRNA-1:cds;Parent=Msa0157810-mRNA-1 |
| chr1_4 | CDS | 25963746 | 25963889 | 25963746 | ID=Msa0157810-mRNA-1:cds;Parent=Msa0157810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
